Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51232.t1 | XP_003610822.1 | 99.5 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 4.70E-104 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51232.t1 | Q9M8T9 | 64.8 | 182 | 64 | 0 | 12 | 193 | 25 | 206 | 2.2e-65 | 250.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51232.t1 | B7FKF5 | 99.5 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 3.4e-104 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51232.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049499 | MS.gene51232 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene055724 | MS.gene51232 | 0.807021 | 6.19E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene51232 | 0.813583 | 2.38E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene51232 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene51232 | 0.812351 | 4.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51232.t1 | MTR_5g007400 | 99.482 | 193 | 1 | 0 | 1 | 193 | 1 | 193 | 5.89e-142 | 395 |
| MS.gene51232.t1 | MTR_5g098790 | 28.289 | 152 | 86 | 3 | 17 | 168 | 14 | 142 | 2.96e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51232.t1 | AT5G16800 | 67.876 | 193 | 62 | 0 | 1 | 193 | 14 | 206 | 3.43e-95 | 278 |
| MS.gene51232.t1 | AT5G16800 | 67.876 | 193 | 62 | 0 | 1 | 193 | 14 | 206 | 8.82e-95 | 275 |
| MS.gene51232.t1 | AT5G16800 | 66.845 | 187 | 62 | 0 | 1 | 187 | 14 | 200 | 3.50e-89 | 263 |
| MS.gene51232.t1 | AT3G02980 | 64.835 | 182 | 64 | 0 | 12 | 193 | 25 | 206 | 1.44e-85 | 253 |
| MS.gene51232.t1 | AT3G02980 | 61.261 | 111 | 43 | 0 | 83 | 193 | 26 | 136 | 1.19e-47 | 154 |
| MS.gene51232.t1 | AT5G11340 | 27.607 | 163 | 94 | 4 | 17 | 179 | 14 | 152 | 1.01e-14 | 68.9 |
Find 44 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGACTAGACCCTTTC+GGG | 0.206622 | 5.4:+2724159 | None:intergenic |
| TTATTCGTGCACTACGTAAA+TGG | 0.221441 | 5.4:-2722158 | MS.gene51232:CDS |
| GGCCAAAGTGATGAACTTAT+TGG | 0.280025 | 5.4:-2723894 | MS.gene51232:CDS |
| GGGAGTAGTGGAAGCATATA+GGG | 0.323949 | 5.4:-2722456 | MS.gene51232:CDS |
| TTTGATTGACTAGACCCTTT+CGG | 0.334623 | 5.4:+2724158 | None:intergenic |
| CACTAAAGTCTGGTCAGATT+TGG | 0.334799 | 5.4:+2722493 | None:intergenic |
| TATTCGTGCACTACGTAAAT+GGG | 0.359781 | 5.4:-2722157 | MS.gene51232:CDS |
| TGGGAGTAGTGGAAGCATAT+AGG | 0.379806 | 5.4:-2722457 | MS.gene51232:CDS |
| GCATATAGGGGCCTTGGAAT+AGG | 0.403458 | 5.4:-2722443 | MS.gene51232:intron |
| CACCAGCTTCTTCTTTGATA+CGG | 0.412039 | 5.4:-2722346 | MS.gene51232:intron |
| TCAAAATCAGACGGTCGTAT+AGG | 0.418162 | 5.4:+2724122 | None:intergenic |
| ATGGTAGATTATTTCCCATC+AGG | 0.419207 | 5.4:-2724082 | MS.gene51232:intron |
| GTGGAAGCATATAGGGGCCT+TGG | 0.421160 | 5.4:-2722449 | MS.gene51232:CDS |
| AGTTCATCACTTTGGCCATT+CGG | 0.428159 | 5.4:+2723900 | None:intergenic |
| ACCAGCTTCTTCTTTGATAC+GGG | 0.449831 | 5.4:-2722345 | MS.gene51232:intron |
| CAAGTGTGTTAGAAAGCTGC+AGG | 0.455738 | 5.4:-2722219 | MS.gene51232:CDS |
| ATCCAATAAGTTCATCACTT+TGG | 0.471996 | 5.4:+2723892 | None:intergenic |
| TGCACTTACAATGGCGAGCA+AGG | 0.487162 | 5.4:+2722125 | None:intergenic |
| TTGTAGATTGTGGATTTGCT+TGG | 0.510430 | 5.4:-2722527 | MS.gene51232:intron |
| CGAAGATGTGGTGAACAGAC+GGG | 0.516575 | 5.4:-2723958 | MS.gene51232:CDS |
| TTTAGTGTATGTTCTAACAC+TGG | 0.518861 | 5.4:-2722477 | MS.gene51232:CDS |
| TTAGAACATACACTAAAGTC+TGG | 0.520023 | 5.4:+2722483 | None:intergenic |
| GATCAATGGTAAACCCGAAA+GGG | 0.533764 | 5.4:-2724172 | None:intergenic |
| TCGAAGATGTGGTGAACAGA+CGG | 0.541792 | 5.4:-2723959 | MS.gene51232:CDS |
| CAGACGGGATATTGTGTCGT+GGG | 0.543303 | 5.4:-2723943 | MS.gene51232:CDS |
| TGTTCTAACACTGGGAGTAG+TGG | 0.563129 | 5.4:-2722468 | MS.gene51232:CDS |
| TGTTCTTGCAAAAGAAAGTG+AGG | 0.573579 | 5.4:-2723853 | MS.gene51232:intron |
| CGATCAATGGTAAACCCGAA+AGG | 0.590054 | 5.4:-2724173 | None:intergenic |
| AGCTTCTTCTTTGATACGGG+AGG | 0.591740 | 5.4:-2722342 | MS.gene51232:CDS |
| ACAAACTGCTACCTATTCCA+AGG | 0.593056 | 5.4:+2722432 | None:intergenic |
| TTAGTGTATGTTCTAACACT+GGG | 0.599355 | 5.4:-2722476 | MS.gene51232:CDS |
| ACACGATGATCTCACCTGAT+GGG | 0.613102 | 5.4:+2724068 | None:intergenic |
| ATTCGTGCACTACGTAAATG+GGG | 0.616046 | 5.4:-2722156 | MS.gene51232:CDS |
| GTTGATCTTAGTCGACCGAA+TGG | 0.627310 | 5.4:-2723915 | MS.gene51232:CDS |
| GGAGTAGTGGAAGCATATAG+GGG | 0.641948 | 5.4:-2722455 | MS.gene51232:CDS |
| AAGTGTGTTAGAAAGCTGCA+GGG | 0.647080 | 5.4:-2722218 | MS.gene51232:CDS |
| TCACATGCAAGTAAACCGCT+CGG | 0.652403 | 5.4:+2722288 | None:intergenic |
| TTCGTGCACTACGTAAATGG+GGG | 0.654674 | 5.4:-2722155 | MS.gene51232:CDS |
| ACAGACGGGATATTGTGTCG+TGG | 0.662598 | 5.4:-2723944 | MS.gene51232:CDS |
| AAGCATTCCAACGTGCCGAG+CGG | 0.675262 | 5.4:-2722303 | MS.gene51232:CDS |
| AGACGGGATATTGTGTCGTG+GGG | 0.679193 | 5.4:-2723942 | MS.gene51232:CDS |
| AAGTAAACCGCTCGGCACGT+TGG | 0.682588 | 5.4:+2722296 | None:intergenic |
| TCTAAAACGTCAAAATCAGA+CGG | 0.689832 | 5.4:+2724113 | None:intergenic |
| TTATTGGATTTGTAACAGCG+CGG | 0.789219 | 5.4:-2723878 | MS.gene51232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTAATATTCT+TGG | - | chr5.4:2722934-2722953 | MS.gene51232:intron | 10.0% |
| !! | ATTAAAATAAATACTCCAAA+TGG | + | chr5.4:2722929-2722948 | None:intergenic | 15.0% |
| !! | TTAAAATAAATACTCCAAAT+GGG | + | chr5.4:2722928-2722947 | None:intergenic | 15.0% |
| !!! | ATTTACTTGTTTTCTATAAA+GGG | - | chr5.4:2722604-2722623 | MS.gene51232:intron | 15.0% |
| !!! | ATTTATTTTAATATTCTTGG+AGG | - | chr5.4:2722937-2722956 | MS.gene51232:intron | 15.0% |
| !! | AATAAACAATTATCAGCAAA+AGG | + | chr5.4:2723736-2723755 | None:intergenic | 20.0% |
| !! | AATATTATTCTTGTAGATTG+TGG | - | chr5.4:2723764-2723783 | MS.gene51232:intron | 20.0% |
| !! | ACTACAATATATATTCCTAA+TGG | + | chr5.4:2723054-2723073 | None:intergenic | 20.0% |
| !! | ATAAAAATGAATCATAGTGT+TGG | + | chr5.4:2724127-2724146 | None:intergenic | 20.0% |
| !! | ATGCATACAGTTATATATAA+AGG | + | chr5.4:2722481-2722500 | None:intergenic | 20.0% |
| !! | ATTAGGAATATATATTGTAG+TGG | - | chr5.4:2723053-2723072 | MS.gene51232:intron | 20.0% |
| !! | TATAACACCAATTGATAAAT+TGG | + | chr5.4:2723594-2723613 | None:intergenic | 20.0% |
| !! | TGCATACAGTTATATATAAA+GGG | + | chr5.4:2722480-2722499 | None:intergenic | 20.0% |
| !! | TTATTCACCAATTTATCAAT+TGG | - | chr5.4:2723584-2723603 | MS.gene51232:intron | 20.0% |
| !! | TTGAAATATTACATCAAACA+TGG | + | chr5.4:2722794-2722813 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAGAGTATTGTC+TGG | + | chr5.4:2723467-2723486 | None:intergenic | 20.0% |
| !!! | CATTTTGATTATAACTTCTA+TGG | - | chr5.4:2723094-2723113 | MS.gene51232:intron | 20.0% |
| !!! | CTACAGCATATATTTTTAAT+AGG | + | chr5.4:2723147-2723166 | None:intergenic | 20.0% |
| !!! | GATTTACTTGTTTTCTATAA+AGG | - | chr5.4:2722603-2722622 | MS.gene51232:intron | 20.0% |
| !!! | TTTACTTGTTTTCTATAAAG+GGG | - | chr5.4:2722605-2722624 | MS.gene51232:intron | 20.0% |
| !!! | TTTTCATAACAAGTTGTATT+GGG | - | chr5.4:2723376-2723395 | MS.gene51232:intron | 20.0% |
| !!! | TTTTTCATAACAAGTTGTAT+TGG | - | chr5.4:2723375-2723394 | MS.gene51232:intron | 20.0% |
| ! | ATCGAATGAGATAGTTTAAT+CGG | + | chr5.4:2723683-2723702 | None:intergenic | 25.0% |
| ! | GCATACAGTTATATATAAAG+GGG | + | chr5.4:2722479-2722498 | None:intergenic | 25.0% |
| ! | GTCAATCAAAAATATGCTAT+CGG | - | chr5.4:2722156-2722175 | MS.gene51232:CDS | 25.0% |
| ! | GTTAAACTAAGAATTACAGA+GGG | + | chr5.4:2723714-2723733 | None:intergenic | 25.0% |
| ! | TAGATTACCAATCATATTAC+TGG | + | chr5.4:2723922-2723941 | None:intergenic | 25.0% |
| ! | TTAAGATGTTTATGAATCTC+AGG | - | chr5.4:2722303-2722322 | MS.gene51232:CDS | 25.0% |
| ! | TTTATGAGTAGTTATCCATT+AGG | - | chr5.4:2723036-2723055 | MS.gene51232:intron | 25.0% |
| !! | ACATAACACATACTTTGTTT+GGG | + | chr5.4:2722682-2722701 | None:intergenic | 25.0% |
| !! | AGATTGATAGACTCAAATTT+TGG | + | chr5.4:2722755-2722774 | None:intergenic | 25.0% |
| AAATAAATACTCCAAATGGG+AGG | + | chr5.4:2722925-2722944 | None:intergenic | 30.0% | |
| AACTTACAATTCACACAAAC+TGG | + | chr5.4:2723441-2723460 | None:intergenic | 30.0% | |
| AACTTCTATGGTGACAATTA+TGG | - | chr5.4:2723106-2723125 | MS.gene51232:intron | 30.0% | |
| ACTTCTATGGTGACAATTAT+GGG | - | chr5.4:2723107-2723126 | MS.gene51232:intron | 30.0% | |
| ATCCAATAAGTTCATCACTT+TGG | + | chr5.4:2722412-2722431 | None:intergenic | 30.0% | |
| ATGTGTTATGTCTATGTTCA+AGG | - | chr5.4:2722691-2722710 | MS.gene51232:intron | 30.0% | |
| ATTACCAATCATATTACTGG+AGG | + | chr5.4:2723919-2723938 | None:intergenic | 30.0% | |
| ATTGTGTGATTCAATTGCAT+TGG | - | chr5.4:2723404-2723423 | MS.gene51232:intron | 30.0% | |
| CAAGCAATACAACTAAGAAA+AGG | + | chr5.4:2723542-2723561 | None:intergenic | 30.0% | |
| CTGTGTTTATGTTGTAAGTT+TGG | - | chr5.4:2723307-2723326 | MS.gene51232:intron | 30.0% | |
| GACATAACACATACTTTGTT+TGG | + | chr5.4:2722683-2722702 | None:intergenic | 30.0% | |
| GGTTAAACTAAGAATTACAG+AGG | + | chr5.4:2723715-2723734 | None:intergenic | 30.0% | |
| GTTTGTGTGAATTGTAAGTT+TGG | - | chr5.4:2723441-2723460 | MS.gene51232:intron | 30.0% | |
| TAAGCTAATGGAACATTATC+AGG | + | chr5.4:2722889-2722908 | None:intergenic | 30.0% | |
| TTACCAATCATATTACTGGA+GGG | + | chr5.4:2723918-2723937 | None:intergenic | 30.0% | |
| TTAGAACATACACTAAAGTC+TGG | + | chr5.4:2723821-2723840 | None:intergenic | 30.0% | |
| TTAGTGTATGTTCTAACACT+GGG | - | chr5.4:2723825-2723844 | MS.gene51232:intron | 30.0% | |
| TTGAGTAAGTCATTACCTAA+TGG | + | chr5.4:2723644-2723663 | None:intergenic | 30.0% | |
| TTTAGTGTATGTTCTAACAC+TGG | - | chr5.4:2723824-2723843 | MS.gene51232:intron | 30.0% | |
| ! | TCTAAAACGTCAAAATCAGA+CGG | + | chr5.4:2722191-2722210 | None:intergenic | 30.0% |
| !! | ACAACTTGTTATGAAAAACC+AGG | + | chr5.4:2723373-2723392 | None:intergenic | 30.0% |
| !! | AGACTCAAATTTTGGTATCA+AGG | + | chr5.4:2722747-2722766 | None:intergenic | 30.0% |
| !! | GATCCTTTTATTAGTCTGAT+GGG | - | chr5.4:2722845-2722864 | MS.gene51232:intron | 30.0% |
| !! | TGATCCTTTTATTAGTCTGA+TGG | - | chr5.4:2722844-2722863 | MS.gene51232:intron | 30.0% |
| !!! | CAGGGCTTTTATTTTATCAA+TGG | - | chr5.4:2724101-2724120 | MS.gene51232:CDS | 30.0% |
| !!! | TTAGTTGGGTTTTAAGCTAA+TGG | + | chr5.4:2722901-2722920 | None:intergenic | 30.0% |
| ACTATCTCATTCGATAGAGT+AGG | - | chr5.4:2723688-2723707 | MS.gene51232:intron | 35.0% | |
| ACTTATGATTCACTTATGCG+TGG | - | chr5.4:2722983-2723002 | MS.gene51232:intron | 35.0% | |
| ATATCAGAATACTCTCTGGT+AGG | - | chr5.4:2723335-2723354 | MS.gene51232:intron | 35.0% | |
| ATGGTAGATTATTTCCCATC+AGG | - | chr5.4:2722219-2722238 | MS.gene51232:CDS | 35.0% | |
| CAGAATATCAGAATACTCTC+TGG | - | chr5.4:2723331-2723350 | MS.gene51232:intron | 35.0% | |
| CGTAGGAGTAATACGAATTT+CGG | - | chr5.4:2723513-2723532 | MS.gene51232:intron | 35.0% | |
| GTTCCCATCAGACTAATAAA+AGG | + | chr5.4:2722851-2722870 | None:intergenic | 35.0% | |
| TAAGTAGACAGAGAATACGT+AGG | - | chr5.4:2723496-2723515 | MS.gene51232:intron | 35.0% | |
| TATTCGTGCACTACGTAAAT+GGG | - | chr5.4:2724144-2724163 | MS.gene51232:CDS | 35.0% | |
| TGAAACCGGGAAGAAAAAAA+AGG | - | chr5.4:2723263-2723282 | MS.gene51232:intron | 35.0% | |
| TGTTCTTGCAAAAGAAAGTG+AGG | - | chr5.4:2722448-2722467 | MS.gene51232:CDS | 35.0% | |
| TTAAGCAGACAGTGTAAACT+AGG | + | chr5.4:2722818-2722837 | None:intergenic | 35.0% | |
| TTACTACTCTGTGGAAAGTA+TGG | - | chr5.4:2722563-2722582 | MS.gene51232:intron | 35.0% | |
| TTATTCGTGCACTACGTAAA+TGG | - | chr5.4:2724143-2724162 | MS.gene51232:CDS | 35.0% | |
| TTATTGGATTTGTAACAGCG+CGG | - | chr5.4:2722423-2722442 | MS.gene51232:intron | 35.0% | |
| TTTGATTGACTAGACCCTTT+CGG | + | chr5.4:2722146-2722165 | None:intergenic | 35.0% | |
| ! | TTGTAGATTGTGGATTTGCT+TGG | - | chr5.4:2723774-2723793 | MS.gene51232:intron | 35.0% |
| !! | GGTGTTATATCCTAGTCTTT+TGG | - | chr5.4:2723605-2723624 | MS.gene51232:intron | 35.0% |
| !! | TATCAGGTCCATTTAGTTCT+TGG | + | chr5.4:2722873-2722892 | None:intergenic | 35.0% |
| !!! | ATCTGCTTTTTTCGAAGATG+TGG | - | chr5.4:2722331-2722350 | MS.gene51232:CDS | 35.0% |
| !!! | CACTACCTTTTTTTTCTTCC+CGG | + | chr5.4:2723271-2723290 | None:intergenic | 35.0% |
| AAGCCCTCCAGTAATATGAT+TGG | - | chr5.4:2723912-2723931 | MS.gene51232:CDS | 40.0% | |
| AAGTGTGTTAGAAAGCTGCA+GGG | - | chr5.4:2724083-2724102 | MS.gene51232:CDS | 40.0% | |
| ACAAACTGCTACCTATTCCA+AGG | + | chr5.4:2723872-2723891 | None:intergenic | 40.0% | |
| ACCAGCTTCTTCTTTGATAC+GGG | - | chr5.4:2723956-2723975 | MS.gene51232:CDS | 40.0% | |
| AGTTCATCACTTTGGCCATT+CGG | + | chr5.4:2722404-2722423 | None:intergenic | 40.0% | |
| ATTCGTGCACTACGTAAATG+GGG | - | chr5.4:2724145-2724164 | MS.gene51232:CDS | 40.0% | |
| CACCAGCTTCTTCTTTGATA+CGG | - | chr5.4:2723955-2723974 | MS.gene51232:CDS | 40.0% | |
| CACTAAAGTCTGGTCAGATT+TGG | + | chr5.4:2723811-2723830 | None:intergenic | 40.0% | |
| GATGGGAACCAAGAACTAAA+TGG | - | chr5.4:2722862-2722881 | MS.gene51232:intron | 40.0% | |
| GGCCAAAGTGATGAACTTAT+TGG | - | chr5.4:2722407-2722426 | MS.gene51232:intron | 40.0% | |
| GGTAGTGCTGTGTAAAAAAC+TGG | - | chr5.4:2723284-2723303 | MS.gene51232:intron | 40.0% | |
| GTTCTGTTCTTACTACTCTG+TGG | - | chr5.4:2722554-2722573 | MS.gene51232:intron | 40.0% | |
| GTTTACACTGTCTGCTTAAG+TGG | - | chr5.4:2722819-2722838 | MS.gene51232:intron | 40.0% | |
| TCAAAATCAGACGGTCGTAT+AGG | + | chr5.4:2722182-2722201 | None:intergenic | 40.0% | |
| TCAAGGCAAGAGAAACTTGA+TGG | - | chr5.4:2722708-2722727 | MS.gene51232:intron | 40.0% | |
| TCCAAATGGGAGGTTTAGTT+GGG | + | chr5.4:2722915-2722934 | None:intergenic | 40.0% | |
| TTGATTGACTAGACCCTTTC+GGG | + | chr5.4:2722145-2722164 | None:intergenic | 40.0% | |
| ! | ACAGAACACGTTCTGTTTTC+AGG | + | chr5.4:2722541-2722560 | None:intergenic | 40.0% |
| ! | TCATCGTGTTGTTGTTCTAC+TGG | - | chr5.4:2722247-2722266 | MS.gene51232:CDS | 40.0% |
| ! | TTCTTGGAGGAGAAAGCATA+TGG | - | chr5.4:2722950-2722969 | MS.gene51232:intron | 40.0% |
| !!! | GACGTTTTAGAGCGTATTCA+TGG | - | chr5.4:2722200-2722219 | MS.gene51232:CDS | 40.0% |
| AACACGATGATCTCACCTGA+TGG | + | chr5.4:2722237-2722256 | None:intergenic | 45.0% | |
| ACACGATGATCTCACCTGAT+GGG | + | chr5.4:2722236-2722255 | None:intergenic | 45.0% | |
| ACCAAGGTTCAAATTCTGGC+TGG | - | chr5.4:2723220-2723239 | MS.gene51232:intron | 45.0% | |
| ACCCAACTAAACCTCCCATT+TGG | - | chr5.4:2722911-2722930 | MS.gene51232:intron | 45.0% | |
| AGCTTCTTCTTTGATACGGG+AGG | - | chr5.4:2723959-2723978 | MS.gene51232:CDS | 45.0% | |
| ATATGCTGTAGAACCAACCG+AGG | - | chr5.4:2723156-2723175 | MS.gene51232:intron | 45.0% | |
| ATTACCTAATGGTCAGCGCT+TGG | + | chr5.4:2723633-2723652 | None:intergenic | 45.0% | |
| CAAGTGTGTTAGAAAGCTGC+AGG | - | chr5.4:2724082-2724101 | MS.gene51232:intron | 45.0% | |
| CTCCAAATGGGAGGTTTAGT+TGG | + | chr5.4:2722916-2722935 | None:intergenic | 45.0% | |
| GCGAACCAAGGTTCAAATTC+TGG | - | chr5.4:2723216-2723235 | MS.gene51232:intron | 45.0% | |
| GGTAGGAGTCATATAACTCC+TGG | - | chr5.4:2723352-2723371 | MS.gene51232:intron | 45.0% | |
| GTAGTGGTGTCTGAAAGTAG+TGG | - | chr5.4:2723069-2723088 | MS.gene51232:intron | 45.0% | |
| GTTGATCTTAGTCGACCGAA+TGG | - | chr5.4:2722386-2722405 | MS.gene51232:intron | 45.0% | |
| TCACATGCAAGTAAACCGCT+CGG | + | chr5.4:2724016-2724035 | None:intergenic | 45.0% | |
| TCCCGGTTTCACACAAAAGT+GGG | + | chr5.4:2723254-2723273 | None:intergenic | 45.0% | |
| TCCCGTATCAAAGAAGAAGC+TGG | + | chr5.4:2723960-2723979 | None:intergenic | 45.0% | |
| TCGAAGATGTGGTGAACAGA+CGG | - | chr5.4:2722342-2722361 | MS.gene51232:CDS | 45.0% | |
| TGTTCTAACACTGGGAGTAG+TGG | - | chr5.4:2723833-2723852 | MS.gene51232:intron | 45.0% | |
| TTCCCGGTTTCACACAAAAG+TGG | + | chr5.4:2723255-2723274 | None:intergenic | 45.0% | |
| TTCGTGCACTACGTAAATGG+GGG | - | chr5.4:2724146-2724165 | MS.gene51232:CDS | 45.0% | |
| ! | AACCTTGGTTCGCTATGTTG+TGG | + | chr5.4:2723209-2723228 | None:intergenic | 45.0% |
| ! | ACCTTGGTTCGCTATGTTGT+GGG | + | chr5.4:2723208-2723227 | None:intergenic | 45.0% |
| ! | CAAAGAAGAAGCTGGTGATG+AGG | + | chr5.4:2723952-2723971 | None:intergenic | 45.0% |
| ! | CCAAGGTTCAAATTCTGGCT+GGG | - | chr5.4:2723221-2723240 | MS.gene51232:intron | 45.0% |
| ! | GGAGTAGTGGAAGCATATAG+GGG | - | chr5.4:2723846-2723865 | MS.gene51232:intron | 45.0% |
| ! | GGGAGTAGTGGAAGCATATA+GGG | - | chr5.4:2723845-2723864 | MS.gene51232:intron | 45.0% |
| ! | TGGGAGTAGTGGAAGCATAT+AGG | - | chr5.4:2723844-2723863 | MS.gene51232:intron | 45.0% |
| ACAGACGGGATATTGTGTCG+TGG | - | chr5.4:2722357-2722376 | MS.gene51232:intron | 50.0% | |
| AGACGGGATATTGTGTCGTG+GGG | - | chr5.4:2722359-2722378 | MS.gene51232:intron | 50.0% | |
| CAGACGGGATATTGTGTCGT+GGG | - | chr5.4:2722358-2722377 | MS.gene51232:intron | 50.0% | |
| CCCAGCCAGAATTTGAACCT+TGG | + | chr5.4:2723224-2723243 | None:intergenic | 50.0% | |
| CGAAGATGTGGTGAACAGAC+GGG | - | chr5.4:2722343-2722362 | MS.gene51232:CDS | 50.0% | |
| CTGTAGAACCAACCGAGGTT+GGG | - | chr5.4:2723161-2723180 | MS.gene51232:intron | 50.0% | |
| GCATATAGGGGCCTTGGAAT+AGG | - | chr5.4:2723858-2723877 | MS.gene51232:CDS | 50.0% | |
| TCCCACAACATAGCGAACCA+AGG | - | chr5.4:2723204-2723223 | MS.gene51232:intron | 50.0% | |
| TGCACTACGTAAATGGGGGA+CGG | - | chr5.4:2724150-2724169 | MS.gene51232:CDS | 50.0% | |
| ! | GTTCAAATTCTGGCTGGGAG+TGG | - | chr5.4:2723226-2723245 | MS.gene51232:intron | 50.0% |
| !! | CGCCCACTTTTGTGTGAAAC+CGG | - | chr5.4:2723249-2723268 | MS.gene51232:intron | 50.0% |
| !! | GCCCACTTTTGTGTGAAACC+GGG | - | chr5.4:2723250-2723269 | MS.gene51232:intron | 50.0% |
| AAGCATTCCAACGTGCCGAG+CGG | - | chr5.4:2723998-2724017 | MS.gene51232:intron | 55.0% | |
| AAGTAAACCGCTCGGCACGT+TGG | + | chr5.4:2724008-2724027 | None:intergenic | 55.0% | |
| GCGCTTGGCACCAAAAGACT+AGG | + | chr5.4:2723618-2723637 | None:intergenic | 55.0% | |
| GCTGTAGAACCAACCGAGGT+TGG | - | chr5.4:2723160-2723179 | MS.gene51232:intron | 55.0% | |
| ! | GTGGAAGCATATAGGGGCCT+TGG | - | chr5.4:2723852-2723871 | MS.gene51232:intron | 55.0% |
| CCAACCGAGGTTGGGTCTAG+CGG | - | chr5.4:2723169-2723188 | MS.gene51232:intron | 60.0% | |
| CGAGGTTGGGTCTAGCGGAA+CGG | - | chr5.4:2723174-2723193 | MS.gene51232:intron | 60.0% | |
| CGTTCCGCTAGACCCAACCT+CGG | + | chr5.4:2723176-2723195 | None:intergenic | 60.0% | |
| GAGGTTGGGTCTAGCGGAAC+GGG | - | chr5.4:2723175-2723194 | MS.gene51232:intron | 60.0% | |
| !! | GGTGCCAAGCGCTGACCATT+AGG | - | chr5.4:2723626-2723645 | MS.gene51232:intron | 60.0% |
| CCGCTAGACCCAACCTCGGT+TGG | + | chr5.4:2723172-2723191 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2722134 | 2724189 | 2722134 | ID=MS.gene51232 |
| chr5.4 | mRNA | 2722134 | 2724189 | 2722134 | ID=MS.gene51232.t1;Parent=MS.gene51232 |
| chr5.4 | exon | 2724083 | 2724189 | 2724083 | ID=MS.gene51232.t1.exon1;Parent=MS.gene51232.t1 |
| chr5.4 | CDS | 2724083 | 2724189 | 2724083 | ID=cds.MS.gene51232.t1;Parent=MS.gene51232.t1 |
| chr5.4 | exon | 2723854 | 2723998 | 2723854 | ID=MS.gene51232.t1.exon2;Parent=MS.gene51232.t1 |
| chr5.4 | CDS | 2723854 | 2723998 | 2723854 | ID=cds.MS.gene51232.t1;Parent=MS.gene51232.t1 |
| chr5.4 | exon | 2722444 | 2722543 | 2722444 | ID=MS.gene51232.t1.exon3;Parent=MS.gene51232.t1 |
| chr5.4 | CDS | 2722444 | 2722543 | 2722444 | ID=cds.MS.gene51232.t1;Parent=MS.gene51232.t1 |
| chr5.4 | exon | 2722134 | 2722362 | 2722134 | ID=MS.gene51232.t1.exon4;Parent=MS.gene51232.t1 |
| chr5.4 | CDS | 2722134 | 2722362 | 2722134 | ID=cds.MS.gene51232.t1;Parent=MS.gene51232.t1 |
| Gene Sequence |
| Protein sequence |
