Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060012.t1 | KEH26156.1 | 92.5 | 464 | 19 | 2 | 1 | 464 | 1 | 448 | 4.40E-226 | 793.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060012.t1 | Q67XQ0 | 73.6 | 447 | 105 | 3 | 22 | 465 | 26 | 462 | 1.3e-173 | 610.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060012.t1 | A0A072U9P1 | 92.5 | 464 | 19 | 2 | 1 | 464 | 1 | 448 | 3.1e-226 | 793.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene060012 | 0.804051 | 2.60E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene060012 | 0.826716 | 2.33E-54 | -1.69E-46 |
| MS.gene051699 | MS.gene060012 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene060012 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene060012 | 0.829239 | 5.75E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene060012 | 0.907167 | 6.79E-81 | -1.69E-46 |
| MS.gene054576 | MS.gene060012 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene060012 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene060012 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene060012 | 0.809621 | 1.73E-50 | -1.69E-46 |
| MS.gene058897 | MS.gene060012 | 0.825621 | 4.24E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene060012 | 0.844187 | 8.83E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene060879 | 0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene063247 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene06372 | 0.825094 | 5.65E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene065815 | 0.839946 | 1.17E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene065886 | 0.804669 | 1.93E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene066513 | 0.860677 | 1.75E-63 | -1.69E-46 |
| MS.gene060012 | MS.gene068350 | 0.805413 | 1.35E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene071556 | 0.829957 | 3.85E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene071557 | 0.82806 | 1.11E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene071569 | 0.831309 | 1.80E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene073334 | 0.81134 | 7.35E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene073756 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene060012 | MS.gene074100 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene07815 | 0.837866 | 4.04E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene08582 | 0.8361 | 1.14E-56 | -1.69E-46 |
| MS.gene060012 | MS.gene09166 | 0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene09930 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene20392 | 0.800944 | 1.14E-48 | -1.69E-46 |
| MS.gene060012 | MS.gene20608 | 0.825527 | 4.46E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene22557 | 0.810041 | 1.40E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene23464 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene23695 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene24285 | 0.807005 | 6.24E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene25686 | 0.829635 | 4.61E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene26958 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene27318 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene27516 | 0.846973 | 1.55E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene28550 | 0.801694 | 7.98E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene29036 | 0.822685 | 2.08E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene29096 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene30368 | 0.81635 | 5.79E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene31551 | 0.836008 | 1.20E-56 | -1.69E-46 |
| MS.gene060012 | MS.gene31855 | 0.820092 | 8.23E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene32801 | 0.858275 | 9.21E-63 | -1.69E-46 |
| MS.gene060012 | MS.gene33483 | 0.807647 | 4.56E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene33651 | 0.846872 | 1.65E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene34444 | 0.828668 | 7.91E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene36229 | 0.808125 | 3.61E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene36231 | 0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene060012 | MS.gene37412 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene37612 | 0.802202 | 6.27E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene39037 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene40320 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene40608 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene41955 | 0.801382 | 9.25E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene45649 | 0.80669 | 7.28E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene51232 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene53537 | 0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene54090 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene54339 | 0.807995 | 3.85E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene54511 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene060012 | MS.gene57128 | 0.845776 | 3.29E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene58284 | 0.80562 | 1.22E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene58571 | 0.821534 | 3.84E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene58653 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene59540 | 0.841897 | 3.59E-58 | -1.69E-46 |
| MS.gene060012 | MS.gene62676 | 0.825904 | 3.63E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene62677 | 0.832404 | 9.64E-56 | -1.69E-46 |
| MS.gene060012 | MS.gene65294 | 0.842966 | 1.87E-58 | -1.69E-46 |
| MS.gene060012 | MS.gene65295 | 0.827454 | 1.55E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene68198 | 0.816879 | 4.40E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene69855 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene71735 | 0.83008 | 3.59E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene71828 | 0.845868 | 3.11E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene71945 | 0.803516 | 3.36E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene72620 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene060012 | MS.gene73467 | 0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene74530 | 0.805791 | 1.13E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene74537 | 0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene74956 | 0.839986 | 1.14E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene75413 | 0.801901 | 7.23E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene76244 | 0.808375 | 3.19E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene76755 | 0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene77412 | 0.830312 | 3.15E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene78642 | 0.830034 | 3.69E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene78773 | 0.827767 | 1.30E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene79568 | 0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene83312 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene84162 | 0.806116 | 9.62E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene84484 | 0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene85627 | 0.80758 | 4.72E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene85978 | 0.815459 | 9.15E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene85979 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene86155 | 0.831938 | 1.26E-55 | -1.69E-46 |
| MS.gene060012 | MS.gene86311 | 0.836867 | 7.28E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene87673 | 0.844169 | 8.93E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene88351 | 0.819864 | 9.29E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene89812 | 0.801297 | 9.62E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene90651 | 0.807785 | 4.27E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene91204 | 0.803958 | 2.72E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene92065 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene92067 | 0.814454 | 1.53E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene92320 | 0.836485 | 9.10E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene92348 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene92775 | 0.84536 | 4.26E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene94566 | 0.802963 | 4.37E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene95655 | 0.825238 | 5.23E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene96324 | 0.810404 | 1.17E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene96973 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene97447 | 0.818671 | 1.74E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene99483 | 0.839467 | 1.56E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene99894 | 0.823986 | 1.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036604 | MS.gene060012 | PPI |
| MS.gene041452 | MS.gene060012 | PPI |
| MS.gene57722 | MS.gene060012 | PPI |
| MS.gene058897 | MS.gene060012 | PPI |
| MS.gene41955 | MS.gene060012 | PPI |
| MS.gene054222 | MS.gene060012 | PPI |
| MS.gene060012 | MS.gene58727 | PPI |
| MS.gene58727 | MS.gene060012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060012.t1 | MTR_6g045467 | 92.457 | 464 | 19 | 2 | 1 | 464 | 1 | 448 | 0.0 | 825 |
| MS.gene060012.t1 | MTR_6g045467 | 92.457 | 464 | 19 | 2 | 1 | 464 | 1 | 448 | 0.0 | 825 |
| MS.gene060012.t1 | MTR_4g117360 | 85.501 | 469 | 64 | 1 | 1 | 465 | 1 | 469 | 0.0 | 785 |
| MS.gene060012.t1 | MTR_6g045467 | 92.417 | 422 | 16 | 2 | 1 | 422 | 1 | 406 | 0.0 | 778 |
| MS.gene060012.t1 | MTR_7g010900 | 68.017 | 469 | 137 | 4 | 1 | 464 | 1 | 461 | 0.0 | 632 |
| MS.gene060012.t1 | MTR_6g045467 | 90.909 | 363 | 17 | 2 | 102 | 464 | 3 | 349 | 0.0 | 627 |
| MS.gene060012.t1 | MTR_6g045467 | 90.909 | 363 | 17 | 2 | 102 | 464 | 3 | 349 | 0.0 | 627 |
| MS.gene060012.t1 | MTR_6g045467 | 91.436 | 362 | 15 | 2 | 103 | 464 | 1 | 346 | 0.0 | 626 |
| MS.gene060012.t1 | MTR_7g094620 | 63.785 | 428 | 135 | 7 | 22 | 436 | 26 | 446 | 0.0 | 519 |
| MS.gene060012.t1 | MTR_4g092610 | 55.825 | 412 | 162 | 5 | 37 | 434 | 18 | 423 | 8.27e-152 | 440 |
| MS.gene060012.t1 | MTR_2g010520 | 53.398 | 412 | 176 | 4 | 37 | 434 | 18 | 427 | 5.66e-140 | 410 |
| MS.gene060012.t1 | MTR_3g111830 | 46.272 | 456 | 212 | 6 | 27 | 459 | 9 | 454 | 3.51e-133 | 395 |
| MS.gene060012.t1 | MTR_2g010520 | 63.265 | 294 | 107 | 1 | 37 | 329 | 18 | 311 | 9.51e-133 | 387 |
| MS.gene060012.t1 | MTR_6g052300 | 45.455 | 429 | 207 | 6 | 27 | 441 | 15 | 430 | 1.55e-122 | 367 |
| MS.gene060012.t1 | MTR_6g051860 | 51.667 | 300 | 143 | 2 | 27 | 325 | 77 | 375 | 2.05e-107 | 326 |
| MS.gene060012.t1 | MTR_2g010520 | 63.223 | 242 | 88 | 1 | 37 | 277 | 18 | 259 | 1.44e-104 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060012.t1 | AT4G14240 | 74.273 | 447 | 102 | 4 | 22 | 465 | 26 | 462 | 0.0 | 621 |
| MS.gene060012.t1 | AT4G14230 | 69.778 | 450 | 129 | 2 | 18 | 465 | 21 | 465 | 0.0 | 620 |
| MS.gene060012.t1 | AT4G14240 | 72.931 | 447 | 99 | 5 | 22 | 465 | 26 | 453 | 0.0 | 598 |
| MS.gene060012.t1 | AT1G03270 | 67.431 | 436 | 119 | 5 | 13 | 436 | 15 | 439 | 0.0 | 565 |
| MS.gene060012.t1 | AT4G14240 | 72.826 | 368 | 87 | 4 | 101 | 465 | 1 | 358 | 1.08e-170 | 486 |
| MS.gene060012.t1 | AT4G33700 | 53.066 | 424 | 172 | 6 | 28 | 434 | 9 | 422 | 8.01e-144 | 419 |
| MS.gene060012.t1 | AT5G52790 | 52.278 | 417 | 171 | 7 | 24 | 438 | 6 | 396 | 1.08e-140 | 411 |
| MS.gene060012.t1 | AT5G52790 | 51.190 | 420 | 177 | 5 | 24 | 441 | 6 | 399 | 2.23e-140 | 414 |
| MS.gene060012.t1 | AT2G14520 | 52.206 | 408 | 189 | 3 | 30 | 434 | 11 | 415 | 2.30e-140 | 410 |
| MS.gene060012.t1 | AT1G47330 | 47.548 | 469 | 215 | 6 | 24 | 465 | 5 | 469 | 1.10e-138 | 410 |
| MS.gene060012.t1 | AT2G14520 | 51.449 | 414 | 189 | 4 | 30 | 434 | 11 | 421 | 1.81e-138 | 406 |
| MS.gene060012.t1 | AT2G14520 | 51.449 | 414 | 189 | 4 | 30 | 434 | 11 | 421 | 1.81e-138 | 406 |
| MS.gene060012.t1 | AT5G52790 | 51.621 | 401 | 166 | 7 | 24 | 422 | 6 | 380 | 5.97e-131 | 385 |
| MS.gene060012.t1 | AT5G52790 | 51.621 | 401 | 166 | 7 | 24 | 422 | 6 | 380 | 5.97e-131 | 385 |
| MS.gene060012.t1 | AT5G52790 | 51.365 | 403 | 168 | 7 | 24 | 424 | 6 | 382 | 2.05e-130 | 387 |
| MS.gene060012.t1 | AT4G33700 | 61.538 | 273 | 104 | 1 | 28 | 299 | 9 | 281 | 7.10e-118 | 348 |
| MS.gene060012.t1 | AT1G47330 | 46.684 | 377 | 173 | 5 | 101 | 450 | 1 | 376 | 1.24e-109 | 333 |
| MS.gene060012.t1 | AT4G33700 | 50.430 | 349 | 146 | 6 | 103 | 434 | 1 | 339 | 6.78e-107 | 322 |
| MS.gene060012.t1 | AT2G14520 | 49.267 | 341 | 161 | 4 | 103 | 434 | 1 | 338 | 7.77e-104 | 314 |
Find 106 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCCCAGGAATATTAT+TGG | 0.213736 | 6.3:+40395018 | MS.gene060012:CDS |
| CCATATGACTATTTCCCTTT+TGG | 0.240744 | 6.3:-40395353 | None:intergenic |
| CTGACAGGGGTCTCTGATTC+AGG | 0.253158 | 6.3:-40395174 | None:intergenic |
| TCTATGTAATGCTGTTTCTA+TGG | 0.263654 | 6.3:+40391953 | MS.gene060012:CDS |
| AGGCTACATGCCACGATTCT+TGG | 0.273665 | 6.3:+40396752 | MS.gene060012:CDS |
| GTCAAGCCTTCAAAGCTTAC+TGG | 0.302358 | 6.3:+40395534 | MS.gene060012:CDS |
| AAAGCTCTTGTCTCCATTCA+TGG | 0.311809 | 6.3:+40393307 | MS.gene060012:CDS |
| ACCAACGAAGGCATACCTTT+TGG | 0.342222 | 6.3:+40391343 | MS.gene060012:CDS |
| CAGGTTCTGGATTGCGTACT+GGG | 0.343310 | 6.3:+40393250 | MS.gene060012:intron |
| TCAGGTTCTGGATTGCGTAC+TGG | 0.343532 | 6.3:+40393249 | MS.gene060012:intron |
| AAAATCCCAGGAATATTATT+GGG | 0.347890 | 6.3:+40395019 | MS.gene060012:CDS |
| TAAAAGCCCAATAATATTCC+TGG | 0.351419 | 6.3:-40395025 | None:intergenic |
| TTATTGCCAGTAAGCTTTGA+AGG | 0.366582 | 6.3:-40395540 | None:intergenic |
| AAAGAAAATGTTGATTCAAT+AGG | 0.371631 | 6.3:-40393988 | None:intergenic |
| TACTCCATTGCTACAAGAAC+TGG | 0.375041 | 6.3:+40395479 | MS.gene060012:CDS |
| CTTGATTGAAGAGTTTATCT+AGG | 0.383532 | 6.3:-40392836 | None:intergenic |
| TCAGTCGACTTTCGGATTGA+TGG | 0.388930 | 6.3:-40395953 | None:intergenic |
| AAGAGTTTATCTAGGTATAG+AGG | 0.389663 | 6.3:-40392828 | None:intergenic |
| ATGTTACCCTCTTTCTTATC+CGG | 0.389771 | 6.3:+40393109 | MS.gene060012:CDS |
| ATCTCAAATCAGGGAGGCAT+TGG | 0.390658 | 6.3:+40394951 | MS.gene060012:intron |
| CCTTCTTACGAAAATATTCA+TGG | 0.392818 | 6.3:+40395606 | MS.gene060012:CDS |
| CAAGCAATTTGTAGTAGATA+TGG | 0.402882 | 6.3:+40393035 | MS.gene060012:CDS |
| AAGGACGGAATCACGGATAA+AGG | 0.410119 | 6.3:+40396732 | MS.gene060012:CDS |
| CCGCTTACCCTCTTGAGACT+TGG | 0.418833 | 6.3:-40396707 | None:intergenic |
| AATATGTTGACGTTCATAAC+AGG | 0.420073 | 6.3:+40395798 | MS.gene060012:CDS |
| AACAAGAAAACAGCATATTC+CGG | 0.426683 | 6.3:-40391389 | None:intergenic |
| TTTAGATGTTAATTCAAAGT+TGG | 0.434582 | 6.3:+40394008 | MS.gene060012:CDS |
| GGAACGACGAGGCTTTATTT+AGG | 0.438067 | 6.3:+40393272 | MS.gene060012:CDS |
| CACTACGTTCAAGAATTTCA+AGG | 0.449665 | 6.3:-40391471 | None:intergenic |
| AATATTCATGGTGAAGTGAT+TGG | 0.459543 | 6.3:+40395618 | MS.gene060012:CDS |
| CCAAAAGGGAAATAGTCATA+TGG | 0.467713 | 6.3:+40395353 | MS.gene060012:CDS |
| GTCATGTCCGGTCTCACCCT+TGG | 0.469139 | 6.3:+40391424 | MS.gene060012:CDS |
| TTATACCTCCATGCCATGAA+TGG | 0.470063 | 6.3:-40393320 | None:intergenic |
| CTCTTCGCCGGAGTCATGTC+CGG | 0.471245 | 6.3:+40391412 | MS.gene060012:CDS |
| GTAGAATTTACCTTTCCAAC+CGG | 0.473889 | 6.3:-40393128 | None:intergenic |
| TACCCTCTTTCTTATCCGGT+TGG | 0.476027 | 6.3:+40393113 | MS.gene060012:CDS |
| TATACTGAACGAGTTCCAAA+AGG | 0.480137 | 6.3:+40395338 | MS.gene060012:CDS |
| CGGATAGATACTGCACTGAC+AGG | 0.486816 | 6.3:-40395189 | None:intergenic |
| CAGGAACTCGGCTGTGCCCA+CGG | 0.490739 | 6.3:-40394987 | None:intergenic |
| AGTGATTGGTATTATCACTT+TGG | 0.495868 | 6.3:+40395632 | MS.gene060012:CDS |
| CTGTCAGTGCAGTATCTATC+CGG | 0.501210 | 6.3:+40395190 | MS.gene060012:CDS |
| AGTTGCAGCTGCTTCCTCAA+TGG | 0.501520 | 6.3:+40395922 | MS.gene060012:CDS |
| GTTGTGAAGACTACCGGAAA+AGG | 0.512912 | 6.3:+40395381 | MS.gene060012:CDS |
| ATGTTAATTCAAAGTTGGAC+TGG | 0.514990 | 6.3:+40394013 | MS.gene060012:CDS |
| TCTCAAATCAGGGAGGCATT+GGG | 0.517004 | 6.3:+40394952 | MS.gene060012:intron |
| GAATCCAGTTCTTGTAGCAA+TGG | 0.517698 | 6.3:-40395483 | None:intergenic |
| CTCAAGAGGGTAAGCGGGAA+AGG | 0.520366 | 6.3:+40396713 | MS.gene060012:CDS |
| CATGAGACCAAGGGTGAGAC+CGG | 0.520568 | 6.3:-40391431 | None:intergenic |
| TTCTCTTCATCAATTAGTTG+CGG | 0.525530 | 6.3:-40395414 | None:intergenic |
| AGCACTTGATTTGACCGAAA+AGG | 0.528383 | 6.3:+40393504 | MS.gene060012:CDS |
| GAAGTAAAGTAACAAGAAGC+TGG | 0.529515 | 6.3:-40391932 | None:intergenic |
| AGGAACTCGGCTGTGCCCAC+GGG | 0.532571 | 6.3:-40394986 | None:intergenic |
| ACGCACAAGCCATGAAAAGT+TGG | 0.534177 | 6.3:-40393072 | None:intergenic |
| TCGTTCAGTATATCGTATAG+AGG | 0.534507 | 6.3:-40395327 | None:intergenic |
| AAAAGCCCAATAATATTCCT+GGG | 0.537470 | 6.3:-40395024 | None:intergenic |
| AGCGGGAAAGGACGGAATCA+CGG | 0.544015 | 6.3:+40396725 | MS.gene060012:CDS |
| AAACACACCGTGGTATTCTC+CGG | 0.544224 | 6.3:-40395209 | None:intergenic |
| CAAGTCTCAAGAGGGTAAGC+GGG | 0.547190 | 6.3:+40396708 | MS.gene060012:CDS |
| AGTAGATATGGTCTCGCTGT+AGG | 0.551405 | 6.3:+40393047 | MS.gene060012:CDS |
| CTGTCTATTCTCAAAATCCC+AGG | 0.554478 | 6.3:+40395007 | MS.gene060012:CDS |
| TCTTTCTTATCCGGTTGGAA+AGG | 0.558257 | 6.3:+40393118 | MS.gene060012:CDS |
| TGCCTTCGTTGGTGAGAGCA+AGG | 0.559592 | 6.3:-40391333 | None:intergenic |
| TTTGATGCAAAGAAAAGTGT+TGG | 0.562539 | 6.3:+40395438 | MS.gene060012:CDS |
| TCGTATAGAGGCATATCAGA+TGG | 0.565213 | 6.3:-40395315 | None:intergenic |
| TATCTACTACAAATTGCTTG+TGG | 0.565273 | 6.3:-40393032 | None:intergenic |
| ATCCATGTTGCAGATCCAAA+AGG | 0.568878 | 6.3:-40391358 | None:intergenic |
| TGATGGAGCTCGTGCCATTG+AGG | 0.569237 | 6.3:-40395936 | None:intergenic |
| CTTGAAATTCTTGAACGTAG+TGG | 0.572868 | 6.3:+40391472 | MS.gene060012:CDS |
| TCCAAAAGGTATGCCTTCGT+TGG | 0.579698 | 6.3:-40391344 | None:intergenic |
| TTTCCAACCGGATAAGAAAG+AGG | 0.579776 | 6.3:-40393116 | None:intergenic |
| ATGTAATGCTGTTTCTATGG+AGG | 0.583032 | 6.3:+40391956 | MS.gene060012:CDS |
| TTGGATGCAGGAAGAAATTG+TGG | 0.584566 | 6.3:+40395763 | MS.gene060012:intron |
| TTGGGAAAGATTCTTGCCCG+TGG | 0.586262 | 6.3:+40394970 | MS.gene060012:CDS |
| AGAGGGTAAGCGGGAAAGGA+CGG | 0.587640 | 6.3:+40396717 | MS.gene060012:CDS |
| GGATAGATACTGCACTGACA+GGG | 0.588476 | 6.3:-40395188 | None:intergenic |
| GCTGCTGTTGTGAAGACTAC+CGG | 0.588617 | 6.3:+40395375 | MS.gene060012:CDS |
| TGGGAAAGATTCTTGCCCGT+GGG | 0.591293 | 6.3:+40394971 | MS.gene060012:CDS |
| CCAAGTCTCAAGAGGGTAAG+CGG | 0.593536 | 6.3:+40396707 | MS.gene060012:CDS |
| GGTGAGACCGGACATGACTC+CGG | 0.594389 | 6.3:-40391419 | None:intergenic |
| ACTAGTTTGCAGAGTAGTGA+TGG | 0.595827 | 6.3:+40395570 | MS.gene060012:CDS |
| TGCAGCGATCATTCTTCCCG+TGG | 0.596464 | 6.3:+40391896 | MS.gene060012:intron |
| ATACTGAACGAGTTCCAAAA+GGG | 0.596540 | 6.3:+40395339 | MS.gene060012:CDS |
| TACATGCCACGATTCTTGGA+AGG | 0.597057 | 6.3:+40396756 | MS.gene060012:CDS |
| ATGCAAAGAAAAGTGTTGGT+GGG | 0.598862 | 6.3:+40395442 | MS.gene060012:CDS |
| AGTAGTGATGGCACATTAAG+CGG | 0.599766 | 6.3:+40395582 | MS.gene060012:CDS |
| TCTTGTCTCCATTCATGGCA+TGG | 0.603983 | 6.3:+40393312 | MS.gene060012:CDS |
| TGCAAAGAAAAGTGTTGGTG+GGG | 0.604810 | 6.3:+40395443 | MS.gene060012:CDS |
| GATACTGACCAAGTCTCAAG+AGG | 0.614166 | 6.3:+40396699 | MS.gene060012:CDS |
| GACTGAGAGACATGAGACCA+AGG | 0.614337 | 6.3:-40391441 | None:intergenic |
| TTCCAACCGGATAAGAAAGA+GGG | 0.628963 | 6.3:-40393115 | None:intergenic |
| ACATGCCACGATTCTTGGAA+GGG | 0.632428 | 6.3:+40396757 | MS.gene060012:CDS |
| CACCTTGCTCTCACCAACGA+AGG | 0.637959 | 6.3:+40391331 | MS.gene060012:CDS |
| GATGCAAAGAAAAGTGTTGG+TGG | 0.638703 | 6.3:+40395441 | MS.gene060012:CDS |
| GATGAGACAACAATTATCAG+TGG | 0.641472 | 6.3:+40393481 | MS.gene060012:CDS |
| TGTCTCCATTCATGGCATGG+AGG | 0.641880 | 6.3:+40393315 | MS.gene060012:CDS |
| TTCCGCCCTTCCAAGAATCG+TGG | 0.653042 | 6.3:-40396762 | None:intergenic |
| TGCCACGATTCTTGGAAGGG+CGG | 0.655557 | 6.3:+40396760 | MS.gene060012:CDS |
| AGGTTCTGGATTGCGTACTG+GGG | 0.664585 | 6.3:+40393251 | MS.gene060012:intron |
| GATAGATACTGCACTGACAG+GGG | 0.670187 | 6.3:-40395187 | None:intergenic |
| GCAACATGGATTGCTTACGC+CGG | 0.670459 | 6.3:+40391370 | MS.gene060012:CDS |
| ACTGAGAGACATGAGACCAA+GGG | 0.671514 | 6.3:-40391440 | None:intergenic |
| TTTGAGAATAGACAGGAACT+CGG | 0.672689 | 6.3:-40394999 | None:intergenic |
| ATACTGACCAAGTCTCAAGA+GGG | 0.700733 | 6.3:+40396700 | MS.gene060012:CDS |
| CTTCGTTGGTGAGAGCAAGG+TGG | 0.701135 | 6.3:-40391330 | None:intergenic |
| TTGCGTACTGGGGAACGACG+AGG | 0.706727 | 6.3:+40393261 | MS.gene060012:CDS |
| TATCTATCCGGAGAATACCA+CGG | 0.709255 | 6.3:+40395202 | MS.gene060012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAAGAAACTATT+GGG | - | chr6.3:40391551-40391570 | None:intergenic | 10.0% |
| !! | AAATTCCAATTTATTTATAA+TGG | + | chr6.3:40395275-40395294 | MS.gene060012:intron | 10.0% |
| !! | ATATACCATTATAAATAAAT+TGG | - | chr6.3:40395283-40395302 | None:intergenic | 10.0% |
| !! | TAAATAATTAAAGAAACTAT+TGG | - | chr6.3:40391552-40391571 | None:intergenic | 10.0% |
| !!! | AGATTTTAAAACAATATTAT+AGG | + | chr6.3:40396232-40396251 | MS.gene060012:intron | 10.0% |
| !! | TAATAGTATTATATGAAACA+CGG | + | chr6.3:40391574-40391593 | MS.gene060012:intron | 15.0% |
| !!! | ATAAAAATCTTGTTTTGTAT+TGG | - | chr6.3:40394686-40394705 | None:intergenic | 15.0% |
| !!! | GTATTGTTTATAAGTTTTTA+AGG | - | chr6.3:40392318-40392337 | None:intergenic | 15.0% |
| !!! | TAAAAATCTTGTTTTGTATT+GGG | - | chr6.3:40394685-40394704 | None:intergenic | 15.0% |
| !! | AAAACATAGAAATTACTAGA+TGG | - | chr6.3:40393933-40393952 | None:intergenic | 20.0% |
| !! | AAATTTGTAGAAATTTGTAG+AGG | - | chr6.3:40392492-40392511 | None:intergenic | 20.0% |
| !! | AATTCTAAACTTGAATTGAA+GGG | + | chr6.3:40396145-40396164 | MS.gene060012:intron | 20.0% |
| !! | AATTTGTAGAAATTTGTAGA+GGG | - | chr6.3:40392491-40392510 | None:intergenic | 20.0% |
| !! | AGTTAATTCTTAAGATATTG+AGG | - | chr6.3:40396403-40396422 | None:intergenic | 20.0% |
| !! | ATATCTTAAGAATTAACTCT+TGG | + | chr6.3:40396405-40396424 | MS.gene060012:intron | 20.0% |
| !! | ATCTAAAAAATTCAAACATC+CGG | + | chr6.3:40394542-40394561 | MS.gene060012:intron | 20.0% |
| !! | GAAAATTGTATCTTCATAAA+CGG | + | chr6.3:40392276-40392295 | MS.gene060012:intron | 20.0% |
| !! | GACAAGTTATTATTATTAGT+TGG | - | chr6.3:40392993-40393012 | None:intergenic | 20.0% |
| !! | TAATTCTAAACTTGAATTGA+AGG | + | chr6.3:40396144-40396163 | MS.gene060012:intron | 20.0% |
| !! | TATAATGGTATATATTTGCA+GGG | + | chr6.3:40395290-40395309 | MS.gene060012:intron | 20.0% |
| !! | TTAATTATACAGTTAAGTGA+AGG | + | chr6.3:40396357-40396376 | MS.gene060012:intron | 20.0% |
| !! | TTATAATGGTATATATTTGC+AGG | + | chr6.3:40395289-40395308 | MS.gene060012:intron | 20.0% |
| !! | TTGTTGAATTAAATATGACT+TGG | - | chr6.3:40396314-40396333 | None:intergenic | 20.0% |
| !! | TTTAGATGTTAATTCAAAGT+TGG | + | chr6.3:40394008-40394027 | MS.gene060012:CDS | 20.0% |
| !! | TTTCAAATTATTTACTGTGT+CGG | + | chr6.3:40391831-40391850 | MS.gene060012:intron | 20.0% |
| !!! | AAAGAAAATGTTGATTCAAT+AGG | - | chr6.3:40393991-40394010 | None:intergenic | 20.0% |
| !!! | CAACAATAAATATTTTCCAA+TGG | - | chr6.3:40394813-40394832 | None:intergenic | 20.0% |
| !!! | CAATTGATAGTATTAATACA+TGG | - | chr6.3:40392549-40392568 | None:intergenic | 20.0% |
| !!! | GATAAACATTGTTTTGTAAA+TGG | - | chr6.3:40392465-40392484 | None:intergenic | 20.0% |
| !!! | TTATGTTTTGTCATAGAAAT+AGG | + | chr6.3:40392141-40392160 | MS.gene060012:intron | 20.0% |
| !!! | TTTTCAGGAAAATAAAATAG+TGG | - | chr6.3:40394917-40394936 | None:intergenic | 20.0% |
| ! | AAAATCCCAGGAATATTATT+GGG | + | chr6.3:40395019-40395038 | MS.gene060012:CDS | 25.0% |
| ! | AAATTTATAAAAACACACCG+TGG | - | chr6.3:40395222-40395241 | None:intergenic | 25.0% |
| ! | AACTGAATGAAATTATCTCT+TGG | + | chr6.3:40395744-40395763 | MS.gene060012:intron | 25.0% |
| ! | AATAAGCTAATCCTAGTTTA+TGG | + | chr6.3:40392383-40392402 | MS.gene060012:intron | 25.0% |
| ! | AATAGTCAACGCATTAAAAA+TGG | - | chr6.3:40391302-40391321 | None:intergenic | 25.0% |
| ! | ATGCTCTTTATACAAACATA+TGG | - | chr6.3:40393886-40393905 | None:intergenic | 25.0% |
| ! | ATTCTAAACTTGAATTGAAG+GGG | + | chr6.3:40396146-40396165 | MS.gene060012:intron | 25.0% |
| ! | CATAACAATAAGTCATAAAG+AGG | - | chr6.3:40394755-40394774 | None:intergenic | 25.0% |
| ! | CATGTATTAAGAAAAGTTGT+TGG | - | chr6.3:40392661-40392680 | None:intergenic | 25.0% |
| ! | GAAGAAATACTAAAAACCAA+GGG | - | chr6.3:40395715-40395734 | None:intergenic | 25.0% |
| ! | TCTAAAAAATTCAAACATCC+GGG | + | chr6.3:40394543-40394562 | MS.gene060012:intron | 25.0% |
| ! | TTAACTAGTGTCTTCTATTT+GGG | + | chr6.3:40393661-40393680 | MS.gene060012:intron | 25.0% |
| ! | TTATAAATTTATTCTCGTCG+CGG | + | chr6.3:40395232-40395251 | MS.gene060012:intron | 25.0% |
| ! | TTCATTGTAATTACAAGTGT+CGG | - | chr6.3:40391778-40391797 | None:intergenic | 25.0% |
| ! | TTGCATATATCTTACATGTA+GGG | - | chr6.3:40394861-40394880 | None:intergenic | 25.0% |
| ! | TTTAACTAGTGTCTTCTATT+TGG | + | chr6.3:40393660-40393679 | MS.gene060012:intron | 25.0% |
| ! | TTTGCATATATCTTACATGT+AGG | - | chr6.3:40394862-40394881 | None:intergenic | 25.0% |
| !! | ATAGGAAAGTTGATTTCATT+TGG | - | chr6.3:40396044-40396063 | None:intergenic | 25.0% |
| !! | TACATTATCTCATTCCTTTT+AGG | + | chr6.3:40395081-40395100 | MS.gene060012:intron | 25.0% |
| !! | TAGGAAAGTTGATTTCATTT+GGG | - | chr6.3:40396043-40396062 | None:intergenic | 25.0% |
| !! | TTGTTATTCTTCAGTATGTT+AGG | + | chr6.3:40394057-40394076 | MS.gene060012:intron | 25.0% |
| !! | TTTGTGCTTAATGCTTTTAA+TGG | - | chr6.3:40396203-40396222 | None:intergenic | 25.0% |
| !!! | AAATTTATGAAGCACTGATA+CGG | - | chr6.3:40391869-40391888 | None:intergenic | 25.0% |
| !!! | AATGGTCTTGTAATTAGAAT+TGG | - | chr6.3:40392447-40392466 | None:intergenic | 25.0% |
| !!! | ATTTAACCTGCTTGTTTTTA+AGG | + | chr6.3:40393432-40393451 | MS.gene060012:intron | 25.0% |
| !!! | GTTACTTTCGTTCTTTTTTT+CGG | + | chr6.3:40392879-40392898 | MS.gene060012:CDS | 25.0% |
| !!! | TGAGAAAATGCTTCATTTTT+GGG | + | chr6.3:40396069-40396088 | MS.gene060012:intron | 25.0% |
| !!! | TTGAATTTTTTAGATGTGTG+AGG | - | chr6.3:40394537-40394556 | None:intergenic | 25.0% |
| AAAAGCCCAATAATATTCCT+GGG | - | chr6.3:40395027-40395046 | None:intergenic | 30.0% | |
| AAAGAAACTATTGGGTTAAG+AGG | - | chr6.3:40391543-40391562 | None:intergenic | 30.0% | |
| AACAAGAAAACAGCATATTC+CGG | - | chr6.3:40391392-40391411 | None:intergenic | 30.0% | |
| AACAGCTTTCAAACAAACAA+AGG | - | chr6.3:40392058-40392077 | None:intergenic | 30.0% | |
| AACCTGAAACAAATATTCGT+TGG | - | chr6.3:40393236-40393255 | None:intergenic | 30.0% | |
| AAGAGTTTATCTAGGTATAG+AGG | - | chr6.3:40392831-40392850 | None:intergenic | 30.0% | |
| AATATGTTGACGTTCATAAC+AGG | + | chr6.3:40395798-40395817 | MS.gene060012:CDS | 30.0% | |
| AATATTCATGGTGAAGTGAT+TGG | + | chr6.3:40395618-40395637 | MS.gene060012:CDS | 30.0% | |
| AATGATGTTGGAAATGGAAT+AGG | + | chr6.3:40393700-40393719 | MS.gene060012:intron | 30.0% | |
| AGAACTTCGTAAAATTGCTT+AGG | - | chr6.3:40392966-40392985 | None:intergenic | 30.0% | |
| AGAGGAAGAAAATGAAATCT+TGG | - | chr6.3:40394737-40394756 | None:intergenic | 30.0% | |
| AGTGATTGGTATTATCACTT+TGG | + | chr6.3:40395632-40395651 | MS.gene060012:CDS | 30.0% | |
| ATATATGCAAAACATATGCG+TGG | + | chr6.3:40394871-40394890 | MS.gene060012:intron | 30.0% | |
| ATATTTATCAATGTGCCATG+CGG | + | chr6.3:40393740-40393759 | MS.gene060012:intron | 30.0% | |
| ATCCAACGAATATTTGTTTC+AGG | + | chr6.3:40393231-40393250 | MS.gene060012:intron | 30.0% | |
| ATGATGTTGGAAATGGAATA+GGG | + | chr6.3:40393701-40393720 | MS.gene060012:intron | 30.0% | |
| ATGTTAATTCAAAGTTGGAC+TGG | + | chr6.3:40394013-40394032 | MS.gene060012:CDS | 30.0% | |
| CAAAATCCCAGGAATATTAT+TGG | + | chr6.3:40395018-40395037 | MS.gene060012:CDS | 30.0% | |
| CAAGCAATTTGTAGTAGATA+TGG | + | chr6.3:40393035-40393054 | MS.gene060012:CDS | 30.0% | |
| CACTAGTTAAAACTCAAGAT+AGG | - | chr6.3:40393651-40393670 | None:intergenic | 30.0% | |
| CCTTCTTACGAAAATATTCA+TGG | + | chr6.3:40395606-40395625 | MS.gene060012:CDS | 30.0% | |
| CTAAAAAATTCAAACATCCG+GGG | + | chr6.3:40394544-40394563 | MS.gene060012:intron | 30.0% | |
| CTTGATTGAAGAGTTTATCT+AGG | - | chr6.3:40392839-40392858 | None:intergenic | 30.0% | |
| GAAACAAATATTCGTTGGAT+AGG | - | chr6.3:40393231-40393250 | None:intergenic | 30.0% | |
| GATACTATACACAAGTGATA+TGG | + | chr6.3:40395833-40395852 | MS.gene060012:intron | 30.0% | |
| GATTCACAATTGATTGTGAA+AGG | - | chr6.3:40393546-40393565 | None:intergenic | 30.0% | |
| GGAAGAAATACTAAAAACCA+AGG | - | chr6.3:40395716-40395735 | None:intergenic | 30.0% | |
| GTCTTGTAATTAGAATTGGA+GGG | - | chr6.3:40392443-40392462 | None:intergenic | 30.0% | |
| GTTAGATGTTCCGATAAAAA+GGG | + | chr6.3:40392689-40392708 | MS.gene060012:intron | 30.0% | |
| TAAAAGCCCAATAATATTCC+TGG | - | chr6.3:40395028-40395047 | None:intergenic | 30.0% | |
| TAAAGAGTGATGACTTTGTA+GGG | - | chr6.3:40394609-40394628 | None:intergenic | 30.0% | |
| TATCTACTACAAATTGCTTG+TGG | - | chr6.3:40393035-40393054 | None:intergenic | 30.0% | |
| TGACGAAAAAAGAACCTAAA+AGG | - | chr6.3:40395098-40395117 | None:intergenic | 30.0% | |
| TGCATATATCTTACATGTAG+GGG | - | chr6.3:40394860-40394879 | None:intergenic | 30.0% | |
| TGGGCTATATTTCTTATGAT+GGG | - | chr6.3:40396431-40396450 | None:intergenic | 30.0% | |
| TGTTAGATGTTCCGATAAAA+AGG | + | chr6.3:40392688-40392707 | MS.gene060012:intron | 30.0% | |
| TTCTCTTCATCAATTAGTTG+CGG | - | chr6.3:40395417-40395436 | None:intergenic | 30.0% | |
| TTGGGCTATATTTCTTATGA+TGG | - | chr6.3:40396432-40396451 | None:intergenic | 30.0% | |
| ! | ATATAAGGCTGGAATTTTCA+TGG | - | chr6.3:40396271-40396290 | None:intergenic | 30.0% |
| ! | ATTTCATTCAGTTTTCTGTG+CGG | - | chr6.3:40395737-40395756 | None:intergenic | 30.0% |
| ! | CCATGAATATTTTCGTAAGA+AGG | - | chr6.3:40395609-40395628 | None:intergenic | 30.0% |
| ! | CTGAGAAAATGCTTCATTTT+TGG | + | chr6.3:40396068-40396087 | MS.gene060012:intron | 30.0% |
| ! | TTTGATGCAAAGAAAAGTGT+TGG | + | chr6.3:40395438-40395457 | MS.gene060012:CDS | 30.0% |
| ! | TTTTCCAATGGTCTAGTAAT+TGG | - | chr6.3:40394801-40394820 | None:intergenic | 30.0% |
| !! | AAAATAAGTCTTGTCGACTT+TGG | + | chr6.3:40393365-40393384 | MS.gene060012:intron | 30.0% |
| !! | GGAATTTTTCACAGTTTGTT+TGG | - | chr6.3:40395262-40395281 | None:intergenic | 30.0% |
| !! | TCTATGTAATGCTGTTTCTA+TGG | + | chr6.3:40391953-40391972 | MS.gene060012:CDS | 30.0% |
| AAAGAGTGATGACTTTGTAG+GGG | - | chr6.3:40394608-40394627 | None:intergenic | 35.0% | |
| AACACCAATTACTAGACCAT+TGG | + | chr6.3:40394794-40394813 | MS.gene060012:intron | 35.0% | |
| ACAAGCACTTACCATAAACT+AGG | - | chr6.3:40392397-40392416 | None:intergenic | 35.0% | |
| AGCATCAATGATGTTGGAAA+TGG | + | chr6.3:40393694-40393713 | MS.gene060012:intron | 35.0% | |
| ATACATTCTCGTGCATACTT+GGG | + | chr6.3:40393815-40393834 | MS.gene060012:intron | 35.0% | |
| ATACTGAACGAGTTCCAAAA+GGG | + | chr6.3:40395339-40395358 | MS.gene060012:CDS | 35.0% | |
| ATAGTACAGATGTTGTTCCA+TGG | + | chr6.3:40393154-40393173 | MS.gene060012:intron | 35.0% | |
| ATATATCTTACATGTAGGGG+TGG | - | chr6.3:40394857-40394876 | None:intergenic | 35.0% | |
| ATATGATCACTGGAAGTGAA+CGG | - | chr6.3:40393783-40393802 | None:intergenic | 35.0% | |
| ATGTTACCCTCTTTCTTATC+CGG | + | chr6.3:40393109-40393128 | MS.gene060012:CDS | 35.0% | |
| ATTGGACATTTGAAAGCCAA+TGG | - | chr6.3:40392796-40392815 | None:intergenic | 35.0% | |
| CACTACGTTCAAGAATTTCA+AGG | - | chr6.3:40391474-40391493 | None:intergenic | 35.0% | |
| CAGTGTAATTACAAGTGTGT+CGG | - | chr6.3:40391640-40391659 | None:intergenic | 35.0% | |
| CCAAAAGGGAAATAGTCATA+TGG | + | chr6.3:40395353-40395372 | MS.gene060012:CDS | 35.0% | |
| CGAAAGTCGACTGAAAAAAA+GGG | + | chr6.3:40395962-40395981 | MS.gene060012:CDS | 35.0% | |
| CTATTCTCGTATATAGACGA+TGG | + | chr6.3:40393190-40393209 | MS.gene060012:intron | 35.0% | |
| CTTCCAACAAATGACTGAAT+TGG | + | chr6.3:40394080-40394099 | MS.gene060012:intron | 35.0% | |
| CTTGAAATTCTTGAACGTAG+TGG | + | chr6.3:40391472-40391491 | MS.gene060012:CDS | 35.0% | |
| CTTTCAAATGTCCAATATGC+AGG | + | chr6.3:40392800-40392819 | MS.gene060012:intron | 35.0% | |
| GAAAAAAAGGGATCAGTAAG+TGG | + | chr6.3:40395974-40395993 | MS.gene060012:intron | 35.0% | |
| GAAGTAAAGTAACAAGAAGC+TGG | - | chr6.3:40391935-40391954 | None:intergenic | 35.0% | |
| GATGAGACAACAATTATCAG+TGG | + | chr6.3:40393481-40393500 | MS.gene060012:CDS | 35.0% | |
| GTAAAGAGTGATGACTTTGT+AGG | - | chr6.3:40394610-40394629 | None:intergenic | 35.0% | |
| GTAGAATTTACCTTTCCAAC+CGG | - | chr6.3:40393131-40393150 | None:intergenic | 35.0% | |
| TATACTGAACGAGTTCCAAA+AGG | + | chr6.3:40395338-40395357 | MS.gene060012:CDS | 35.0% | |
| TCGTTCAGTATATCGTATAG+AGG | - | chr6.3:40395330-40395349 | None:intergenic | 35.0% | |
| TGAAATTATCTCTTGGATGC+AGG | + | chr6.3:40395751-40395770 | MS.gene060012:intron | 35.0% | |
| TGATAAGCGCTTATTCTCTA+AGG | + | chr6.3:40392174-40392193 | MS.gene060012:intron | 35.0% | |
| TTCACAAGCTCAAACCAAAT+GGG | - | chr6.3:40392201-40392220 | None:intergenic | 35.0% | |
| TTGCTATCTTTGTACTTCAC+TGG | + | chr6.3:40392921-40392940 | MS.gene060012:intron | 35.0% | |
| TTTACCAAGAGCAATGACTT+GGG | + | chr6.3:40394625-40394644 | MS.gene060012:intron | 35.0% | |
| TTTCACAAGCTCAAACCAAA+TGG | - | chr6.3:40392202-40392221 | None:intergenic | 35.0% | |
| TTTCGTGTTTCTCTGTTGTA+TGG | + | chr6.3:40396108-40396127 | MS.gene060012:intron | 35.0% | |
| TTTGAGAATAGACAGGAACT+CGG | - | chr6.3:40395002-40395021 | None:intergenic | 35.0% | |
| ! | AAGCATTTTCTCAGCTCAAT+AGG | - | chr6.3:40396062-40396081 | None:intergenic | 35.0% |
| ! | AATTGCAGCACTTACCTTTT+CGG | - | chr6.3:40393521-40393540 | None:intergenic | 35.0% |
| ! | CCATATGACTATTTCCCTTT+TGG | - | chr6.3:40395356-40395375 | None:intergenic | 35.0% |
| ! | GGTCTTGTAATTAGAATTGG+AGG | - | chr6.3:40392444-40392463 | None:intergenic | 35.0% |
| ! | TAGGCAGGATAAAAGTTTTC+AGG | - | chr6.3:40394932-40394951 | None:intergenic | 35.0% |
| ! | TCATCTAGTGGGTATTCATA+TGG | - | chr6.3:40394406-40394425 | None:intergenic | 35.0% |
| ! | TTATTGCCAGTAAGCTTTGA+AGG | - | chr6.3:40395543-40395562 | None:intergenic | 35.0% |
| ! | TTCGTTGGATAGGTAGTTTT+CGG | - | chr6.3:40393221-40393240 | None:intergenic | 35.0% |
| !! | ATGCAAAGAAAAGTGTTGGT+GGG | + | chr6.3:40395442-40395461 | MS.gene060012:CDS | 35.0% |
| !! | ATGTAATGCTGTTTCTATGG+AGG | + | chr6.3:40391956-40391975 | MS.gene060012:CDS | 35.0% |
| !! | CAATGCCTTTCTGGAATATA+AGG | - | chr6.3:40396286-40396305 | None:intergenic | 35.0% |
| !! | CGAATATTTGTTTCAGGTTC+TGG | + | chr6.3:40393237-40393256 | MS.gene060012:intron | 35.0% |
| !!! | CCTTTTTTTCAGTCGACTTT+CGG | - | chr6.3:40395964-40395983 | None:intergenic | 35.0% |
| !!! | CTGGTGTTGTTTTTTAACCA+CGG | - | chr6.3:40391916-40391935 | None:intergenic | 35.0% |
| !!! | TGGTGTTGTTTTTTAACCAC+GGG | - | chr6.3:40391915-40391934 | None:intergenic | 35.0% |
| !!! | TTGTTTTTAAGGCTGGGAAA+GGG | + | chr6.3:40393443-40393462 | MS.gene060012:intron | 35.0% |
| !!! | TTTCGTTCTTTTTTTCGGTG+AGG | + | chr6.3:40392884-40392903 | MS.gene060012:CDS | 35.0% |
| AAAGCTCTTGTCTCCATTCA+TGG | + | chr6.3:40393307-40393326 | MS.gene060012:CDS | 40.0% | |
| ACTATTGGGTTAAGAGGAAG+AGG | - | chr6.3:40391537-40391556 | None:intergenic | 40.0% | |
| AGAAAGGTGACAGCTTAAGT+TGG | + | chr6.3:40396501-40396520 | MS.gene060012:intron | 40.0% | |
| AGTATCACGTGTTTATCCTG+TGG | - | chr6.3:40396685-40396704 | None:intergenic | 40.0% | |
| ATACTGACCAAGTCTCAAGA+GGG | + | chr6.3:40396700-40396719 | MS.gene060012:CDS | 40.0% | |
| ATCCATGTTGCAGATCCAAA+AGG | - | chr6.3:40391361-40391380 | None:intergenic | 40.0% | |
| ATCCTGCCTATCTCAAATCA+GGG | + | chr6.3:40394942-40394961 | MS.gene060012:intron | 40.0% | |
| ATGCCGCACAAATTCTATCA+TGG | - | chr6.3:40394122-40394141 | None:intergenic | 40.0% | |
| ATGTTGGGCTATGTCCATTA+TGG | - | chr6.3:40396465-40396484 | None:intergenic | 40.0% | |
| CAAAGAGTTAGGCAGGTTTA+GGG | - | chr6.3:40392769-40392788 | None:intergenic | 40.0% | |
| CATACATTCTCGTGCATACT+TGG | + | chr6.3:40393814-40393833 | MS.gene060012:intron | 40.0% | |
| CCGAAAGTCGACTGAAAAAA+AGG | + | chr6.3:40395961-40395980 | MS.gene060012:CDS | 40.0% | |
| CCTTCTCAGAAAAAACAAGC+TGG | + | chr6.3:40391499-40391518 | MS.gene060012:CDS | 40.0% | |
| CGATCATGGTAGAATTTGTG+CGG | + | chr6.3:40394195-40394214 | MS.gene060012:intron | 40.0% | |
| CGTCCATGATAGAATTTGTG+CGG | + | chr6.3:40394116-40394135 | MS.gene060012:intron | 40.0% | |
| CTAACGGAACATATGATCAC+TGG | - | chr6.3:40393793-40393812 | None:intergenic | 40.0% | |
| CTAGATGATCGTTTCAACCA+TGG | + | chr6.3:40394418-40394437 | MS.gene060012:intron | 40.0% | |
| CTGTCTATTCTCAAAATCCC+AGG | + | chr6.3:40395007-40395026 | MS.gene060012:CDS | 40.0% | |
| CTTTACCAAGAGCAATGACT+TGG | + | chr6.3:40394624-40394643 | MS.gene060012:intron | 40.0% | |
| GAAAGGTGACAGCTTAAGTT+GGG | + | chr6.3:40396502-40396521 | MS.gene060012:intron | 40.0% | |
| GAACATGCTCAATCTATCAC+AGG | + | chr6.3:40394486-40394505 | MS.gene060012:intron | 40.0% | |
| GAATCCAGTTCTTGTAGCAA+TGG | - | chr6.3:40395486-40395505 | None:intergenic | 40.0% | |
| GAGCCAATTCAGTCATTTGT+TGG | - | chr6.3:40394086-40394105 | None:intergenic | 40.0% | |
| GCACGAGAATGTATGACTAA+CGG | - | chr6.3:40393809-40393828 | None:intergenic | 40.0% | |
| GCATACCGGGAAAAAAATCT+CGG | + | chr6.3:40396566-40396585 | MS.gene060012:intron | 40.0% | |
| GGTTGAAACGATCATCTAGT+GGG | - | chr6.3:40394417-40394436 | None:intergenic | 40.0% | |
| GTATCACGTGTTTATCCTGT+GGG | - | chr6.3:40396684-40396703 | None:intergenic | 40.0% | |
| TACTCCATTGCTACAAGAAC+TGG | + | chr6.3:40395479-40395498 | MS.gene060012:CDS | 40.0% | |
| TATCACGTGTTTATCCTGTG+GGG | - | chr6.3:40396683-40396702 | None:intergenic | 40.0% | |
| TATCCTGCCTATCTCAAATC+AGG | + | chr6.3:40394941-40394960 | MS.gene060012:intron | 40.0% | |
| TATCTATCCGGAGAATACCA+CGG | + | chr6.3:40395202-40395221 | MS.gene060012:CDS | 40.0% | |
| TCAAAGAGTTAGGCAGGTTT+AGG | - | chr6.3:40392770-40392789 | None:intergenic | 40.0% | |
| TCACAAGCTCAAACCAAATG+GGG | - | chr6.3:40392200-40392219 | None:intergenic | 40.0% | |
| TCATGTGACTGTGTGATGTT+GGG | - | chr6.3:40396480-40396499 | None:intergenic | 40.0% | |
| TCTTTCTTATCCGGTTGGAA+AGG | + | chr6.3:40393118-40393137 | MS.gene060012:CDS | 40.0% | |
| TGGTTGAAACGATCATCTAG+TGG | - | chr6.3:40394418-40394437 | None:intergenic | 40.0% | |
| TTACCAAGAGCAATGACTTG+GGG | + | chr6.3:40394626-40394645 | MS.gene060012:intron | 40.0% | |
| TTATACCTCCATGCCATGAA+TGG | - | chr6.3:40393323-40393342 | None:intergenic | 40.0% | |
| TTCCAACCGGATAAGAAAGA+GGG | - | chr6.3:40393118-40393137 | None:intergenic | 40.0% | |
| TTCCGATAAAAAGGGACTGT+GGG | + | chr6.3:40392697-40392716 | MS.gene060012:intron | 40.0% | |
| TTGGAAATGGAATAGGGAAC+TGG | + | chr6.3:40393707-40393726 | MS.gene060012:intron | 40.0% | |
| TTGGATGCAGGAAGAAATTG+TGG | + | chr6.3:40395763-40395782 | MS.gene060012:intron | 40.0% | |
| TTTAGATATGTGCATGCCCT+TGG | + | chr6.3:40395696-40395715 | MS.gene060012:intron | 40.0% | |
| TTTCCAACCGGATAAGAAAG+AGG | - | chr6.3:40393119-40393138 | None:intergenic | 40.0% | |
| ! | AGCACTTGATTTGACCGAAA+AGG | + | chr6.3:40393504-40393523 | MS.gene060012:CDS | 40.0% |
| ! | CTTGGGTTCTCTCTATGTTT+TGG | + | chr6.3:40393832-40393851 | MS.gene060012:intron | 40.0% |
| ! | GGACCTAGTCAAAAGTGTAA+TGG | - | chr6.3:40396662-40396681 | None:intergenic | 40.0% |
| ! | GTTGTTTCCCTCAAACTAGT+AGG | + | chr6.3:40394829-40394848 | MS.gene060012:intron | 40.0% |
| ! | TAACTTGTCGCTCTAATTGC+AGG | + | chr6.3:40393004-40393023 | MS.gene060012:intron | 40.0% |
| ! | TACCTTTTGGATCTGCAACA+TGG | + | chr6.3:40391356-40391375 | MS.gene060012:CDS | 40.0% |
| ! | TCCAGCCTTATATTCCAGAA+AGG | + | chr6.3:40396278-40396297 | MS.gene060012:intron | 40.0% |
| ! | TCGTATAGAGGCATATCAGA+TGG | - | chr6.3:40395318-40395337 | None:intergenic | 40.0% |
| ! | TCTAGTGGGTATTCATATGG+TGG | - | chr6.3:40394403-40394422 | None:intergenic | 40.0% |
| ! | TGGGTATTCATATGGTGGAA+CGG | - | chr6.3:40394398-40394417 | None:intergenic | 40.0% |
| ! | TGTTTTCTTGTTCTCTTCGC+CGG | + | chr6.3:40391400-40391419 | MS.gene060012:CDS | 40.0% |
| !! | AATGCTTCATTTTTGGGCCT+CGG | + | chr6.3:40396075-40396094 | MS.gene060012:intron | 40.0% |
| !! | AGGCCATTACACTTTTGACT+AGG | + | chr6.3:40396656-40396675 | MS.gene060012:intron | 40.0% |
| !! | CTGGGATTTTGAGAATAGAC+AGG | - | chr6.3:40395009-40395028 | None:intergenic | 40.0% |
| !! | GATGCAAAGAAAAGTGTTGG+TGG | + | chr6.3:40395441-40395460 | MS.gene060012:CDS | 40.0% |
| !! | TGCAAAGAAAAGTGTTGGTG+GGG | + | chr6.3:40395443-40395462 | MS.gene060012:CDS | 40.0% |
| !! | TGTTTTTGAACAGACTGCTG+AGG | + | chr6.3:40393954-40393973 | MS.gene060012:intron | 40.0% |
| !! | TTATTCTCTAAGGCCCCATT+TGG | + | chr6.3:40392184-40392203 | MS.gene060012:intron | 40.0% |
| !! | TTGGGCCTAAATGATTTGCT+CGG | - | chr6.3:40394667-40394686 | None:intergenic | 40.0% |
| !!! | AACCTGCTTGTTTTTAAGGC+TGG | + | chr6.3:40393436-40393455 | MS.gene060012:intron | 40.0% |
| !!! | ACCTGCTTGTTTTTAAGGCT+GGG | + | chr6.3:40393437-40393456 | MS.gene060012:intron | 40.0% |
| !!! | AGTTTTGGAATAACACCGCA+TGG | - | chr6.3:40393758-40393777 | None:intergenic | 40.0% |
| !!! | CCAGCTTGTTTTTTCTGAGA+AGG | - | chr6.3:40391502-40391521 | None:intergenic | 40.0% |
| !!! | CTTGTTTTTAAGGCTGGGAA+AGG | + | chr6.3:40393442-40393461 | MS.gene060012:intron | 40.0% |
| !!! | TGTTTTTAAGGCTGGGAAAG+GGG | + | chr6.3:40393444-40393463 | MS.gene060012:intron | 40.0% |
| AAACACACCGTGGTATTCTC+CGG | - | chr6.3:40395212-40395231 | None:intergenic | 45.0% | |
| AAGGACGGAATCACGGATAA+AGG | + | chr6.3:40396732-40396751 | MS.gene060012:CDS | 45.0% | |
| ACATGCCACGATTCTTGGAA+GGG | + | chr6.3:40396757-40396776 | MS.gene060012:CDS | 45.0% | |
| ACGCACAAGCCATGAAAAGT+TGG | - | chr6.3:40393075-40393094 | None:intergenic | 45.0% | |
| ACTAGACTCCGTTCCTTTAC+GGG | - | chr6.3:40396612-40396631 | None:intergenic | 45.0% | |
| ACTGAGAGACATGAGACCAA+GGG | - | chr6.3:40391443-40391462 | None:intergenic | 45.0% | |
| AGTAGATATGGTCTCGCTGT+AGG | + | chr6.3:40393047-40393066 | MS.gene060012:CDS | 45.0% | |
| ATGCCTCACAAGTTCTACCA+TGG | - | chr6.3:40394359-40394378 | None:intergenic | 45.0% | |
| CAACCATGGTAGAACTTGTG+AGG | + | chr6.3:40394432-40394451 | MS.gene060012:intron | 45.0% | |
| CACACAGTCACATGAGAGAA+AGG | + | chr6.3:40396485-40396504 | MS.gene060012:intron | 45.0% | |
| CACTAGACTCCGTTCCTTTA+CGG | - | chr6.3:40396613-40396632 | None:intergenic | 45.0% | |
| CACTTAGAAGGGATAATCCC+CGG | - | chr6.3:40394564-40394583 | None:intergenic | 45.0% | |
| CCAATGGCTGTCAAAGAGTT+AGG | - | chr6.3:40392780-40392799 | None:intergenic | 45.0% | |
| CCTAACTCTTTGACAGCCAT+TGG | + | chr6.3:40392777-40392796 | MS.gene060012:intron | 45.0% | |
| CTACATGATCATTGCGACCA+TGG | + | chr6.3:40394339-40394358 | MS.gene060012:intron | 45.0% | |
| CTATGTCCATTATGGCAGAG+GGG | - | chr6.3:40396457-40396476 | None:intergenic | 45.0% | |
| CTCATGTGACTGTGTGATGT+TGG | - | chr6.3:40396481-40396500 | None:intergenic | 45.0% | |
| CTGGACCGAGCAAATCATTT+AGG | + | chr6.3:40394659-40394678 | MS.gene060012:intron | 45.0% | |
| CTGTCAGTGCAGTATCTATC+CGG | + | chr6.3:40395190-40395209 | MS.gene060012:CDS | 45.0% | |
| GATACTGACCAAGTCTCAAG+AGG | + | chr6.3:40396699-40396718 | MS.gene060012:CDS | 45.0% | |
| GCTATGTCCATTATGGCAGA+GGG | - | chr6.3:40396458-40396477 | None:intergenic | 45.0% | |
| GCTCATGTGAGCACTTAGAA+GGG | - | chr6.3:40394575-40394594 | None:intergenic | 45.0% | |
| GTCAAGCCTTCAAAGCTTAC+TGG | + | chr6.3:40395534-40395553 | MS.gene060012:CDS | 45.0% | |
| GTTCCGATAAAAAGGGACTG+TGG | + | chr6.3:40392696-40392715 | MS.gene060012:intron | 45.0% | |
| GTTGTGAAGACTACCGGAAA+AGG | + | chr6.3:40395381-40395400 | MS.gene060012:CDS | 45.0% | |
| TACATGCCACGATTCTTGGA+AGG | + | chr6.3:40396756-40396775 | MS.gene060012:CDS | 45.0% | |
| TACCCTCTTTCTTATCCGGT+TGG | + | chr6.3:40393113-40393132 | MS.gene060012:CDS | 45.0% | |
| TACCGGGAAAAAAATCTCGG+AGG | + | chr6.3:40396569-40396588 | MS.gene060012:intron | 45.0% | |
| TAGAGGAAGAGCCTGCATAT+TGG | - | chr6.3:40392814-40392833 | None:intergenic | 45.0% | |
| TATGAAACACGGACACTCCT+CGG | + | chr6.3:40391585-40391604 | MS.gene060012:intron | 45.0% | |
| TCCCAGCCTTAAAAACAAGC+AGG | - | chr6.3:40393441-40393460 | None:intergenic | 45.0% | |
| TCCGAATCCATCTCGGATAT+GGG | - | chr6.3:40396637-40396656 | None:intergenic | 45.0% | |
| TCTCTTGTCATGACCCGTAA+AGG | + | chr6.3:40396596-40396615 | MS.gene060012:intron | 45.0% | |
| TCTTGTCTCCATTCATGGCA+TGG | + | chr6.3:40393312-40393331 | MS.gene060012:CDS | 45.0% | |
| TGCTCATGTGAGCACTTAGA+AGG | - | chr6.3:40394576-40394595 | None:intergenic | 45.0% | |
| TGGTCGCAATGATCATGTAG+CGG | - | chr6.3:40394339-40394358 | None:intergenic | 45.0% | |
| TGTCATGACCCGTAAAGGAA+CGG | + | chr6.3:40396601-40396620 | MS.gene060012:intron | 45.0% | |
| TTGGACAAGCAATGCCTTTC+TGG | - | chr6.3:40396295-40396314 | None:intergenic | 45.0% | |
| ! | ACCCATATCCGAGATGGATT+CGG | + | chr6.3:40396633-40396652 | MS.gene060012:intron | 45.0% |
| ! | ATCTCAAATCAGGGAGGCAT+TGG | + | chr6.3:40394951-40394970 | MS.gene060012:intron | 45.0% |
| ! | ATGCCTCCCTGATTTGAGAT+AGG | - | chr6.3:40394951-40394970 | None:intergenic | 45.0% |
| ! | CGGAGTTTCTTTGCCTTTTC+CGG | - | chr6.3:40395397-40395416 | None:intergenic | 45.0% |
| ! | CTCCCACAGTCCCTTTTTAT+CGG | - | chr6.3:40392702-40392721 | None:intergenic | 45.0% |
| ! | CTGTAGGTGCCAACTTTTCA+TGG | + | chr6.3:40393063-40393082 | MS.gene060012:CDS | 45.0% |
| ! | GATAGATACTGCACTGACAG+GGG | - | chr6.3:40395190-40395209 | None:intergenic | 45.0% |
| ! | GGATAGATACTGCACTGACA+GGG | - | chr6.3:40395191-40395210 | None:intergenic | 45.0% |
| ! | GGTGGATCCTACTAGTTTGA+GGG | - | chr6.3:40394839-40394858 | None:intergenic | 45.0% |
| ! | TACCAAGAGCAATGACTTGG+GGG | + | chr6.3:40394627-40394646 | MS.gene060012:intron | 45.0% |
| ! | TCAGTCGACTTTCGGATTGA+TGG | - | chr6.3:40395956-40395975 | None:intergenic | 45.0% |
| ! | TCCAAAAGGTATGCCTTCGT+TGG | - | chr6.3:40391347-40391366 | None:intergenic | 45.0% |
| ! | TGGAAGTGAACGGTGAGTTT+TGG | - | chr6.3:40393773-40393792 | None:intergenic | 45.0% |
| ! | TTTTGAACAGACTGCTGAGG+AGG | + | chr6.3:40393957-40393976 | MS.gene060012:intron | 45.0% |
| !! | ACCAACGAAGGCATACCTTT+TGG | + | chr6.3:40391343-40391362 | MS.gene060012:CDS | 45.0% |
| !! | AGGAACGGTGTTGTTCACAA+AGG | - | chr6.3:40394225-40394244 | None:intergenic | 45.0% |
| !! | ATGCTTCATTTTTGGGCCTC+GGG | + | chr6.3:40396076-40396095 | MS.gene060012:intron | 45.0% |
| !! | CATTATGGCAGAGGGGTATT+GGG | - | chr6.3:40396450-40396469 | None:intergenic | 45.0% |
| !! | CTGGGAAGCATCAATGATGT+TGG | + | chr6.3:40393688-40393707 | MS.gene060012:intron | 45.0% |
| !! | GCCTTTCTGGAATATAAGGC+TGG | - | chr6.3:40396282-40396301 | None:intergenic | 45.0% |
| !! | GGAACGACGAGGCTTTATTT+AGG | + | chr6.3:40393272-40393291 | MS.gene060012:CDS | 45.0% |
| !! | TCTCAAATCAGGGAGGCATT+GGG | + | chr6.3:40394952-40394971 | MS.gene060012:intron | 45.0% |
| !!! | CTCCTCCGAGATTTTTTTCC+CGG | - | chr6.3:40396574-40396593 | None:intergenic | 45.0% |
| !!! | GTTTTTAAGGCTGGGAAAGG+GGG | + | chr6.3:40393445-40393464 | MS.gene060012:intron | 45.0% |
| !!! | TTTTCTTTTTATAAATAATT+AGG | + | chr6.3:40395128-40395147 | MS.gene060012:intron | 5.0% |
| AATGGCCTCCGAATCCATCT+CGG | - | chr6.3:40396644-40396663 | None:intergenic | 50.0% | |
| AGGCTACATGCCACGATTCT+TGG | + | chr6.3:40396752-40396771 | MS.gene060012:CDS | 50.0% | |
| AGTTGCAGCTGCTTCCTCAA+TGG | + | chr6.3:40395922-40395941 | MS.gene060012:CDS | 50.0% | |
| ATAGCCAGAGCTTGATGCCA+TGG | - | chr6.3:40393174-40393193 | None:intergenic | 50.0% | |
| ATGCCTCACAAGTTCTGCCA+TGG | - | chr6.3:40394280-40394299 | None:intergenic | 50.0% | |
| CAAGTCTCAAGAGGGTAAGC+GGG | + | chr6.3:40396708-40396727 | MS.gene060012:CDS | 50.0% | |
| CACGAAAAGTTCAAGACCCG+AGG | - | chr6.3:40396095-40396114 | None:intergenic | 50.0% | |
| CCAAGTCTCAAGAGGGTAAG+CGG | + | chr6.3:40396707-40396726 | MS.gene060012:CDS | 50.0% | |
| CCAATACCCCTCTGCCATAA+TGG | + | chr6.3:40396448-40396467 | MS.gene060012:intron | 50.0% | |
| CCACATAGTCGTAGCTACCA+TGG | + | chr6.3:40394260-40394279 | MS.gene060012:intron | 50.0% | |
| CCACTCAATCAGCTCGATCA+TGG | + | chr6.3:40394181-40394200 | MS.gene060012:intron | 50.0% | |
| CCATGATCGAGCTGATTGAG+TGG | - | chr6.3:40394184-40394203 | None:intergenic | 50.0% | |
| CCATGGTAGCTACGACTATG+TGG | - | chr6.3:40394263-40394282 | None:intergenic | 50.0% | |
| CGACCATGGTAGAACTTGTG+AGG | + | chr6.3:40394353-40394372 | MS.gene060012:intron | 50.0% | |
| CGAGCATACTTGCGATGGAA+CGG | - | chr6.3:40394161-40394180 | None:intergenic | 50.0% | |
| CGGGAAAAAAATCTCGGAGG+AGG | + | chr6.3:40396572-40396591 | MS.gene060012:intron | 50.0% | |
| CGGGCATACCTGTGATAGAA+CGG | - | chr6.3:40394319-40394338 | None:intergenic | 50.0% | |
| CGGGCATATCTGAGAAGGAA+CGG | - | chr6.3:40394240-40394259 | None:intergenic | 50.0% | |
| CTACCATGGCAGAACTTGTG+AGG | + | chr6.3:40394274-40394293 | MS.gene060012:intron | 50.0% | |
| CTAGTGACCCATATCCGAGA+TGG | + | chr6.3:40396627-40396646 | MS.gene060012:intron | 50.0% | |
| CTCCGAATCCATCTCGGATA+TGG | - | chr6.3:40396638-40396657 | None:intergenic | 50.0% | |
| CTGCCTATCTCAAATCAGGG+AGG | + | chr6.3:40394945-40394964 | MS.gene060012:intron | 50.0% | |
| GACTGAGAGACATGAGACCA+AGG | - | chr6.3:40391444-40391463 | None:intergenic | 50.0% | |
| GAGGAACATGTTCGTACCAG+TGG | - | chr6.3:40394518-40394537 | None:intergenic | 50.0% | |
| GCTGCTGTTGTGAAGACTAC+CGG | + | chr6.3:40395375-40395394 | MS.gene060012:CDS | 50.0% | |
| GGCATACCTGTGATAGAACG+GGG | - | chr6.3:40394317-40394336 | None:intergenic | 50.0% | |
| GGCTATGTCCATTATGGCAG+AGG | - | chr6.3:40396459-40396478 | None:intergenic | 50.0% | |
| GGGCATACCTGTGATAGAAC+GGG | - | chr6.3:40394318-40394337 | None:intergenic | 50.0% | |
| GGTCGCAATGATCATGTAGC+GGG | - | chr6.3:40394338-40394357 | None:intergenic | 50.0% | |
| GTCTTCTATTTGGGCACGCT+GGG | + | chr6.3:40393670-40393689 | MS.gene060012:intron | 50.0% | |
| TAGAACGGGGCAGTTCACAA+AGG | - | chr6.3:40394304-40394323 | None:intergenic | 50.0% | |
| TGAGACGGTACAGGTGACAA+GGG | - | chr6.3:40394462-40394481 | None:intergenic | 50.0% | |
| TGAGCATGTTCGCAGTGAGA+CGG | - | chr6.3:40394477-40394496 | None:intergenic | 50.0% | |
| TGGAACGGAGCTGTTCACAA+AGG | - | chr6.3:40394146-40394165 | None:intergenic | 50.0% | |
| TGGCTGTCAAAGAGTTAGGC+AGG | - | chr6.3:40392776-40392795 | None:intergenic | 50.0% | |
| TGGGAAAGATTCTTGCCCGT+GGG | + | chr6.3:40394971-40394990 | MS.gene060012:CDS | 50.0% | |
| TGGTAGCTACGACTATGTGG+CGG | - | chr6.3:40394260-40394279 | None:intergenic | 50.0% | |
| TGTCTCCATTCATGGCATGG+AGG | + | chr6.3:40393315-40393334 | MS.gene060012:CDS | 50.0% | |
| TGTCTTCTATTTGGGCACGC+TGG | + | chr6.3:40393669-40393688 | MS.gene060012:intron | 50.0% | |
| TGTTCCATGGCATCAAGCTC+TGG | + | chr6.3:40393167-40393186 | MS.gene060012:intron | 50.0% | |
| TTGGGAAAGATTCTTGCCCG+TGG | + | chr6.3:40394970-40394989 | MS.gene060012:CDS | 50.0% | |
| ! | ACCAAGAGCAATGACTTGGG+GGG | + | chr6.3:40394628-40394647 | MS.gene060012:intron | 50.0% |
| ! | ATTTACTGTGTCGGCGTGTC+CGG | + | chr6.3:40391840-40391859 | MS.gene060012:intron | 50.0% |
| ! | CATATCCGAGATGGATTCGG+AGG | + | chr6.3:40396636-40396655 | MS.gene060012:intron | 50.0% |
| ! | CCATTATGGCAGAGGGGTAT+TGG | - | chr6.3:40396451-40396470 | None:intergenic | 50.0% |
| ! | CGGATAGATACTGCACTGAC+AGG | - | chr6.3:40395192-40395211 | None:intergenic | 50.0% |
| ! | CTCCCTGATTTGAGATAGGC+AGG | - | chr6.3:40394947-40394966 | None:intergenic | 50.0% |
| ! | GCAACATGGATTGCTTACGC+CGG | + | chr6.3:40391370-40391389 | MS.gene060012:CDS | 50.0% |
| ! | GGGTGGATCCTACTAGTTTG+AGG | - | chr6.3:40394840-40394859 | None:intergenic | 50.0% |
| !! | ACTTTTGACTAGGTCCCCAC+AGG | + | chr6.3:40396666-40396685 | MS.gene060012:intron | 50.0% |
| !! | AGGTTCTGGATTGCGTACTG+GGG | + | chr6.3:40393251-40393270 | MS.gene060012:intron | 50.0% |
| !! | CAGGTTCTGGATTGCGTACT+GGG | + | chr6.3:40393250-40393269 | MS.gene060012:intron | 50.0% |
| !! | GGTGACAGCTTAAGTTGGGA+CGG | + | chr6.3:40396506-40396525 | MS.gene060012:intron | 50.0% |
| !! | TCAGGTTCTGGATTGCGTAC+TGG | + | chr6.3:40393249-40393268 | MS.gene060012:intron | 50.0% |
| !! | TGAAGCACTGATACGGACAC+CGG | - | chr6.3:40391862-40391881 | None:intergenic | 50.0% |
| !! | TGGAACGGTGCTGTTCACAA+GGG | - | chr6.3:40394383-40394402 | None:intergenic | 50.0% |
| ACACGGACACTCCTCGGATT+AGG | + | chr6.3:40391591-40391610 | MS.gene060012:intron | 55.0% | |
| AGAGGGTAAGCGGGAAAGGA+CGG | + | chr6.3:40396717-40396736 | MS.gene060012:CDS | 55.0% | |
| AGCGGGAAAGGACGGAATCA+CGG | + | chr6.3:40396725-40396744 | MS.gene060012:CDS | 55.0% | |
| AGCGGGACACGTCTAATTCG+AGG | - | chr6.3:40391736-40391755 | None:intergenic | 55.0% | |
| AGTGGCGAGCATACTTGCGA+TGG | - | chr6.3:40394166-40394185 | None:intergenic | 55.0% | |
| CACCTTGCTCTCACCAACGA+AGG | + | chr6.3:40391331-40391350 | MS.gene060012:CDS | 55.0% | |
| CATGAGACCAAGGGTGAGAC+CGG | - | chr6.3:40391434-40391453 | None:intergenic | 55.0% | |
| CCGCTTACCCTCTTGAGACT+TGG | - | chr6.3:40396710-40396729 | None:intergenic | 55.0% | |
| CTATCACAGGCACTCACCAC+TGG | + | chr6.3:40394499-40394518 | MS.gene060012:intron | 55.0% | |
| CTCAAGAGGGTAAGCGGGAA+AGG | + | chr6.3:40396713-40396732 | MS.gene060012:CDS | 55.0% | |
| CTGACAGGGGTCTCTGATTC+AGG | - | chr6.3:40395177-40395196 | None:intergenic | 55.0% | |
| GAACTGCCCCGTTCTATCAC+AGG | + | chr6.3:40394308-40394327 | MS.gene060012:intron | 55.0% | |
| GGTAGCTACGACTATGTGGC+GGG | - | chr6.3:40394259-40394278 | None:intergenic | 55.0% | |
| GTGAGACGGTACAGGTGACA+AGG | - | chr6.3:40394463-40394482 | None:intergenic | 55.0% | |
| GTGATGACTTTGTAGGGGCG+AGG | - | chr6.3:40394603-40394622 | None:intergenic | 55.0% | |
| TGCAGCGATCATTCTTCCCG+TGG | + | chr6.3:40391896-40391915 | MS.gene060012:intron | 55.0% | |
| TGCCACGATTCTTGGAAGGG+CGG | + | chr6.3:40396760-40396779 | MS.gene060012:CDS | 55.0% | |
| TGTTCGCAGTGAGACGGTAC+AGG | - | chr6.3:40394471-40394490 | None:intergenic | 55.0% | |
| TTCCGCCCTTCCAAGAATCG+TGG | - | chr6.3:40396765-40396784 | None:intergenic | 55.0% | |
| ! | CTTCGTTGGTGAGAGCAAGG+TGG | - | chr6.3:40391333-40391352 | None:intergenic | 55.0% |
| ! | TGATGGAGCTCGTGCCATTG+AGG | - | chr6.3:40395939-40395958 | None:intergenic | 55.0% |
| ! | TGCCTTCGTTGGTGAGAGCA+AGG | - | chr6.3:40391336-40391355 | None:intergenic | 55.0% |
| !! | GCGTGTCCTGGTGTTGTACA+CGG | + | chr6.3:40391613-40391632 | MS.gene060012:intron | 55.0% |
| !! | GTGGAACGGTGCTGTTCACA+AGG | - | chr6.3:40394384-40394403 | None:intergenic | 55.0% |
| !! | TGTGGCGGGCATATCTGAGA+AGG | - | chr6.3:40394245-40394264 | None:intergenic | 55.0% |
| ACCAGGACACGCCTAATCCG+AGG | - | chr6.3:40391605-40391624 | None:intergenic | 60.0% | |
| CGTGGGCGAGATAGGCATAC+CGG | + | chr6.3:40396552-40396571 | MS.gene060012:intron | 60.0% | |
| CTCTTCGCCGGAGTCATGTC+CGG | + | chr6.3:40391412-40391431 | MS.gene060012:CDS | 60.0% | |
| GACTTGGGGGGCTACTGTTC+TGG | + | chr6.3:40394640-40394659 | MS.gene060012:intron | 60.0% | |
| GCCCCCCAAGTCATTGCTCT+TGG | - | chr6.3:40394632-40394651 | None:intergenic | 60.0% | |
| GGTGAGACCGGACATGACTC+CGG | - | chr6.3:40391422-40391441 | None:intergenic | 60.0% | |
| GTCATGTCCGGTCTCACCCT+TGG | + | chr6.3:40391424-40391443 | MS.gene060012:CDS | 60.0% | |
| GTCGGACCGTGTACAACACC+AGG | - | chr6.3:40391622-40391641 | None:intergenic | 60.0% | |
| GTGGGCGAGATAGGCATACC+GGG | + | chr6.3:40396553-40396572 | MS.gene060012:intron | 60.0% | |
| TTGCGTACTGGGGAACGACG+AGG | + | chr6.3:40393261-40393280 | MS.gene060012:CDS | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+TGG | + | chr6.3:40391601-40391620 | MS.gene060012:intron | 60.0% |
| AGGAACTCGGCTGTGCCCAC+GGG | - | chr6.3:40394989-40395008 | None:intergenic | 65.0% | |
| CAGGAACTCGGCTGTGCCCA+CGG | - | chr6.3:40394990-40395009 | None:intergenic | 65.0% | |
| GACGTGTCCCGCTGTCGTGT+CGG | + | chr6.3:40391743-40391762 | MS.gene060012:intron | 65.0% | |
| GTCCGACACCGACACGACAG+CGG | - | chr6.3:40391754-40391773 | None:intergenic | 65.0% | |
| TCCGACACCGACACGACAGC+GGG | - | chr6.3:40391753-40391772 | None:intergenic | 65.0% | |
| TGACCACGTGCTCAGCGCGT+GGG | + | chr6.3:40396535-40396554 | MS.gene060012:intron | 65.0% | |
| TTGACCACGTGCTCAGCGCG+TGG | + | chr6.3:40396534-40396553 | MS.gene060012:intron | 65.0% | |
| ! | TCCCGCTGTCGTGTCGGTGT+CGG | + | chr6.3:40391749-40391768 | MS.gene060012:intron | 65.0% |
| GCTCAGCGCGTGGGCGAGAT+AGG | + | chr6.3:40396544-40396563 | MS.gene060012:intron | 70.0% | |
| TCGCCCACGCGCTGAGCACG+TGG | - | chr6.3:40396541-40396560 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 40391286 | 40396795 | 40391286 | ID=MS.gene060012 |
| chr6.3 | mRNA | 40391286 | 40396795 | 40391286 | ID=MS.gene060012.t1;Parent=MS.gene060012 |
| chr6.3 | exon | 40391286 | 40391520 | 40391286 | ID=MS.gene060012.t1.exon1;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40391286 | 40391520 | 40391286 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40391901 | 40391977 | 40391901 | ID=MS.gene060012.t1.exon2;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40391901 | 40391977 | 40391901 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40392822 | 40392905 | 40392822 | ID=MS.gene060012.t1.exon3;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40392822 | 40392905 | 40392822 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40393026 | 40393139 | 40393026 | ID=MS.gene060012.t1.exon4;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40393026 | 40393139 | 40393026 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40393253 | 40393336 | 40393253 | ID=MS.gene060012.t1.exon5;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40393253 | 40393336 | 40393253 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40393454 | 40393525 | 40393454 | ID=MS.gene060012.t1.exon6;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40393454 | 40393525 | 40393454 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40393967 | 40394034 | 40393967 | ID=MS.gene060012.t1.exon7;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40393967 | 40394034 | 40393967 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40394963 | 40395050 | 40394963 | ID=MS.gene060012.t1.exon8;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40394963 | 40395050 | 40394963 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40395150 | 40395223 | 40395150 | ID=MS.gene060012.t1.exon9;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40395150 | 40395223 | 40395150 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40395311 | 40395680 | 40395311 | ID=MS.gene060012.t1.exon10;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40395311 | 40395680 | 40395311 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40395773 | 40395819 | 40395773 | ID=MS.gene060012.t1.exon11;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40395773 | 40395819 | 40395773 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40395907 | 40395988 | 40395907 | ID=MS.gene060012.t1.exon12;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40395907 | 40395988 | 40395907 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| chr6.3 | exon | 40396688 | 40396795 | 40396688 | ID=MS.gene060012.t1.exon13;Parent=MS.gene060012.t1 |
| chr6.3 | CDS | 40396688 | 40396795 | 40396688 | ID=cds.MS.gene060012.t1;Parent=MS.gene060012.t1 |
| Gene Sequence |
| Protein sequence |
