Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51596.t1 | AES80205.1 | 89 | 127 | 14 | 0 | 1 | 127 | 39 | 165 | 7.90E-53 | 216.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51596.t1 | A0A3Q7JC00 | 51.1 | 135 | 55 | 4 | 2 | 127 | 498 | 630 | 5.2e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51596.t1 | G7L4Q7 | 89.0 | 127 | 14 | 0 | 1 | 127 | 39 | 165 | 5.7e-53 | 216.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene51596 | 0.83176 | 1.39E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene51596 | 0.801744 | 7.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51596.t1 | MTR_7g077950 | 88.281 | 128 | 15 | 0 | 1 | 128 | 39 | 166 | 5.36e-80 | 234 |
| MS.gene51596.t1 | MTR_5g054680 | 61.832 | 131 | 42 | 4 | 2 | 127 | 518 | 645 | 3.40e-40 | 142 |
| MS.gene51596.t1 | MTR_1g013000 | 56.911 | 123 | 46 | 3 | 2 | 119 | 355 | 475 | 4.66e-35 | 127 |
| MS.gene51596.t1 | MTR_5g054690 | 51.515 | 99 | 48 | 0 | 29 | 127 | 135 | 233 | 1.73e-25 | 98.6 |
| MS.gene51596.t1 | MTR_5g054690 | 54.217 | 83 | 37 | 1 | 39 | 121 | 29 | 110 | 3.36e-21 | 87.4 |
| MS.gene51596.t1 | MTR_5g054690 | 51.515 | 99 | 48 | 0 | 29 | 127 | 124 | 222 | 2.02e-25 | 98.6 |
| MS.gene51596.t1 | MTR_5g054690 | 51.515 | 99 | 48 | 0 | 29 | 127 | 164 | 262 | 2.39e-25 | 99.0 |
| MS.gene51596.t1 | MTR_5g054690 | 54.878 | 82 | 36 | 1 | 39 | 120 | 29 | 109 | 8.12e-21 | 86.7 |
| MS.gene51596.t1 | MTR_5g054690 | 51.515 | 99 | 48 | 0 | 29 | 127 | 153 | 251 | 2.52e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51596.t1 | AT1G25540 | 51.304 | 115 | 51 | 3 | 13 | 127 | 429 | 538 | 8.01e-23 | 93.2 |
| MS.gene51596.t1 | AT1G25540 | 51.304 | 115 | 51 | 3 | 13 | 127 | 538 | 647 | 1.23e-22 | 92.8 |
Find 26 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCTCAATTTCATTATTT+AGG | 0.105457 | 7.2:-28042375 | None:intergenic |
| CACCTCAATTTCATTATTTA+GGG | 0.224028 | 7.2:-28042374 | None:intergenic |
| TTATTTAGGGGAAGAATATC+AGG | 0.291513 | 7.2:-28042361 | None:intergenic |
| TTAGGAACATACTTCGAGTT+TGG | 0.386405 | 7.2:-28040806 | None:intergenic |
| TAATACAACTTACGTCTTAG+AGG | 0.386407 | 7.2:-28041036 | None:intergenic |
| ATTTCAGACTTGCAGCAAAC+TGG | 0.409253 | 7.2:+28041944 | MS.gene51596:intron |
| AATCAAAGTATACAAGGTTC+TGG | 0.432495 | 7.2:+28039454 | MS.gene51596:CDS |
| TCCCCTAAATAATGAAATTG+AGG | 0.440621 | 7.2:+28042372 | MS.gene51596:CDS |
| TCACCTGAAGGAAAAGAAAC+TGG | 0.448899 | 7.2:+28042254 | MS.gene51596:CDS |
| AATAGTTCGGCTTATATCTC+AGG | 0.451231 | 7.2:+28041981 | MS.gene51596:CDS |
| GCAAATGGTTCAATGACAAC+AGG | 0.475054 | 7.2:+28039348 | None:intergenic |
| CTTCTGATATGCAAATAGTT+CGG | 0.480930 | 7.2:+28041968 | MS.gene51596:CDS |
| CTGCACAATCAAAGTATACA+AGG | 0.521322 | 7.2:+28039448 | MS.gene51596:CDS |
| GACTAGGCAACATGTAAGAA+AGG | 0.521743 | 7.2:+28042185 | MS.gene51596:intron |
| TCTGATTCTACTTCTTGCTG+AGG | 0.539589 | 7.2:-28039375 | None:intergenic |
| CTTAGAGGCAGAAGAACTCC+TGG | 0.554984 | 7.2:-28041021 | None:intergenic |
| AGGTGACTATGAGAACGACT+TGG | 0.565654 | 7.2:-28042237 | None:intergenic |
| AGGGAAGCTTAACAGAACTA+AGG | 0.572407 | 7.2:+28040761 | MS.gene51596:intron |
| GGTGACTATGAGAACGACTT+GGG | 0.581389 | 7.2:-28042236 | None:intergenic |
| GCAGCTGCATCATTCTCAAG+CGG | 0.604141 | 7.2:-28039405 | None:intergenic |
| CGAACTATTTGCATATCAGA+AGG | 0.611737 | 7.2:-28041967 | None:intergenic |
| AAAGTATACAAGGTTCTGGA+AGG | 0.612057 | 7.2:+28039458 | MS.gene51596:CDS |
| TATTTAGGGGAAGAATATCA+GGG | 0.615988 | 7.2:-28042360 | None:intergenic |
| TCGTTCTCATAGTCACCTGA+AGG | 0.628223 | 7.2:+28042242 | MS.gene51596:CDS |
| AGCTTAACAGAACTAAGGCA+AGG | 0.649152 | 7.2:+28040766 | MS.gene51596:CDS |
| ACCTCAATTTCATTATTTAG+GGG | 0.695894 | 7.2:-28042373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr7.2:28039828-28039847 | MS.gene51596:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.2:28039829-28039848 | MS.gene51596:intron | 0.0% |
| !!! | TATTATTTTTTTATATATAA+AGG | - | chr7.2:28041305-28041324 | None:intergenic | 0.0% |
| !! | AAATAAATAAAAGAAGTAAA+GGG | - | chr7.2:28040081-28040100 | None:intergenic | 10.0% |
| !! | AATTATCAATAAAAGTTAAT+CGG | - | chr7.2:28041264-28041283 | None:intergenic | 10.0% |
| !! | ATATATTACAAATTGAATTA+AGG | - | chr7.2:28042090-28042109 | None:intergenic | 10.0% |
| !! | CCTATATATATATATATATA+GGG | + | chr7.2:28040485-28040504 | MS.gene51596:intron | 10.0% |
| !! | CCTATATATATATATATATA+GGG | - | chr7.2:28040504-28040485 | None:intergenic | 10.0% |
| !! | CTATATATATATATATATAG+GGG | - | chr7.2:28040505-28040486 | None:intergenic | 10.0% |
| !! | TATATATATATATATATAGG+GGG | + | chr7.2:28039853-28039872 | MS.gene51596:intron | 10.0% |
| !! | TATATATATATATATATAGG+GGG | - | chr7.2:28039872-28039853 | None:intergenic | 10.0% |
| !!! | ATTCTTTTCAATATAAATAT+AGG | + | chr7.2:28039778-28039797 | MS.gene51596:intron | 10.0% |
| !! | AAGAGAGAAAAAAATAATTA+AGG | - | chr7.2:28042032-28042051 | None:intergenic | 15.0% |
| !! | ATTTATATTGAAAAGAATCT+AGG | - | chr7.2:28039776-28039795 | None:intergenic | 15.0% |
| !! | CCCTATATATATATATATAT+AGG | + | chr7.2:28040484-28040503 | MS.gene51596:intron | 15.0% |
| !! | CCCTATATATATATATATAT+AGG | - | chr7.2:28040503-28040484 | None:intergenic | 15.0% |
| !! | GAAATAAATAAAAGAAGTAA+AGG | - | chr7.2:28040082-28040101 | None:intergenic | 15.0% |
| !! | TATTATTTATTAGTACCATT+TGG | + | chr7.2:28041117-28041136 | MS.gene51596:intron | 15.0% |
| !! | TTTATATTGAAAAGAATCTA+GGG | - | chr7.2:28039775-28039794 | None:intergenic | 15.0% |
| !!! | AATCCTAATGTATAATTTTT+CGG | + | chr7.2:28040988-28041007 | MS.gene51596:intron | 15.0% |
| !!! | GTAAGTTAATATTTTTATCT+CGG | - | chr7.2:28041665-28041684 | None:intergenic | 15.0% |
| !! | AAAGTAGTATTTCCTTAAAA+TGG | + | chr7.2:28041209-28041228 | MS.gene51596:intron | 20.0% |
| !! | AACAAAACTATAATGTACAT+AGG | - | chr7.2:28040913-28040932 | None:intergenic | 20.0% |
| !! | AATAGGAAATTCATTATTTC+AGG | - | chr7.2:28041556-28041575 | None:intergenic | 20.0% |
| !! | ATAAGTTATATGAGAATGAT+AGG | - | chr7.2:28040444-28040463 | None:intergenic | 20.0% |
| !! | ATATATATATATATAGGGAG+CGG | + | chr7.2:28040490-28040509 | MS.gene51596:intron | 20.0% |
| !!! | TACACAATTTTCTTGTAAAT+TGG | + | chr7.2:28039538-28039557 | MS.gene51596:intron | 20.0% |
| !!! | TTCTCTCTTTTAATTATATG+AGG | + | chr7.2:28042043-28042062 | MS.gene51596:intron | 20.0% |
| !!! | TTTTATGATAAAGATGAGAA+GGG | - | chr7.2:28040104-28040123 | None:intergenic | 20.0% |
| ! | AAATTAGTATCACGTATGTT+AGG | - | chr7.2:28041923-28041942 | None:intergenic | 25.0% |
| ! | AACCTTTGGATTAAAATGAA+TGG | - | chr7.2:28040411-28040430 | None:intergenic | 25.0% |
| ! | AATATTAACTTACCTGTGAA+TGG | + | chr7.2:28041672-28041691 | MS.gene51596:intron | 25.0% |
| ! | AATGAATGGTTAGGATTAAA+AGG | - | chr7.2:28040397-28040416 | None:intergenic | 25.0% |
| ! | AATTTCTGAATCAATTGAAG+TGG | - | chr7.2:28040157-28040176 | None:intergenic | 25.0% |
| ! | ACACCTCAATTTCATTATTT+AGG | - | chr7.2:28042378-28042397 | None:intergenic | 25.0% |
| ! | ACATCTACAGAAAAAATTCT+AGG | - | chr7.2:28042147-28042166 | None:intergenic | 25.0% |
| ! | ACCTCAATTTCATTATTTAG+GGG | - | chr7.2:28042376-28042395 | None:intergenic | 25.0% |
| ! | AGTATTTCCTTAAAATGGTT+TGG | + | chr7.2:28041214-28041233 | MS.gene51596:intron | 25.0% |
| ! | ATAAGTTATGTGAGAATGAT+AGG | + | chr7.2:28039894-28039913 | MS.gene51596:intron | 25.0% |
| ! | CACCTCAATTTCATTATTTA+GGG | - | chr7.2:28042377-28042396 | None:intergenic | 25.0% |
| ! | TAGGAATAATTATCAACCTT+TGG | - | chr7.2:28040425-28040444 | None:intergenic | 25.0% |
| ! | TAGTGTCAAACAAAATGAAT+TGG | - | chr7.2:28039584-28039603 | None:intergenic | 25.0% |
| ! | TCATAAAACTCTCTCAAATT+TGG | + | chr7.2:28040116-28040135 | MS.gene51596:intron | 25.0% |
| ! | TCTGGTTAGAAAAAAAAAAC+AGG | + | chr7.2:28041631-28041650 | MS.gene51596:intron | 25.0% |
| ! | TGAGAGATAAAGTTGAATTA+GGG | - | chr7.2:28039509-28039528 | None:intergenic | 25.0% |
| ! | TTGGATTAAAATGAATGGTT+AGG | - | chr7.2:28040406-28040425 | None:intergenic | 25.0% |
| !! | AAACAAACCAAACCATTTTA+AGG | - | chr7.2:28041224-28041243 | None:intergenic | 25.0% |
| !! | ACTTTTATCTTATAACCAAG+CGG | + | chr7.2:28039667-28039686 | MS.gene51596:intron | 25.0% |
| !! | AGACTAATAACCTTTGTTAT+TGG | - | chr7.2:28040567-28040586 | None:intergenic | 25.0% |
| !! | GTTTTATGATAAAGATGAGA+AGG | - | chr7.2:28040105-28040124 | None:intergenic | 25.0% |
| !! | TAATTTTGTATGTTGTGACT+AGG | + | chr7.2:28042169-28042188 | MS.gene51596:intron | 25.0% |
| !! | TATGTATTTTTCTTGCAGTT+AGG | - | chr7.2:28040827-28040846 | None:intergenic | 25.0% |
| !!! | AACCATTCATTTTAATCCAA+AGG | + | chr7.2:28040406-28040425 | MS.gene51596:intron | 25.0% |
| !!! | ACTAATCATTTTTGCACAAT+AGG | - | chr7.2:28041573-28041592 | None:intergenic | 25.0% |
| !!! | TCATTTTGTTTGACACTAAT+AGG | + | chr7.2:28039586-28039605 | MS.gene51596:intron | 25.0% |
| !!! | TTAAAATGGTTTGGTTTGTT+TGG | + | chr7.2:28041223-28041242 | MS.gene51596:intron | 25.0% |
| AATCAAAGTATACAAGGTTC+TGG | + | chr7.2:28039454-28039473 | MS.gene51596:CDS | 30.0% | |
| ACTTACATGCGTATATGATT+TGG | - | chr7.2:28041900-28041919 | None:intergenic | 30.0% | |
| AGAAAACAGAGATGTTACAT+GGG | + | chr7.2:28040290-28040309 | MS.gene51596:intron | 30.0% | |
| AGAGCAAAGAATTTATGATG+TGG | + | chr7.2:28041169-28041188 | MS.gene51596:intron | 30.0% | |
| AGTTGAATTAGGGTTTAAGA+AGG | - | chr7.2:28039499-28039518 | None:intergenic | 30.0% | |
| ATGTTAGAAACGAAGAAGAA+AGG | - | chr7.2:28040041-28040060 | None:intergenic | 30.0% | |
| ATTTGAACAATCAATTCAGC+TGG | + | chr7.2:28041740-28041759 | MS.gene51596:intron | 30.0% | |
| CAGGCTTAAGTTTAATCAAA+TGG | - | chr7.2:28041537-28041556 | None:intergenic | 30.0% | |
| CCACCGAAAAATTATACATT+AGG | - | chr7.2:28040994-28041013 | None:intergenic | 30.0% | |
| CCTGAATGGTTAAGATTAAA+AGG | + | chr7.2:28039929-28039948 | MS.gene51596:intron | 30.0% | |
| CTTCTGATATGCAAATAGTT+CGG | + | chr7.2:28041968-28041987 | MS.gene51596:CDS | 30.0% | |
| GAAATCATTGCCAATAACAA+AGG | + | chr7.2:28040554-28040573 | MS.gene51596:intron | 30.0% | |
| GGAATAATTATCAACCTGAA+TGG | + | chr7.2:28039915-28039934 | MS.gene51596:intron | 30.0% | |
| GTAATTGTCAAAGAATGAAC+CGG | + | chr7.2:28040657-28040676 | MS.gene51596:intron | 30.0% | |
| GTACATAGGAAAATGATAGT+AGG | - | chr7.2:28040899-28040918 | None:intergenic | 30.0% | |
| GTGAGAGATAAAGTTGAATT+AGG | - | chr7.2:28039510-28039529 | None:intergenic | 30.0% | |
| GTGGGTTTAAATTAGAAACT+CGG | - | chr7.2:28042290-28042309 | None:intergenic | 30.0% | |
| TAAAGGGTGAAGAATTAGAA+AGG | - | chr7.2:28040065-28040084 | None:intergenic | 30.0% | |
| TAATACAACTTACGTCTTAG+AGG | - | chr7.2:28041039-28041058 | None:intergenic | 30.0% | |
| TAATTGAAGCTATAGCTTAG+CGG | + | chr7.2:28041342-28041361 | MS.gene51596:intron | 30.0% | |
| TAGAAAACAGAGATGTTACA+TGG | + | chr7.2:28040289-28040308 | MS.gene51596:intron | 30.0% | |
| TAGTACAACATATTTGTGTC+TGG | + | chr7.2:28041613-28041632 | MS.gene51596:intron | 30.0% | |
| TATTTAGGGGAAGAATATCA+GGG | - | chr7.2:28042363-28042382 | None:intergenic | 30.0% | |
| TCCCCTAAATAATGAAATTG+AGG | + | chr7.2:28042372-28042391 | MS.gene51596:CDS | 30.0% | |
| TGTTAGAAACGAAGAAGAAA+GGG | - | chr7.2:28040040-28040059 | None:intergenic | 30.0% | |
| TTACTATTACTTCCATTCAC+AGG | - | chr7.2:28041687-28041706 | None:intergenic | 30.0% | |
| TTATTTAGGGGAAGAATATC+AGG | - | chr7.2:28042364-28042383 | None:intergenic | 30.0% | |
| TTGTACTAAATAGCATATCG+CGG | - | chr7.2:28041391-28041410 | None:intergenic | 30.0% | |
| ! | AAGTCTAGAACTTGAATCAA+TGG | - | chr7.2:28040264-28040283 | None:intergenic | 30.0% |
| ! | ACACAGTCTTTAAGAGAAAA+AGG | - | chr7.2:28040183-28040202 | None:intergenic | 30.0% |
| ! | CCTTTTAATCTTAACCATTC+AGG | - | chr7.2:28039932-28039951 | None:intergenic | 30.0% |
| ! | GTATTCTTTTGGCAAAAATG+TGG | + | chr7.2:28039689-28039708 | MS.gene51596:intron | 30.0% |
| ! | TGGGTGTTTTCACATTAAAT+TGG | - | chr7.2:28039957-28039976 | None:intergenic | 30.0% |
| !! | CCTAATGTATAATTTTTCGG+TGG | + | chr7.2:28040991-28041010 | MS.gene51596:intron | 30.0% |
| !! | TATTAGTACCATTTGGTGTT+GGG | + | chr7.2:28041124-28041143 | MS.gene51596:intron | 30.0% |
| !! | TTATTAGTACCATTTGGTGT+TGG | + | chr7.2:28041123-28041142 | MS.gene51596:intron | 30.0% |
| !!! | AACCCACTTGTTTTACATTT+CGG | + | chr7.2:28042303-28042322 | MS.gene51596:intron | 30.0% |
| AAAATCAACCCAACACCAAA+TGG | - | chr7.2:28041135-28041154 | None:intergenic | 35.0% | |
| AACCCGAAATGTAAAACAAG+TGG | - | chr7.2:28042309-28042328 | None:intergenic | 35.0% | |
| AATAGTTCGGCTTATATCTC+AGG | + | chr7.2:28041981-28042000 | MS.gene51596:CDS | 35.0% | |
| ACCCGAAATGTAAAACAAGT+GGG | - | chr7.2:28042308-28042327 | None:intergenic | 35.0% | |
| AGAAGATAGAGAGATTGATG+AGG | + | chr7.2:28040344-28040363 | MS.gene51596:intron | 35.0% | |
| AGTTTAATCAAATGGACCGT+CGG | - | chr7.2:28041529-28041548 | None:intergenic | 35.0% | |
| CAATGATTGAAAGTCATGCA+GGG | + | chr7.2:28040742-28040761 | MS.gene51596:intron | 35.0% | |
| CGAACTATTTGCATATCAGA+AGG | - | chr7.2:28041970-28041989 | None:intergenic | 35.0% | |
| CTGCACAATCAAAGTATACA+AGG | + | chr7.2:28039448-28039467 | MS.gene51596:CDS | 35.0% | |
| GAAGATAGAGAGATTGATGA+GGG | + | chr7.2:28040345-28040364 | MS.gene51596:intron | 35.0% | |
| TAGGGAAGTCAAAATCAGAT+AGG | - | chr7.2:28041872-28041891 | None:intergenic | 35.0% | |
| TCAATGATTGAAAGTCATGC+AGG | + | chr7.2:28040741-28040760 | MS.gene51596:intron | 35.0% | |
| TCTCAGCAATTTATAACCGA+CGG | + | chr7.2:28041510-28041529 | MS.gene51596:intron | 35.0% | |
| TTCATTGAAGCTTCAATCGT+GGG | - | chr7.2:28041470-28041489 | None:intergenic | 35.0% | |
| ! | ATAACCAAGCGGTATTCTTT+TGG | + | chr7.2:28039678-28039697 | MS.gene51596:intron | 35.0% |
| ! | GTATATGATTTGGCCAGATA+GGG | - | chr7.2:28041890-28041909 | None:intergenic | 35.0% |
| ! | TGGTGATGAAAAATTGTGTG+TGG | - | chr7.2:28039564-28039583 | None:intergenic | 35.0% |
| ! | TTAGGAACATACTTCGAGTT+TGG | - | chr7.2:28040809-28040828 | None:intergenic | 35.0% |
| !! | AAAGTATACAAGGTTCTGGA+AGG | + | chr7.2:28039458-28039477 | MS.gene51596:CDS | 35.0% |
| !! | AGGAAGATCTCCTAGTTTTT+CGG | + | chr7.2:28042205-28042224 | MS.gene51596:CDS | 35.0% |
| !! | CAGTAACAAAGTGTTTTCAC+TGG | - | chr7.2:28040518-28040537 | None:intergenic | 35.0% |
| !!! | ACCCACTTGTTTTACATTTC+GGG | + | chr7.2:28042304-28042323 | MS.gene51596:intron | 35.0% |
| !!! | ATTTGGTGTTGGGTTGATTT+TGG | + | chr7.2:28041134-28041153 | MS.gene51596:intron | 35.0% |
| AAGAACCAAGAAGAGATCAC+GGG | - | chr7.2:28040015-28040034 | None:intergenic | 40.0% | |
| AGAAGAAAGGTCACAACACA+TGG | - | chr7.2:28039985-28040004 | None:intergenic | 40.0% | |
| AGCTTAACAGAACTAAGGCA+AGG | + | chr7.2:28040766-28040785 | MS.gene51596:CDS | 40.0% | |
| AGGGAAGCTTAACAGAACTA+AGG | + | chr7.2:28040761-28040780 | MS.gene51596:intron | 40.0% | |
| ATTTCAGACTTGCAGCAAAC+TGG | + | chr7.2:28041944-28041963 | MS.gene51596:intron | 40.0% | |
| CTGAAGGAAAAGAAACTGGT+AGG | + | chr7.2:28042258-28042277 | MS.gene51596:intron | 40.0% | |
| CTTCATTGAAGCTTCAATCG+TGG | - | chr7.2:28041471-28041490 | None:intergenic | 40.0% | |
| GAAGAAAGGTCACAACACAT+GGG | - | chr7.2:28039984-28040003 | None:intergenic | 40.0% | |
| GAAGAACCAAGAAGAGATCA+CGG | - | chr7.2:28040016-28040035 | None:intergenic | 40.0% | |
| GACTAGGCAACATGTAAGAA+AGG | + | chr7.2:28042185-28042204 | MS.gene51596:intron | 40.0% | |
| GCTGCAATGGCATGTTTATA+CGG | + | chr7.2:28041827-28041846 | MS.gene51596:intron | 40.0% | |
| GTTTCAATCATAGGCTGCAA+TGG | + | chr7.2:28041814-28041833 | MS.gene51596:intron | 40.0% | |
| TACATGGGTCAAGTGAAACT+GGG | + | chr7.2:28040305-28040324 | MS.gene51596:intron | 40.0% | |
| TATAGCTTAGCACTATTGCG+TGG | + | chr7.2:28041413-28041432 | MS.gene51596:intron | 40.0% | |
| TCACCTGAAGGAAAAGAAAC+TGG | + | chr7.2:28042254-28042273 | MS.gene51596:CDS | 40.0% | |
| TCTGATTCTACTTCTTGCTG+AGG | - | chr7.2:28039378-28039397 | None:intergenic | 40.0% | |
| TGCAGCCTATGATTGAAACA+CGG | - | chr7.2:28041813-28041832 | None:intergenic | 40.0% | |
| TTACATGGGTCAAGTGAAAC+TGG | + | chr7.2:28040304-28040323 | MS.gene51596:intron | 40.0% | |
| TTTGCCAAAAGAATACCGCT+TGG | - | chr7.2:28039685-28039704 | None:intergenic | 40.0% | |
| ! | CGTATATGATTTGGCCAGAT+AGG | - | chr7.2:28041891-28041910 | None:intergenic | 40.0% |
| ! | CTACCAGTTTCTTTTCCTTC+AGG | - | chr7.2:28042260-28042279 | None:intergenic | 40.0% |
| ! | GTCACAACACATGGGTTTTT+GGG | - | chr7.2:28039976-28039995 | None:intergenic | 40.0% |
| !! | GGAAGATCTCCTAGTTTTTC+GGG | + | chr7.2:28042206-28042225 | MS.gene51596:CDS | 40.0% |
| !!! | CTGATTTTGACTTCCCTATC+TGG | + | chr7.2:28041874-28041893 | MS.gene51596:intron | 40.0% |
| AATCCTCGAACTGATTGCCA+TGG | + | chr7.2:28041776-28041795 | MS.gene51596:intron | 45.0% | |
| AGGTGACTATGAGAACGACT+TGG | - | chr7.2:28042240-28042259 | None:intergenic | 45.0% | |
| AGTGAAACTGGGAAGGAGAA+AGG | + | chr7.2:28040316-28040335 | MS.gene51596:intron | 45.0% | |
| GCAATGGCATGTTTATACGG+TGG | + | chr7.2:28041830-28041849 | MS.gene51596:intron | 45.0% | |
| GGTGACTATGAGAACGACTT+GGG | - | chr7.2:28042239-28042258 | None:intergenic | 45.0% | |
| GTGAAACTGGGAAGGAGAAA+GGG | + | chr7.2:28040317-28040336 | MS.gene51596:intron | 45.0% | |
| TAGAGAGATTGATGAGGGAG+AGG | + | chr7.2:28040350-28040369 | MS.gene51596:intron | 45.0% | |
| TCGTTCTCATAGTCACCTGA+AGG | + | chr7.2:28042242-28042261 | MS.gene51596:CDS | 45.0% | |
| TGTCAAAGAATGAACCGGTG+CGG | + | chr7.2:28040662-28040681 | MS.gene51596:intron | 45.0% | |
| ! | CGGTGGTGGTAGCAATTTAT+TGG | + | chr7.2:28040682-28040701 | MS.gene51596:intron | 45.0% |
| ! | GGTCACAACACATGGGTTTT+TGG | - | chr7.2:28039977-28039996 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+GGG | + | chr7.2:28039852-28039871 | MS.gene51596:intron | 5.0% |
| !! | TATATATATATATATTGAAA+AGG | - | chr7.2:28039823-28039842 | None:intergenic | 5.0% |
| ACGCGCCGTGTTTCAATCAT+AGG | + | chr7.2:28041805-28041824 | MS.gene51596:intron | 50.0% | |
| AGATTGATGAGGGAGAGGCA+CGG | + | chr7.2:28040355-28040374 | MS.gene51596:intron | 50.0% | |
| AGCTTAGCACTATTGCGTGG+CGG | + | chr7.2:28041416-28041435 | MS.gene51596:intron | 50.0% | |
| CACGGGTGAGAGAAGAAGAA+AGG | - | chr7.2:28039998-28040017 | None:intergenic | 50.0% | |
| CTTAGAGGCAGAAGAACTCC+TGG | - | chr7.2:28041024-28041043 | None:intergenic | 50.0% | |
| GAAGCTTCAATCGTGGGTAG+CGG | - | chr7.2:28041464-28041483 | None:intergenic | 50.0% | |
| GCAGCTGCATCATTCTCAAG+CGG | - | chr7.2:28039408-28039427 | None:intergenic | 50.0% | |
| GGTTCACTGCCCGAAAAACT+AGG | - | chr7.2:28042218-28042237 | None:intergenic | 50.0% | |
| TCTCACCCGTGATCTCTTCT+TGG | + | chr7.2:28040007-28040026 | MS.gene51596:intron | 50.0% | |
| TGGGTCAAGTGAAACTGGGA+AGG | + | chr7.2:28040309-28040328 | MS.gene51596:intron | 50.0% | |
| ! | GGGGGCATATCAAGTGAGAA+TGG | + | chr7.2:28039871-28039890 | MS.gene51596:intron | 50.0% |
| !! | TTTTTCGGTGGCAGTGTTCC+AGG | + | chr7.2:28041003-28041022 | MS.gene51596:intron | 50.0% |
| AATTGCTACCACCACCGCAC+CGG | - | chr7.2:28040679-28040698 | None:intergenic | 55.0% | |
| ACGCCATGGCAATCAGTTCG+AGG | - | chr7.2:28041782-28041801 | None:intergenic | 55.0% | |
| CAAAGAATGAACCGGTGCGG+TGG | + | chr7.2:28040665-28040684 | MS.gene51596:intron | 55.0% | |
| ACACGGCGCGTATAACGCCA+TGG | - | chr7.2:28041796-28041815 | None:intergenic | 60.0% | |
| AGAATGAACCGGTGCGGTGG+TGG | + | chr7.2:28040668-28040687 | MS.gene51596:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28039360 | 28042399 | 28039360 | ID=MS.gene51596 |
| chr7.2 | mRNA | 28039360 | 28042399 | 28039360 | ID=MS.gene51596.t1;Parent=MS.gene51596 |
| chr7.2 | exon | 28039360 | 28039479 | 28039360 | ID=MS.gene51596.t1.exon1;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28039360 | 28039479 | 28039360 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| chr7.2 | exon | 28040763 | 28040816 | 28040763 | ID=MS.gene51596.t1.exon2;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28040763 | 28040816 | 28040763 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| chr7.2 | exon | 28041017 | 28041045 | 28041017 | ID=MS.gene51596.t1.exon3;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28041017 | 28041045 | 28041017 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| chr7.2 | exon | 28041951 | 28042022 | 28041951 | ID=MS.gene51596.t1.exon4;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28041951 | 28042022 | 28041951 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| chr7.2 | exon | 28042191 | 28042275 | 28042191 | ID=MS.gene51596.t1.exon5;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28042191 | 28042275 | 28042191 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| chr7.2 | exon | 28042343 | 28042399 | 28042343 | ID=MS.gene51596.t1.exon6;Parent=MS.gene51596.t1 |
| chr7.2 | CDS | 28042343 | 28042399 | 28042343 | ID=cds.MS.gene51596.t1;Parent=MS.gene51596.t1 |
| Gene Sequence |
| Protein sequence |
