AlfalfaGEDB | MS.gene51895

M. sativa cultivar XinJiangDaYe / MS.gene51895

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51895.t1	XP_003624592.1	98.5	340	5	0	1	340	1	340	1.30E-189	672.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51895.t1	Q84TD6	49.6	369	139	11	4	340	6	359	9.4e-80	298.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51895.t1	G7KZD3	98.5	340	5	0	1	340	1	340	9.4e-190	672.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene51895.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055150	MS.gene51895	0.819377	1.20E-52	-1.69E-46
MS.gene057174	MS.gene51895	0.800793	1.22E-48	-1.69E-46
MS.gene059867	MS.gene51895	0.816217	6.20E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51895.t1	MTR_7g085220	98.824	340	4	0	1	340	1	340	0.0	703
MS.gene51895.t1	MTR_2g080010	67.172	198	46	5	2	187	9	199	1.89e-91	277
MS.gene51895.t1	MTR_2157s0010	60.759	237	59	5	8	238	8	216	1.00e-88	267
MS.gene51895.t1	MTR_4g089135	64.211	190	42	3	3	173	10	192	4.78e-84	258
MS.gene51895.t1	MTR_5g041940	54.202	238	85	5	8	244	3	217	3.80e-80	245
MS.gene51895.t1	MTR_7g100990	50.763	262	96	7	5	265	8	237	1.79e-79	246
MS.gene51895.t1	MTR_4g081870	55.310	226	80	5	6	231	7	211	7.01e-79	242
MS.gene51895.t1	MTR_2g093810	65.714	175	51	3	8	181	14	180	1.23e-78	243
MS.gene51895.t1	MTR_3g088110	61.497	187	60	3	5	191	4	178	1.98e-78	242
MS.gene51895.t1	MTR_8g094580	58.564	181	65	1	8	188	7	177	1.86e-73	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51895.t1	AT3G04070	51.892	370	129	13	4	340	6	359	1.22e-108	321
MS.gene51895.t1	AT3G04070	53.390	354	132	13	4	340	6	343	2.71e-108	320
MS.gene51895.t1	AT1G61110	68.927	177	39	4	1	169	9	177	3.04e-84	258
MS.gene51895.t1	AT1G69490	51.698	265	112	5	3	263	4	256	2.17e-83	254
MS.gene51895.t1	AT3G15510	68.639	169	39	3	12	173	21	182	4.19e-81	251
MS.gene51895.t1	AT1G01720	56.219	201	78	1	8	208	7	197	7.55e-77	238
MS.gene51895.t1	AT1G52880	68.902	164	40	3	12	170	21	178	2.03e-76	238
MS.gene51895.t1	AT1G77450	66.049	162	44	3	8	169	10	160	2.31e-74	230
MS.gene51895.t1	AT4G27410	63.253	166	48	3	5	170	11	163	2.42e-74	231
MS.gene51895.t1	AT3G15500	62.722	169	50	3	5	173	11	166	3.73e-72	227

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Find 82 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTGCAAGGCCAAACA+GGG	0.643288	7.4:-22090565	MS.gene51895:CDS
AACAGAATCATCAGAAACTA+TGG	0.378730	7.4:-22090080	MS.gene51895:CDS
AACTCAAGTATTTCTTTGAT+GGG	0.477999	7.4:+22089717	None:intergenic
AACTCATTCTTCACTACCTT+AGG	0.494410	7.4:-22090885	MS.gene51895:CDS
AACTTGTTCCAATTCCTGAT+GGG	0.488918	7.4:+22089876	None:intergenic
AAGCTGGTGCTTTAAAGTGT+TGG	0.507075	7.4:+22089766	None:intergenic
AATATCAACTTCAGCAATGA+TGG	0.422653	7.4:+22090831	None:intergenic
AATTGTTGCTAGTGTTGATT+TGG	0.352114	7.4:+22089813	None:intergenic
ACATGGCAATGATGCCACTA+TGG	0.444972	7.4:+22090500	None:intergenic
ACTTCAGCAATGATGGAAAC+AGG	0.451615	7.4:+22090838	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGAATCATCAGAAACTA+TGG	-	chr7.4:22090470-22090489	MS.gene51895:CDS	30.0%
AATATCAACTTCAGCAATGA+TGG	+	chr7.4:22089722-22089741	None:intergenic	30.0%
AGATCACAAGAGAACATTAT+TGG	-	chr7.4:22090082-22090101	MS.gene51895:CDS	30.0%
AGCATCTAATAGGTTTGAAA+AGG	+	chr7.4:22090607-22090626	None:intergenic	30.0%
CATACTGTGAATTGATGTTA+GGG	+	chr7.4:22090872-22090891	None:intergenic	30.0%
GAACTCAAGTATTTCTTTGA+TGG	+	chr7.4:22090837-22090856	None:intergenic	30.0%
GAAGAATCTTTGAGCTTAAT+AGG	+	chr7.4:22090205-22090224	None:intergenic	30.0%
TCATACTGTGAATTGATGTT+AGG	+	chr7.4:22090873-22090892	None:intergenic	30.0%
TCATCAAAGATTGCTTCATA+AGG	+	chr7.4:22090902-22090921	None:intergenic	30.0%
TTAATAATGTGTGATGTGGA+AGG	-	chr7.4:22089861-22089880	MS.gene51895:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	22089607	22090965	22089607	ID=MS.gene51895
chr7.4	mRNA	22089607	22090965	22089607	ID=MS.gene51895.t1;Parent=MS.gene51895
chr7.4	exon	22090803	22090965	22090803	ID=MS.gene51895.t1.exon1;Parent=MS.gene51895.t1
chr7.4	CDS	22090803	22090965	22090803	ID=cds.MS.gene51895.t1;Parent=MS.gene51895.t1
chr7.4	exon	22090341	22090648	22090341	ID=MS.gene51895.t1.exon2;Parent=MS.gene51895.t1
chr7.4	CDS	22090341	22090648	22090341	ID=cds.MS.gene51895.t1;Parent=MS.gene51895.t1
chr7.4	exon	22089607	22090158	22089607	ID=MS.gene51895.t1.exon3;Parent=MS.gene51895.t1
chr7.4	CDS	22089607	22090158	22089607	ID=cds.MS.gene51895.t1;Parent=MS.gene51895.t1

Gene Sequence

>MS.gene51895

ATGGGAACCCCACAGACCAATTTGCCACCAGGTTTTAGGTTCCACCCTACTGATGCAGAACTCATTCTTCACTACCTTAGGAAAAAAATTGCCTCCATTCCCTTGCCTGTTTCCATCATTGCTGAAGTTGATATTTATAAGTTGGATCCATGGGATTTACCAGGTTTGTATTCTATAAATTTAAATTTAAAGGTACATATATTTGATCCAAAATATATGTATGTACTTTTTTATATTACTTTTTTTAAAAAAATTTAATAATGTGTGATGTGGAAGGTTAATTTACTTTTAGTTTGTTGTGGTTTCTTTATTTTCAGCTAAAGCTTCATTTGGCGAGAAAGAATGGTACTTTTTTAGTCCTAGAGATAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGCACTGATAAGACCATAGTGGCATCATTGCCATGTGGAGGAGGAAGATCACAAGAGAACATTATTGGTGTCAAAAAGGCTCTTGTTTTTTACAAAGGAAAACCTCCAAAGGGTATTAAGACTAATTGGATCATGCATGAATATCGTCTTGTTGACAACAATAAACCTATTAAGCTCAAAGATTCTTCCATGAGGGTGAGTTTAGATTGCAGTCGCGTCGCAATTAAATGTGACTAATGCAATATCAACCATAGTCTTGCCACAATCGAACAAAGACATCAAAAAGATAAACTTTGATGTAGTTGTTCGACTGTGGTCACGTATTTTTTTAGATGTATCTTAGACTAATGTTATTCTTGGAATTATTGTTTGTGCAGTTGGATGATTGGGTGCTATGCCGAATTTACAAGAAATCAAAATGTGCACTAACTTCAACAGAATCATCAGAAACTATGGTTGGTGAAGTGGAACATGCAGAAGAGACACAATTCCAAGAAACCCTTTTTCCAATCACCAAAAACACAACATCACCTCTTCAAAACACACTCATGTCTCAAAAATCAGTGTCCTTTTCAAACCTATTAGATGCTATGGACTACTCCATGTTGAGCAGCTTCTTATCTGAAAATTCCAACAACCCATCAGGAATTGGAACAAGTTCAGGTTTCAACACTGAAAATTTTAATCAACAACAATCTTCCCAAATCAACACTAGCAACAATTACATGTCTCAAAAGAATCCTCAATCCAACACTTTAAAGCACCAGCTTTCAAACATAGATGAGGAAATGTTATACCCATCAAAGAAATACTTGAGTTCCTCTTGCAATTTCCCTAACATCAATTCACAGTATGAAAACTACCTTATGAAGCAATCTTTGATGAATCAACAATTGCTTTTAGGTCCTCATCATCAATATCAAGGCTAA

Protein sequence

>MS.gene51895.t1

MGTPQTNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWDLPAKASFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPCGGGRSQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKCALTSTESSETMVGEVEHAEETQFQETLFPITKNTTSPLQNTLMSQKSVSFSNLLDAMDYSMLSSFLSENSNNPSGIGTSSGFNTENFNQQQSSQINTSNNYMSQKNPQSNTLKHQLSNIDEEMLYPSKKYLSSSCNFPNINSQYENYLMKQSLMNQQLLLGPHHQYQG