Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51901.t1 | QCD97309.1 | 63.1 | 916 | 279 | 3 | 1 | 860 | 1 | 913 | 0.00E+00 | 1185.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51901.t1 | P52914 | 70.3 | 435 | 128 | 1 | 11 | 444 | 1 | 435 | 1.8e-180 | 634.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51901.t1 | A0A4D6M7F8 | 63.1 | 916 | 279 | 3 | 1 | 860 | 1 | 913 | 0.0e+00 | 1185.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene51901 | 0.838084 | 3.55E-57 | -1.69E-46 |
| MS.gene050297 | MS.gene51901 | 0.814721 | 1.33E-51 | -1.69E-46 |
| MS.gene052143 | MS.gene51901 | 0.803485 | 3.41E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene51901 | 0.815245 | 1.02E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene51901 | 0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene055251 | MS.gene51901 | 0.814643 | 1.39E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene51901 | 0.815724 | 7.98E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene51901 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene06057 | MS.gene51901 | 0.827383 | 1.61E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51901.t1 | MTR_7g085180 | 96.154 | 416 | 16 | 0 | 445 | 860 | 40 | 455 | 0.0 | 841 |
| MS.gene51901.t1 | MTR_7g085180 | 90.847 | 437 | 39 | 1 | 11 | 446 | 1 | 437 | 0.0 | 830 |
| MS.gene51901.t1 | MTR_7g085150 | 71.812 | 447 | 123 | 3 | 1 | 444 | 12 | 458 | 0.0 | 645 |
| MS.gene51901.t1 | MTR_7g085150 | 73.206 | 418 | 110 | 2 | 445 | 860 | 61 | 478 | 0.0 | 622 |
| MS.gene51901.t1 | MTR_7g085120 | 73.621 | 417 | 109 | 1 | 445 | 860 | 40 | 456 | 0.0 | 628 |
| MS.gene51901.t1 | MTR_7g085120 | 72.381 | 420 | 115 | 1 | 26 | 444 | 17 | 436 | 0.0 | 623 |
| MS.gene51901.t1 | MTR_7g085200 | 69.355 | 434 | 133 | 0 | 11 | 444 | 1 | 434 | 0.0 | 616 |
| MS.gene51901.t1 | MTR_7g085200 | 67.788 | 416 | 134 | 0 | 445 | 860 | 39 | 454 | 0.0 | 583 |
| MS.gene51901.t1 | MTR_7g085200 | 69.037 | 436 | 133 | 1 | 11 | 444 | 1 | 436 | 0.0 | 611 |
| MS.gene51901.t1 | MTR_7g085200 | 67.464 | 418 | 134 | 1 | 445 | 860 | 39 | 456 | 0.0 | 578 |
| MS.gene51901.t1 | MTR_7g085150 | 71.971 | 421 | 115 | 3 | 1 | 418 | 12 | 432 | 0.0 | 605 |
| MS.gene51901.t1 | MTR_7g085150 | 73.118 | 372 | 98 | 2 | 445 | 814 | 61 | 432 | 0.0 | 550 |
| MS.gene51901.t1 | MTR_4g036220 | 65.247 | 446 | 120 | 4 | 1 | 444 | 1 | 413 | 0.0 | 560 |
| MS.gene51901.t1 | MTR_4g036220 | 65.707 | 417 | 109 | 3 | 445 | 860 | 50 | 433 | 0.0 | 536 |
| MS.gene51901.t1 | MTR_7g085090 | 55.916 | 431 | 187 | 2 | 15 | 444 | 29 | 457 | 4.47e-166 | 491 |
| MS.gene51901.t1 | MTR_7g085090 | 57.711 | 402 | 167 | 2 | 449 | 849 | 67 | 466 | 3.01e-162 | 481 |
| MS.gene51901.t1 | MTR_6g033000 | 53.191 | 423 | 197 | 1 | 23 | 444 | 50 | 472 | 2.62e-150 | 451 |
| MS.gene51901.t1 | MTR_6g033000 | 55.087 | 403 | 180 | 1 | 449 | 850 | 80 | 482 | 1.24e-149 | 449 |
| MS.gene51901.t1 | MTR_7g085160 | 75.281 | 178 | 33 | 2 | 683 | 860 | 53 | 219 | 1.45e-76 | 248 |
| MS.gene51901.t1 | MTR_7g085160 | 78.481 | 158 | 31 | 1 | 287 | 444 | 53 | 207 | 1.47e-71 | 234 |
| MS.gene51901.t1 | MTR_5g040710 | 30.719 | 306 | 175 | 10 | 443 | 724 | 72 | 364 | 1.80e-33 | 137 |
| MS.gene51901.t1 | MTR_5g040710 | 27.840 | 449 | 253 | 18 | 8 | 424 | 42 | 451 | 6.57e-33 | 135 |
| MS.gene51901.t1 | MTR_4g105480 | 23.380 | 355 | 191 | 10 | 13 | 309 | 21 | 352 | 1.00e-20 | 97.4 |
| MS.gene51901.t1 | MTR_4g105480 | 21.519 | 474 | 272 | 16 | 442 | 844 | 44 | 488 | 6.56e-19 | 91.7 |
| MS.gene51901.t1 | MTR_8g072360 | 33.158 | 190 | 105 | 4 | 48 | 215 | 96 | 285 | 6.07e-20 | 95.5 |
| MS.gene51901.t1 | MTR_8g072360 | 33.696 | 184 | 100 | 4 | 450 | 611 | 102 | 285 | 9.54e-19 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51901.t1 | AT5G18280 | 53.483 | 402 | 186 | 1 | 449 | 849 | 70 | 471 | 1.68e-148 | 446 |
| MS.gene51901.t1 | AT5G18280 | 52.099 | 405 | 193 | 1 | 41 | 444 | 58 | 462 | 1.08e-143 | 433 |
| MS.gene51901.t1 | AT3G04080 | 52.488 | 402 | 190 | 1 | 449 | 849 | 69 | 470 | 2.66e-143 | 432 |
| MS.gene51901.t1 | AT3G04080 | 49.762 | 420 | 210 | 1 | 26 | 444 | 42 | 461 | 8.42e-139 | 421 |
| MS.gene51901.t1 | AT1G14250 | 28.798 | 441 | 257 | 13 | 435 | 847 | 55 | 466 | 2.09e-41 | 159 |
| MS.gene51901.t1 | AT1G14250 | 28.761 | 452 | 253 | 17 | 6 | 423 | 29 | 445 | 2.44e-40 | 156 |
| MS.gene51901.t1 | AT1G14230 | 28.571 | 427 | 243 | 11 | 450 | 847 | 81 | 474 | 3.77e-41 | 159 |
| MS.gene51901.t1 | AT1G14230 | 28.118 | 473 | 261 | 17 | 6 | 445 | 42 | 468 | 2.42e-40 | 156 |
| MS.gene51901.t1 | AT1G14240 | 29.356 | 419 | 249 | 11 | 450 | 847 | 70 | 462 | 5.37e-41 | 158 |
| MS.gene51901.t1 | AT1G14240 | 28.355 | 462 | 276 | 12 | 7 | 445 | 27 | 456 | 1.21e-39 | 154 |
| MS.gene51901.t1 | AT1G14240 | 29.356 | 419 | 249 | 11 | 450 | 847 | 70 | 462 | 5.37e-41 | 158 |
| MS.gene51901.t1 | AT1G14240 | 28.355 | 462 | 276 | 12 | 7 | 445 | 27 | 456 | 1.21e-39 | 154 |
| MS.gene51901.t1 | AT1G14240 | 29.356 | 419 | 249 | 11 | 450 | 847 | 70 | 462 | 5.37e-41 | 158 |
| MS.gene51901.t1 | AT1G14240 | 28.355 | 462 | 276 | 12 | 7 | 445 | 27 | 456 | 1.21e-39 | 154 |
| MS.gene51901.t1 | AT1G14240 | 28.878 | 419 | 247 | 12 | 450 | 847 | 70 | 458 | 8.92e-38 | 148 |
| MS.gene51901.t1 | AT1G14240 | 27.922 | 462 | 274 | 13 | 7 | 445 | 27 | 452 | 1.98e-36 | 144 |
| MS.gene51901.t1 | AT2G02970 | 29.648 | 398 | 231 | 13 | 54 | 423 | 87 | 463 | 4.33e-37 | 147 |
| MS.gene51901.t1 | AT2G02970 | 28.132 | 423 | 252 | 14 | 450 | 845 | 87 | 484 | 3.31e-36 | 145 |
| MS.gene51901.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 52 | 288 | 143 | 401 | 2.27e-17 | 87.4 |
| MS.gene51901.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 52 | 288 | 143 | 401 | 2.27e-17 | 87.4 |
| MS.gene51901.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 52 | 288 | 143 | 401 | 2.27e-17 | 87.4 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTATGTATTGGGGAATT+TGG | 0.093358 | 7.4:-22172708 | MS.gene51901:CDS |
| TAACTATGTATTGGGGAATT+TGG | 0.093358 | 7.4:-22178554 | MS.gene51901:CDS |
| TGCAGGCAACCGCGGGTTTA+AGG | 0.202461 | 7.4:-22179911 | MS.gene51901:intron |
| AGCATGGAATTAGGTTTATT+TGG | 0.205910 | 7.4:+22176967 | None:intergenic |
| AGTATGGAATTAGGTTTATT+TGG | 0.217073 | 7.4:+22171141 | None:intergenic |
| AAAATCTCTCATTCCACTTT+TGG | 0.222729 | 7.4:-22175096 | MS.gene51901:CDS |
| CCCAAGCCTAAGGGGTGTTT+TGG | 0.226847 | 7.4:+22175037 | None:intergenic |
| AGCACAAGCTTCTTAATATA+TGG | 0.233885 | 7.4:+22172566 | None:intergenic |
| AGCACAAGCTTCTTAATATA+TGG | 0.233885 | 7.4:+22178412 | None:intergenic |
| AACTATGTATTGGGGAATTT+GGG | 0.257906 | 7.4:-22172707 | MS.gene51901:CDS |
| AACTATGTATTGGGGAATTT+GGG | 0.257906 | 7.4:-22178553 | MS.gene51901:CDS |
| ACTGGATGAAGCATGGAATT+AGG | 0.266923 | 7.4:+22176958 | None:intergenic |
| CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.4:+22172913 | None:intergenic |
| CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.4:+22179675 | None:intergenic |
| ACTGGATGAAGTATGGAATT+AGG | 0.275392 | 7.4:+22171132 | None:intergenic |
| CCCAAGCCTAAGGGGTGTTT+TGG | 0.282023 | 7.4:+22182260 | None:intergenic |
| CCCTATCCGAGTTGCACTTT+TGG | 0.286988 | 7.4:-22171358 | MS.gene51901:CDS |
| CCCTATCCGAGTTGCACTTT+TGG | 0.286988 | 7.4:-22177190 | MS.gene51901:CDS |
| GAGGTTAGGGCTTCTTGTTT+TGG | 0.293335 | 7.4:+22182587 | None:intergenic |
| AAAGGGACCTTTACATATTC+AGG | 0.293841 | 7.4:-22171475 | MS.gene51901:intron |
| AAAGGGACCTTTACATATTC+AGG | 0.293841 | 7.4:-22177307 | MS.gene51901:intron |
| AAACTTAGGTAACGCTGATA+TGG | 0.305974 | 7.4:+22170596 | None:intergenic |
| CAACATGTGTTGCTCGTTCA+TGG | 0.311386 | 7.4:-22170994 | MS.gene51901:CDS |
| CAACATGTGTTGCTCGTTCA+TGG | 0.311386 | 7.4:-22176820 | MS.gene51901:CDS |
| GTGACAGTTAACTATGTATT+GGG | 0.320917 | 7.4:-22172716 | MS.gene51901:CDS |
| GTGACAGTTAACTATGTATT+GGG | 0.320917 | 7.4:-22178562 | MS.gene51901:CDS |
| GAAATCTACTGGATGAAGTA+TGG | 0.326285 | 7.4:+22171125 | None:intergenic |
| CTCCGTAAGACGAGGATAAA+TGG | 0.342782 | 7.4:+22176879 | None:intergenic |
| ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.4:-22171461 | MS.gene51901:CDS |
| ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.4:-22177293 | MS.gene51901:CDS |
| AACCGCGGGTTTAAGGCTTT+TGG | 0.352299 | 7.4:-22179904 | MS.gene51901:CDS |
| AATATGATCTCTATGTTCAT+AGG | 0.360539 | 7.4:-22172532 | MS.gene51901:intron |
| AATATGATCTCTATGTTCAT+AGG | 0.360539 | 7.4:-22178378 | MS.gene51901:intron |
| TTGCAAAGAAATAATTCTTA+AGG | 0.362668 | 7.4:-22171404 | MS.gene51901:CDS |
| TTGCAAAGAAATAATTCTTA+AGG | 0.362668 | 7.4:-22177236 | MS.gene51901:CDS |
| GATGCAGTTTCAATTATAGA+TGG | 0.368431 | 7.4:-22179701 | MS.gene51901:CDS |
| CCAAAACACCCCTTAGGCTT+GGG | 0.369989 | 7.4:-22175037 | MS.gene51901:CDS |
| ATATGACAACATACGAGGTT+AGG | 0.374979 | 7.4:+22182573 | None:intergenic |
| GATCTAAGTTCTGATCAAAA+TGG | 0.383146 | 7.4:+22175334 | None:intergenic |
| TACTTCAGCTTTCGCTTACC+TGG | 0.385501 | 7.4:-22171287 | MS.gene51901:CDS |
| TACTTCAGCTTTCGCTTACC+TGG | 0.385501 | 7.4:-22177119 | MS.gene51901:CDS |
| CCAAAACACCCCTTAGGCTT+GGG | 0.387043 | 7.4:-22182260 | MS.gene51901:CDS |
| GCTTCAATTTCGAAATCTAC+TGG | 0.387215 | 7.4:+22171114 | None:intergenic |
| GCTTCAATTTCGAAATCTAC+TGG | 0.387215 | 7.4:+22176940 | None:intergenic |
| TCCTCTCCATCAGCAACTTT+AGG | 0.389941 | 7.4:+22172590 | None:intergenic |
| GATCTAAGTTCTGATCAAAA+TGG | 0.389966 | 7.4:+22182513 | None:intergenic |
| AAACCAGGTTTGAGTGCATA+TGG | 0.392234 | 7.4:-22175140 | MS.gene51901:CDS |
| TACATTAATCGCTTAAACTT+AGG | 0.392460 | 7.4:+22170582 | None:intergenic |
| TATGACAGCGTAAGAGGTTA+AGG | 0.393565 | 7.4:+22175395 | None:intergenic |
| CTCTCTTCCTCCCAATATCT+TGG | 0.395649 | 7.4:-22182641 | MS.gene51901:CDS |
| TGGAATGGTGGAGGAGGGAG+TGG | 0.402024 | 7.4:-22171328 | MS.gene51901:CDS |
| TGGAATGGTGGAGGAGGGAG+TGG | 0.402024 | 7.4:-22177160 | MS.gene51901:CDS |
| TTCTTTGCAATCATCAAAGT+TGG | 0.402098 | 7.4:+22171417 | None:intergenic |
| TTCTTTGCAATCATCAAAGT+TGG | 0.402098 | 7.4:+22177249 | None:intergenic |
| ATCAAATATGACAGCGTAAG+AGG | 0.408728 | 7.4:+22175389 | None:intergenic |
| TCTTGTAGTTACTTGCGCTT+TGG | 0.424535 | 7.4:-22172391 | MS.gene51901:intron |
| TCTTGTAGTTACTTGCGCTT+TGG | 0.424535 | 7.4:-22178237 | MS.gene51901:intron |
| GGTGACAGTTAACTATGTAT+TGG | 0.433794 | 7.4:-22172717 | MS.gene51901:CDS |
| GGTGACAGTTAACTATGTAT+TGG | 0.433794 | 7.4:-22178563 | MS.gene51901:CDS |
| ATCCATTTATCCTCGTCTTA+CGG | 0.437580 | 7.4:-22176881 | MS.gene51901:CDS |
| GATGCGGTTTCTATAATTGA+TGG | 0.439005 | 7.4:-22172939 | MS.gene51901:CDS |
| GTGTTGCTCGTTCATGGATT+TGG | 0.442498 | 7.4:-22170988 | MS.gene51901:intron |
| GTGTTGCTCGTTCATGGATT+TGG | 0.442498 | 7.4:-22176814 | MS.gene51901:intron |
| CCACATATAAGAACCTTCTT+GGG | 0.448076 | 7.4:+22172914 | None:intergenic |
| AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.4:-22171085 | MS.gene51901:CDS |
| AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.4:-22176911 | MS.gene51901:CDS |
| CCCAAGAAGGTTCTTATATG+TGG | 0.452789 | 7.4:-22172914 | MS.gene51901:CDS |
| CCCAAGAAGGTTCTTATATG+TGG | 0.452789 | 7.4:-22179676 | MS.gene51901:CDS |
| AAGAGATCCATGCATACATA+TGG | 0.457084 | 7.4:+22171021 | None:intergenic |
| AAGAGATCCATGCATACATA+TGG | 0.457084 | 7.4:+22176847 | None:intergenic |
| CCCAAAACACCCCTTAGGCT+TGG | 0.457810 | 7.4:-22175038 | MS.gene51901:CDS |
| CGCATCACGTTGAACGTTGA+GGG | 0.458557 | 7.4:+22172956 | None:intergenic |
| ATTATAGATGGAACCCAAGA+AGG | 0.461015 | 7.4:-22179689 | MS.gene51901:CDS |
| TATTGGGAGGAAGAGAGAGC+AGG | 0.461825 | 7.4:+22182647 | None:intergenic |
| GTGGAAGCTGCATGGCCTCT+AGG | 0.468068 | 7.4:-22170633 | MS.gene51901:CDS |
| GTGGAAGCTGCATGGCCTCT+AGG | 0.468068 | 7.4:-22176596 | MS.gene51901:intron |
| ACGAGAAATTACAGTGGGGC+AGG | 0.473748 | 7.4:-22176642 | MS.gene51901:CDS |
| TCCAAAACACCCCTTAGGCT+TGG | 0.473783 | 7.4:-22182261 | MS.gene51901:CDS |
| CCACATATAAGAACCTTCTT+GGG | 0.475690 | 7.4:+22179676 | None:intergenic |
| ATCCACTTATCCTCGACTTA+CGG | 0.480369 | 7.4:-22171055 | MS.gene51901:CDS |
| GGAATATGGAATGGTGGAGG+AGG | 0.482405 | 7.4:-22171334 | MS.gene51901:CDS |
| GGAATATGGAATGGTGGAGG+AGG | 0.482405 | 7.4:-22177166 | MS.gene51901:CDS |
| TGCAGGCAACCGCAGGTTTG+AGG | 0.484016 | 7.4:-22173149 | MS.gene51901:intron |
| GAAAACTCACCCCAAGCCTA+AGG | 0.486209 | 7.4:+22175027 | None:intergenic |
| TACGCTGTCATATTTGATGC+TGG | 0.490658 | 7.4:-22175384 | MS.gene51901:CDS |
| TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.4:+22171430 | None:intergenic |
| TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.4:+22177262 | None:intergenic |
| ATAATTGATGGAACCCAAGA+AGG | 0.492755 | 7.4:-22172927 | MS.gene51901:CDS |
| AATATATTACCATTAAATCC+AGG | 0.495788 | 7.4:+22172304 | None:intergenic |
| AATATATTACCATTAAATCC+AGG | 0.495788 | 7.4:+22178150 | None:intergenic |
| TCTTCTGCTTCCTCCAAAAG+TGG | 0.496021 | 7.4:+22175083 | None:intergenic |
| TATTAAGAAGCTTGTGCTCA+AGG | 0.501262 | 7.4:-22172561 | MS.gene51901:CDS |
| TATTAAGAAGCTTGTGCTCA+AGG | 0.501262 | 7.4:-22178407 | MS.gene51901:CDS |
| TATGACAACATACGAGGTTA+GGG | 0.506011 | 7.4:+22182574 | None:intergenic |
| GAAATGTGATGAGTGTGATT+AGG | 0.506969 | 7.4:+22182684 | None:intergenic |
| AACCAGGTTTGAGTGCATAT+GGG | 0.507093 | 7.4:-22175139 | MS.gene51901:CDS |
| AAAACTCACCCCAAGCCTAA+GGG | 0.507438 | 7.4:+22182251 | None:intergenic |
| CTCTCTGCTTCTTCTAGAAG+TGG | 0.508455 | 7.4:+22182306 | None:intergenic |
| TCCCCATATGCACTCAAACC+TGG | 0.510774 | 7.4:+22175137 | None:intergenic |
| TCCGCGTATGCACTCAAACC+TGG | 0.513693 | 7.4:+22182360 | None:intergenic |
| AATGCTCCTAAAGTTGCTGA+TGG | 0.518455 | 7.4:-22172596 | MS.gene51901:CDS |
| ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.4:-22175375 | MS.gene51901:CDS |
| ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.4:-22182554 | MS.gene51901:CDS |
| GAATATGGAATGGTGGAGGA+GGG | 0.520495 | 7.4:-22171333 | MS.gene51901:CDS |
| GAATATGGAATGGTGGAGGA+GGG | 0.520495 | 7.4:-22177165 | MS.gene51901:CDS |
| CAAAGAAGCAACTCGAGCAC+AGG | 0.521520 | 7.4:-22172368 | MS.gene51901:CDS |
| CAAAGAAGCAACTCGAGCAC+AGG | 0.521520 | 7.4:-22178214 | MS.gene51901:CDS |
| GGAGTAATTGACCTTGGAGG+TGG | 0.525763 | 7.4:-22172662 | MS.gene51901:CDS |
| AAAAGCTTCACAAACACAAT+GGG | 0.525793 | 7.4:-22178529 | MS.gene51901:CDS |
| CAAAGTTGGAGCCAGAAGAA+GGG | 0.531298 | 7.4:+22171431 | None:intergenic |
| CAAAGTTGGAGCCAGAAGAA+GGG | 0.531298 | 7.4:+22177263 | None:intergenic |
| AAAACTCACCCCAAGCCTAA+GGG | 0.532118 | 7.4:+22175028 | None:intergenic |
| CTCCACTCCTGAATATGTAA+AGG | 0.532753 | 7.4:+22171468 | None:intergenic |
| CTCCACTCCTGAATATGTAA+AGG | 0.532753 | 7.4:+22177300 | None:intergenic |
| TTAAATCCAGGTAAAATGCA+AGG | 0.532782 | 7.4:+22172316 | None:intergenic |
| TTAAATCCAGGTAAAATGCA+AGG | 0.532782 | 7.4:+22178162 | None:intergenic |
| GGAGTAATTGACCTTGGAGG+TGG | 0.533198 | 7.4:-22178508 | MS.gene51901:CDS |
| TATGTTGTCATATTTGATGC+TGG | 0.538638 | 7.4:-22182563 | MS.gene51901:CDS |
| ATATTAATGCAGGCAACCGC+GGG | 0.538900 | 7.4:-22179918 | MS.gene51901:intron |
| ACCAAAAGTGCAACTCGGAT+AGG | 0.539445 | 7.4:+22171357 | None:intergenic |
| ACCAAAAGTGCAACTCGGAT+AGG | 0.539445 | 7.4:+22177189 | None:intergenic |
| CCAAAAGTGCAACTCGGATA+GGG | 0.540474 | 7.4:+22171358 | None:intergenic |
| CCAAAAGTGCAACTCGGATA+GGG | 0.540474 | 7.4:+22177190 | None:intergenic |
| ATAATAATGCAGGCAACCGC+AGG | 0.543205 | 7.4:-22173156 | MS.gene51901:intron |
| AATATTAATGCAGGCAACCG+CGG | 0.543327 | 7.4:-22179919 | MS.gene51901:intron |
| CCGCATCACGTTGAACGTTG+AGG | 0.551181 | 7.4:+22172955 | None:intergenic |
| TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.4:-22170652 | MS.gene51901:CDS |
| TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.4:-22176615 | MS.gene51901:CDS |
| CCCACTGTAATTTCTCGTTG+AGG | 0.560516 | 7.4:+22176647 | None:intergenic |
| ATTAAGAAGCTTGTGCTCAA+GGG | 0.561023 | 7.4:-22172560 | MS.gene51901:CDS |
| ATTAAGAAGCTTGTGCTCAA+GGG | 0.561023 | 7.4:-22178406 | MS.gene51901:CDS |
| ATCCGTAAGTCGAGGATAAG+TGG | 0.562884 | 7.4:+22171053 | None:intergenic |
| GAAATCTACTGGATGAAGCA+TGG | 0.572004 | 7.4:+22176951 | None:intergenic |
| AAAGAGATTACAGTAGGTGA+GGG | 0.573833 | 7.4:-22170678 | MS.gene51901:CDS |
| GTGCAACTCGGATAGGGACA+TGG | 0.575560 | 7.4:+22171364 | None:intergenic |
| GTGCAACTCGGATAGGGACA+TGG | 0.575560 | 7.4:+22177196 | None:intergenic |
| TGATATTGAGTTTGTTGACA+AGG | 0.580220 | 7.4:-22175295 | MS.gene51901:intron |
| CCAAGAAGGTTCTTATATGT+GGG | 0.585394 | 7.4:-22179675 | MS.gene51901:intron |
| AATGCTCCTACAGTTGCTGA+TGG | 0.587301 | 7.4:-22178442 | MS.gene51901:CDS |
| AAAAGAGATTACAGTAGGTG+AGG | 0.588180 | 7.4:-22170679 | MS.gene51901:CDS |
| CAAAACACCCCTTAGGCTTG+GGG | 0.591469 | 7.4:-22175036 | MS.gene51901:intron |
| ACCAGGTTTGAGTGCATATG+GGG | 0.591814 | 7.4:-22175138 | MS.gene51901:CDS |
| TTTGGAGGAAGCAGAAGATG+TGG | 0.592449 | 7.4:-22175078 | MS.gene51901:CDS |
| GTGGGAGTAATTGACCTTGG+AGG | 0.593027 | 7.4:-22172665 | MS.gene51901:CDS |
| AAAGTTGGAGCCAGAAGAAG+GGG | 0.597511 | 7.4:+22171432 | None:intergenic |
| AAAGTTGGAGCCAGAAGAAG+GGG | 0.597511 | 7.4:+22177264 | None:intergenic |
| CCAAGAAGGTTCTTATATGT+GGG | 0.599714 | 7.4:-22172913 | MS.gene51901:intron |
| GGTGGAATATGGAATGGTGG+AGG | 0.599785 | 7.4:-22171337 | MS.gene51901:CDS |
| GGTGGAATATGGAATGGTGG+AGG | 0.599785 | 7.4:-22177169 | MS.gene51901:CDS |
| TCTGATCAAAATGGTAAACA+TGG | 0.600597 | 7.4:+22175343 | None:intergenic |
| TCCTAAAGTTGCTGATGGAG+AGG | 0.601540 | 7.4:-22172591 | MS.gene51901:CDS |
| CAAAACACCCCTTAGGCTTG+GGG | 0.601715 | 7.4:-22182259 | MS.gene51901:intron |
| TCAGTGGGAGTAATTGACCT+TGG | 0.602293 | 7.4:-22172668 | MS.gene51901:CDS |
| GACCTTTACATATTCAGGAG+TGG | 0.602637 | 7.4:-22171470 | MS.gene51901:CDS |
| GACCTTTACATATTCAGGAG+TGG | 0.602637 | 7.4:-22177302 | MS.gene51901:CDS |
| CATGAACGAGCAACACATGT+TGG | 0.602847 | 7.4:+22170995 | None:intergenic |
| CATGAACGAGCAACACATGT+TGG | 0.602847 | 7.4:+22176821 | None:intergenic |
| TCCTACAGTTGCTGATGGCG+AGG | 0.603140 | 7.4:-22178437 | MS.gene51901:CDS |
| TCTGATCAAAATGGTAGACA+TGG | 0.603308 | 7.4:+22182522 | None:intergenic |
| TGCTGAAAAGATATTGCAAG+CGG | 0.605130 | 7.4:-22179871 | MS.gene51901:intron |
| ACAATGGGAGTAATTGACCT+TGG | 0.607141 | 7.4:-22178514 | MS.gene51901:CDS |
| ATGGGAGTAATTGACCTTGG+AGG | 0.607884 | 7.4:-22178511 | MS.gene51901:CDS |
| CGAGAAATTACAGTGGGGCA+GGG | 0.609109 | 7.4:-22176641 | MS.gene51901:CDS |
| AAAAGCTTCACAAAATCAGT+GGG | 0.611541 | 7.4:-22172683 | MS.gene51901:CDS |
| TAAATCCAGGTAAAATGCAA+GGG | 0.612700 | 7.4:+22172317 | None:intergenic |
| TAAATCCAGGTAAAATGCAA+GGG | 0.612700 | 7.4:+22178163 | None:intergenic |
| GTTGTGATGTAGATCAAACC+AGG | 0.612719 | 7.4:-22175155 | MS.gene51901:intron |
| TAACGCTGATATGGCTTCCA+CGG | 0.618228 | 7.4:+22170605 | None:intergenic |
| CCTCAACGTTCAACGTGATG+CGG | 0.618286 | 7.4:-22172955 | MS.gene51901:CDS |
| AACTTAGATCTACTTCACAT+TGG | 0.619361 | 7.4:-22175321 | MS.gene51901:CDS |
| CCTCAACGAGAAATTACAGT+GGG | 0.620628 | 7.4:-22176647 | MS.gene51901:CDS |
| TTTGGTGGAATATGGAATGG+TGG | 0.623058 | 7.4:-22171340 | MS.gene51901:CDS |
| TTTGGTGGAATATGGAATGG+TGG | 0.623058 | 7.4:-22177172 | MS.gene51901:CDS |
| ACCAGGTTTGAGTGCATACG+CGG | 0.623511 | 7.4:-22182361 | MS.gene51901:CDS |
| AGCAGAAGATGTGGTTCCTG+AGG | 0.623737 | 7.4:-22175069 | MS.gene51901:CDS |
| TGCTGAAAAGATATTGCAAG+CGG | 0.630726 | 7.4:-22173109 | MS.gene51901:intron |
| ATCCAAAAGCCTTAAACCCG+CGG | 0.630783 | 7.4:+22179902 | None:intergenic |
| AAACTCACCCCAAGCCTAAG+GGG | 0.631016 | 7.4:+22182252 | None:intergenic |
| TTTGAACTGAACCACCTCCA+AGG | 0.632699 | 7.4:+22172651 | None:intergenic |
| TTTGAACTGAACCACCTCCA+AGG | 0.632699 | 7.4:+22178497 | None:intergenic |
| AAACTCACCCCAAGCCTAAG+GGG | 0.632954 | 7.4:+22175029 | None:intergenic |
| CAAAATGGTAGACATGGACA+CGG | 0.633528 | 7.4:+22182528 | None:intergenic |
| CATTTATCCTCGTCTTACGG+AGG | 0.636034 | 7.4:-22176878 | MS.gene51901:CDS |
| ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.4:-22170641 | MS.gene51901:CDS |
| ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.4:-22176604 | MS.gene51901:CDS |
| CCACGAAAAGAGATTACAGT+AGG | 0.642945 | 7.4:-22170684 | MS.gene51901:CDS |
| TGCATCCCAAAACACCCCTT+AGG | 0.643930 | 7.4:-22175043 | MS.gene51901:CDS |
| TGATATTGAGTTTGTTGACA+AGG | 0.645926 | 7.4:-22182474 | MS.gene51901:intron |
| AAAACGTCCATATGTATGCA+TGG | 0.646148 | 7.4:-22171028 | MS.gene51901:CDS |
| AAAACGTCCATATGTATGCA+TGG | 0.648697 | 7.4:-22176854 | MS.gene51901:CDS |
| TCCTCGCCATCAGCAACTGT+AGG | 0.650666 | 7.4:+22178436 | None:intergenic |
| ATTCAAAAGCCTCAAACCTG+CGG | 0.651264 | 7.4:+22173140 | None:intergenic |
| TGCACTCCAAAACACCCCTT+AGG | 0.653249 | 7.4:-22182266 | MS.gene51901:CDS |
| ATTCCACCAAAAGTGCAACT+CGG | 0.665214 | 7.4:+22171352 | None:intergenic |
| ATTCCACCAAAAGTGCAACT+CGG | 0.665214 | 7.4:+22177184 | None:intergenic |
| GATGTTATATAGATCAAACC+AGG | 0.666409 | 7.4:-22182378 | MS.gene51901:intron |
| TGACAGTTAACTATGTATTG+GGG | 0.677718 | 7.4:-22172715 | MS.gene51901:CDS |
| TGACAGTTAACTATGTATTG+GGG | 0.677718 | 7.4:-22178561 | MS.gene51901:CDS |
| ATCAAATATGACAACATACG+AGG | 0.698857 | 7.4:+22182568 | None:intergenic |
| ATGGCCTCTAGGTACTGCCG+TGG | 0.707657 | 7.4:-22170622 | MS.gene51901:CDS |
| AAAATGGTAGACATGGACAC+GGG | 0.710777 | 7.4:+22182529 | None:intergenic |
| GCTTCCACGGCAGTACCTAG+AGG | 0.713599 | 7.4:+22170618 | None:intergenic |
| TCCTCAACGAGAAATTACAG+TGG | 0.746771 | 7.4:-22176648 | MS.gene51901:CDS |
| CTCAACGAGAAATTACAGTG+GGG | 0.795665 | 7.4:-22176646 | MS.gene51901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 22170572 | 22182744 | 22170572 | ID=MS.gene51901 |
| chr7.4 | mRNA | 22170572 | 22182744 | 22170572 | ID=MS.gene51901.t1;Parent=MS.gene51901 |
| chr7.4 | exon | 22182475 | 22182744 | 22182475 | ID=MS.gene51901.t1.exon1;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22182475 | 22182744 | 22182475 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22182260 | 22182388 | 22182260 | ID=MS.gene51901.t1.exon2;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22182260 | 22182388 | 22182260 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22179872 | 22179928 | 22179872 | ID=MS.gene51901.t1.exon3;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22179872 | 22179928 | 22179872 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22179676 | 22179768 | 22179676 | ID=MS.gene51901.t1.exon4;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22179676 | 22179768 | 22179676 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22178379 | 22178584 | 22178379 | ID=MS.gene51901.t1.exon5;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22178379 | 22178584 | 22178379 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22178160 | 22178251 | 22178160 | ID=MS.gene51901.t1.exon6;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22178160 | 22178251 | 22178160 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22177111 | 22177325 | 22177111 | ID=MS.gene51901.t1.exon7;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22177111 | 22177325 | 22177111 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22176815 | 22177004 | 22176815 | ID=MS.gene51901.t1.exon8;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22176815 | 22177004 | 22176815 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22176597 | 22176677 | 22176597 | ID=MS.gene51901.t1.exon9;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22176597 | 22176677 | 22176597 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22175296 | 22175420 | 22175296 | ID=MS.gene51901.t1.exon10;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22175296 | 22175420 | 22175296 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22175037 | 22175165 | 22175037 | ID=MS.gene51901.t1.exon11;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22175037 | 22175165 | 22175037 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22173110 | 22173166 | 22173110 | ID=MS.gene51901.t1.exon12;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22173110 | 22173166 | 22173110 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22172914 | 22173006 | 22172914 | ID=MS.gene51901.t1.exon13;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22172914 | 22173006 | 22172914 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22172533 | 22172738 | 22172533 | ID=MS.gene51901.t1.exon14;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22172533 | 22172738 | 22172533 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22172314 | 22172405 | 22172314 | ID=MS.gene51901.t1.exon15;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22172314 | 22172405 | 22172314 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22171279 | 22171493 | 22171279 | ID=MS.gene51901.t1.exon16;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22171279 | 22171493 | 22171279 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22170989 | 22171178 | 22170989 | ID=MS.gene51901.t1.exon17;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22170989 | 22171178 | 22170989 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| chr7.4 | exon | 22170572 | 22170714 | 22170572 | ID=MS.gene51901.t1.exon18;Parent=MS.gene51901.t1 |
| chr7.4 | CDS | 22170572 | 22170714 | 22170572 | ID=cds.MS.gene51901.t1;Parent=MS.gene51901.t1 |
| Gene Sequence |
| Protein sequence |
