Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51961.t1 | XP_003598328.1 | 78.5 | 581 | 24 | 1 | 1 | 480 | 247 | 827 | 1.90E-242 | 848.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51961.t1 | G7IVE1 | 78.5 | 581 | 24 | 1 | 1 | 480 | 247 | 827 | 1.3e-242 | 848.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene51961 | 0.844019 | 9.80E-59 | -1.69E-46 |
| MS.gene053166 | MS.gene51961 | 0.809929 | 1.48E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene51961 | 0.809982 | 1.45E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene51961 | 0.811789 | 5.87E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51961.t1 | MTR_3g010350 | 88.474 | 321 | 33 | 2 | 1 | 321 | 247 | 563 | 0.0 | 570 |
| MS.gene51961.t1 | MTR_3g010350 | 88.474 | 321 | 33 | 2 | 1 | 321 | 247 | 563 | 0.0 | 570 |
| MS.gene51961.t1 | MTR_3g010350 | 88.474 | 321 | 33 | 2 | 1 | 321 | 247 | 563 | 0.0 | 569 |
| MS.gene51961.t1 | MTR_3g010350 | 93.264 | 193 | 13 | 0 | 288 | 480 | 635 | 827 | 8.75e-124 | 380 |
| MS.gene51961.t1 | MTR_3g010350 | 88.474 | 321 | 33 | 2 | 1 | 321 | 247 | 563 | 0.0 | 569 |
| MS.gene51961.t1 | MTR_4g059740 | 82.818 | 291 | 46 | 2 | 31 | 321 | 145 | 431 | 1.94e-165 | 479 |
| MS.gene51961.t1 | MTR_4g059740 | 61.538 | 78 | 24 | 2 | 288 | 365 | 503 | 574 | 8.91e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51961.t1 | AT1G73970 | 45.000 | 300 | 146 | 5 | 1 | 291 | 1 | 290 | 1.80e-66 | 224 |
| MS.gene51961.t1 | AT1G73970 | 57.386 | 176 | 63 | 3 | 279 | 453 | 383 | 547 | 2.67e-52 | 186 |
| MS.gene51961.t1 | AT1G73970 | 45.000 | 300 | 146 | 5 | 1 | 291 | 234 | 523 | 3.37e-66 | 224 |
| MS.gene51961.t1 | AT1G73970 | 45.000 | 300 | 146 | 5 | 1 | 291 | 234 | 523 | 4.22e-65 | 224 |
| MS.gene51961.t1 | AT1G73970 | 57.386 | 176 | 63 | 3 | 279 | 453 | 616 | 780 | 2.62e-51 | 186 |
| MS.gene51961.t1 | AT1G73970 | 45.000 | 300 | 146 | 5 | 1 | 291 | 234 | 523 | 7.60e-65 | 223 |
| MS.gene51961.t1 | AT1G73970 | 51.240 | 121 | 47 | 3 | 279 | 398 | 616 | 725 | 4.40e-23 | 103 |
Find 90 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTATTTCTTGAGAAAATT+TGG | 0.170840 | 3.2:+4082723 | None:intergenic |
| ATTAATTTCTTGCTTGGTTC+TGG | 0.194577 | 3.2:+4081668 | None:intergenic |
| CCTTTCGAGGGAATGGCTTC+TGG | 0.233281 | 3.2:-4081833 | MS.gene51961:CDS |
| TAGTCAGTGATTTGGTTTCT+AGG | 0.271356 | 3.2:-4083239 | MS.gene51961:CDS |
| GTAACTCTTCCAGCGCTTAT+TGG | 0.274626 | 3.2:+4080973 | None:intergenic |
| TGGTTCTTTATTTGTTTGAT+TGG | 0.281714 | 3.2:-4083479 | MS.gene51961:CDS |
| TCCTCTTTGTTTGTTTGCCT+TGG | 0.291787 | 3.2:-4083117 | MS.gene51961:CDS |
| GCGTCGAATTTGATCAATTT+CGG | 0.309489 | 3.2:-4083453 | MS.gene51961:CDS |
| CACCTTCAGTCCACCAGAAC+TGG | 0.316838 | 3.2:+4083029 | None:intergenic |
| ATATAGTGGAGAATCTTATA+TGG | 0.326678 | 3.2:-4082903 | MS.gene51961:CDS |
| TGTACGGTTGCCAGAGTATA+TGG | 0.329887 | 3.2:-4082644 | MS.gene51961:CDS |
| AAAGTGGCTATGCATCTTAA+AGG | 0.344054 | 3.2:-4082847 | MS.gene51961:CDS |
| GCAAGCCCATGTTGGTTTCA+TGG | 0.353434 | 3.2:-4081071 | MS.gene51961:CDS |
| TTTGAATTGTCACCCAGTTC+TGG | 0.378945 | 3.2:-4083042 | MS.gene51961:CDS |
| TAACTCTTCCAGCGCTTATT+GGG | 0.380557 | 3.2:+4080974 | None:intergenic |
| TTTGGAGAAAGTGGATGTTT+TGG | 0.384090 | 3.2:-4083427 | MS.gene51961:CDS |
| GGAAGCTTTAGTCAGTGATT+TGG | 0.391030 | 3.2:-4083247 | MS.gene51961:CDS |
| GCCCAACTTGATGCAACTAT+TGG | 0.393039 | 3.2:-4081184 | MS.gene51961:CDS |
| CGAAGTCTCATTGAAGATAC+TGG | 0.393924 | 3.2:-4082698 | MS.gene51961:CDS |
| CCCTCGAAAGGAGTAATATC+AGG | 0.394225 | 3.2:+4081845 | None:intergenic |
| TGAGGACTTCTGTGATTGTT+CGG | 0.402938 | 3.2:-4083272 | MS.gene51961:CDS |
| ATTCAAACACGGACTCATAA+AGG | 0.404590 | 3.2:+4083058 | None:intergenic |
| TATTGTCGCGATATTTACTT+TGG | 0.406073 | 3.2:-4082877 | MS.gene51961:CDS |
| TGGTAGAATTATTACCGATA+AGG | 0.416835 | 3.2:+4081942 | None:intergenic |
| TTACATACAAGTATCCTTAT+CGG | 0.420321 | 3.2:-4081956 | MS.gene51961:intron |
| GGAATGGCTTCTGGAGTTGT+AGG | 0.433895 | 3.2:-4081824 | MS.gene51961:CDS |
| GAGGACTTCTGTGATTGTTC+GGG | 0.435616 | 3.2:-4083271 | MS.gene51961:CDS |
| TCTAGACAATATCCTCTTCA+AGG | 0.441341 | 3.2:-4082989 | MS.gene51961:CDS |
| AAGTCTATTAATTTCTTGCT+TGG | 0.442426 | 3.2:+4081662 | None:intergenic |
| GATAGATATGCTTCGTCTAC+TGG | 0.443624 | 3.2:-4083321 | MS.gene51961:CDS |
| TTGCTTCAGTGTGTTACGTT+AGG | 0.445562 | 3.2:-4083171 | MS.gene51961:CDS |
| TATTACTCCTTTCGAGGGAA+TGG | 0.465186 | 3.2:-4081840 | MS.gene51961:CDS |
| GGAATGGTTTGAAAACGAAA+TGG | 0.465728 | 3.2:+4083137 | None:intergenic |
| CGAAGAAAATAAGAATATAG+TGG | 0.466638 | 3.2:-4082917 | MS.gene51961:CDS |
| AAAAGAAGATGAGTTGCTTA+CGG | 0.483804 | 3.2:-4082824 | MS.gene51961:CDS |
| TCCTGATATTACTCCTTTCG+AGG | 0.485069 | 3.2:-4081846 | MS.gene51961:CDS |
| GCCAATAGTTGCATCAAGTT+GGG | 0.487860 | 3.2:+4081183 | None:intergenic |
| ATAAGGATACTTGTATGTAA+TGG | 0.489233 | 3.2:+4081959 | None:intergenic |
| TGCCAATAGTTGCATCAAGT+TGG | 0.489320 | 3.2:+4081182 | None:intergenic |
| ATGGTCCAACATCTTCCTGC+TGG | 0.497914 | 3.2:-4081800 | MS.gene51961:CDS |
| AAGGAAGCAGGAGCTGTAAC+GGG | 0.508426 | 3.2:-4082970 | MS.gene51961:CDS |
| CAAGGAAGCAGGAGCTGTAA+CGG | 0.512123 | 3.2:-4082971 | MS.gene51961:CDS |
| TATACTCTGGCAACCGTACA+TGG | 0.514124 | 3.2:+4082647 | None:intergenic |
| TATAGTGGAGAATCTTATAT+GGG | 0.515982 | 3.2:-4082902 | MS.gene51961:CDS |
| AATATCCTCTTCAAGGAAGC+AGG | 0.517641 | 3.2:-4082982 | MS.gene51961:CDS |
| AATTGATAGAGTCTCATTGA+AGG | 0.521814 | 3.2:-4081995 | MS.gene51961:CDS |
| GCGAGGCAACGGAAGTATCT+CGG | 0.523422 | 3.2:+4083080 | None:intergenic |
| CAGCTCCTGCTTCCTTGAAG+AGG | 0.523439 | 3.2:+4082977 | None:intergenic |
| CAGTATCTTCAATGAGACTT+CGG | 0.528426 | 3.2:+4082699 | None:intergenic |
| AAAGTAGCAGGGCTTCCAGC+AGG | 0.532272 | 3.2:+4081785 | None:intergenic |
| AATGAAGACCCAATAAGCGC+TGG | 0.533315 | 3.2:-4080982 | MS.gene51961:CDS |
| ATAGTTGCATCAAGTTGGGC+AGG | 0.536330 | 3.2:+4081187 | None:intergenic |
| GTATATCAACAAGGAAAAGT+AGG | 0.538184 | 3.2:+4081630 | None:intergenic |
| CGAATGGTTTCCATATACTC+TGG | 0.542671 | 3.2:+4082634 | None:intergenic |
| GAATTGTCACCCAGTTCTGG+TGG | 0.544204 | 3.2:-4083039 | MS.gene51961:CDS |
| AAATGAGTTGTATTCACAAG+TGG | 0.550483 | 3.2:-4081115 | MS.gene51961:CDS |
| ACTTGCAATTACCTTGCGAA+TGG | 0.551451 | 3.2:+4082618 | None:intergenic |
| ACATTAAGATGTAGTAACTC+AGG | 0.553118 | 3.2:-4083216 | MS.gene51961:CDS |
| GGCTTCCAGCAGGAAGATGT+TGG | 0.558970 | 3.2:+4081795 | None:intergenic |
| GACTCATAAAGGCGAGGCAA+CGG | 0.560585 | 3.2:+4083069 | None:intergenic |
| TTACTTTGGACACAGGAAAG+TGG | 0.565015 | 3.2:-4082863 | MS.gene51961:CDS |
| ACCTTCAGTCCACCAGAACT+GGG | 0.567484 | 3.2:+4083030 | None:intergenic |
| ACTGGTATCATTATCTTGTG+TGG | 0.574157 | 3.2:-4082680 | MS.gene51961:CDS |
| TGAAAGTAGATGCCCTCACT+AGG | 0.574756 | 3.2:-4083296 | MS.gene51961:CDS |
| CCAGAAGCCATTCCCTCGAA+AGG | 0.581203 | 3.2:+4081833 | None:intergenic |
| GACTTCTGTGATTGTTCGGG+TGG | 0.581590 | 3.2:-4083268 | MS.gene51961:CDS |
| GGCTTCTGGAGTTGTAGGAA+TGG | 0.585269 | 3.2:-4081819 | MS.gene51961:CDS |
| CCTGATATTACTCCTTTCGA+GGG | 0.592855 | 3.2:-4081845 | MS.gene51961:CDS |
| GCGATATTTACTTTGGACAC+AGG | 0.594207 | 3.2:-4082870 | MS.gene51961:CDS |
| TAGATGCCCTCACTAGGATG+AGG | 0.596069 | 3.2:-4083290 | MS.gene51961:CDS |
| CTGCAGCCATGAAACCAACA+TGG | 0.596246 | 3.2:+4081065 | None:intergenic |
| GGCAAACAAACAAAGAGGAA+TGG | 0.597301 | 3.2:+4083121 | None:intergenic |
| ATTATCTTACCTTTGCACAA+TGG | 0.601101 | 3.2:-4081040 | MS.gene51961:CDS |
| ACCCAGTTCTGGTGGACTGA+AGG | 0.601269 | 3.2:-4083031 | MS.gene51961:CDS |
| TGTTGTCCGCAAGCCCATGT+TGG | 0.609533 | 3.2:-4081079 | MS.gene51961:CDS |
| GATTTGAAGCCATTGTGCAA+AGG | 0.612466 | 3.2:+4081031 | None:intergenic |
| GATGCATGGAAGCAGTGGCA+AGG | 0.617201 | 3.2:-4081695 | MS.gene51961:CDS |
| ACCAAGGCAAACAAACAAAG+AGG | 0.620292 | 3.2:+4083116 | None:intergenic |
| TCGCTCATGAGACTGATGCA+TGG | 0.621340 | 3.2:-4081709 | MS.gene51961:CDS |
| AGAAGTCCTCATCCTAGTGA+GGG | 0.621954 | 3.2:+4083284 | None:intergenic |
| GTATATGGAAACCATTCGCA+AGG | 0.622807 | 3.2:-4082629 | MS.gene51961:intron |
| CAGAAGTCCTCATCCTAGTG+AGG | 0.625804 | 3.2:+4083283 | None:intergenic |
| ACTATGTTCTGTGCATCTTG+TGG | 0.629928 | 3.2:+4081141 | None:intergenic |
| ATGAAACCAACATGGGCTTG+CGG | 0.640606 | 3.2:+4081073 | None:intergenic |
| CGGTTAACAATGACAAACCA+AGG | 0.648178 | 3.2:+4083100 | None:intergenic |
| AGACTGATGCATGGAAGCAG+TGG | 0.659175 | 3.2:-4081700 | MS.gene51961:CDS |
| AACACGGACTCATAAAGGCG+AGG | 0.670172 | 3.2:+4083063 | None:intergenic |
| GCCTTACTTGTATATCAACA+AGG | 0.675737 | 3.2:+4081621 | None:intergenic |
| TGCAGCCATGAAACCAACAT+GGG | 0.679137 | 3.2:+4081066 | None:intergenic |
| ACTGGGTGACAATTCAAACA+CGG | 0.721322 | 3.2:+4083047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAGTATTTAATACATA+TGG | + | chr3.2:4083034-4083053 | None:intergenic | 10.0% |
| !! | AAAGACAAATTACAAATAAA+GGG | + | chr3.2:4083008-4083027 | None:intergenic | 15.0% |
| !! | CTATGTTCTTAAATTATTAT+TGG | + | chr3.2:4083110-4083129 | None:intergenic | 15.0% |
| !! | TAAAGACAAATTACAAATAA+AGG | + | chr3.2:4083009-4083028 | None:intergenic | 15.0% |
| !! | TTATACCATATCATAATATA+GGG | - | chr3.2:4082568-4082587 | MS.gene51961:intron | 15.0% |
| !! | TTTAAAAGAAACTAGATATA+TGG | - | chr3.2:4082343-4082362 | MS.gene51961:intron | 15.0% |
| !! | TTTATACCATATCATAATAT+AGG | - | chr3.2:4082567-4082586 | MS.gene51961:intron | 15.0% |
| !!! | AATACTACAGATATAAATTT+TGG | + | chr3.2:4082220-4082239 | None:intergenic | 15.0% |
| !!! | TATCTAGTTTCTTTTAAATA+AGG | + | chr3.2:4082341-4082360 | None:intergenic | 15.0% |
| !! | AAAAATGTTGAATGATTATG+AGG | - | chr3.2:4082936-4082955 | MS.gene51961:CDS | 20.0% |
| !! | TTGTATTTCTTGAGAAAATT+TGG | + | chr3.2:4081720-4081739 | None:intergenic | 20.0% |
| !!! | AATATGTACTTAGTTGATAT+AGG | + | chr3.2:4082149-4082168 | None:intergenic | 20.0% |
| !!! | ATTGCTTAATTTTACATGAT+GGG | + | chr3.2:4082895-4082914 | None:intergenic | 20.0% |
| !!! | CATAATCATTCAACATTTTT+GGG | + | chr3.2:4082936-4082955 | None:intergenic | 20.0% |
| !!! | GTCTTCATTTTTACTTTTTT+TGG | + | chr3.2:4083447-4083466 | None:intergenic | 20.0% |
| !!! | TATTGCTTAATTTTACATGA+TGG | + | chr3.2:4082896-4082915 | None:intergenic | 20.0% |
| !!! | TCATAATCATTCAACATTTT+TGG | + | chr3.2:4082937-4082956 | None:intergenic | 20.0% |
| ! | AAGTCTATTAATTTCTTGCT+TGG | + | chr3.2:4082781-4082800 | None:intergenic | 25.0% |
| ! | AATAATTCTACCAAATACCT+TGG | - | chr3.2:4082508-4082527 | MS.gene51961:intron | 25.0% |
| ! | ATAAGGATACTTGTATGTAA+TGG | + | chr3.2:4082484-4082503 | None:intergenic | 25.0% |
| ! | ATATTTAAGCTATATAGCAC+CGG | + | chr3.2:4083189-4083208 | None:intergenic | 25.0% |
| ! | ATTAACCATTGACATATAGA+CGG | - | chr3.2:4083049-4083068 | MS.gene51961:CDS | 25.0% |
| ! | CCTTCGTTAAATAAAATTTG+GGG | - | chr3.2:4082277-4082296 | MS.gene51961:intron | 25.0% |
| ! | CGAAGAAAATAAGAATATAG+TGG | - | chr3.2:4081523-4081542 | MS.gene51961:intron | 25.0% |
| ! | CTTGAAATGAAACTTATTTG+TGG | + | chr3.2:4082190-4082209 | None:intergenic | 25.0% |
| ! | GATATCCCTATATTATGATA+TGG | + | chr3.2:4082576-4082595 | None:intergenic | 25.0% |
| ! | GCCTTCGTTAAATAAAATTT+GGG | - | chr3.2:4082276-4082295 | MS.gene51961:intron | 25.0% |
| ! | TGTAAACTTACAATAATGCA+AGG | - | chr3.2:4083213-4083232 | MS.gene51961:CDS | 25.0% |
| ! | TTACATACAAGTATCCTTAT+CGG | - | chr3.2:4082484-4082503 | MS.gene51961:intron | 25.0% |
| !! | AGAAACATTTGAGAGTTTTA+AGG | - | chr3.2:4081040-4081059 | MS.gene51961:CDS | 25.0% |
| !! | ATATAGTGGAGAATCTTATA+TGG | - | chr3.2:4081537-4081556 | MS.gene51961:intron | 25.0% |
| !! | ATATTAAAGACCAAGGTATT+TGG | + | chr3.2:4082521-4082540 | None:intergenic | 25.0% |
| !! | TAAGTTTCATTTCAAGCTTT+TGG | - | chr3.2:4082194-4082213 | MS.gene51961:intron | 25.0% |
| !! | TATAGTGGAGAATCTTATAT+GGG | - | chr3.2:4081538-4081557 | MS.gene51961:intron | 25.0% |
| !! | TGGTTCTTTATTTGTTTGAT+TGG | - | chr3.2:4080961-4080980 | MS.gene51961:CDS | 25.0% |
| !! | TTTGATCAATTTCGGATTTT+TGG | - | chr3.2:4080995-4081014 | MS.gene51961:CDS | 25.0% |
| !!! | TTCACTGCATTTATTTCTAT+GGG | - | chr3.2:4082407-4082426 | MS.gene51961:intron | 25.0% |
| AAAAGAAGATGAGTTGCTTA+CGG | - | chr3.2:4081616-4081635 | MS.gene51961:intron | 30.0% | |
| AAATGAGTTGTATTCACAAG+TGG | - | chr3.2:4083325-4083344 | MS.gene51961:CDS | 30.0% | |
| AATAAAATTTGGGGATTCTC+TGG | - | chr3.2:4082286-4082305 | MS.gene51961:intron | 30.0% | |
| AATTGATAGAGTCTCATTGA+AGG | - | chr3.2:4082445-4082464 | MS.gene51961:intron | 30.0% | |
| ACATTAAGATGTAGTAACTC+AGG | - | chr3.2:4081224-4081243 | MS.gene51961:intron | 30.0% | |
| AGATATATGGAACATCCAAA+TGG | - | chr3.2:4082356-4082375 | MS.gene51961:intron | 30.0% | |
| ATAGGATACAAGAACATAGT+TGG | + | chr3.2:4082131-4082150 | None:intergenic | 30.0% | |
| ATTAATTTCTTGCTTGGTTC+TGG | + | chr3.2:4082775-4082794 | None:intergenic | 30.0% | |
| ATTATCTTACCTTTGCACAA+TGG | - | chr3.2:4083400-4083419 | MS.gene51961:CDS | 30.0% | |
| GCAATTGAATAAATCATACC+TGG | + | chr3.2:4081920-4081939 | None:intergenic | 30.0% | |
| GGCCTTCGTTAAATAAAATT+TGG | - | chr3.2:4082275-4082294 | MS.gene51961:intron | 30.0% | |
| GTATATCAACAAGGAAAAGT+AGG | + | chr3.2:4082813-4082832 | None:intergenic | 30.0% | |
| TATTGTCGCGATATTTACTT+TGG | - | chr3.2:4081563-4081582 | MS.gene51961:intron | 30.0% | |
| TCCTTGTTGATATACAAGTA+AGG | - | chr3.2:4082818-4082837 | MS.gene51961:CDS | 30.0% | |
| TGGTAGAATTATTACCGATA+AGG | + | chr3.2:4082501-4082520 | None:intergenic | 30.0% | |
| ! | ACCAGAAAACCAAATACTTT+TGG | - | chr3.2:4082003-4082022 | MS.gene51961:CDS | 30.0% |
| !! | AAGAAGCACTTATCAGTAAA+TGG | + | chr3.2:4082982-4083001 | None:intergenic | 30.0% |
| !! | CCCCAAATTTTATTTAACGA+AGG | + | chr3.2:4082280-4082299 | None:intergenic | 30.0% |
| !! | GTTCACTGCATTTATTTCTA+TGG | - | chr3.2:4082406-4082425 | MS.gene51961:intron | 30.0% |
| !! | TCACTGCATTTATTTCTATG+GGG | - | chr3.2:4082408-4082427 | MS.gene51961:intron | 30.0% |
| !!! | ACCAAAAGTATTTGGTTTTC+TGG | + | chr3.2:4082007-4082026 | None:intergenic | 30.0% |
| AAAGTGGCTATGCATCTTAA+AGG | - | chr3.2:4081593-4081612 | MS.gene51961:intron | 35.0% | |
| ACTGGTATCATTATCTTGTG+TGG | - | chr3.2:4081760-4081779 | MS.gene51961:CDS | 35.0% | |
| ATTCAAACACGGACTCATAA+AGG | + | chr3.2:4081385-4081404 | None:intergenic | 35.0% | |
| CAGTATCTTCAATGAGACTT+CGG | + | chr3.2:4081744-4081763 | None:intergenic | 35.0% | |
| CTCGTAGGTAAAACAAAACA+CGG | + | chr3.2:4082052-4082071 | None:intergenic | 35.0% | |
| CTCTCACATATTAAAGACCA+AGG | + | chr3.2:4082528-4082547 | None:intergenic | 35.0% | |
| GAATGCAGTAAAAAGTAGCA+GGG | + | chr3.2:4082669-4082688 | None:intergenic | 35.0% | |
| GATATCCGTCTATATGTCAA+TGG | + | chr3.2:4083057-4083076 | None:intergenic | 35.0% | |
| GCCTTACTTGTATATCAACA+AGG | + | chr3.2:4082822-4082841 | None:intergenic | 35.0% | |
| GCGTCGAATTTGATCAATTT+CGG | - | chr3.2:4080987-4081006 | MS.gene51961:CDS | 35.0% | |
| GGAATGGTTTGAAAACGAAA+TGG | + | chr3.2:4081306-4081325 | None:intergenic | 35.0% | |
| GTGAATTGCTCTTTGTTCTT+TGG | - | chr3.2:4081948-4081967 | MS.gene51961:intron | 35.0% | |
| TACGGATTTCGAAAAAATCG+CGG | - | chr3.2:4081634-4081653 | MS.gene51961:CDS | 35.0% | |
| TCGTAGGTAAAACAAAACAC+GGG | + | chr3.2:4082051-4082070 | None:intergenic | 35.0% | |
| TCTAGACAATATCCTCTTCA+AGG | - | chr3.2:4081451-4081470 | MS.gene51961:intron | 35.0% | |
| TGAATGCAGTAAAAAGTAGC+AGG | + | chr3.2:4082670-4082689 | None:intergenic | 35.0% | |
| ! | AACCAAATACTTTTGGTCCA+AGG | - | chr3.2:4082010-4082029 | MS.gene51961:intron | 35.0% |
| ! | TGGAATATTTTCGCCATGTA+CGG | - | chr3.2:4081780-4081799 | MS.gene51961:CDS | 35.0% |
| ! | TTTGGAGAAAGTGGATGTTT+TGG | - | chr3.2:4081013-4081032 | MS.gene51961:CDS | 35.0% |
| ! | TTTTGAGCACTAGATACACT+AGG | - | chr3.2:4082254-4082273 | MS.gene51961:intron | 35.0% |
| !! | ATCCTTGGACCAAAAGTATT+TGG | + | chr3.2:4082015-4082034 | None:intergenic | 35.0% |
| !! | TAGTCAGTGATTTGGTTTCT+AGG | - | chr3.2:4081201-4081220 | MS.gene51961:intron | 35.0% |
| !! | TGCAAGGTTTTCTACTTTTC+AGG | - | chr3.2:4083229-4083248 | MS.gene51961:CDS | 35.0% |
| !! | TGCATTTATTTCTATGGGGA+AGG | - | chr3.2:4082412-4082431 | MS.gene51961:intron | 35.0% |
| !! | TTTCGGATTTTTGGAGAAAG+TGG | - | chr3.2:4081004-4081023 | MS.gene51961:CDS | 35.0% |
| !!! | CATTCAACATTTTTGGGTCT+TGG | + | chr3.2:4082930-4082949 | None:intergenic | 35.0% |
| !!! | CATTTGCTGTTTTCATGTCT+GGG | - | chr3.2:4081075-4081094 | MS.gene51961:CDS | 35.0% |
| !!! | TCATTTGCTGTTTTCATGTC+TGG | - | chr3.2:4081074-4081093 | MS.gene51961:CDS | 35.0% |
| AATATCCTCTTCAAGGAAGC+AGG | - | chr3.2:4081458-4081477 | MS.gene51961:intron | 40.0% | |
| ACCAAGGCAAACAAACAAAG+AGG | + | chr3.2:4081327-4081346 | None:intergenic | 40.0% | |
| ACTATGTTCTGTGCATCTTG+TGG | + | chr3.2:4083302-4083321 | None:intergenic | 40.0% | |
| ACTGGGTGACAATTCAAACA+CGG | + | chr3.2:4081396-4081415 | None:intergenic | 40.0% | |
| ACTTGCAATTACCTTGCGAA+TGG | + | chr3.2:4081825-4081844 | None:intergenic | 40.0% | |
| ACTTTGATTGAGTGTTTGCC+CGG | - | chr3.2:4082080-4082099 | MS.gene51961:intron | 40.0% | |
| CCTGATATTACTCCTTTCGA+GGG | - | chr3.2:4082595-4082614 | MS.gene51961:intron | 40.0% | |
| CGAAGTCTCATTGAAGATAC+TGG | - | chr3.2:4081742-4081761 | MS.gene51961:CDS | 40.0% | |
| CGAATGGTTTCCATATACTC+TGG | + | chr3.2:4081809-4081828 | None:intergenic | 40.0% | |
| CGGTTAACAATGACAAACCA+AGG | + | chr3.2:4081343-4081362 | None:intergenic | 40.0% | |
| CTTATGGCGACTTGACAAAT+GGG | - | chr3.2:4081894-4081913 | MS.gene51961:intron | 40.0% | |
| GATAGATATGCTTCGTCTAC+TGG | - | chr3.2:4081119-4081138 | MS.gene51961:CDS | 40.0% | |
| GCCAATAGTTGCATCAAGTT+GGG | + | chr3.2:4083260-4083279 | None:intergenic | 40.0% | |
| GCGATATTTACTTTGGACAC+AGG | - | chr3.2:4081570-4081589 | MS.gene51961:intron | 40.0% | |
| GGCAAACAAACAAAGAGGAA+TGG | + | chr3.2:4081322-4081341 | None:intergenic | 40.0% | |
| GGCAAACACTCAATCAAAGT+TGG | + | chr3.2:4082080-4082099 | None:intergenic | 40.0% | |
| GTATATGGAAACCATTCGCA+AGG | - | chr3.2:4081811-4081830 | MS.gene51961:CDS | 40.0% | |
| GTGAACTCCATACCATCTTA+TGG | - | chr3.2:4081878-4081897 | MS.gene51961:intron | 40.0% | |
| TAACTCTTCCAGCGCTTATT+GGG | + | chr3.2:4083469-4083488 | None:intergenic | 40.0% | |
| TATTACTCCTTTCGAGGGAA+TGG | - | chr3.2:4082600-4082619 | MS.gene51961:intron | 40.0% | |
| TCAAAGTTGGAATGACTCGT+AGG | + | chr3.2:4082067-4082086 | None:intergenic | 40.0% | |
| TCCTGATATTACTCCTTTCG+AGG | - | chr3.2:4082594-4082613 | MS.gene51961:intron | 40.0% | |
| TCTTATGGCGACTTGACAAA+TGG | - | chr3.2:4081893-4081912 | MS.gene51961:intron | 40.0% | |
| TGAGGACTTCTGTGATTGTT+CGG | - | chr3.2:4081168-4081187 | MS.gene51961:CDS | 40.0% | |
| TGCCAATAGTTGCATCAAGT+TGG | + | chr3.2:4083261-4083280 | None:intergenic | 40.0% | |
| TTACTTTGGACACAGGAAAG+TGG | - | chr3.2:4081577-4081596 | MS.gene51961:intron | 40.0% | |
| TTGCTTCAGTGTGTTACGTT+AGG | - | chr3.2:4081269-4081288 | MS.gene51961:intron | 40.0% | |
| TTTGAATTGTCACCCAGTTC+TGG | - | chr3.2:4081398-4081417 | MS.gene51961:intron | 40.0% | |
| TTTGTCAAGTCGCCATAAGA+TGG | + | chr3.2:4081893-4081912 | None:intergenic | 40.0% | |
| ! | GATTTGAAGCCATTGTGCAA+AGG | + | chr3.2:4083412-4083431 | None:intergenic | 40.0% |
| ! | GGAAGCTTTAGTCAGTGATT+TGG | - | chr3.2:4081193-4081212 | MS.gene51961:intron | 40.0% |
| ! | TCCTCTTTGTTTGTTTGCCT+TGG | - | chr3.2:4081323-4081342 | MS.gene51961:intron | 40.0% |
| !!! | CAACATTTTTGGGTCTTGGA+AGG | + | chr3.2:4082926-4082945 | None:intergenic | 40.0% |
| AATGAAGACCCAATAAGCGC+TGG | - | chr3.2:4083458-4083477 | MS.gene51961:CDS | 45.0% | |
| ACACCTTCAACCTGAATTGC+CGG | - | chr3.2:4083167-4083186 | MS.gene51961:CDS | 45.0% | |
| AGAAGTCCTCATCCTAGTGA+GGG | + | chr3.2:4081159-4081178 | None:intergenic | 45.0% | |
| ATCAGACATGACATTGACGC+TGG | - | chr3.2:4083074-4083093 | MS.gene51961:CDS | 45.0% | |
| ATGAAACCAACATGGGCTTG+CGG | + | chr3.2:4083370-4083389 | None:intergenic | 45.0% | |
| CAAGTCGCCATAAGATGGTA+TGG | + | chr3.2:4081888-4081907 | None:intergenic | 45.0% | |
| CCCTCGAAAGGAGTAATATC+AGG | + | chr3.2:4082598-4082617 | None:intergenic | 45.0% | |
| CTACCATGTCTCCGAATACA+GGG | + | chr3.2:4082106-4082125 | None:intergenic | 45.0% | |
| GAGGACTTCTGTGATTGTTC+GGG | - | chr3.2:4081169-4081188 | MS.gene51961:CDS | 45.0% | |
| GCCCAACTTGATGCAACTAT+TGG | - | chr3.2:4083256-4083275 | MS.gene51961:CDS | 45.0% | |
| GTAACTCTTCCAGCGCTTAT+TGG | + | chr3.2:4083470-4083489 | None:intergenic | 45.0% | |
| TATACTCTGGCAACCGTACA+TGG | + | chr3.2:4081796-4081815 | None:intergenic | 45.0% | |
| TGAAAGTAGATGCCCTCACT+AGG | - | chr3.2:4081144-4081163 | MS.gene51961:CDS | 45.0% | |
| TGCAGCCATGAAACCAACAT+GGG | + | chr3.2:4083377-4083396 | None:intergenic | 45.0% | |
| TGCAGTGAACACAGAATGAG+AGG | + | chr3.2:4082396-4082415 | None:intergenic | 45.0% | |
| TGTACGGTTGCCAGAGTATA+TGG | - | chr3.2:4081796-4081815 | MS.gene51961:CDS | 45.0% | |
| !! | ATAGTTGCATCAAGTTGGGC+AGG | + | chr3.2:4083256-4083275 | None:intergenic | 45.0% |
| !! | CTATATAGCACCGGCAATTC+AGG | + | chr3.2:4083180-4083199 | None:intergenic | 45.0% |
| !! | GCTGTTTTCATGTCTGGGAT+TGG | - | chr3.2:4081080-4081099 | MS.gene51961:CDS | 45.0% |
| !!! | GCTCGAGCTACTTTTCCATT+TGG | + | chr3.2:4082374-4082393 | None:intergenic | 45.0% |
| AACACGGACTCATAAAGGCG+AGG | + | chr3.2:4081380-4081399 | None:intergenic | 50.0% | |
| AAGGAAGCAGGAGCTGTAAC+GGG | - | chr3.2:4081470-4081489 | MS.gene51961:intron | 50.0% | |
| ACCTTCAGTCCACCAGAACT+GGG | + | chr3.2:4081413-4081432 | None:intergenic | 50.0% | |
| AGACTGATGCATGGAAGCAG+TGG | - | chr3.2:4082740-4082759 | MS.gene51961:CDS | 50.0% | |
| ATGACATTGACGCTGGCAAG+TGG | - | chr3.2:4083081-4083100 | MS.gene51961:CDS | 50.0% | |
| ATGGTCCAACATCTTCCTGC+TGG | - | chr3.2:4082640-4082659 | MS.gene51961:CDS | 50.0% | |
| CAAGGAAGCAGGAGCTGTAA+CGG | - | chr3.2:4081469-4081488 | MS.gene51961:intron | 50.0% | |
| CAGAAGTCCTCATCCTAGTG+AGG | + | chr3.2:4081160-4081179 | None:intergenic | 50.0% | |
| CTGCAGCCATGAAACCAACA+TGG | + | chr3.2:4083378-4083397 | None:intergenic | 50.0% | |
| GACTCATAAAGGCGAGGCAA+CGG | + | chr3.2:4081374-4081393 | None:intergenic | 50.0% | |
| GACTTCTGTGATTGTTCGGG+TGG | - | chr3.2:4081172-4081191 | MS.gene51961:CDS | 50.0% | |
| GCTACCATGTCTCCGAATAC+AGG | + | chr3.2:4082107-4082126 | None:intergenic | 50.0% | |
| GGCAGTTTGCACTTCATCCT+TGG | + | chr3.2:4082030-4082049 | None:intergenic | 50.0% | |
| TAGATGCCCTCACTAGGATG+AGG | - | chr3.2:4081150-4081169 | MS.gene51961:CDS | 50.0% | |
| TCGCTCATGAGACTGATGCA+TGG | - | chr3.2:4082731-4082750 | MS.gene51961:CDS | 50.0% | |
| ! | GAATTGTCACCCAGTTCTGG+TGG | - | chr3.2:4081401-4081420 | MS.gene51961:intron | 50.0% |
| !! | CGCGGATTCTGCTTTTCTCA+TGG | - | chr3.2:4081652-4081671 | MS.gene51961:CDS | 50.0% |
| !! | GCAAGCCCATGTTGGTTTCA+TGG | - | chr3.2:4083369-4083388 | MS.gene51961:CDS | 50.0% |
| !! | GGAATGGCTTCTGGAGTTGT+AGG | - | chr3.2:4082616-4082635 | MS.gene51961:intron | 50.0% |
| !! | GGCTTCTGGAGTTGTAGGAA+TGG | - | chr3.2:4082621-4082640 | MS.gene51961:intron | 50.0% |
| AAAGTAGCAGGGCTTCCAGC+AGG | + | chr3.2:4082658-4082677 | None:intergenic | 55.0% | |
| ATGTCTCCGAATACAGGGCC+GGG | + | chr3.2:4082101-4082120 | None:intergenic | 55.0% | |
| CACCTTCAGTCCACCAGAAC+TGG | + | chr3.2:4081414-4081433 | None:intergenic | 55.0% | |
| CAGCTCCTGCTTCCTTGAAG+AGG | + | chr3.2:4081466-4081485 | None:intergenic | 55.0% | |
| CATGTCTCCGAATACAGGGC+CGG | + | chr3.2:4082102-4082121 | None:intergenic | 55.0% | |
| CCAGAAGCCATTCCCTCGAA+AGG | + | chr3.2:4082610-4082629 | None:intergenic | 55.0% | |
| CCTTTCGAGGGAATGGCTTC+TGG | - | chr3.2:4082607-4082626 | MS.gene51961:intron | 55.0% | |
| GATGCATGGAAGCAGTGGCA+AGG | - | chr3.2:4082745-4082764 | MS.gene51961:CDS | 55.0% | |
| GGCTTCCAGCAGGAAGATGT+TGG | + | chr3.2:4082648-4082667 | None:intergenic | 55.0% | |
| TGTTGTCCGCAAGCCCATGT+TGG | - | chr3.2:4083361-4083380 | MS.gene51961:CDS | 55.0% | |
| TGTTTGCCCGGCCCTGTATT+CGG | - | chr3.2:4082092-4082111 | MS.gene51961:intron | 55.0% | |
| !! | ACCCAGTTCTGGTGGACTGA+AGG | - | chr3.2:4081409-4081428 | MS.gene51961:intron | 55.0% |
| !! | GCACCGGCAATTCAGGTTGA+AGG | + | chr3.2:4083173-4083192 | None:intergenic | 55.0% |
| !! | GCGAGGCAACGGAAGTATCT+CGG | + | chr3.2:4081363-4081382 | None:intergenic | 55.0% |
| CGGCCCTGTATTCGGAGACA+TGG | - | chr3.2:4082100-4082119 | MS.gene51961:intron | 60.0% | |
| GGCGACTTGACAAATGGGCC+AGG | - | chr3.2:4081899-4081918 | MS.gene51961:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 4080960 | 4083502 | 4080960 | ID=MS.gene51961 |
| chr3.2 | mRNA | 4080960 | 4083502 | 4080960 | ID=MS.gene51961.t1;Parent=MS.gene51961 |
| chr3.2 | exon | 4082630 | 4083502 | 4082630 | ID=MS.gene51961.t1.exon1;Parent=MS.gene51961.t1 |
| chr3.2 | CDS | 4082630 | 4083502 | 4082630 | ID=cds.MS.gene51961.t1;Parent=MS.gene51961.t1 |
| chr3.2 | exon | 4081957 | 4082028 | 4081957 | ID=MS.gene51961.t1.exon2;Parent=MS.gene51961.t1 |
| chr3.2 | CDS | 4081957 | 4082028 | 4081957 | ID=cds.MS.gene51961.t1;Parent=MS.gene51961.t1 |
| chr3.2 | exon | 4081628 | 4081873 | 4081628 | ID=MS.gene51961.t1.exon3;Parent=MS.gene51961.t1 |
| chr3.2 | CDS | 4081628 | 4081873 | 4081628 | ID=cds.MS.gene51961.t1;Parent=MS.gene51961.t1 |
| chr3.2 | exon | 4080960 | 4081211 | 4080960 | ID=MS.gene51961.t1.exon4;Parent=MS.gene51961.t1 |
| chr3.2 | CDS | 4080960 | 4081211 | 4080960 | ID=cds.MS.gene51961.t1;Parent=MS.gene51961.t1 |
| Gene Sequence |
| Protein sequence |
