Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52093.t1 | XP_013456507.1 | 95.8 | 286 | 10 | 1 | 1 | 286 | 1 | 284 | 2.20E-129 | 471.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52093.t1 | A0A072UNB3 | 95.8 | 286 | 10 | 1 | 1 | 286 | 1 | 284 | 1.6e-129 | 471.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98743 | MS.gene52093 | PPI |
| MS.gene52093 | MS.gene032192 | PPI |
| MS.gene051997 | MS.gene52093 | PPI |
| MS.gene85263 | MS.gene52093 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52093.t1 | MTR_4g074120 | 97.552 | 286 | 5 | 2 | 1 | 286 | 1 | 284 | 0.0 | 576 |
| MS.gene52093.t1 | MTR_4g074120 | 96.863 | 255 | 6 | 2 | 1 | 255 | 1 | 253 | 0.0 | 510 |
| MS.gene52093.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.84e-125 | 359 |
| MS.gene52093.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.26e-124 | 359 |
| MS.gene52093.t1 | MTR_1g035700 | 61.149 | 296 | 100 | 5 | 1 | 286 | 1 | 291 | 1.36e-122 | 352 |
| MS.gene52093.t1 | MTR_2g099155 | 44.541 | 229 | 109 | 4 | 72 | 283 | 6 | 233 | 8.80e-59 | 188 |
| MS.gene52093.t1 | MTR_2g099155 | 43.096 | 239 | 108 | 5 | 72 | 283 | 6 | 243 | 4.15e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52093.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 6.28e-74 | 227 |
| MS.gene52093.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 8.79e-74 | 227 |
| MS.gene52093.t1 | AT1G60670 | 44.922 | 256 | 109 | 6 | 37 | 286 | 1 | 230 | 1.44e-70 | 218 |
| MS.gene52093.t1 | AT1G10820 | 45.418 | 251 | 124 | 5 | 37 | 286 | 1 | 239 | 5.66e-66 | 207 |
| MS.gene52093.t1 | AT1G10820 | 47.534 | 223 | 103 | 3 | 64 | 286 | 5 | 213 | 1.24e-64 | 202 |
| MS.gene52093.t1 | AT3G07565 | 42.922 | 219 | 118 | 2 | 68 | 283 | 37 | 251 | 2.46e-60 | 192 |
| MS.gene52093.t1 | AT3G07565 | 43.379 | 219 | 116 | 3 | 68 | 283 | 37 | 250 | 9.95e-60 | 191 |
| MS.gene52093.t1 | AT3G07565 | 41.228 | 228 | 118 | 3 | 68 | 283 | 37 | 260 | 2.26e-57 | 185 |
| MS.gene52093.t1 | AT1G60670 | 42.358 | 229 | 105 | 6 | 37 | 259 | 1 | 208 | 4.78e-57 | 182 |
| MS.gene52093.t1 | AT1G68160 | 42.446 | 278 | 137 | 3 | 1 | 278 | 3 | 257 | 1.23e-49 | 166 |
| MS.gene52093.t1 | AT1G60670 | 42.157 | 204 | 91 | 6 | 37 | 234 | 1 | 183 | 2.10e-48 | 160 |
| MS.gene52093.t1 | AT3G07565 | 40.945 | 127 | 67 | 3 | 68 | 191 | 37 | 158 | 1.52e-25 | 100 |
| MS.gene52093.t1 | AT2G43470 | 30.973 | 226 | 116 | 10 | 61 | 277 | 1 | 195 | 8.06e-17 | 77.8 |
Find 67 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCAATGGGTAATTATTT+TGG | 0.089118 | 4.1:-29758332 | MS.gene52093:CDS |
| CTTCTTGTTGATTCAGTTCC+AGG | 0.161351 | 4.1:-29758197 | MS.gene52093:CDS |
| TTTGGGTTTAGTAGTTCTTC+TGG | 0.191137 | 4.1:-29758314 | MS.gene52093:CDS |
| TCTTGCAAGATCCTCGTTAA+TGG | 0.242729 | 4.1:+29754655 | None:intergenic |
| CACCTTGTACGTCGATAAAT+TGG | 0.260162 | 4.1:+29755439 | None:intergenic |
| CTGCTCCATGAGTTGCTTCA+TGG | 0.279827 | 4.1:+29755490 | None:intergenic |
| CTTCATGATACTTGGTTCAT+TGG | 0.301764 | 4.1:+29757168 | None:intergenic |
| CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 4.1:+29754678 | None:intergenic |
| TTTCCCAAACTGTGTTCATC+TGG | 0.342616 | 4.1:+29756345 | None:intergenic |
| TTCTCACATGTCACGCGTTA+TGG | 0.353724 | 4.1:-29755769 | MS.gene52093:CDS |
| GAACTTACCTAAGTTCTATT+AGG | 0.367237 | 4.1:+29754623 | None:intergenic |
| GAAACCAGATGAACACAGTT+TGG | 0.374047 | 4.1:-29756349 | MS.gene52093:CDS |
| TGCTCCATGAGTTGCTTCAT+GGG | 0.376053 | 4.1:+29755491 | None:intergenic |
| TCTTCTGGGATGGTATATTC+TGG | 0.384527 | 4.1:-29758299 | MS.gene52093:CDS |
| GGTGGTGGTGGTAATTCAGC+TGG | 0.385981 | 4.1:-29758230 | MS.gene52093:CDS |
| TTGGGTTTAGTAGTTCTTCT+GGG | 0.387168 | 4.1:-29758313 | MS.gene52093:CDS |
| AGCACAGTCAAATTTGCATT+CGG | 0.395808 | 4.1:-29755817 | MS.gene52093:CDS |
| CTGTTCGCGATGTTGCTTTG+AGG | 0.408201 | 4.1:-29757111 | MS.gene52093:CDS |
| TTCTTGTTGATTCAGTTCCA+GGG | 0.434162 | 4.1:-29758196 | MS.gene52093:CDS |
| TTGATGTACTTCATGATACT+TGG | 0.436387 | 4.1:+29757160 | None:intergenic |
| AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 4.1:+29754662 | None:intergenic |
| ACCCAAAATAATTACCCATT+GGG | 0.452792 | 4.1:+29758330 | None:intergenic |
| GAGAATATGACCCCATGCTT+GGG | 0.454600 | 4.1:+29755787 | None:intergenic |
| AAACCAGATGAACACAGTTT+GGG | 0.464720 | 4.1:-29756348 | MS.gene52093:CDS |
| AACCCAAAATAATTACCCAT+TGG | 0.481651 | 4.1:+29758329 | None:intergenic |
| GTTTAGTAGTTCTTCTGGGA+TGG | 0.481723 | 4.1:-29758309 | MS.gene52093:CDS |
| GCGATGTTGCTTTGAGGTGT+AGG | 0.484163 | 4.1:-29757105 | MS.gene52093:CDS |
| GTGTATGTTCAGGAATTTGT+GGG | 0.484238 | 4.1:-29755514 | MS.gene52093:intron |
| TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 4.1:+29754668 | None:intergenic |
| ATCCACATACTCGTTTAGAA+TGG | 0.498102 | 4.1:+29754802 | None:intergenic |
| GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 4.1:+29754692 | None:intergenic |
| TGAGAATATGACCCCATGCT+TGG | 0.517631 | 4.1:+29755786 | None:intergenic |
| GTAAGTCAAGGTGGTGGTGG+TGG | 0.519479 | 4.1:-29758242 | MS.gene52093:CDS |
| TCTTGATGAACAGTACAGAT+TGG | 0.528915 | 4.1:-29758138 | MS.gene52093:CDS |
| GTTGTAAGTCAAGGTGGTGG+TGG | 0.530328 | 4.1:-29758245 | MS.gene52093:CDS |
| GTGGTGGTGGTAATTCAGCT+GGG | 0.550789 | 4.1:-29758229 | MS.gene52093:CDS |
| CCTGTGTCATGCTTAAGCCC+TGG | 0.552020 | 4.1:+29758179 | None:intergenic |
| ATGTCAGAGATGGTCCCAAT+GGG | 0.554489 | 4.1:-29758344 | MS.gene52093:CDS |
| TGTGTATGTTCAGGAATTTG+TGG | 0.554772 | 4.1:-29755515 | MS.gene52093:intron |
| TGAACAGTACAGATTGGAAG+AGG | 0.560367 | 4.1:-29758132 | MS.gene52093:CDS |
| ACACAGGGTTGGCTGTTGAA+TGG | 0.567227 | 4.1:-29758163 | MS.gene52093:CDS |
| TGGGCCCATGAAGCAACTCA+TGG | 0.567392 | 4.1:-29755495 | MS.gene52093:CDS |
| CACCACCTTGACTTACAACA+TGG | 0.569366 | 4.1:+29758249 | None:intergenic |
| CATGTCAGAGATGGTCCCAA+TGG | 0.570192 | 4.1:-29758345 | MS.gene52093:CDS |
| CCAGGGCTTAAGCATGACAC+AGG | 0.572689 | 4.1:-29758179 | MS.gene52093:CDS |
| GCTTCTTCAGGATAAGTCGT+TGG | 0.579374 | 4.1:-29755847 | MS.gene52093:intron |
| AACAACCATGTTGTAAGTCA+AGG | 0.581264 | 4.1:-29758254 | MS.gene52093:CDS |
| TGTGCCTTGTGTGGCAAAAG+AGG | 0.582507 | 4.1:+29754834 | None:intergenic |
| GAATAATAGCATGTCAGAGA+TGG | 0.583965 | 4.1:-29758354 | MS.gene52093:CDS |
| TACCAATTTATCGACGTACA+AGG | 0.592537 | 4.1:-29755441 | MS.gene52093:intron |
| AGTCAACGGACACTATATGA+TGG | 0.610616 | 4.1:-29755741 | MS.gene52093:intron |
| GCTTAAGCATGACACAGGGT+TGG | 0.613167 | 4.1:-29758174 | MS.gene52093:CDS |
| TGCAGCATGAGTGAGATGCC+TGG | 0.617604 | 4.1:-29754710 | MS.gene52093:intron |
| AATTAATATTGTGCCTTGTG+TGG | 0.630893 | 4.1:+29754825 | None:intergenic |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.642936 | 4.1:-29757102 | MS.gene52093:CDS |
| AGAATATGACCCCATGCTTG+GGG | 0.646474 | 4.1:+29755788 | None:intergenic |
| TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 4.1:+29754671 | None:intergenic |
| TGGAGGCAGAGTCAAACAGA+GGG | 0.653189 | 4.1:-29758442 | MS.gene52093:CDS |
| ATGGAGGCAGAGTCAAACAG+AGG | 0.667685 | 4.1:-29758443 | MS.gene52093:CDS |
| GAATATGACCCCATGCTTGG+GGG | 0.678829 | 4.1:+29755789 | None:intergenic |
| GAACAGTACAGATTGGAAGA+GGG | 0.679393 | 4.1:-29758131 | MS.gene52093:CDS |
| CAGGGCTTAAGCATGACACA+GGG | 0.681848 | 4.1:-29758178 | MS.gene52093:CDS |
| AACCATGTTGTAAGTCAAGG+TGG | 0.691347 | 4.1:-29758251 | MS.gene52093:CDS |
| GCGTTATGGAACAAAGTCAA+CGG | 0.697757 | 4.1:-29755755 | MS.gene52093:CDS |
| ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 4.1:-29754666 | MS.gene52093:CDS |
| CATGTTGTAAGTCAAGGTGG+TGG | 0.710164 | 4.1:-29758248 | MS.gene52093:CDS |
| CATGCAATATCATTTCAGCA+CGG | 0.730065 | 4.1:-29758383 | MS.gene52093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTTAATTTTTTA+TGG | + | chr4.1:29756913-29756932 | None:intergenic | 0.0% |
| !! | AATATGATCATTAATTTATA+TGG | + | chr4.1:29757932-29757951 | None:intergenic | 10.0% |
| !! | ATTAAAAAAACTTAAGAAAA+TGG | + | chr4.1:29757368-29757387 | None:intergenic | 10.0% |
| !! | TTATTTATTTATTGCTAATT+TGG | - | chr4.1:29755003-29755022 | MS.gene52093:intron | 10.0% |
| !!! | ATAAATTTCCAATTTTAAAT+GGG | + | chr4.1:29756573-29756592 | None:intergenic | 10.0% |
| !! | ATAACAATCATGAAATTAAA+AGG | + | chr4.1:29755868-29755887 | None:intergenic | 15.0% |
| !! | CTTTAATATGTTATAAGTTA+TGG | - | chr4.1:29756304-29756323 | MS.gene52093:intron | 15.0% |
| !! | TATAATGAAAGATGAAAATT+TGG | + | chr4.1:29758015-29758034 | None:intergenic | 15.0% |
| !! | TTAAAATTGGAAATTTATCA+GGG | - | chr4.1:29756575-29756594 | MS.gene52093:intron | 15.0% |
| !!! | GATAAATTTCCAATTTTAAA+TGG | + | chr4.1:29756574-29756593 | None:intergenic | 15.0% |
| !!! | TAAATTTCCAATTTTAAATG+GGG | + | chr4.1:29756572-29756591 | None:intergenic | 15.0% |
| !!! | TAAGTTGAACAATAAATTTA+AGG | - | chr4.1:29755235-29755254 | MS.gene52093:intron | 15.0% |
| !!! | TTATTTTCTTAGTTTATGTT+TGG | + | chr4.1:29755385-29755404 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGGAAATTTATC+AGG | - | chr4.1:29756574-29756593 | MS.gene52093:intron | 15.0% |
| !! | AGACACACTTAAATTATTAT+CGG | + | chr4.1:29755079-29755098 | None:intergenic | 20.0% |
| !! | ATAAAAACAAATGACTTACT+TGG | + | chr4.1:29754974-29754993 | None:intergenic | 20.0% |
| !! | ATAATTGCAACATATTAAAG+TGG | + | chr4.1:29756197-29756216 | None:intergenic | 20.0% |
| !! | ATGAAACATAACCTTTAAAT+AGG | + | chr4.1:29756490-29756509 | None:intergenic | 20.0% |
| !! | ATTTGTAACAACTAATTTAG+TGG | - | chr4.1:29757752-29757771 | MS.gene52093:intron | 20.0% |
| !! | CTTGTATTCAATAATTTGAT+TGG | - | chr4.1:29755712-29755731 | MS.gene52093:intron | 20.0% |
| !! | TAATGAAGTTTACTTGTATT+TGG | - | chr4.1:29758298-29758317 | MS.gene52093:CDS | 20.0% |
| !! | TATTTAATGAAATGTGGAAT+TGG | + | chr4.1:29757537-29757556 | None:intergenic | 20.0% |
| !! | TTCAACTTACATTTATATGA+AGG | + | chr4.1:29755224-29755243 | None:intergenic | 20.0% |
| !! | TTGAATCAATTAATGTCTTT+AGG | - | chr4.1:29757166-29757185 | MS.gene52093:CDS | 20.0% |
| !! | TTGATTCAATATATCAAAAC+TGG | + | chr4.1:29757155-29757174 | None:intergenic | 20.0% |
| !!! | AAATTTCCAATTTTAAATGG+GGG | + | chr4.1:29756571-29756590 | None:intergenic | 20.0% |
| !!! | AAGAACCTAAATTATTTTCA+TGG | + | chr4.1:29755524-29755543 | None:intergenic | 20.0% |
| !!! | AGAACCTAAATTATTTTCAT+GGG | + | chr4.1:29755523-29755542 | None:intergenic | 20.0% |
| !!! | AGCTTTGTTTTTGTAAATAT+TGG | - | chr4.1:29757682-29757701 | MS.gene52093:intron | 20.0% |
| !!! | CAGAAAAGTATGTAAAATTT+TGG | - | chr4.1:29756764-29756783 | MS.gene52093:intron | 20.0% |
| !!! | TTTAGAATTCAAATTTGTAC+TGG | + | chr4.1:29756164-29756183 | None:intergenic | 20.0% |
| ! | AATGAAGAAAATAAAGCTGA+TGG | - | chr4.1:29756400-29756419 | MS.gene52093:intron | 25.0% |
| ! | AATTTGAACATTTCCTAAAC+AGG | + | chr4.1:29757841-29757860 | None:intergenic | 25.0% |
| ! | CAACTTGTAATCCTATTTAA+AGG | - | chr4.1:29756476-29756495 | MS.gene52093:intron | 25.0% |
| ! | CACAAGTATTTAATGAAATG+TGG | + | chr4.1:29757543-29757562 | None:intergenic | 25.0% |
| ! | CTTTCCCATGAAAATAATTT+AGG | - | chr4.1:29755516-29755535 | MS.gene52093:intron | 25.0% |
| ! | GAAAGATATCATATTCACAT+TGG | - | chr4.1:29757874-29757893 | MS.gene52093:intron | 25.0% |
| ! | TATCTAAGTTCTTTCAGTTA+TGG | - | chr4.1:29758118-29758137 | MS.gene52093:intron | 25.0% |
| ! | TATTGTCTGTCTAATTACTA+TGG | - | chr4.1:29757948-29757967 | MS.gene52093:intron | 25.0% |
| ! | TTAAATACTTGTGTATGTTC+AGG | - | chr4.1:29757550-29757569 | MS.gene52093:intron | 25.0% |
| ! | TTGTGGATAATATGTTATAC+TGG | + | chr4.1:29756602-29756621 | None:intergenic | 25.0% |
| ! | TTTCATAGATCTTAAAACTG+AGG | + | chr4.1:29756937-29756956 | None:intergenic | 25.0% |
| !! | AATTTTAAATGGGGGAAAAA+AGG | + | chr4.1:29756563-29756582 | None:intergenic | 25.0% |
| !! | AGGCTAAAATTCAATTTTAG+CGG | - | chr4.1:29755255-29755274 | MS.gene52093:intron | 25.0% |
| !!! | ATGCTTTAGAAACTATAAAG+TGG | + | chr4.1:29756253-29756272 | None:intergenic | 25.0% |
| !!! | TATGAAGTATTGCATTGAAA+TGG | - | chr4.1:29758036-29758055 | MS.gene52093:intron | 25.0% |
| !!! | TGTGCTAAATTTGTTTTTCA+TGG | - | chr4.1:29755783-29755802 | MS.gene52093:CDS | 25.0% |
| !!! | TTTTTTCCCCCATTTAAAAT+TGG | - | chr4.1:29756562-29756581 | MS.gene52093:intron | 25.0% |
| AAAACTGGAATCCCATTTAT+GGG | + | chr4.1:29757140-29757159 | None:intergenic | 30.0% | |
| AACAAAGCTGAAACATATGA+TGG | + | chr4.1:29757671-29757690 | None:intergenic | 30.0% | |
| AACCCAAAATAATTACCCAT+TGG | + | chr4.1:29754748-29754767 | None:intergenic | 30.0% | |
| AACCTAGTTAACTACTGATA+TGG | + | chr4.1:29758066-29758085 | None:intergenic | 30.0% | |
| AATTAATATTGTGCCTTGTG+TGG | + | chr4.1:29758252-29758271 | None:intergenic | 30.0% | |
| ACATCAGGAAAATTGTTGAA+AGG | + | chr4.1:29756016-29756035 | None:intergenic | 30.0% | |
| ACCCAAAATAATTACCCATT+GGG | + | chr4.1:29754747-29754766 | None:intergenic | 30.0% | |
| ACCTAGTTAACTACTGATAT+GGG | + | chr4.1:29758065-29758084 | None:intergenic | 30.0% | |
| AGATGTTCCAAGTTTGTAAA+AGG | + | chr4.1:29757727-29757746 | None:intergenic | 30.0% | |
| AGCATTAAACTATGTACATC+AGG | + | chr4.1:29756031-29756050 | None:intergenic | 30.0% | |
| ATAAGTTATGGTGATATCAG+TGG | - | chr4.1:29756316-29756335 | MS.gene52093:intron | 30.0% | |
| CAAAGAAAACAATACTTGGT+AGG | + | chr4.1:29755692-29755711 | None:intergenic | 30.0% | |
| CAAGCAAAGAAAACAATACT+TGG | + | chr4.1:29755696-29755715 | None:intergenic | 30.0% | |
| CAGAACCAACTTAAAACATT+GGG | + | chr4.1:29756874-29756893 | None:intergenic | 30.0% | |
| CTCTGCAAAAATGGTTTAAA+CGG | + | chr4.1:29756696-29756715 | None:intergenic | 30.0% | |
| GCATATTCAAGTGACTTTAA+TGG | + | chr4.1:29756088-29756107 | None:intergenic | 30.0% | |
| TCAGAACCAACTTAAAACAT+TGG | + | chr4.1:29756875-29756894 | None:intergenic | 30.0% | |
| TGAAAGTTGAATATGCATAG+TGG | - | chr4.1:29756122-29756141 | MS.gene52093:intron | 30.0% | |
| TGCAAATTGAATATGCATAG+TGG | - | chr4.1:29756222-29756241 | MS.gene52093:intron | 30.0% | |
| TGGCTAAGTATAAATACATG+CGG | - | chr4.1:29757772-29757791 | MS.gene52093:intron | 30.0% | |
| TTATGTTGCATCCCATAAAT+GGG | - | chr4.1:29757126-29757145 | MS.gene52093:CDS | 30.0% | |
| TTGATGTACTTCATGATACT+TGG | + | chr4.1:29755917-29755936 | None:intergenic | 30.0% | |
| ! | AATTTTACCTCCTTAGAAAG+TGG | - | chr4.1:29755357-29755376 | MS.gene52093:intron | 30.0% |
| ! | ATTTAGGTTCTTTGAATCTG+TGG | - | chr4.1:29755532-29755551 | MS.gene52093:intron | 30.0% |
| ! | TCCCAATGGGTAATTATTTT+GGG | - | chr4.1:29754743-29754762 | MS.gene52093:intron | 30.0% |
| ! | TTTTCGTCCTTTTACAAACT+TGG | - | chr4.1:29757717-29757736 | MS.gene52093:intron | 30.0% |
| !! | GTGCACAATTTTCATTTTTG+TGG | + | chr4.1:29756619-29756638 | None:intergenic | 30.0% |
| !! | TGGTAGGTAGTATTTTTAAG+TGG | + | chr4.1:29755676-29755695 | None:intergenic | 30.0% |
| !! | TTCACTTCTACACTTGTTTT+CGG | - | chr4.1:29756658-29756677 | MS.gene52093:intron | 30.0% |
| !!! | GGTAGGTAGTATTTTTAAGT+GGG | + | chr4.1:29755675-29755694 | None:intergenic | 30.0% |
| AAACCAGATGAACACAGTTT+GGG | - | chr4.1:29756726-29756745 | MS.gene52093:intron | 35.0% | |
| AACAACCATGTTGTAAGTCA+AGG | - | chr4.1:29754820-29754839 | MS.gene52093:CDS | 35.0% | |
| AACCAACTTAAAACATTGGG+AGG | + | chr4.1:29756871-29756890 | None:intergenic | 35.0% | |
| AAGCTGATGGAACTTTCAAT+TGG | - | chr4.1:29756413-29756432 | MS.gene52093:intron | 35.0% | |
| AATTTGTACTGGACTCAAAG+TGG | + | chr4.1:29756153-29756172 | None:intergenic | 35.0% | |
| ACAGAAAATAAGTTGCCATG+TGG | + | chr4.1:29755493-29755512 | None:intergenic | 35.0% | |
| AGCACAGTCAAATTTGCATT+CGG | - | chr4.1:29757257-29757276 | MS.gene52093:intron | 35.0% | |
| AGCTGATGGAACTTTCAATT+GGG | - | chr4.1:29756414-29756433 | MS.gene52093:intron | 35.0% | |
| ATCCACATACTCGTTTAGAA+TGG | + | chr4.1:29758275-29758294 | None:intergenic | 35.0% | |
| ATCCACTAGACAATCTATAG+AGG | + | chr4.1:29757805-29757824 | None:intergenic | 35.0% | |
| ATGGTGATATCAGTGGTTAA+AGG | - | chr4.1:29756323-29756342 | MS.gene52093:intron | 35.0% | |
| CAAAACTGGAATCCCATTTA+TGG | + | chr4.1:29757141-29757160 | None:intergenic | 35.0% | |
| CATGCAATATCATTTCAGCA+CGG | - | chr4.1:29754691-29754710 | MS.gene52093:CDS | 35.0% | |
| CTTATGTTGCATCCCATAAA+TGG | - | chr4.1:29757125-29757144 | MS.gene52093:CDS | 35.0% | |
| CTTCATGATACTTGGTTCAT+TGG | + | chr4.1:29755909-29755928 | None:intergenic | 35.0% | |
| GAATAATAGCATGTCAGAGA+TGG | - | chr4.1:29754720-29754739 | MS.gene52093:intron | 35.0% | |
| GAATTGATTGCAAAACAAGG+TGG | + | chr4.1:29755653-29755672 | None:intergenic | 35.0% | |
| GTGTATGTTCAGGAATTTGT+GGG | - | chr4.1:29757560-29757579 | MS.gene52093:intron | 35.0% | |
| GTGTTTATTGAAGAGTTGTC+TGG | - | chr4.1:29756821-29756840 | MS.gene52093:intron | 35.0% | |
| TAAAACATTGGGAGGAGAAT+CGG | + | chr4.1:29756863-29756882 | None:intergenic | 35.0% | |
| TACCAATTTATCGACGTACA+AGG | - | chr4.1:29757633-29757652 | MS.gene52093:intron | 35.0% | |
| TAGTCCACAGATAAAAAGAC+AGG | + | chr4.1:29755607-29755626 | None:intergenic | 35.0% | |
| TCAAGCTCTCATTATGTTTG+CGG | - | chr4.1:29757395-29757414 | MS.gene52093:intron | 35.0% | |
| TCCCATATCAGTAGTTAACT+AGG | - | chr4.1:29758061-29758080 | MS.gene52093:intron | 35.0% | |
| TCTTGATGAACAGTACAGAT+TGG | - | chr4.1:29754936-29754955 | MS.gene52093:intron | 35.0% | |
| TGGGAATTGATTGCAAAACA+AGG | + | chr4.1:29755656-29755675 | None:intergenic | 35.0% | |
| TGTGTATGTTCAGGAATTTG+TGG | - | chr4.1:29757559-29757578 | MS.gene52093:intron | 35.0% | |
| TGTTTGCGGCTACATTATTT+CGG | - | chr4.1:29757409-29757428 | MS.gene52093:intron | 35.0% | |
| TTAGGTTTCGGTTGTTATCA+CGG | - | chr4.1:29756353-29756372 | MS.gene52093:CDS | 35.0% | |
| TTATCACATTACTGGACTCA+TGG | - | chr4.1:29757897-29757916 | MS.gene52093:intron | 35.0% | |
| TTCCATTCTAAACGAGTATG+TGG | - | chr4.1:29758270-29758289 | MS.gene52093:CDS | 35.0% | |
| TTGGGTTTAGTAGTTCTTCT+GGG | - | chr4.1:29754761-29754780 | MS.gene52093:intron | 35.0% | |
| ! | ATGTTTGGTTCCACTTTCTA+AGG | + | chr4.1:29755370-29755389 | None:intergenic | 35.0% |
| ! | CACATTGGTTATCACATTAC+TGG | - | chr4.1:29757889-29757908 | MS.gene52093:intron | 35.0% |
| ! | CTTTCAATTGGGCTAGAATA+TGG | - | chr4.1:29756425-29756444 | MS.gene52093:intron | 35.0% |
| ! | GATTGGTTCTTATCCTGTTT+AGG | - | chr4.1:29757825-29757844 | MS.gene52093:intron | 35.0% |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4.1:29755349-29755368 | None:intergenic | 35.0% |
| ! | GTCCCAATGGGTAATTATTT+TGG | - | chr4.1:29754742-29754761 | MS.gene52093:intron | 35.0% |
| ! | TAGATTGTCTAGTGGATGAT+TGG | - | chr4.1:29757808-29757827 | MS.gene52093:intron | 35.0% |
| ! | TTTGGGTTTAGTAGTTCTTC+TGG | - | chr4.1:29754760-29754779 | MS.gene52093:intron | 35.0% |
| !! | CTTCATTTTTCTGCAATTGC+TGG | + | chr4.1:29756387-29756406 | None:intergenic | 35.0% |
| !! | GAAGCATGACTTTAGAATAC+TGG | + | chr4.1:29757212-29757231 | None:intergenic | 35.0% |
| !! | TTCTAAAGTCATGCTTCTTC+AGG | - | chr4.1:29757215-29757234 | MS.gene52093:intron | 35.0% |
| !! | TTCTTGTTGATTCAGTTCCA+GGG | - | chr4.1:29754878-29754897 | MS.gene52093:intron | 35.0% |
| !!! | AAAGGCAAGGTTTTAGGTTT+CGG | - | chr4.1:29756341-29756360 | MS.gene52093:CDS | 35.0% |
| AAAGGCAAGGAAGGTTATCT+TGG | + | chr4.1:29756545-29756564 | None:intergenic | 40.0% | |
| AACCATGTTGTAAGTCAAGG+TGG | - | chr4.1:29754823-29754842 | MS.gene52093:CDS | 40.0% | |
| AGGGTTTACATTTGTCCACA+TGG | - | chr4.1:29755475-29755494 | MS.gene52093:CDS | 40.0% | |
| AGTCAACGGACACTATATGA+TGG | - | chr4.1:29757333-29757352 | MS.gene52093:intron | 40.0% | |
| CACCTCTATAGATTGTCTAG+TGG | - | chr4.1:29757800-29757819 | MS.gene52093:intron | 40.0% | |
| CACCTTGTACGTCGATAAAT+TGG | + | chr4.1:29757638-29757657 | None:intergenic | 40.0% | |
| CCACAGATAAAAAGACAGGT+TGG | + | chr4.1:29755603-29755622 | None:intergenic | 40.0% | |
| CTTCGCTTTCTCTGCAAAAA+TGG | + | chr4.1:29756705-29756724 | None:intergenic | 40.0% | |
| GAAACCAGATGAACACAGTT+TGG | - | chr4.1:29756725-29756744 | MS.gene52093:intron | 40.0% | |
| GAACAGTACAGATTGGAAGA+GGG | - | chr4.1:29754943-29754962 | MS.gene52093:intron | 40.0% | |
| GATATCAGTGGTTAAAGGCA+AGG | - | chr4.1:29756328-29756347 | MS.gene52093:CDS | 40.0% | |
| GCGTTATGGAACAAAGTCAA+CGG | - | chr4.1:29757319-29757338 | MS.gene52093:intron | 40.0% | |
| GTTCTTTGATGAACAGTTGC+AGG | - | chr4.1:29758207-29758226 | MS.gene52093:CDS | 40.0% | |
| TAAATGGGGGAAAAAAGGCA+AGG | + | chr4.1:29756558-29756577 | None:intergenic | 40.0% | |
| TATGCTTGACTATCTTGTCG+AGG | - | chr4.1:29757061-29757080 | MS.gene52093:intron | 40.0% | |
| TCTTGCAAGATCCTCGTTAA+TGG | + | chr4.1:29758422-29758441 | None:intergenic | 40.0% | |
| TGAACAGTACAGATTGGAAG+AGG | - | chr4.1:29754942-29754961 | MS.gene52093:intron | 40.0% | |
| TTACAAGTTGTGATCTGCAG+CGG | + | chr4.1:29756466-29756485 | None:intergenic | 40.0% | |
| TTTCCCAAACTGTGTTCATC+TGG | + | chr4.1:29756732-29756751 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCGTGTTTGATGT+TGG | + | chr4.1:29755437-29755456 | None:intergenic | 40.0% |
| ! | ATTGGGCTAGAATATGGTTG+TGG | - | chr4.1:29756431-29756450 | MS.gene52093:intron | 40.0% |
| ! | CATTTTTGCAGAGAAAGCGA+AGG | - | chr4.1:29756703-29756722 | MS.gene52093:intron | 40.0% |
| ! | CCAACCTGTCTTTTTATCTG+TGG | - | chr4.1:29755600-29755619 | MS.gene52093:intron | 40.0% |
| ! | GTGGTTAAAGGCAAGGTTTT+AGG | - | chr4.1:29756335-29756354 | MS.gene52093:CDS | 40.0% |
| ! | GTTTAGTAGTTCTTCTGGGA+TGG | - | chr4.1:29754765-29754784 | MS.gene52093:intron | 40.0% |
| ! | TTTGGTTCCACTTTCTAAGG+AGG | + | chr4.1:29755367-29755386 | None:intergenic | 40.0% |
| !! | ACATCGCGAACAGTTTTATC+AGG | + | chr4.1:29755956-29755975 | None:intergenic | 40.0% |
| !! | CTCCTCCCAATGTTTTAAGT+TGG | - | chr4.1:29756866-29756885 | MS.gene52093:intron | 40.0% |
| !! | CTTCTTGTTGATTCAGTTCC+AGG | - | chr4.1:29754877-29754896 | MS.gene52093:intron | 40.0% |
| !! | TCTTCTGGGATGGTATATTC+TGG | - | chr4.1:29754775-29754794 | MS.gene52093:intron | 40.0% |
| !!! | AAGTGCGTCGTTTTTGTAAG+TGG | - | chr4.1:29757509-29757528 | MS.gene52093:intron | 40.0% |
| AGAATATGACCCCATGCTTG+GGG | + | chr4.1:29757289-29757308 | None:intergenic | 45.0% | |
| AGATCCTCGTTAATGGCAAC+AGG | + | chr4.1:29758415-29758434 | None:intergenic | 45.0% | |
| ATGTCAGAGATGGTCCCAAT+GGG | - | chr4.1:29754730-29754749 | MS.gene52093:intron | 45.0% | |
| CACCACCTTGACTTACAACA+TGG | + | chr4.1:29754828-29754847 | None:intergenic | 45.0% | |
| CATGTTGTAAGTCAAGGTGG+TGG | - | chr4.1:29754826-29754845 | MS.gene52093:CDS | 45.0% | |
| GAGAATATGACCCCATGCTT+GGG | + | chr4.1:29757290-29757309 | None:intergenic | 45.0% | |
| GCACCAACACTTCTGATTGA+AGG | + | chr4.1:29755452-29755471 | None:intergenic | 45.0% | |
| GCTTCTTCAGGATAAGTCGT+TGG | - | chr4.1:29757227-29757246 | MS.gene52093:intron | 45.0% | |
| TGAGAATATGACCCCATGCT+TGG | + | chr4.1:29757291-29757310 | None:intergenic | 45.0% | |
| TGATGTTGGCACAACACATG+TGG | + | chr4.1:29755423-29755442 | None:intergenic | 45.0% | |
| TGCTCCATGAGTTGCTTCAT+GGG | + | chr4.1:29757586-29757605 | None:intergenic | 45.0% | |
| TTCTCACATGTCACGCGTTA+TGG | - | chr4.1:29757305-29757324 | MS.gene52093:intron | 45.0% | |
| ! | ACGCCTTCAATCAGAAGTGT+TGG | - | chr4.1:29755446-29755465 | MS.gene52093:CDS | 45.0% |
| !! | ATCAGAAGTGTTGGTGCTAC+AGG | - | chr4.1:29755455-29755474 | MS.gene52093:CDS | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | - | chr4.1:29755972-29755991 | MS.gene52093:intron | 45.0% |
| !! | TCAGAAGTGTTGGTGCTACA+GGG | - | chr4.1:29755456-29755475 | MS.gene52093:CDS | 45.0% |
| ACTGCCTGTTGCCATTAACG+AGG | - | chr4.1:29758408-29758427 | MS.gene52093:CDS | 50.0% | |
| ATGGAGGCAGAGTCAAACAG+AGG | - | chr4.1:29754631-29754650 | MS.gene52093:CDS | 50.0% | |
| CAGGGCTTAAGCATGACACA+GGG | - | chr4.1:29754896-29754915 | MS.gene52093:intron | 50.0% | |
| CATGTCAGAGATGGTCCCAA+TGG | - | chr4.1:29754729-29754748 | MS.gene52093:intron | 50.0% | |
| CGTTCGTCTCAGCACTTCAT+AGG | + | chr4.1:29755042-29755061 | None:intergenic | 50.0% | |
| CTGCTCCATGAGTTGCTTCA+TGG | + | chr4.1:29757587-29757606 | None:intergenic | 50.0% | |
| GAATATGACCCCATGCTTGG+GGG | + | chr4.1:29757288-29757307 | None:intergenic | 50.0% | |
| GCTTAAGCATGACACAGGGT+TGG | - | chr4.1:29754900-29754919 | MS.gene52093:intron | 50.0% | |
| GTCTGTCTGCAAGTCTGATC+AGG | - | chr4.1:29755567-29755586 | MS.gene52093:intron | 50.0% | |
| TCGTTAATGGCAACAGGCAG+TGG | + | chr4.1:29758409-29758428 | None:intergenic | 50.0% | |
| TGGAGGCAGAGTCAAACAGA+GGG | - | chr4.1:29754632-29754651 | MS.gene52093:CDS | 50.0% | |
| TGGATTCATGCACACAGCAC+AGG | + | chr4.1:29756068-29756087 | None:intergenic | 50.0% | |
| TGGGGGAAAAAAGGCAAGGA+AGG | + | chr4.1:29756554-29756573 | None:intergenic | 50.0% | |
| TGTGCCTTGTGTGGCAAAAG+AGG | + | chr4.1:29758243-29758262 | None:intergenic | 50.0% | |
| TTAATGGCAACAGGCAGTGG+CGG | + | chr4.1:29758406-29758425 | None:intergenic | 50.0% | |
| ! | GGCATTTGGCTCATAATGCC+AGG | + | chr4.1:29758385-29758404 | None:intergenic | 50.0% |
| ! | GTTGTAAGTCAAGGTGGTGG+TGG | - | chr4.1:29754829-29754848 | MS.gene52093:CDS | 50.0% |
| ! | TCGACCTCTTTTGCCACACA+AGG | - | chr4.1:29758236-29758255 | MS.gene52093:CDS | 50.0% |
| !! | ACACAGGGTTGGCTGTTGAA+TGG | - | chr4.1:29754911-29754930 | MS.gene52093:intron | 50.0% |
| !! | CTGTTCGCGATGTTGCTTTG+AGG | - | chr4.1:29755963-29755982 | MS.gene52093:intron | 50.0% |
| !! | GCGATGTTGCTTTGAGGTGT+AGG | - | chr4.1:29755969-29755988 | MS.gene52093:intron | 50.0% |
| !! | GTGGTGGTGGTAATTCAGCT+GGG | - | chr4.1:29754845-29754864 | MS.gene52093:CDS | 50.0% |
| CCAGGGCTTAAGCATGACAC+AGG | - | chr4.1:29754895-29754914 | MS.gene52093:intron | 55.0% | |
| CCTGTGTCATGCTTAAGCCC+TGG | + | chr4.1:29754898-29754917 | None:intergenic | 55.0% | |
| TGCAGCATGAGTGAGATGCC+TGG | - | chr4.1:29758364-29758383 | MS.gene52093:CDS | 55.0% | |
| TGGGCCCATGAAGCAACTCA+TGG | - | chr4.1:29757579-29757598 | MS.gene52093:intron | 55.0% | |
| !! | GGTGGTGGTGGTAATTCAGC+TGG | - | chr4.1:29754844-29754863 | MS.gene52093:CDS | 55.0% |
| !! | GTAAGTCAAGGTGGTGGTGG+TGG | - | chr4.1:29754832-29754851 | MS.gene52093:CDS | 55.0% |
| CAACAGGCAGTGGCGGCATT+TGG | + | chr4.1:29758399-29758418 | None:intergenic | 60.0% | |
| TCGGCGCTACCCCCAAGCAT+GGG | - | chr4.1:29757276-29757295 | MS.gene52093:intron | 65.0% | |
| TTCGGCGCTACCCCCAAGCA+TGG | - | chr4.1:29757275-29757294 | MS.gene52093:intron | 65.0% | |
| CGGCGCTACCCCCAAGCATG+GGG | - | chr4.1:29757277-29757296 | MS.gene52093:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29754631 | 29758465 | 29754631 | ID=MS.gene52093 |
| chr4.1 | mRNA | 29754631 | 29758465 | 29754631 | ID=MS.gene52093.t1;Parent=MS.gene52093 |
| chr4.1 | exon | 29758122 | 29758465 | 29758122 | ID=MS.gene52093.t1.exon1;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29758122 | 29758465 | 29758122 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29757096 | 29757195 | 29757096 | ID=MS.gene52093.t1.exon2;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29757096 | 29757195 | 29757096 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29756326 | 29756382 | 29756326 | ID=MS.gene52093.t1.exon3;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29756326 | 29756382 | 29756326 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29755742 | 29755859 | 29755742 | ID=MS.gene52093.t1.exon4;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29755742 | 29755859 | 29755742 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29755442 | 29755524 | 29755442 | ID=MS.gene52093.t1.exon5;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29755442 | 29755524 | 29755442 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29754812 | 29754873 | 29754812 | ID=MS.gene52093.t1.exon6;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29754812 | 29754873 | 29754812 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| chr4.1 | exon | 29754631 | 29754727 | 29754631 | ID=MS.gene52093.t1.exon7;Parent=MS.gene52093.t1 |
| chr4.1 | CDS | 29754631 | 29754727 | 29754631 | ID=cds.MS.gene52093.t1;Parent=MS.gene52093.t1 |
| Gene Sequence |
| Protein sequence |
