Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52272.t1 | XP_003624235.1 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.80E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52272.t1 | Q9T072 | 37.4 | 227 | 119 | 6 | 118 | 332 | 109 | 324 | 3.3e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52272.t1 | G7KSG4 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.0e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52272.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050439 | MS.gene52272 | 0.824416 | 8.17E-54 | -1.69E-46 |
| MS.gene058543 | MS.gene52272 | 0.983106 | 7.62E-157 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52272.t1 | MTR_7g080780 | 91.789 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 0.0 | 597 |
| MS.gene52272.t1 | MTR_7g080780 | 91.463 | 328 | 21 | 3 | 14 | 340 | 1 | 322 | 0.0 | 572 |
| MS.gene52272.t1 | MTR_8g009020 | 44.800 | 250 | 106 | 5 | 115 | 338 | 84 | 327 | 7.32e-58 | 190 |
| MS.gene52272.t1 | MTR_2g104490 | 36.571 | 350 | 160 | 10 | 1 | 332 | 1 | 306 | 3.49e-52 | 175 |
| MS.gene52272.t1 | MTR_4g009540 | 36.957 | 368 | 161 | 13 | 1 | 334 | 1 | 331 | 1.17e-51 | 174 |
| MS.gene52272.t1 | MTR_2g104550 | 37.216 | 352 | 161 | 9 | 1 | 333 | 1 | 311 | 6.91e-51 | 172 |
| MS.gene52272.t1 | MTR_4g009110 | 33.154 | 371 | 190 | 7 | 1 | 334 | 1 | 350 | 7.79e-51 | 172 |
| MS.gene52272.t1 | MTR_8g009010 | 36.190 | 315 | 131 | 9 | 28 | 329 | 10 | 267 | 4.21e-49 | 167 |
| MS.gene52272.t1 | MTR_2g104490 | 36.061 | 330 | 151 | 9 | 1 | 313 | 1 | 287 | 5.18e-48 | 164 |
| MS.gene52272.t1 | MTR_4g009540 | 36.888 | 347 | 148 | 13 | 1 | 313 | 1 | 310 | 1.59e-46 | 160 |
| MS.gene52272.t1 | MTR_5g014600 | 34.441 | 331 | 167 | 10 | 48 | 333 | 9 | 334 | 8.75e-43 | 151 |
| MS.gene52272.t1 | MTR_0250s0040 | 40.761 | 184 | 100 | 2 | 160 | 334 | 78 | 261 | 2.05e-40 | 143 |
| MS.gene52272.t1 | MTR_5g014520 | 40.476 | 210 | 104 | 4 | 141 | 335 | 128 | 331 | 9.96e-40 | 143 |
| MS.gene52272.t1 | MTR_2g104560 | 43.085 | 188 | 97 | 3 | 157 | 337 | 44 | 228 | 1.04e-39 | 140 |
| MS.gene52272.t1 | MTR_4g092700 | 45.355 | 183 | 91 | 2 | 156 | 329 | 144 | 326 | 1.35e-39 | 142 |
| MS.gene52272.t1 | MTR_5g014640 | 43.429 | 175 | 93 | 1 | 165 | 333 | 149 | 323 | 2.01e-39 | 142 |
| MS.gene52272.t1 | MTR_4g097940 | 45.349 | 172 | 87 | 2 | 168 | 332 | 153 | 324 | 1.11e-38 | 140 |
| MS.gene52272.t1 | MTR_6g047570 | 38.865 | 229 | 123 | 5 | 115 | 329 | 102 | 327 | 3.90e-37 | 136 |
| MS.gene52272.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 138 | 309 | 5.94e-37 | 135 |
| MS.gene52272.t1 | MTR_0011s0210 | 41.667 | 180 | 96 | 1 | 169 | 339 | 182 | 361 | 7.12e-37 | 136 |
| MS.gene52272.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 153 | 324 | 8.32e-37 | 135 |
| MS.gene52272.t1 | MTR_0011s0260 | 42.105 | 171 | 90 | 1 | 169 | 330 | 182 | 352 | 1.97e-36 | 135 |
| MS.gene52272.t1 | MTR_0246s0020 | 38.000 | 200 | 109 | 2 | 155 | 340 | 183 | 381 | 3.64e-35 | 132 |
| MS.gene52272.t1 | MTR_4g067010 | 38.953 | 172 | 99 | 2 | 169 | 334 | 146 | 317 | 5.69e-34 | 127 |
| MS.gene52272.t1 | MTR_2g104500 | 35.371 | 229 | 131 | 4 | 110 | 334 | 57 | 272 | 1.06e-33 | 125 |
| MS.gene52272.t1 | MTR_4g066460 | 37.143 | 210 | 121 | 4 | 132 | 334 | 120 | 325 | 1.70e-33 | 126 |
| MS.gene52272.t1 | MTR_2g010450 | 40.426 | 188 | 102 | 2 | 152 | 329 | 159 | 346 | 2.62e-33 | 126 |
| MS.gene52272.t1 | MTR_8g069740 | 33.117 | 308 | 137 | 10 | 24 | 312 | 8 | 265 | 2.79e-33 | 124 |
| MS.gene52272.t1 | MTR_5g014560 | 37.500 | 176 | 101 | 1 | 169 | 335 | 130 | 305 | 1.14e-31 | 121 |
| MS.gene52272.t1 | MTR_2g104650 | 39.423 | 208 | 100 | 5 | 134 | 329 | 71 | 264 | 2.13e-31 | 119 |
| MS.gene52272.t1 | MTR_0246s0020 | 38.172 | 186 | 98 | 3 | 155 | 324 | 183 | 367 | 3.44e-31 | 121 |
| MS.gene52272.t1 | MTR_4g097950 | 34.836 | 244 | 129 | 6 | 117 | 334 | 11 | 250 | 4.75e-31 | 118 |
| MS.gene52272.t1 | MTR_2g104530 | 39.412 | 170 | 98 | 1 | 171 | 335 | 106 | 275 | 1.05e-30 | 117 |
| MS.gene52272.t1 | MTR_4g066380 | 34.884 | 215 | 126 | 5 | 132 | 336 | 118 | 328 | 1.65e-30 | 118 |
| MS.gene52272.t1 | MTR_4g098035 | 28.947 | 266 | 165 | 7 | 82 | 334 | 84 | 338 | 4.82e-26 | 106 |
| MS.gene52272.t1 | MTR_0246s0050 | 29.119 | 261 | 161 | 7 | 82 | 329 | 63 | 312 | 5.32e-26 | 106 |
| MS.gene52272.t1 | MTR_2g104590 | 37.634 | 186 | 80 | 5 | 156 | 329 | 58 | 219 | 1.41e-25 | 102 |
| MS.gene52272.t1 | MTR_4g009420 | 37.500 | 168 | 93 | 4 | 163 | 329 | 36 | 192 | 3.23e-23 | 95.5 |
| MS.gene52272.t1 | MTR_7g451650 | 38.686 | 137 | 83 | 1 | 193 | 329 | 57 | 192 | 1.53e-22 | 94.0 |
| MS.gene52272.t1 | MTR_4g009510 | 37.748 | 151 | 91 | 3 | 180 | 329 | 52 | 200 | 1.32e-20 | 89.0 |
| MS.gene52272.t1 | MTR_7g050350 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene52272.t1 | MTR_7g451650 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene52272.t1 | MTR_4g009420 | 37.500 | 152 | 83 | 4 | 163 | 313 | 36 | 176 | 1.13e-18 | 83.6 |
| MS.gene52272.t1 | MTR_7g451650 | 38.843 | 121 | 73 | 1 | 193 | 313 | 57 | 176 | 4.06e-18 | 81.6 |
| MS.gene52272.t1 | MTR_6g047550 | 54.667 | 75 | 33 | 1 | 156 | 230 | 160 | 233 | 2.59e-17 | 81.3 |
| MS.gene52272.t1 | MTR_5g014550 | 32.787 | 122 | 73 | 2 | 200 | 312 | 54 | 175 | 4.75e-13 | 67.4 |
| MS.gene52272.t1 | MTR_8g024790 | 26.733 | 202 | 128 | 6 | 134 | 319 | 256 | 453 | 6.92e-12 | 66.6 |
| MS.gene52272.t1 | MTR_8g064700 | 23.737 | 198 | 120 | 5 | 152 | 333 | 233 | 415 | 7.20e-11 | 63.2 |
| MS.gene52272.t1 | MTR_1g112680 | 28.302 | 106 | 69 | 1 | 131 | 229 | 271 | 376 | 9.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52272.t1 | AT2G22770 | 40.000 | 195 | 93 | 2 | 164 | 334 | 126 | 320 | 3.07e-34 | 128 |
| MS.gene52272.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene52272.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene52272.t1 | AT2G22760 | 39.286 | 196 | 99 | 5 | 152 | 329 | 98 | 291 | 1.88e-32 | 123 |
| MS.gene52272.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 110 | 297 | 6.74e-31 | 119 |
| MS.gene52272.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 138 | 325 | 1.16e-30 | 119 |
| MS.gene52272.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 134 | 321 | 1.49e-30 | 118 |
| MS.gene52272.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 110 | 296 | 3.10e-30 | 117 |
| MS.gene52272.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 138 | 324 | 5.02e-30 | 117 |
| MS.gene52272.t1 | AT2G22760 | 37.430 | 179 | 93 | 4 | 152 | 313 | 98 | 274 | 5.66e-27 | 108 |
| MS.gene52272.t1 | AT4G09820 | 31.452 | 124 | 74 | 2 | 171 | 294 | 364 | 476 | 9.93e-15 | 75.5 |
| MS.gene52272.t1 | AT5G57150 | 28.485 | 165 | 99 | 5 | 171 | 317 | 55 | 218 | 1.92e-12 | 66.6 |
| MS.gene52272.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.39e-12 | 66.2 |
| MS.gene52272.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.47e-12 | 65.9 |
| MS.gene52272.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 55 | 207 | 2.54e-12 | 65.9 |
| MS.gene52272.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 56 | 208 | 6.82e-12 | 65.5 |
| MS.gene52272.t1 | AT4G29930 | 26.144 | 153 | 111 | 2 | 171 | 322 | 55 | 206 | 9.03e-12 | 64.3 |
| MS.gene52272.t1 | AT5G46760 | 22.672 | 247 | 147 | 6 | 75 | 297 | 329 | 555 | 9.98e-12 | 66.2 |
Find 52 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7.4:-25693421 | MS.gene52272:intron |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7.4:-25692992 | MS.gene52272:CDS |
| ACTTAATGGCTGAGAGAAAA+AGG | 0.287774 | 7.4:-25692829 | MS.gene52272:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7.4:-25693038 | MS.gene52272:CDS |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7.4:-25691830 | MS.gene52272:CDS |
| GACAGTGCAAGATCACTTAA+TGG | 0.320859 | 7.4:-25692843 | MS.gene52272:CDS |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7.4:+25691778 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7.4:-25692768 | MS.gene52272:intron |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7.4:+25693217 | None:intergenic |
| CAATGTCACATAAAACTAAA+AGG | 0.349007 | 7.4:-25692940 | MS.gene52272:CDS |
| ACTAAAAGGAGGGGTACTAT+AGG | 0.369752 | 7.4:-25692926 | MS.gene52272:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7.4:+25692953 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7.4:+25693227 | None:intergenic |
| CTAAAAGGAGGGGTACTATA+GGG | 0.401026 | 7.4:-25692925 | MS.gene52272:CDS |
| TATAGTTGTACTATTGTCTT+GGG | 0.401514 | 7.4:+25693174 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7.4:-25690701 | MS.gene52272:CDS |
| CTATAGTTGTACTATTGTCT+TGG | 0.429287 | 7.4:+25693173 | None:intergenic |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7.4:-25691560 | MS.gene52272:intron |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7.4:+25692984 | None:intergenic |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7.4:-25692779 | MS.gene52272:CDS |
| AAGGACAAAATACTATTTGT+GGG | 0.455985 | 7.4:+25693124 | None:intergenic |
| AAAGGACAAAATACTATTTG+TGG | 0.457372 | 7.4:+25693123 | None:intergenic |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7.4:+25693036 | None:intergenic |
| AGCAGTACCATGTTACCATT+TGG | 0.468184 | 7.4:-25691595 | MS.gene52272:CDS |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7.4:-25693442 | None:intergenic |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7.4:-25691707 | MS.gene52272:CDS |
| TTGCTCATCAAATGTGGTGG+TGG | 0.503552 | 7.4:+25693270 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.506739 | 7.4:-25691671 | MS.gene52272:CDS |
| ACAACTATAGTTAATGTTGA+AGG | 0.511718 | 7.4:-25693160 | MS.gene52272:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7.4:-25690698 | MS.gene52272:CDS |
| GAAAGATGAAGCAAGGGTGA+AGG | 0.528465 | 7.4:-25692903 | MS.gene52272:CDS |
| GTCACATAAAACTAAAAGGA+GGG | 0.537994 | 7.4:-25692936 | MS.gene52272:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7.4:+25692995 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7.4:+25693201 | None:intergenic |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7.4:-25690737 | MS.gene52272:CDS |
| AATCTCAAGCAGTGATTGTG+AGG | 0.568261 | 7.4:+25691729 | None:intergenic |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7.4:+25692991 | None:intergenic |
| ACAAGAATAGAAGCACCAAA+TGG | 0.574238 | 7.4:+25691580 | None:intergenic |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7.4:-25691783 | MS.gene52272:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7.4:+25693105 | None:intergenic |
| CTATAGGGAAAGATGAAGCA+AGG | 0.582480 | 7.4:-25692910 | MS.gene52272:CDS |
| GGTGAAGGAAGCAACAAAGA+AGG | 0.584977 | 7.4:-25692888 | MS.gene52272:CDS |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7.4:+25693202 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7.4:-25690725 | MS.gene52272:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7.4:+25693267 | None:intergenic |
| TGTCACATAAAACTAAAAGG+AGG | 0.628863 | 7.4:-25692937 | MS.gene52272:CDS |
| AGAAGCACCAAATGGTAACA+TGG | 0.632448 | 7.4:+25691588 | None:intergenic |
| TATAGGGAAAGATGAAGCAA+GGG | 0.632516 | 7.4:-25692909 | MS.gene52272:CDS |
| TCACATAAAACTAAAAGGAG+GGG | 0.633390 | 7.4:-25692935 | MS.gene52272:CDS |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7.4:+25693264 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7.4:-25690743 | MS.gene52272:CDS |
| AGGACAAAATACTATTTGTG+GGG | 0.660565 | 7.4:+25693125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTATAATTGAATATTAA+AGG | - | chr7.4:25692165-25692184 | MS.gene52272:intron | 10.0% |
| !!! | AACTAATTTGATTTTTTTTA+AGG | + | chr7.4:25691688-25691707 | None:intergenic | 10.0% |
| !!! | AATTGAAAGATTTTTTATTT+TGG | + | chr7.4:25692878-25692897 | None:intergenic | 10.0% |
| !!! | ATGATATTTTGATTTTTTTA+GGG | + | chr7.4:25691874-25691893 | None:intergenic | 10.0% |
| !!! | ATTGAAAGATTTTTTATTTT+GGG | + | chr7.4:25692877-25692896 | None:intergenic | 10.0% |
| !!! | TATGATATTTTGATTTTTTT+AGG | + | chr7.4:25691875-25691894 | None:intergenic | 10.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | - | chr7.4:25690758-25690777 | MS.gene52272:intron | 10.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | - | chr7.4:25693263-25693282 | MS.gene52272:CDS | 15.0% |
| !! | AAAACTACTTTACAAAATTA+TGG | - | chr7.4:25691570-25691589 | MS.gene52272:CDS | 15.0% |
| !! | AAACTACTTTACAAAATTAT+GGG | - | chr7.4:25691571-25691590 | MS.gene52272:CDS | 15.0% |
| !! | ATAGTTTATTATTATATGCA+AGG | + | chr7.4:25692707-25692726 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | + | chr7.4:25692778-25692797 | None:intergenic | 15.0% |
| !! | GTTTAATTCTGTATTATTAT+CGG | - | chr7.4:25692037-25692056 | MS.gene52272:intron | 15.0% |
| !! | TAGTTTATTATTATATGCAA+GGG | + | chr7.4:25692706-25692725 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | + | chr7.4:25692779-25692798 | None:intergenic | 15.0% |
| !!! | CTATCTTAGTATAATTTTTT+TGG | - | chr7.4:25692110-25692129 | MS.gene52272:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | - | chr7.4:25693175-25693194 | MS.gene52272:CDS | 15.0% |
| !!! | TTTTTATTATCTTTGATCAT+AGG | - | chr7.4:25690787-25690806 | MS.gene52272:intron | 15.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | - | chr7.4:25693412-25693431 | MS.gene52272:intron | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | + | chr7.4:25692197-25692216 | None:intergenic | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | + | chr7.4:25692772-25692791 | None:intergenic | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | + | chr7.4:25692196-25692215 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | - | chr7.4:25692214-25692233 | MS.gene52272:intron | 20.0% |
| !! | TAAATAAATTCGTACGATAA+TGG | + | chr7.4:25691452-25691471 | None:intergenic | 20.0% |
| !!! | ACAACTTTTTTTCTTCAAAT+AGG | + | chr7.4:25692854-25692873 | None:intergenic | 20.0% |
| !!! | ATAAATCAATCATTTTGGAA+TGG | - | chr7.4:25693070-25693089 | MS.gene52272:CDS | 20.0% |
| !!! | CTTTTAAAGATGAATAAGTA+AGG | - | chr7.4:25692659-25692678 | MS.gene52272:intron | 20.0% |
| !!! | GTCAAATAAATCAATCATTT+TGG | - | chr7.4:25693065-25693084 | MS.gene52272:CDS | 20.0% |
| !!! | TTATTTCTATTTGTGTGAAA+TGG | - | chr7.4:25693043-25693062 | MS.gene52272:CDS | 20.0% |
| ! | AAAAAAAATCGAGCTTAAAG+TGG | - | chr7.4:25691748-25691767 | MS.gene52272:CDS | 25.0% |
| ! | AAAAAAATCGAGCTTAAAGT+GGG | - | chr7.4:25691749-25691768 | MS.gene52272:CDS | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | + | chr7.4:25690993-25691012 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | + | chr7.4:25691011-25691030 | None:intergenic | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | + | chr7.4:25690992-25691011 | None:intergenic | 25.0% |
| ! | ACAACTATAGTTAATGTTGA+AGG | - | chr7.4:25690953-25690972 | MS.gene52272:intron | 25.0% |
| ! | CAATGTCACATAAAACTAAA+AGG | - | chr7.4:25691173-25691192 | MS.gene52272:intron | 25.0% |
| ! | TATAGTTGTACTATTGTCTT+GGG | + | chr7.4:25690942-25690961 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCAATG+TGG | - | chr7.4:25693102-25693121 | MS.gene52272:CDS | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | - | chr7.4:25690793-25690812 | MS.gene52272:intron | 25.0% |
| !! | AAAAAGTCAATGAAAAGCAT+AGG | + | chr7.4:25691986-25692005 | None:intergenic | 25.0% |
| !! | AAGCCAAAACAACTTTTATA+TGG | - | chr7.4:25691628-25691647 | MS.gene52272:CDS | 25.0% |
| !! | CATCCATATAAAAGTTGTTT+TGG | + | chr7.4:25691634-25691653 | None:intergenic | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | - | chr7.4:25693310-25693329 | MS.gene52272:intron | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | - | chr7.4:25690692-25690711 | MS.gene52272:CDS | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | - | chr7.4:25693309-25693328 | MS.gene52272:intron | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | + | chr7.4:25691175-25691194 | None:intergenic | 25.0% |
| AAAAAATCGAGCTTAAAGTG+GGG | - | chr7.4:25691750-25691769 | MS.gene52272:CDS | 30.0% | |
| AATTCATTGTGAGAAGCAAA+AGG | - | chr7.4:25692442-25692461 | MS.gene52272:intron | 30.0% | |
| AGGACAAAATACTATTTGTG+GGG | + | chr7.4:25690991-25691010 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | + | chr7.4:25690915-25690934 | None:intergenic | 30.0% | |
| CTATAGTTGTACTATTGTCT+TGG | + | chr7.4:25690943-25690962 | None:intergenic | 30.0% | |
| GTCACATAAAACTAAAAGGA+GGG | - | chr7.4:25691177-25691196 | MS.gene52272:intron | 30.0% | |
| TCACATAAAACTAAAAGGAG+GGG | - | chr7.4:25691178-25691197 | MS.gene52272:intron | 30.0% | |
| TCTGAGAAAATATCTATTGG+AGG | - | chr7.4:25693415-25693434 | MS.gene52272:intron | 30.0% | |
| TGCTTATGTTCACACTAAAA+TGG | - | chr7.4:25693126-25693145 | MS.gene52272:CDS | 30.0% | |
| TGTCACATAAAACTAAAAGG+AGG | - | chr7.4:25691176-25691195 | MS.gene52272:intron | 30.0% | |
| TTGAGTTACCAAAAGATAGA+AGG | + | chr7.4:25691132-25691151 | None:intergenic | 30.0% | |
| TTGGAACAAAGATAAGAAGA+GGG | + | chr7.4:25690914-25690933 | None:intergenic | 30.0% | |
| ! | ATGAATAAGTAAGGTGTCTA+GGG | - | chr7.4:25692668-25692687 | MS.gene52272:intron | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | + | chr7.4:25693406-25693425 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | - | chr7.4:25692283-25692302 | MS.gene52272:intron | 30.0% |
| !! | ACTATTGTCTTGGGTTTTAT+TGG | + | chr7.4:25690933-25690952 | None:intergenic | 30.0% |
| !!! | AATCAATCATTTTGGAATGG+AGG | - | chr7.4:25693073-25693092 | MS.gene52272:CDS | 30.0% |
| !!! | ATCAATCATTTTGGAATGGA+GGG | - | chr7.4:25693074-25693093 | MS.gene52272:CDS | 30.0% |
| !!! | GATGAGACAAGTTTATTTTG+TGG | - | chr7.4:25691013-25691032 | MS.gene52272:intron | 30.0% |
| AAACTCTTGCTCATCAAATG+TGG | + | chr7.4:25690852-25690871 | None:intergenic | 35.0% | |
| ACTTAATGGCTGAGAGAAAA+AGG | - | chr7.4:25691284-25691303 | MS.gene52272:intron | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | + | chr7.4:25692836-25692855 | None:intergenic | 35.0% | |
| ATTATTATATGCAAGGGTCG+AGG | + | chr7.4:25692700-25692719 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | - | chr7.4:25692330-25692349 | MS.gene52272:intron | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | + | chr7.4:25692338-25692357 | None:intergenic | 35.0% | |
| TATAGGGAAAGATGAAGCAA+GGG | - | chr7.4:25691204-25691223 | MS.gene52272:intron | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | - | chr7.4:25692406-25692425 | MS.gene52272:intron | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | - | chr7.4:25692553-25692572 | MS.gene52272:intron | 35.0% | |
| TTCCAAAGACTTGATTGAGT+TGG | + | chr7.4:25691080-25691099 | None:intergenic | 35.0% | |
| ! | AAGACAATTTTATCTCCCGT+GGG | + | chr7.4:25692749-25692768 | None:intergenic | 35.0% |
| ! | ACCAAAAGATAGAAGGTATG+TGG | + | chr7.4:25691125-25691144 | None:intergenic | 35.0% |
| ! | GATGAATAAGTAAGGTGTCT+AGG | - | chr7.4:25692667-25692686 | MS.gene52272:intron | 35.0% |
| !! | ACAAGAATAGAAGCACCAAA+TGG | + | chr7.4:25692536-25692555 | None:intergenic | 35.0% |
| !! | AGTTGGAGCTATTACTTTTG+TGG | + | chr7.4:25691063-25691082 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | + | chr7.4:25691163-25691182 | None:intergenic | 35.0% |
| AATCTCAAGCAGTGATTGTG+AGG | + | chr7.4:25692387-25692406 | None:intergenic | 40.0% | |
| AGCAGTACCATGTTACCATT+TGG | - | chr7.4:25692518-25692537 | MS.gene52272:intron | 40.0% | |
| CTATAGGGAAAGATGAAGCA+AGG | - | chr7.4:25691203-25691222 | MS.gene52272:intron | 40.0% | |
| CTCCAACTCAATCAAGTCTT+TGG | - | chr7.4:25691075-25691094 | MS.gene52272:intron | 40.0% | |
| GAACATAAGCATCCACATTG+AGG | + | chr7.4:25693117-25693136 | None:intergenic | 40.0% | |
| GACAGTGCAAGATCACTTAA+TGG | - | chr7.4:25691270-25691289 | MS.gene52272:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+GGG | + | chr7.4:25692832-25692851 | None:intergenic | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | + | chr7.4:25691121-25691140 | None:intergenic | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | + | chr7.4:25693396-25693415 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | - | chr7.4:25691345-25691364 | MS.gene52272:intron | 40.0% |
| ! | GAAGACAATTTTATCTCCCG+TGG | + | chr7.4:25692750-25692769 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | - | chr7.4:25691121-25691140 | MS.gene52272:intron | 40.0% |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | - | chr7.4:25693352-25693371 | MS.gene52272:intron | 40.0% |
| !! | ACTAAAAGGAGGGGTACTAT+AGG | - | chr7.4:25691187-25691206 | MS.gene52272:intron | 40.0% |
| !! | AGAAGCACCAAATGGTAACA+TGG | + | chr7.4:25692528-25692547 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | + | chr7.4:25690889-25690908 | None:intergenic | 40.0% |
| !! | CTAAAAGGAGGGGTACTATA+GGG | - | chr7.4:25691188-25691207 | MS.gene52272:intron | 40.0% |
| !!! | AAGCTAACCTTTTTCAAGCC+AGG | + | chr7.4:25691355-25691374 | None:intergenic | 40.0% |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | + | chr7.4:25691347-25691366 | None:intergenic | 40.0% |
| CTCTTGCTCATCAAATGTGG+TGG | + | chr7.4:25690849-25690868 | None:intergenic | 45.0% | |
| GAAAGATGAAGCAAGGGTGA+AGG | - | chr7.4:25691210-25691229 | MS.gene52272:intron | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | + | chr7.4:25690899-25690918 | None:intergenic | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | - | chr7.4:25693370-25693389 | MS.gene52272:intron | 45.0% | |
| GGCTGAGAGAAAAAGGAGAA+GGG | - | chr7.4:25691291-25691310 | MS.gene52272:intron | 45.0% | |
| GGTCAATCATTGTGAGAAGG+AGG | + | chr7.4:25692833-25692852 | None:intergenic | 45.0% | |
| GGTGAAGGAAGCAACAAAGA+AGG | - | chr7.4:25691225-25691244 | MS.gene52272:intron | 45.0% | |
| TGGCTGAGAGAAAAAGGAGA+AGG | - | chr7.4:25691290-25691309 | MS.gene52272:intron | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | + | chr7.4:25690846-25690865 | None:intergenic | 45.0% | |
| !!! | ATTTTATATCTAAAAAAAAT+GGG | - | chr7.4:25691513-25691532 | MS.gene52272:intron | 5.0% |
| !!! | TAAATATACTTTTTTAAAAA+TGG | + | chr7.4:25693202-25693221 | None:intergenic | 5.0% |
| !!! | TATTTTATATCTAAAAAAAA+TGG | - | chr7.4:25691512-25691531 | MS.gene52272:intron | 5.0% |
| GCACTTTCAGCCATGATACC+TGG | - | chr7.4:25691334-25691353 | MS.gene52272:intron | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | - | chr7.4:25693376-25693395 | MS.gene52272:intron | 50.0% | |
| TGTCAGCTAAGCAATGCCCA+CGG | - | chr7.4:25692730-25692749 | MS.gene52272:intron | 50.0% | |
| ! | TGGGCATTGCTTAGCTGACA+GGG | + | chr7.4:25692730-25692749 | None:intergenic | 50.0% |
| CATGGCCATGGATGACCTTG+TGG | - | chr7.4:25693388-25693407 | MS.gene52272:intron | 55.0% | |
| GTCAGCTAAGCAATGCCCAC+GGG | - | chr7.4:25692731-25692750 | MS.gene52272:intron | 55.0% | |
| ! | GTGGGCATTGCTTAGCTGAC+AGG | + | chr7.4:25692731-25692750 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25690678 | 25693457 | 25690678 | ID=MS.gene52272 |
| chr7.4 | mRNA | 25690678 | 25693457 | 25690678 | ID=MS.gene52272.t1;Parent=MS.gene52272 |
| chr7.4 | exon | 25693422 | 25693457 | 25693422 | ID=MS.gene52272.t1.exon1;Parent=MS.gene52272.t1 |
| chr7.4 | CDS | 25693422 | 25693457 | 25693422 | ID=cds.MS.gene52272.t1;Parent=MS.gene52272.t1 |
| chr7.4 | exon | 25692769 | 25693326 | 25692769 | ID=MS.gene52272.t1.exon2;Parent=MS.gene52272.t1 |
| chr7.4 | CDS | 25692769 | 25693326 | 25692769 | ID=cds.MS.gene52272.t1;Parent=MS.gene52272.t1 |
| chr7.4 | exon | 25691561 | 25691902 | 25691561 | ID=MS.gene52272.t1.exon3;Parent=MS.gene52272.t1 |
| chr7.4 | CDS | 25691561 | 25691902 | 25691561 | ID=cds.MS.gene52272.t1;Parent=MS.gene52272.t1 |
| chr7.4 | exon | 25690678 | 25690764 | 25690678 | ID=MS.gene52272.t1.exon4;Parent=MS.gene52272.t1 |
| chr7.4 | CDS | 25690678 | 25690764 | 25690678 | ID=cds.MS.gene52272.t1;Parent=MS.gene52272.t1 |
| Gene Sequence |
| Protein sequence |
