Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058543.t1 | XP_003624235.1 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.80E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058543.t1 | Q9T072 | 37.4 | 227 | 119 | 6 | 118 | 332 | 109 | 324 | 3.3e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058543.t1 | G7KSG4 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.0e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene058543.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050439 | MS.gene058543 | 0.807974 | 3.89E-50 | -1.69E-46 |
| MS.gene058543 | MS.gene065908 | 0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene058543 | MS.gene25220 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene058543 | MS.gene28840 | 0.815116 | 1.09E-51 | -1.69E-46 |
| MS.gene058543 | MS.gene43289 | 0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene058543 | MS.gene45624 | 0.814121 | 1.81E-51 | -1.69E-46 |
| MS.gene058543 | MS.gene52272 | 0.983106 | 7.62E-157 | -1.69E-46 |
| MS.gene058543 | MS.gene60343 | 0.80094 | 1.14E-48 | -1.69E-46 |
| MS.gene058543 | MS.gene64023 | 0.800535 | 1.38E-48 | -1.69E-46 |
| MS.gene058543 | MS.gene96598 | 0.820132 | 8.06E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058543.t1 | MTR_7g080780 | 91.789 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 0.0 | 597 |
| MS.gene058543.t1 | MTR_7g080780 | 91.463 | 328 | 21 | 3 | 14 | 340 | 1 | 322 | 0.0 | 572 |
| MS.gene058543.t1 | MTR_8g009020 | 44.800 | 250 | 106 | 5 | 115 | 338 | 84 | 327 | 7.32e-58 | 190 |
| MS.gene058543.t1 | MTR_2g104490 | 36.571 | 350 | 160 | 10 | 1 | 332 | 1 | 306 | 3.49e-52 | 175 |
| MS.gene058543.t1 | MTR_4g009540 | 36.957 | 368 | 161 | 13 | 1 | 334 | 1 | 331 | 1.17e-51 | 174 |
| MS.gene058543.t1 | MTR_2g104550 | 37.216 | 352 | 161 | 9 | 1 | 333 | 1 | 311 | 6.91e-51 | 172 |
| MS.gene058543.t1 | MTR_4g009110 | 33.154 | 371 | 190 | 7 | 1 | 334 | 1 | 350 | 7.79e-51 | 172 |
| MS.gene058543.t1 | MTR_8g009010 | 36.190 | 315 | 131 | 9 | 28 | 329 | 10 | 267 | 4.21e-49 | 167 |
| MS.gene058543.t1 | MTR_2g104490 | 36.061 | 330 | 151 | 9 | 1 | 313 | 1 | 287 | 5.18e-48 | 164 |
| MS.gene058543.t1 | MTR_4g009540 | 36.888 | 347 | 148 | 13 | 1 | 313 | 1 | 310 | 1.59e-46 | 160 |
| MS.gene058543.t1 | MTR_5g014600 | 34.441 | 331 | 167 | 10 | 48 | 333 | 9 | 334 | 8.75e-43 | 151 |
| MS.gene058543.t1 | MTR_0250s0040 | 40.761 | 184 | 100 | 2 | 160 | 334 | 78 | 261 | 2.05e-40 | 143 |
| MS.gene058543.t1 | MTR_5g014520 | 40.476 | 210 | 104 | 4 | 141 | 335 | 128 | 331 | 9.96e-40 | 143 |
| MS.gene058543.t1 | MTR_2g104560 | 43.085 | 188 | 97 | 3 | 157 | 337 | 44 | 228 | 1.04e-39 | 140 |
| MS.gene058543.t1 | MTR_4g092700 | 45.355 | 183 | 91 | 2 | 156 | 329 | 144 | 326 | 1.35e-39 | 142 |
| MS.gene058543.t1 | MTR_5g014640 | 43.429 | 175 | 93 | 1 | 165 | 333 | 149 | 323 | 2.01e-39 | 142 |
| MS.gene058543.t1 | MTR_4g097940 | 45.349 | 172 | 87 | 2 | 168 | 332 | 153 | 324 | 1.11e-38 | 140 |
| MS.gene058543.t1 | MTR_6g047570 | 38.865 | 229 | 123 | 5 | 115 | 329 | 102 | 327 | 3.90e-37 | 136 |
| MS.gene058543.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 138 | 309 | 5.94e-37 | 135 |
| MS.gene058543.t1 | MTR_0011s0210 | 41.667 | 180 | 96 | 1 | 169 | 339 | 182 | 361 | 7.12e-37 | 136 |
| MS.gene058543.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 153 | 324 | 8.32e-37 | 135 |
| MS.gene058543.t1 | MTR_0011s0260 | 42.105 | 171 | 90 | 1 | 169 | 330 | 182 | 352 | 1.97e-36 | 135 |
| MS.gene058543.t1 | MTR_0246s0020 | 38.000 | 200 | 109 | 2 | 155 | 340 | 183 | 381 | 3.64e-35 | 132 |
| MS.gene058543.t1 | MTR_4g067010 | 38.953 | 172 | 99 | 2 | 169 | 334 | 146 | 317 | 5.69e-34 | 127 |
| MS.gene058543.t1 | MTR_2g104500 | 35.371 | 229 | 131 | 4 | 110 | 334 | 57 | 272 | 1.06e-33 | 125 |
| MS.gene058543.t1 | MTR_4g066460 | 37.143 | 210 | 121 | 4 | 132 | 334 | 120 | 325 | 1.70e-33 | 126 |
| MS.gene058543.t1 | MTR_2g010450 | 40.426 | 188 | 102 | 2 | 152 | 329 | 159 | 346 | 2.62e-33 | 126 |
| MS.gene058543.t1 | MTR_8g069740 | 33.117 | 308 | 137 | 10 | 24 | 312 | 8 | 265 | 2.79e-33 | 124 |
| MS.gene058543.t1 | MTR_5g014560 | 37.500 | 176 | 101 | 1 | 169 | 335 | 130 | 305 | 1.14e-31 | 121 |
| MS.gene058543.t1 | MTR_2g104650 | 39.423 | 208 | 100 | 5 | 134 | 329 | 71 | 264 | 2.13e-31 | 119 |
| MS.gene058543.t1 | MTR_0246s0020 | 38.172 | 186 | 98 | 3 | 155 | 324 | 183 | 367 | 3.44e-31 | 121 |
| MS.gene058543.t1 | MTR_4g097950 | 34.836 | 244 | 129 | 6 | 117 | 334 | 11 | 250 | 4.75e-31 | 118 |
| MS.gene058543.t1 | MTR_2g104530 | 39.412 | 170 | 98 | 1 | 171 | 335 | 106 | 275 | 1.05e-30 | 117 |
| MS.gene058543.t1 | MTR_4g066380 | 34.884 | 215 | 126 | 5 | 132 | 336 | 118 | 328 | 1.65e-30 | 118 |
| MS.gene058543.t1 | MTR_4g098035 | 28.947 | 266 | 165 | 7 | 82 | 334 | 84 | 338 | 4.82e-26 | 106 |
| MS.gene058543.t1 | MTR_0246s0050 | 29.119 | 261 | 161 | 7 | 82 | 329 | 63 | 312 | 5.32e-26 | 106 |
| MS.gene058543.t1 | MTR_2g104590 | 37.634 | 186 | 80 | 5 | 156 | 329 | 58 | 219 | 1.41e-25 | 102 |
| MS.gene058543.t1 | MTR_4g009420 | 37.500 | 168 | 93 | 4 | 163 | 329 | 36 | 192 | 3.23e-23 | 95.5 |
| MS.gene058543.t1 | MTR_7g451650 | 38.686 | 137 | 83 | 1 | 193 | 329 | 57 | 192 | 1.53e-22 | 94.0 |
| MS.gene058543.t1 | MTR_4g009510 | 37.748 | 151 | 91 | 3 | 180 | 329 | 52 | 200 | 1.32e-20 | 89.0 |
| MS.gene058543.t1 | MTR_7g050350 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene058543.t1 | MTR_7g451650 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene058543.t1 | MTR_4g009420 | 37.500 | 152 | 83 | 4 | 163 | 313 | 36 | 176 | 1.13e-18 | 83.6 |
| MS.gene058543.t1 | MTR_7g451650 | 38.843 | 121 | 73 | 1 | 193 | 313 | 57 | 176 | 4.06e-18 | 81.6 |
| MS.gene058543.t1 | MTR_6g047550 | 54.667 | 75 | 33 | 1 | 156 | 230 | 160 | 233 | 2.59e-17 | 81.3 |
| MS.gene058543.t1 | MTR_5g014550 | 32.787 | 122 | 73 | 2 | 200 | 312 | 54 | 175 | 4.75e-13 | 67.4 |
| MS.gene058543.t1 | MTR_8g024790 | 26.733 | 202 | 128 | 6 | 134 | 319 | 256 | 453 | 6.92e-12 | 66.6 |
| MS.gene058543.t1 | MTR_8g064700 | 23.737 | 198 | 120 | 5 | 152 | 333 | 233 | 415 | 7.20e-11 | 63.2 |
| MS.gene058543.t1 | MTR_1g112680 | 28.302 | 106 | 69 | 1 | 131 | 229 | 271 | 376 | 9.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058543.t1 | AT2G22770 | 40.000 | 195 | 93 | 2 | 164 | 334 | 126 | 320 | 3.07e-34 | 128 |
| MS.gene058543.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene058543.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene058543.t1 | AT2G22760 | 39.286 | 196 | 99 | 5 | 152 | 329 | 98 | 291 | 1.88e-32 | 123 |
| MS.gene058543.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 110 | 297 | 6.74e-31 | 119 |
| MS.gene058543.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 138 | 325 | 1.16e-30 | 119 |
| MS.gene058543.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 134 | 321 | 1.49e-30 | 118 |
| MS.gene058543.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 110 | 296 | 3.10e-30 | 117 |
| MS.gene058543.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 138 | 324 | 5.02e-30 | 117 |
| MS.gene058543.t1 | AT2G22760 | 37.430 | 179 | 93 | 4 | 152 | 313 | 98 | 274 | 5.66e-27 | 108 |
| MS.gene058543.t1 | AT4G09820 | 31.452 | 124 | 74 | 2 | 171 | 294 | 364 | 476 | 9.93e-15 | 75.5 |
| MS.gene058543.t1 | AT5G57150 | 28.485 | 165 | 99 | 5 | 171 | 317 | 55 | 218 | 1.92e-12 | 66.6 |
| MS.gene058543.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.39e-12 | 66.2 |
| MS.gene058543.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.47e-12 | 65.9 |
| MS.gene058543.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 55 | 207 | 2.54e-12 | 65.9 |
| MS.gene058543.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 56 | 208 | 6.82e-12 | 65.5 |
| MS.gene058543.t1 | AT4G29930 | 26.144 | 153 | 111 | 2 | 171 | 322 | 55 | 206 | 9.03e-12 | 64.3 |
| MS.gene058543.t1 | AT5G46760 | 22.672 | 247 | 147 | 6 | 75 | 297 | 329 | 555 | 9.98e-12 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTATAATTGAATATTAA+AGG | + | 50482:11203-11222 | MS.gene058543:intron | 10.0% |
| !!! | AACTAATTTGATTTTTTTTA+AGG | - | 50482:10727-10746 | None:intergenic | 10.0% |
| !!! | AATTGAAAGATTTTTTATTT+TGG | - | 50482:11916-11935 | None:intergenic | 10.0% |
| !!! | ATGATATTTTGATTTTTTTA+GGG | - | 50482:10912-10931 | None:intergenic | 10.0% |
| !!! | ATTGAAAGATTTTTTATTTT+GGG | - | 50482:11915-11934 | None:intergenic | 10.0% |
| !!! | TATGATATTTTGATTTTTTT+AGG | - | 50482:10913-10932 | None:intergenic | 10.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | + | 50482:9797-9816 | MS.gene058543:intron | 10.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | + | 50482:12301-12320 | MS.gene058543:intron | 15.0% |
| !! | AAAACTACTTTACAAAATTA+TGG | + | 50482:10609-10628 | MS.gene058543:intron | 15.0% |
| !! | AAACTACTTTACAAAATTAT+GGG | + | 50482:10610-10629 | MS.gene058543:intron | 15.0% |
| !! | ATAGTTTATTATTATATGCA+AGG | - | 50482:11745-11764 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | - | 50482:11816-11835 | None:intergenic | 15.0% |
| !! | GTTTAATTCTGTATTATTAT+CGG | + | 50482:11075-11094 | MS.gene058543:intron | 15.0% |
| !! | TAGTTTATTATTATATGCAA+GGG | - | 50482:11744-11763 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | - | 50482:11817-11836 | None:intergenic | 15.0% |
| !!! | CTATCTTAGTATAATTTTTT+TGG | + | 50482:11148-11167 | MS.gene058543:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | + | 50482:12213-12232 | MS.gene058543:intron | 15.0% |
| !!! | TTTTTATTATCTTTGATCAT+AGG | + | 50482:9826-9845 | MS.gene058543:intron | 15.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | + | 50482:12450-12469 | MS.gene058543:CDS | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | - | 50482:11235-11254 | None:intergenic | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | - | 50482:11810-11829 | None:intergenic | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | - | 50482:11234-11253 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | + | 50482:11252-11271 | MS.gene058543:intron | 20.0% |
| !! | TAAATAAATTCGTACGATAA+TGG | - | 50482:10491-10510 | None:intergenic | 20.0% |
| !!! | ACAACTTTTTTTCTTCAAAT+AGG | - | 50482:11892-11911 | None:intergenic | 20.0% |
| !!! | ATAAATCAATCATTTTGGAA+TGG | + | 50482:12108-12127 | MS.gene058543:intron | 20.0% |
| !!! | CTTTTAAAGATGAATAAGTA+AGG | + | 50482:11697-11716 | MS.gene058543:intron | 20.0% |
| !!! | GTCAAATAAATCAATCATTT+TGG | + | 50482:12103-12122 | MS.gene058543:intron | 20.0% |
| !!! | TTATTTCTATTTGTGTGAAA+TGG | + | 50482:12081-12100 | MS.gene058543:intron | 20.0% |
| ! | AAAAAAAATCGAGCTTAAAG+TGG | + | 50482:10787-10806 | MS.gene058543:intron | 25.0% |
| ! | AAAAAAATCGAGCTTAAAGT+GGG | + | 50482:10788-10807 | MS.gene058543:intron | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | - | 50482:10032-10051 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | - | 50482:10050-10069 | None:intergenic | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | - | 50482:10031-10050 | None:intergenic | 25.0% |
| ! | ACAACTATAGTTAATGTTGA+AGG | + | 50482:9992-10011 | MS.gene058543:CDS | 25.0% |
| ! | CAATGTCACATAAAACTAAA+AGG | + | 50482:10212-10231 | MS.gene058543:CDS | 25.0% |
| ! | TATAGTTGTACTATTGTCTT+GGG | - | 50482:9981-10000 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCAATG+TGG | + | 50482:12140-12159 | MS.gene058543:intron | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | + | 50482:9832-9851 | MS.gene058543:intron | 25.0% |
| !! | AAAAAGTCAATGAAAAGCAT+AGG | - | 50482:11024-11043 | None:intergenic | 25.0% |
| !! | AAGCCAAAACAACTTTTATA+TGG | + | 50482:10667-10686 | MS.gene058543:intron | 25.0% |
| !! | CATCCATATAAAAGTTGTTT+TGG | - | 50482:10673-10692 | None:intergenic | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | + | 50482:12348-12367 | MS.gene058543:intron | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | + | 50482:9731-9750 | MS.gene058543:CDS | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | + | 50482:12347-12366 | MS.gene058543:intron | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | - | 50482:10214-10233 | None:intergenic | 25.0% |
| AAAAAATCGAGCTTAAAGTG+GGG | + | 50482:10789-10808 | MS.gene058543:intron | 30.0% | |
| AATTCATTGTGAGAAGCAAA+AGG | + | 50482:11480-11499 | MS.gene058543:CDS | 30.0% | |
| AGGACAAAATACTATTTGTG+GGG | - | 50482:10030-10049 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | - | 50482:9954-9973 | None:intergenic | 30.0% | |
| CTATAGTTGTACTATTGTCT+TGG | - | 50482:9982-10001 | None:intergenic | 30.0% | |
| GTCACATAAAACTAAAAGGA+GGG | + | 50482:10216-10235 | MS.gene058543:CDS | 30.0% | |
| TCACATAAAACTAAAAGGAG+GGG | + | 50482:10217-10236 | MS.gene058543:CDS | 30.0% | |
| TCTGAGAAAATATCTATTGG+AGG | + | 50482:12453-12472 | MS.gene058543:CDS | 30.0% | |
| TGCTTATGTTCACACTAAAA+TGG | + | 50482:12164-12183 | MS.gene058543:intron | 30.0% | |
| TGTCACATAAAACTAAAAGG+AGG | + | 50482:10215-10234 | MS.gene058543:CDS | 30.0% | |
| TTGAGTTACCAAAAGATAGA+AGG | - | 50482:10171-10190 | None:intergenic | 30.0% | |
| TTGGAACAAAGATAAGAAGA+GGG | - | 50482:9953-9972 | None:intergenic | 30.0% | |
| ! | ATGAATAAGTAAGGTGTCTA+GGG | + | 50482:11706-11725 | MS.gene058543:intron | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | - | 50482:12444-12463 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | + | 50482:11321-11340 | MS.gene058543:CDS | 30.0% |
| !! | ACTATTGTCTTGGGTTTTAT+TGG | - | 50482:9972-9991 | None:intergenic | 30.0% |
| !!! | AATCAATCATTTTGGAATGG+AGG | + | 50482:12111-12130 | MS.gene058543:intron | 30.0% |
| !!! | ATCAATCATTTTGGAATGGA+GGG | + | 50482:12112-12131 | MS.gene058543:intron | 30.0% |
| !!! | GATGAGACAAGTTTATTTTG+TGG | + | 50482:10052-10071 | MS.gene058543:CDS | 30.0% |
| AAACTCTTGCTCATCAAATG+TGG | - | 50482:9891-9910 | None:intergenic | 35.0% | |
| ACTTAATGGCTGAGAGAAAA+AGG | + | 50482:10323-10342 | MS.gene058543:CDS | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | - | 50482:11874-11893 | None:intergenic | 35.0% | |
| ATTATTATATGCAAGGGTCG+AGG | - | 50482:11738-11757 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | + | 50482:11368-11387 | MS.gene058543:CDS | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | - | 50482:11376-11395 | None:intergenic | 35.0% | |
| TATAGGGAAAGATGAAGCAA+GGG | + | 50482:10243-10262 | MS.gene058543:CDS | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | + | 50482:11444-11463 | MS.gene058543:CDS | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | + | 50482:11591-11610 | MS.gene058543:CDS | 35.0% | |
| TTCCAAAGACTTGATTGAGT+TGG | - | 50482:10119-10138 | None:intergenic | 35.0% | |
| ! | AAGACAATTTTATCTCCCGT+GGG | - | 50482:11787-11806 | None:intergenic | 35.0% |
| ! | ACCAAAAGATAGAAGGTATG+TGG | - | 50482:10164-10183 | None:intergenic | 35.0% |
| ! | GATGAATAAGTAAGGTGTCT+AGG | + | 50482:11705-11724 | MS.gene058543:intron | 35.0% |
| !! | ACAAGAATAGAAGCACCAAA+TGG | - | 50482:11574-11593 | None:intergenic | 35.0% |
| !! | AGTTGGAGCTATTACTTTTG+TGG | - | 50482:10102-10121 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | - | 50482:10202-10221 | None:intergenic | 35.0% |
| AATCTCAAGCAGTGATTGTG+AGG | - | 50482:11425-11444 | None:intergenic | 40.0% | |
| AGCAGTACCATGTTACCATT+TGG | + | 50482:11556-11575 | MS.gene058543:CDS | 40.0% | |
| CTATAGGGAAAGATGAAGCA+AGG | + | 50482:10242-10261 | MS.gene058543:CDS | 40.0% | |
| CTCCAACTCAATCAAGTCTT+TGG | + | 50482:10114-10133 | MS.gene058543:CDS | 40.0% | |
| GAACATAAGCATCCACATTG+AGG | - | 50482:12155-12174 | None:intergenic | 40.0% | |
| GACAGTGCAAGATCACTTAA+TGG | + | 50482:10309-10328 | MS.gene058543:CDS | 40.0% | |
| GTCAATCATTGTGAGAAGGA+GGG | - | 50482:11870-11889 | None:intergenic | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | - | 50482:10160-10179 | None:intergenic | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | - | 50482:12434-12453 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | + | 50482:10384-10403 | MS.gene058543:CDS | 40.0% |
| ! | GAAGACAATTTTATCTCCCG+TGG | - | 50482:11788-11807 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | + | 50482:10160-10179 | MS.gene058543:CDS | 40.0% |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | + | 50482:12390-12409 | MS.gene058543:intron | 40.0% |
| !! | ACTAAAAGGAGGGGTACTAT+AGG | + | 50482:10226-10245 | MS.gene058543:CDS | 40.0% |
| !! | AGAAGCACCAAATGGTAACA+TGG | - | 50482:11566-11585 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | - | 50482:9928-9947 | None:intergenic | 40.0% |
| !! | CTAAAAGGAGGGGTACTATA+GGG | + | 50482:10227-10246 | MS.gene058543:CDS | 40.0% |
| !!! | AAGCTAACCTTTTTCAAGCC+AGG | - | 50482:10394-10413 | None:intergenic | 40.0% |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | - | 50482:10386-10405 | None:intergenic | 40.0% |
| CTCTTGCTCATCAAATGTGG+TGG | - | 50482:9888-9907 | None:intergenic | 45.0% | |
| GAAAGATGAAGCAAGGGTGA+AGG | + | 50482:10249-10268 | MS.gene058543:CDS | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | - | 50482:9938-9957 | None:intergenic | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | + | 50482:12408-12427 | MS.gene058543:intron | 45.0% | |
| GGCTGAGAGAAAAAGGAGAA+GGG | + | 50482:10330-10349 | MS.gene058543:CDS | 45.0% | |
| GGTCAATCATTGTGAGAAGG+AGG | - | 50482:11871-11890 | None:intergenic | 45.0% | |
| GGTGAAGGAAGCAACAAAGA+AGG | + | 50482:10264-10283 | MS.gene058543:CDS | 45.0% | |
| TGGCTGAGAGAAAAAGGAGA+AGG | + | 50482:10329-10348 | MS.gene058543:CDS | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | - | 50482:9885-9904 | None:intergenic | 45.0% | |
| !!! | ATTTTATATCTAAAAAAAAT+GGG | + | 50482:10552-10571 | MS.gene058543:intron | 5.0% |
| !!! | TAAATATACTTTTTTAAAAA+TGG | - | 50482:12240-12259 | None:intergenic | 5.0% |
| !!! | TATTTTATATCTAAAAAAAA+TGG | + | 50482:10551-10570 | MS.gene058543:intron | 5.0% |
| GCACTTTCAGCCATGATACC+TGG | + | 50482:10373-10392 | MS.gene058543:CDS | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | + | 50482:12414-12433 | MS.gene058543:CDS | 50.0% | |
| TGTCAGCTAAGCAATGCCCA+CGG | + | 50482:11768-11787 | MS.gene058543:intron | 50.0% | |
| ! | TGGGCATTGCTTAGCTGACA+GGG | - | 50482:11768-11787 | None:intergenic | 50.0% |
| CATGGCCATGGATGACCTTG+TGG | + | 50482:12426-12445 | MS.gene058543:CDS | 55.0% | |
| GTCAGCTAAGCAATGCCCAC+GGG | + | 50482:11769-11788 | MS.gene058543:intron | 55.0% | |
| ! | GTGGGCATTGCTTAGCTGAC+AGG | - | 50482:11769-11788 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50482 | gene | 9717 | 12495 | 9717 | ID=MS.gene058543 |
| 50482 | mRNA | 9717 | 12495 | 9717 | ID=MS.gene058543.t1;Parent=MS.gene058543 |
| 50482 | exon | 9717 | 9752 | 9717 | ID=MS.gene058543.t1.exon1;Parent=MS.gene058543.t1 |
| 50482 | CDS | 9717 | 9752 | 9717 | ID=cds.MS.gene058543.t1;Parent=MS.gene058543.t1 |
| 50482 | exon | 9848 | 10405 | 9848 | ID=MS.gene058543.t1.exon2;Parent=MS.gene058543.t1 |
| 50482 | CDS | 9848 | 10405 | 9848 | ID=cds.MS.gene058543.t1;Parent=MS.gene058543.t1 |
| 50482 | exon | 11271 | 11612 | 11271 | ID=MS.gene058543.t1.exon3;Parent=MS.gene058543.t1 |
| 50482 | CDS | 11271 | 11612 | 11271 | ID=cds.MS.gene058543.t1;Parent=MS.gene058543.t1 |
| 50482 | exon | 12409 | 12495 | 12409 | ID=MS.gene058543.t1.exon4;Parent=MS.gene058543.t1 |
| 50482 | CDS | 12409 | 12495 | 12409 | ID=cds.MS.gene058543.t1;Parent=MS.gene058543.t1 |
| Gene Sequence |
| Protein sequence |
