Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52301.t1 | AES67467.2 | 81.7 | 142 | 22 | 3 | 91 | 230 | 69 | 208 | 3.50E-60 | 241.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52301.t1 | Q5PPX5 | 31.8 | 179 | 112 | 4 | 90 | 268 | 86 | 254 | 4.4e-19 | 96.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52301.t1 | G7IRQ1 | 81.7 | 142 | 22 | 3 | 91 | 230 | 69 | 208 | 2.5e-60 | 241.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049666 | MS.gene52301 | 0.808918 | 2.45E-50 | -1.69E-46 |
MS.gene053998 | MS.gene52301 | 0.818101 | 2.34E-52 | -1.69E-46 |
MS.gene056174 | MS.gene52301 | 0.863093 | 3.18E-64 | -1.69E-46 |
MS.gene057314 | MS.gene52301 | 0.806882 | 6.63E-50 | -1.69E-46 |
MS.gene060167 | MS.gene52301 | 0.803165 | 3.97E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52301.t1 | MTR_2g094040 | 70.464 | 237 | 34 | 8 | 1 | 230 | 1 | 208 | 6.16e-103 | 299 |
MS.gene52301.t1 | MTR_3g005800 | 60.204 | 196 | 72 | 3 | 75 | 270 | 1 | 190 | 2.26e-80 | 241 |
MS.gene52301.t1 | MTR_3g005790 | 49.640 | 139 | 63 | 3 | 83 | 221 | 10 | 141 | 1.52e-44 | 148 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52301.t1 | AT1G72175 | 53.333 | 180 | 78 | 3 | 91 | 270 | 10 | 183 | 5.96e-51 | 166 |
MS.gene52301.t1 | AT1G22510 | 53.889 | 180 | 77 | 3 | 91 | 270 | 10 | 183 | 9.60e-45 | 150 |
MS.gene52301.t1 | AT1G72175 | 53.947 | 152 | 64 | 3 | 119 | 270 | 4 | 149 | 2.27e-38 | 132 |
MS.gene52301.t1 | AT1G22510 | 54.088 | 159 | 67 | 3 | 112 | 270 | 49 | 201 | 3.98e-33 | 120 |
MS.gene52301.t1 | AT4G33940 | 28.022 | 182 | 123 | 4 | 81 | 262 | 64 | 237 | 3.03e-21 | 90.5 |
MS.gene52301.t1 | AT4G33940 | 27.941 | 136 | 91 | 3 | 81 | 216 | 64 | 192 | 7.96e-14 | 68.9 |
Find 64 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGAAAAGAAAGGGAAAT+TGG | 0.207524 | 7.3:-23961963 | MS.gene52301:CDS |
GGCTAAGATAGAAGAAGAAT+TGG | 0.288794 | 7.3:-23962047 | MS.gene52301:CDS |
GGCAAAGTATTGATCTATAA+AGG | 0.294780 | 7.3:+23961296 | None:intergenic |
TCATCGACCCGTTACCCTTT+TGG | 0.297940 | 7.3:-23961750 | MS.gene52301:CDS |
GGTTGAAGAGAAAGTGAAAT+TGG | 0.301053 | 7.3:-23962086 | MS.gene52301:CDS |
TGAATTCCAATCAGAACTTC+AGG | 0.330596 | 7.3:+23961671 | None:intergenic |
GGAAGAAGATTAATGTAATT+AGG | 0.352640 | 7.3:+23961332 | None:intergenic |
TCTATCTTAGCCTCTAACCC+TGG | 0.356011 | 7.3:+23962058 | None:intergenic |
GAAGAAAAGGTTGAAAAGAA+AGG | 0.390677 | 7.3:-23961971 | MS.gene52301:CDS |
GTTGAAAAGAAAGGGAAATT+GGG | 0.390750 | 7.3:-23961962 | MS.gene52301:CDS |
CACGACCCTGAAGTTCTGAT+TGG | 0.390853 | 7.3:-23961677 | MS.gene52301:CDS |
TCAAAGAGTCTCTGAGTAAT+GGG | 0.393871 | 7.3:+23961611 | None:intergenic |
ATTCGGAAAAGTTGGTCTCT+TGG | 0.403931 | 7.3:-23961362 | MS.gene52301:CDS |
AGAGAAAAGGAAAGGGAAAT+CGG | 0.414418 | 7.3:-23962020 | MS.gene52301:CDS |
ATTGGAAAACCCAGGGTTAG+AGG | 0.416917 | 7.3:-23962068 | MS.gene52301:CDS |
GGGTGAAGAGAAAGGGAAAT+CGG | 0.418833 | 7.3:-23962149 | MS.gene52301:CDS |
GTGAAGCTACATGCTCTCAT+TGG | 0.435563 | 7.3:-23961847 | MS.gene52301:CDS |
CTATCTTAGCCTCTAACCCT+GGG | 0.438058 | 7.3:+23962059 | None:intergenic |
AAAAGCCTCCGCACGAGAAA+AGG | 0.440424 | 7.3:+23961584 | None:intergenic |
AACTTGTACAATCGCTGATT+GGG | 0.444017 | 7.3:-23961816 | MS.gene52301:CDS |
AAGAAAAGGTTGAAAAGAAA+GGG | 0.445187 | 7.3:-23961970 | MS.gene52301:CDS |
CTACCTCAGCTTCTAACCCT+AGG | 0.452493 | 7.3:+23961936 | None:intergenic |
GCTAAGATAGAAGAAGAATT+GGG | 0.456108 | 7.3:-23962046 | MS.gene52301:CDS |
ATGTAGCTTCACATATAATC+TGG | 0.464921 | 7.3:+23961858 | None:intergenic |
CAACTTGTACAATCGCTGAT+TGG | 0.465387 | 7.3:-23961817 | MS.gene52301:CDS |
AAGAATTGGGTGAAGAGAAA+AGG | 0.466239 | 7.3:-23962033 | MS.gene52301:CDS |
CCTTCTGGGATGATGTCAAT+GGG | 0.470014 | 7.3:+23961467 | None:intergenic |
CAATACTTTGCCTCCGTCAC+GGG | 0.478130 | 7.3:-23961285 | MS.gene52301:CDS |
GCAAAGTATTGATCTATAAA+GGG | 0.479128 | 7.3:+23961297 | None:intergenic |
GTAGGAACCAAAAGGGTAAC+GGG | 0.484752 | 7.3:+23961743 | None:intergenic |
ACACGAGCTCTGAAAAGAAA+AGG | 0.485582 | 7.3:+23961530 | None:intergenic |
GGAGACTGAGAGAGAAGAAA+TGG | 0.487507 | 7.3:-23962107 | MS.gene52301:CDS |
ATCAAAGAGTCTCTGAGTAA+TGG | 0.493238 | 7.3:+23961610 | None:intergenic |
AAAGGGAAATTGGGAAACCT+AGG | 0.493922 | 7.3:-23961953 | MS.gene52301:CDS |
GCTGAGGTAGAAGAAGAGAA+AGG | 0.494774 | 7.3:-23961923 | MS.gene52301:CDS |
AAGAAAAGGAAGAGATGTAT+CGG | 0.495031 | 7.3:+23961544 | None:intergenic |
CTGAGGTAGAAGAAGAGAAA+GGG | 0.500548 | 7.3:-23961922 | MS.gene52301:CDS |
ACCTTCTGGGATGATGTCAA+TGG | 0.502368 | 7.3:+23961466 | None:intergenic |
GCAGGAATATTCGGAAAAGT+TGG | 0.504703 | 7.3:-23961370 | MS.gene52301:intron |
GAGAAAGGGAAATTGAAAGA+AGG | 0.506259 | 7.3:-23961908 | MS.gene52301:CDS |
AGAGGGTGAGATAGAAGAAA+AGG | 0.508654 | 7.3:-23961984 | MS.gene52301:CDS |
AACTACAACTGCGACGATGA+TGG | 0.510417 | 7.3:-23961713 | MS.gene52301:CDS |
CTCTCTCAGTCTCCAACGCT+AGG | 0.520593 | 7.3:+23962116 | None:intergenic |
TGGGTGAAGAGAAAAGGAAA+GGG | 0.526426 | 7.3:-23962027 | MS.gene52301:CDS |
TCAATACTTTGCCTCCGTCA+CGG | 0.533287 | 7.3:-23961286 | MS.gene52301:CDS |
TTGGGTGAAGAGAAAAGGAA+AGG | 0.536616 | 7.3:-23962028 | MS.gene52301:CDS |
GAATTCCAATCAGAACTTCA+GGG | 0.553145 | 7.3:+23961672 | None:intergenic |
AACGAAAATTACGCCCGTGA+CGG | 0.561983 | 7.3:+23961272 | None:intergenic |
AGTAGGAACCAAAAGGGTAA+CGG | 0.564577 | 7.3:+23961742 | None:intergenic |
TGACAGTGTGGACATTTACA+AGG | 0.564971 | 7.3:+23961770 | None:intergenic |
AGAAAAGGAAGAGATGTATC+GGG | 0.571993 | 7.3:+23961545 | None:intergenic |
GGAAAACGAAAACCTAGCGT+TGG | 0.582482 | 7.3:-23962128 | MS.gene52301:CDS |
GAAAATTACGCCCGTGACGG+AGG | 0.584757 | 7.3:+23961275 | None:intergenic |
TATAAAGGGCAGCAACATGT+AGG | 0.587058 | 7.3:+23961311 | None:intergenic |
AAACCTAGGGTTAGAAGCTG+AGG | 0.601923 | 7.3:-23961939 | MS.gene52301:CDS |
AAGGGAAATTGGGAAACCTA+GGG | 0.602237 | 7.3:-23961952 | MS.gene52301:CDS |
CCCATTGACATCATCCCAGA+AGG | 0.615355 | 7.3:-23961467 | MS.gene52301:intron |
ATCGGAAGAAATATCGTCAG+AGG | 0.626223 | 7.3:-23962002 | MS.gene52301:CDS |
AAGTGAAATTGGAAAACCCA+GGG | 0.639009 | 7.3:-23962075 | MS.gene52301:CDS |
TCGGAAGAAATATCGTCAGA+GGG | 0.641570 | 7.3:-23962001 | MS.gene52301:CDS |
ACATTTACAAGGTTCAATGT+CGG | 0.657703 | 7.3:+23961781 | None:intergenic |
AAAGTGAAATTGGAAAACCC+AGG | 0.679877 | 7.3:-23962076 | MS.gene52301:CDS |
CTTCTGGGATGATGTCAATG+GGG | 0.725072 | 7.3:+23961468 | None:intergenic |
GTAACGGGTCGATGACAGTG+TGG | 0.759412 | 7.3:+23961758 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGAAAAGGTTGAAAAGAAA+GGG | - | chr7.3:23961448-23961467 | MS.gene52301:intron | 25.0% |
! | AATGGAAAAATATAACCTTC+TGG | + | chr7.3:23961969-23961988 | None:intergenic | 25.0% |
! | ATGGAAAAATATAACCTTCT+GGG | + | chr7.3:23961968-23961987 | None:intergenic | 25.0% |
! | GGAAGAAGATTAATGTAATT+AGG | + | chr7.3:23962089-23962108 | None:intergenic | 25.0% |
!! | CAGACTTATAACACTATTTT+TGG | - | chr7.3:23961768-23961787 | MS.gene52301:CDS | 25.0% |
!!! | GCAAAGTATTGATCTATAAA+GGG | + | chr7.3:23962124-23962143 | None:intergenic | 25.0% |
AAGAAAAGGAAGAGATGTAT+CGG | + | chr7.3:23961877-23961896 | None:intergenic | 30.0% | |
ACATTTACAAGGTTCAATGT+CGG | + | chr7.3:23961640-23961659 | None:intergenic | 30.0% | |
ACCAAAACAATTTCACAAGT+TGG | + | chr7.3:23961997-23962016 | None:intergenic | 30.0% | |
ATGTAGCTTCACATATAATC+TGG | + | chr7.3:23961563-23961582 | None:intergenic | 30.0% | |
GAAGAAAAGGTTGAAAAGAA+AGG | - | chr7.3:23961447-23961466 | MS.gene52301:intron | 30.0% | |
GCTAAGATAGAAGAAGAATT+GGG | - | chr7.3:23961372-23961391 | MS.gene52301:intron | 30.0% | |
GTTGAAAAGAAAGGGAAATT+GGG | - | chr7.3:23961456-23961475 | MS.gene52301:intron | 30.0% | |
! | AATTTTGTTCCTTTTTCTGC+AGG | - | chr7.3:23962030-23962049 | MS.gene52301:CDS | 30.0% |
! | TCCAACTTGTGAAATTGTTT+TGG | - | chr7.3:23961993-23962012 | MS.gene52301:CDS | 30.0% |
! | TTTCACAAGTTGGACAAAAA+TGG | + | chr7.3:23961987-23962006 | None:intergenic | 30.0% |
!! | GGCAAAGTATTGATCTATAA+AGG | + | chr7.3:23962125-23962144 | None:intergenic | 30.0% |
!! | TTTTTCAGTAGGAACCAAAA+GGG | + | chr7.3:23961685-23961704 | None:intergenic | 30.0% |
!!! | CAGTTGTAGTTTTTTTCAGT+AGG | + | chr7.3:23961696-23961715 | None:intergenic | 30.0% |
!!! | TTTTTTCAGTAGGAACCAAA+AGG | + | chr7.3:23961686-23961705 | None:intergenic | 30.0% |
AAAGTGAAATTGGAAAACCC+AGG | - | chr7.3:23961342-23961361 | MS.gene52301:CDS | 35.0% | |
AAGAATTGGGTGAAGAGAAA+AGG | - | chr7.3:23961385-23961404 | MS.gene52301:intron | 35.0% | |
AAGTGAAATTGGAAAACCCA+GGG | - | chr7.3:23961343-23961362 | MS.gene52301:CDS | 35.0% | |
AGAAAAGGAAGAGATGTATC+GGG | + | chr7.3:23961876-23961895 | None:intergenic | 35.0% | |
AGAGAAAAGGAAAGGGAAAT+CGG | - | chr7.3:23961398-23961417 | MS.gene52301:intron | 35.0% | |
ATCAAAGAGTCTCTGAGTAA+TGG | + | chr7.3:23961811-23961830 | None:intergenic | 35.0% | |
GAATTCCAATCAGAACTTCA+GGG | + | chr7.3:23961749-23961768 | None:intergenic | 35.0% | |
GAGAAAGGGAAATTGAAAGA+AGG | - | chr7.3:23961510-23961529 | MS.gene52301:CDS | 35.0% | |
GGCTAAGATAGAAGAAGAAT+TGG | - | chr7.3:23961371-23961390 | MS.gene52301:intron | 35.0% | |
GGTTGAAAAGAAAGGGAAAT+TGG | - | chr7.3:23961455-23961474 | MS.gene52301:intron | 35.0% | |
GGTTGAAGAGAAAGTGAAAT+TGG | - | chr7.3:23961332-23961351 | MS.gene52301:CDS | 35.0% | |
TCAAAGAGTCTCTGAGTAAT+GGG | + | chr7.3:23961810-23961829 | None:intergenic | 35.0% | |
TGAATTCCAATCAGAACTTC+AGG | + | chr7.3:23961750-23961769 | None:intergenic | 35.0% | |
! | AACTTGTACAATCGCTGATT+GGG | - | chr7.3:23961602-23961621 | MS.gene52301:CDS | 35.0% |
! | CCTTTTTCTGCAGGAATATT+CGG | - | chr7.3:23962039-23962058 | MS.gene52301:CDS | 35.0% |
AAAGGGAAATTGGGAAACCT+AGG | - | chr7.3:23961465-23961484 | MS.gene52301:intron | 40.0% | |
AAGGGAAATTGGGAAACCTA+GGG | - | chr7.3:23961466-23961485 | MS.gene52301:intron | 40.0% | |
AGAGGGTGAGATAGAAGAAA+AGG | - | chr7.3:23961434-23961453 | MS.gene52301:intron | 40.0% | |
AGTAGGAACCAAAAGGGTAA+CGG | + | chr7.3:23961679-23961698 | None:intergenic | 40.0% | |
ATCGGAAGAAATATCGTCAG+AGG | - | chr7.3:23961416-23961435 | MS.gene52301:intron | 40.0% | |
CAACTTGTACAATCGCTGAT+TGG | - | chr7.3:23961601-23961620 | MS.gene52301:CDS | 40.0% | |
CCGAATATTCCTGCAGAAAA+AGG | + | chr7.3:23962042-23962061 | None:intergenic | 40.0% | |
CTGAGGTAGAAGAAGAGAAA+GGG | - | chr7.3:23961496-23961515 | MS.gene52301:CDS | 40.0% | |
GCAGGAATATTCGGAAAAGT+TGG | - | chr7.3:23962048-23962067 | MS.gene52301:CDS | 40.0% | |
TATAAAGGGCAGCAACATGT+AGG | + | chr7.3:23962110-23962129 | None:intergenic | 40.0% | |
TCGGAAGAAATATCGTCAGA+GGG | - | chr7.3:23961417-23961436 | MS.gene52301:intron | 40.0% | |
TGACAGTGTGGACATTTACA+AGG | + | chr7.3:23961651-23961670 | None:intergenic | 40.0% | |
TGGGTGAAGAGAAAAGGAAA+GGG | - | chr7.3:23961391-23961410 | MS.gene52301:intron | 40.0% | |
TTGGGTGAAGAGAAAAGGAA+AGG | - | chr7.3:23961390-23961409 | MS.gene52301:intron | 40.0% | |
! | ATTCGGAAAAGTTGGTCTCT+TGG | - | chr7.3:23962056-23962075 | MS.gene52301:CDS | 40.0% |
! | TTGATCTTCCTTTTCTCGTG+CGG | - | chr7.3:23961826-23961845 | MS.gene52301:CDS | 40.0% |
!! | ACACGAGCTCTGAAAAGAAA+AGG | + | chr7.3:23961891-23961910 | None:intergenic | 40.0% |
AAACCTAGGGTTAGAAGCTG+AGG | - | chr7.3:23961479-23961498 | MS.gene52301:CDS | 45.0% | |
AACGAAAATTACGCCCGTGA+CGG | + | chr7.3:23962149-23962168 | None:intergenic | 45.0% | |
AACTACAACTGCGACGATGA+TGG | - | chr7.3:23961705-23961724 | MS.gene52301:CDS | 45.0% | |
ATTGGAAAACCCAGGGTTAG+AGG | - | chr7.3:23961350-23961369 | MS.gene52301:CDS | 45.0% | |
CTATCTTAGCCTCTAACCCT+GGG | + | chr7.3:23961362-23961381 | None:intergenic | 45.0% | |
GCTGAGGTAGAAGAAGAGAA+AGG | - | chr7.3:23961495-23961514 | MS.gene52301:CDS | 45.0% | |
GGAAAACGAAAACCTAGCGT+TGG | - | chr7.3:23961290-23961309 | MS.gene52301:CDS | 45.0% | |
GGAGACTGAGAGAGAAGAAA+TGG | - | chr7.3:23961311-23961330 | MS.gene52301:CDS | 45.0% | |
GGGTGAAGAGAAAGGGAAAT+CGG | - | chr7.3:23961269-23961288 | MS.gene52301:CDS | 45.0% | |
GTAGGAACCAAAAGGGTAAC+GGG | + | chr7.3:23961678-23961697 | None:intergenic | 45.0% | |
GTGAAGCTACATGCTCTCAT+TGG | - | chr7.3:23961571-23961590 | MS.gene52301:CDS | 45.0% | |
TCAATACTTTGCCTCCGTCA+CGG | - | chr7.3:23962132-23962151 | MS.gene52301:CDS | 45.0% | |
TCTATCTTAGCCTCTAACCC+TGG | + | chr7.3:23961363-23961382 | None:intergenic | 45.0% | |
!! | ACCTTCTGGGATGATGTCAA+TGG | + | chr7.3:23961955-23961974 | None:intergenic | 45.0% |
!! | CCTTCTGGGATGATGTCAAT+GGG | + | chr7.3:23961954-23961973 | None:intergenic | 45.0% |
!! | CTTCTGGGATGATGTCAATG+GGG | + | chr7.3:23961953-23961972 | None:intergenic | 45.0% |
AAAAGCCTCCGCACGAGAAA+AGG | + | chr7.3:23961837-23961856 | None:intergenic | 50.0% | |
CAATACTTTGCCTCCGTCAC+GGG | - | chr7.3:23962133-23962152 | MS.gene52301:CDS | 50.0% | |
CCCATTGACATCATCCCAGA+AGG | - | chr7.3:23961951-23961970 | MS.gene52301:CDS | 50.0% | |
CTACCTCAGCTTCTAACCCT+AGG | + | chr7.3:23961485-23961504 | None:intergenic | 50.0% | |
! | ATCTTCCTTTTCTCGTGCGG+AGG | - | chr7.3:23961829-23961848 | MS.gene52301:CDS | 50.0% |
! | CACGACCCTGAAGTTCTGAT+TGG | - | chr7.3:23961741-23961760 | MS.gene52301:CDS | 50.0% |
! | TCATCGACCCGTTACCCTTT+TGG | - | chr7.3:23961668-23961687 | MS.gene52301:CDS | 50.0% |
CTCTCTCAGTCTCCAACGCT+AGG | + | chr7.3:23961305-23961324 | None:intergenic | 55.0% | |
GAAAATTACGCCCGTGACGG+AGG | + | chr7.3:23962146-23962165 | None:intergenic | 55.0% | |
! | TCTCGTGCGGAGGCTTTTCA+AGG | - | chr7.3:23961839-23961858 | MS.gene52301:CDS | 55.0% |
!! | GTAACGGGTCGATGACAGTG+TGG | + | chr7.3:23961663-23961682 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 23961267 | 23962173 | 23961267 | ID=MS.gene52301 |
chr7.3 | mRNA | 23961267 | 23962173 | 23961267 | ID=MS.gene52301.t1;Parent=MS.gene52301 |
chr7.3 | exon | 23961468 | 23962173 | 23961468 | ID=MS.gene52301.t1.exon1;Parent=MS.gene52301.t1 |
chr7.3 | CDS | 23961468 | 23962173 | 23961468 | ID=cds.MS.gene52301.t1;Parent=MS.gene52301.t1 |
chr7.3 | exon | 23961267 | 23961388 | 23961267 | ID=MS.gene52301.t1.exon2;Parent=MS.gene52301.t1 |
chr7.3 | CDS | 23961267 | 23961388 | 23961267 | ID=cds.MS.gene52301.t1;Parent=MS.gene52301.t1 |
Gene Sequence |
Protein sequence |