Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52589.t1 | XP_003624192.2 | 87.1 | 186 | 20 | 1 | 1 | 182 | 1 | 186 | 6.10E-77 | 297 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52589.t1 | P29450 | 75.8 | 182 | 40 | 1 | 5 | 182 | 1 | 182 | 5.2e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52589.t1 | B7FGW0 | 87.1 | 186 | 20 | 1 | 1 | 182 | 1 | 186 | 4.4e-77 | 297.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052982 | MS.gene52589 | 0.813563 | 2.40E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene52589 | 0.811534 | 6.67E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene52589 | 0.801042 | 1.08E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene52589 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene52589 | 0.803107 | 4.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52589.t1 | MTR_7g080250 | 93.956 | 182 | 7 | 1 | 5 | 182 | 1 | 182 | 6.23e-103 | 293 |
| MS.gene52589.t1 | MTR_5g021180 | 36.792 | 106 | 59 | 3 | 79 | 177 | 8 | 112 | 3.98e-15 | 68.6 |
| MS.gene52589.t1 | MTR_1g023140 | 39.048 | 105 | 56 | 3 | 79 | 176 | 6 | 109 | 7.16e-14 | 65.1 |
| MS.gene52589.t1 | MTR_3g112410 | 41.463 | 82 | 43 | 2 | 99 | 176 | 29 | 109 | 6.11e-13 | 62.8 |
| MS.gene52589.t1 | MTR_7g009070 | 38.462 | 78 | 43 | 2 | 99 | 172 | 49 | 125 | 7.64e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52589.t1 | AT5G16400 | 77.863 | 131 | 23 | 2 | 56 | 182 | 57 | 185 | 1.45e-65 | 199 |
| MS.gene52589.t1 | AT3G02730 | 61.413 | 184 | 56 | 5 | 4 | 182 | 2 | 175 | 4.40e-65 | 197 |
| MS.gene52589.t1 | AT3G51030 | 43.421 | 76 | 38 | 2 | 101 | 172 | 31 | 105 | 1.18e-13 | 64.7 |
| MS.gene52589.t1 | AT5G42980 | 34.940 | 83 | 49 | 2 | 99 | 177 | 28 | 109 | 6.62e-13 | 62.8 |
| MS.gene52589.t1 | AT5G39950 | 37.079 | 89 | 49 | 3 | 98 | 181 | 47 | 133 | 2.61e-12 | 61.6 |
| MS.gene52589.t1 | AT1G45145 | 34.615 | 78 | 46 | 2 | 99 | 172 | 28 | 104 | 3.71e-12 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTAATTCTTTGTATTT+TGG | 0.153277 | 7.4:+25968977 | None:intergenic |
| AGAATTAGCTGAGAAGTATT+TGG | 0.241894 | 7.4:-25968966 | MS.gene52589:CDS |
| AACACTCTTGGAATTCAAAA+TGG | 0.249767 | 7.4:+25971157 | None:intergenic |
| ATCTCTGCACCTCCCCTAAA+TGG | 0.258474 | 7.4:-25971262 | MS.gene52589:CDS |
| CACCTTAATTCCTAACTCTT+TGG | 0.260746 | 7.4:+25968806 | None:intergenic |
| GGCCAAAGAGTTAGGAATTA+AGG | 0.288804 | 7.4:-25968808 | MS.gene52589:CDS |
| CAGCCCTTGGCCAAAGAGTT+AGG | 0.330209 | 7.4:-25968816 | MS.gene52589:CDS |
| TGGAGCTAAATATGATGATT+TGG | 0.335332 | 7.4:-25968733 | MS.gene52589:CDS |
| ACATCCATACCTTGTTATCT+TGG | 0.339097 | 7.4:+25968915 | None:intergenic |
| ACGGTGGTGCCAATCCATTT+AGG | 0.358436 | 7.4:+25971248 | None:intergenic |
| CGGTGGTGCCAATCCATTTA+GGG | 0.375482 | 7.4:+25971249 | None:intergenic |
| AAGGTTGTAAAAGAAGTAAC+TGG | 0.408021 | 7.4:-25968753 | MS.gene52589:CDS |
| GCTCTTGAGATTAACACTCT+TGG | 0.426875 | 7.4:+25971145 | None:intergenic |
| TTTCTGTGTAAGATCAAGCT+TGG | 0.488878 | 7.4:-25971099 | MS.gene52589:CDS |
| AGATTAAGAGCCATTGGTGT+TGG | 0.490679 | 7.4:+25971281 | None:intergenic |
| AATTCCTAACTCTTTGGCCA+AGG | 0.501915 | 7.4:+25968812 | None:intergenic |
| ACTGGCCCCACCGTGACGGT+TGG | 0.511801 | 7.4:-25971071 | MS.gene52589:CDS |
| AGATCAAGCTTGGAAACTAC+TGG | 0.514531 | 7.4:-25971089 | MS.gene52589:CDS |
| TTTGGAGCTATCACTTTGCA+AGG | 0.518801 | 7.4:+25968995 | None:intergenic |
| GCTAGAACGAACTGTGTCAA+TGG | 0.520040 | 7.4:+25968704 | None:intergenic |
| ATTCCTAACTCTTTGGCCAA+GGG | 0.525071 | 7.4:+25968813 | None:intergenic |
| AGCTTAAGCTTGAGGAAGAG+TGG | 0.529887 | 7.4:-25971125 | MS.gene52589:CDS |
| ATCTCAAGAGCTTAAGCTTG+AGG | 0.533549 | 7.4:-25971133 | MS.gene52589:CDS |
| TGCACCTCCCCTAAATGGAT+TGG | 0.536322 | 7.4:-25971257 | MS.gene52589:CDS |
| GTGCAGAGATTAAGAGCCAT+TGG | 0.539401 | 7.4:+25971275 | None:intergenic |
| TCACCGGCGGCATTAACGAT+GGG | 0.558656 | 7.4:+25971014 | None:intergenic |
| ATCACCGGCGGCATTAACGA+TGG | 0.564737 | 7.4:+25971013 | None:intergenic |
| GCTTAAGCTTGAGGAAGAGT+GGG | 0.565601 | 7.4:-25971124 | MS.gene52589:CDS |
| TGGCCCATCGTTAATGCCGC+CGG | 0.576314 | 7.4:-25971017 | MS.gene52589:CDS |
| AACTACTGGCCCCACCGTGA+CGG | 0.577342 | 7.4:-25971075 | MS.gene52589:CDS |
| AAGTTAACAAGGATACGTTC+TGG | 0.581922 | 7.4:-25971037 | MS.gene52589:CDS |
| TCTCCACATGCCAACACCAA+TGG | 0.584573 | 7.4:-25971291 | None:intergenic |
| TCTTCATCGAAGCTATCACT+TGG | 0.591272 | 7.4:-25971212 | MS.gene52589:CDS |
| ACTTGTCCAACCGTCACGGT+GGG | 0.599149 | 7.4:+25971065 | None:intergenic |
| AACTTGTCCAACCGTCACGG+TGG | 0.625736 | 7.4:+25971064 | None:intergenic |
| TAAAATTCTGAAAGACAACA+AGG | 0.632667 | 7.4:-25968772 | MS.gene52589:CDS |
| CTTGTCCAACCGTCACGGTG+GGG | 0.634010 | 7.4:+25971066 | None:intergenic |
| CAAAGAGTTAGGAATTAAGG+TGG | 0.637379 | 7.4:-25968805 | MS.gene52589:CDS |
| GGTGGTGCCAATCCATTTAG+GGG | 0.641245 | 7.4:+25971250 | None:intergenic |
| ACAAGTTACTGAAGTTAACA+AGG | 0.643513 | 7.4:-25971048 | MS.gene52589:CDS |
| TGAAGAAGTACTGTCAAAGA+CGG | 0.651199 | 7.4:+25971229 | None:intergenic |
| AGTAACTTGTCCAACCGTCA+CGG | 0.658820 | 7.4:+25971061 | None:intergenic |
| TGATTGCAACCAAGATAACA+AGG | 0.674067 | 7.4:-25968924 | MS.gene52589:intron |
| GGTGCCAATCCATTTAGGGG+AGG | 0.674114 | 7.4:+25971253 | None:intergenic |
| GGTGTACATGTCGAGCACGA+CGG | 0.678425 | 7.4:+25970986 | None:intergenic |
| AGAAGTACTGTCAAAGACGG+TGG | 0.735659 | 7.4:+25971232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATCAATCT+CGG | - | chr7.4:25970828-25970847 | MS.gene52589:intron | 10.0% |
| !!! | ATTTTCATAATTTATGAATA+TGG | - | chr7.4:25969843-25969862 | MS.gene52589:intron | 10.0% |
| !! | AATGAAATAAAATATACCAT+TGG | + | chr7.4:25969024-25969043 | None:intergenic | 15.0% |
| !! | ATGAAATAAAATATACCATT+GGG | + | chr7.4:25969023-25969042 | None:intergenic | 15.0% |
| !! | AACTTAATTAAAGACAAAGT+GGG | - | chr7.4:25970354-25970373 | MS.gene52589:intron | 20.0% |
| !! | ATCATGATAAGAATAGTTAA+TGG | + | chr7.4:25969072-25969091 | None:intergenic | 20.0% |
| !!! | AAAATTTTGTATGTGATATC+TGG | + | chr7.4:25969828-25969847 | None:intergenic | 20.0% |
| !!! | ACTGTTAATTTTCTAATGAA+CGG | - | chr7.4:25970261-25970280 | MS.gene52589:intron | 20.0% |
| !!! | AGTTCTCTAAATATGTTTTA+TGG | - | chr7.4:25969613-25969632 | MS.gene52589:intron | 20.0% |
| !!! | ATGATTTGGTAAACTATAAT+TGG | - | chr7.4:25969660-25969679 | MS.gene52589:intron | 20.0% |
| !!! | TACTAATGTACTTATTTTGT+AGG | - | chr7.4:25970390-25970409 | MS.gene52589:intron | 20.0% |
| !!! | TCTTTCAGAATTTTAAAAGT+GGG | + | chr7.4:25971208-25971227 | None:intergenic | 20.0% |
| ! | AAAGTACATTATACGAAGAA+GGG | - | chr7.4:25970129-25970148 | MS.gene52589:intron | 25.0% |
| ! | AAGTTATCTGAAAGAGTTTA+CGG | - | chr7.4:25969509-25969528 | MS.gene52589:intron | 25.0% |
| ! | ACACAGTATTTAATGGTTAT+TGG | - | chr7.4:25971146-25971165 | MS.gene52589:CDS | 25.0% |
| ! | AGAGGTAACATTATGAAATT+TGG | + | chr7.4:25969913-25969932 | None:intergenic | 25.0% |
| ! | ATTAAACAGTAGATAGTCTA+TGG | - | chr7.4:25971101-25971120 | MS.gene52589:CDS | 25.0% |
| ! | CAATTAAGCATCATACTTAT+TGG | - | chr7.4:25970488-25970507 | MS.gene52589:intron | 25.0% |
| ! | GAACTTAATTAAAGACAAAG+TGG | - | chr7.4:25970353-25970372 | MS.gene52589:intron | 25.0% |
| ! | GTAATATGATTTGAGCTTTA+TGG | - | chr7.4:25969590-25969609 | MS.gene52589:intron | 25.0% |
| ! | GTTGAGTAAAAATGAAAACA+GGG | + | chr7.4:25969741-25969760 | None:intergenic | 25.0% |
| ! | TGTTACTAGTTAATTTCACT+CGG | - | chr7.4:25969770-25969789 | MS.gene52589:intron | 25.0% |
| ! | TTCATGATAAATCATATCCA+AGG | + | chr7.4:25970955-25970974 | None:intergenic | 25.0% |
| !! | AAAAGTACATTATACGAAGA+AGG | - | chr7.4:25970128-25970147 | MS.gene52589:intron | 25.0% |
| !! | CTGTTAATTTTCTAATGAAC+GGG | - | chr7.4:25970262-25970281 | MS.gene52589:intron | 25.0% |
| !! | CTTATCATCATAAACCATTT+TGG | + | chr7.4:25969492-25969511 | None:intergenic | 25.0% |
| !! | TAAAATTCTGAAAGACAACA+AGG | - | chr7.4:25971213-25971232 | MS.gene52589:CDS | 25.0% |
| !! | TCAGCTAATTCTTTGTATTT+TGG | + | chr7.4:25971011-25971030 | None:intergenic | 25.0% |
| !! | TGATTTATCATGAATTTTGC+AGG | - | chr7.4:25970961-25970980 | MS.gene52589:intron | 25.0% |
| !!! | GTCTTTCAGAATTTTAAAAG+TGG | + | chr7.4:25971209-25971228 | None:intergenic | 25.0% |
| !!! | TGTTTTAGCAAGTAATGATT+TGG | - | chr7.4:25969646-25969665 | MS.gene52589:intron | 25.0% |
| !!! | TTGCAGCAATGATTATTTTA+AGG | - | chr7.4:25970858-25970877 | MS.gene52589:intron | 25.0% |
| AAAAAGAAGAGGTAATACAC+TGG | - | chr7.4:25970326-25970345 | MS.gene52589:intron | 30.0% | |
| AAATAAAATCAATCTCGGTG+TGG | - | chr7.4:25970833-25970852 | MS.gene52589:intron | 30.0% | |
| AACACTCTTGGAATTCAAAA+TGG | + | chr7.4:25968831-25968850 | None:intergenic | 30.0% | |
| AACAGTTGAGAAACAATCAA+GGG | - | chr7.4:25970209-25970228 | MS.gene52589:intron | 30.0% | |
| AAGGTTGTAAAAGAAGTAAC+TGG | - | chr7.4:25971232-25971251 | MS.gene52589:CDS | 30.0% | |
| ACAAGTTACTGAAGTTAACA+AGG | - | chr7.4:25968937-25968956 | MS.gene52589:CDS | 30.0% | |
| ACCAATCAATTAGAGAATGA+GGG | - | chr7.4:25969456-25969475 | MS.gene52589:intron | 30.0% | |
| ATCATATCTCTACATAAGTG+AGG | - | chr7.4:25970078-25970097 | MS.gene52589:intron | 30.0% | |
| ATGTACTTGTAGCTAAATCA+GGG | - | chr7.4:25970561-25970580 | MS.gene52589:intron | 30.0% | |
| ATGTCAGTATTCTCTAAGTT+TGG | + | chr7.4:25969428-25969447 | None:intergenic | 30.0% | |
| CAGTGATAACAATGTCATTA+AGG | + | chr7.4:25970902-25970921 | None:intergenic | 30.0% | |
| GGTTGAGTAAAAATGAAAAC+AGG | + | chr7.4:25969742-25969761 | None:intergenic | 30.0% | |
| TAACAGTTGAGAAACAATCA+AGG | - | chr7.4:25970208-25970227 | MS.gene52589:intron | 30.0% | |
| TAAGATGCTAATATACTCTG+AGG | - | chr7.4:25969197-25969216 | MS.gene52589:intron | 30.0% | |
| TGGAGCTAAATATGATGATT+TGG | - | chr7.4:25971252-25971271 | MS.gene52589:CDS | 30.0% | |
| TTAGCTTACAGAAGAGTAAT+TGG | - | chr7.4:25970624-25970643 | MS.gene52589:intron | 30.0% | |
| TTCTCTAAGTTTGGTTGAAT+AGG | + | chr7.4:25969419-25969438 | None:intergenic | 30.0% | |
| TTTGTAGGCTGATTATCAAA+AGG | - | chr7.4:25970405-25970424 | MS.gene52589:intron | 30.0% | |
| ! | AAAGGGTTTTCTCTTAACTA+AGG | - | chr7.4:25970156-25970175 | MS.gene52589:intron | 30.0% |
| ! | AAGGGTTTTCTCTTAACTAA+GGG | - | chr7.4:25970157-25970176 | MS.gene52589:intron | 30.0% |
| !! | AGAATTAGCTGAGAAGTATT+TGG | - | chr7.4:25971019-25971038 | MS.gene52589:CDS | 30.0% |
| AACAATAATAGAGCTAGCCA+GGG | - | chr7.4:25969300-25969319 | MS.gene52589:intron | 35.0% | |
| AAGTTAACAAGGATACGTTC+TGG | - | chr7.4:25968948-25968967 | MS.gene52589:CDS | 35.0% | |
| AAGTTTGGTTGAATAGGTGT+CGG | + | chr7.4:25969413-25969432 | None:intergenic | 35.0% | |
| ACAAGGTATGGATGTAATAG+TGG | - | chr7.4:25971078-25971097 | MS.gene52589:CDS | 35.0% | |
| ACCCTCATTCTCTAATTGAT+TGG | + | chr7.4:25969460-25969479 | None:intergenic | 35.0% | |
| AGGGAGATAGATATATAGAG+AGG | + | chr7.4:25969931-25969950 | None:intergenic | 35.0% | |
| ATAAAGCGCAGTTGAAAACA+GGG | + | chr7.4:25969950-25969969 | None:intergenic | 35.0% | |
| ATATGACTCGTGAGTGTTAT+TGG | - | chr7.4:25970677-25970696 | MS.gene52589:intron | 35.0% | |
| ATCCTTGAGGTAAAAAGAAG+AGG | - | chr7.4:25970315-25970334 | MS.gene52589:intron | 35.0% | |
| CAAAGAGTTAGGAATTAAGG+TGG | - | chr7.4:25971180-25971199 | MS.gene52589:CDS | 35.0% | |
| CACCTTAATTCCTAACTCTT+TGG | + | chr7.4:25971182-25971201 | None:intergenic | 35.0% | |
| CACTGCTGCTAAATATAAAG+TGG | - | chr7.4:25970917-25970936 | MS.gene52589:intron | 35.0% | |
| CTATGATATGTGCATAAGAG+TGG | - | chr7.4:25970647-25970666 | MS.gene52589:intron | 35.0% | |
| CTCTTAACTAAGGGGTTTAT+TGG | - | chr7.4:25970166-25970185 | MS.gene52589:intron | 35.0% | |
| GACCAATCAATTAGAGAATG+AGG | - | chr7.4:25969455-25969474 | MS.gene52589:intron | 35.0% | |
| GATGCTTAATTGTATGCCAA+AGG | + | chr7.4:25970480-25970499 | None:intergenic | 35.0% | |
| GATGTACTTGTAGCTAAATC+AGG | - | chr7.4:25970560-25970579 | MS.gene52589:intron | 35.0% | |
| GTCCATTGATCAGTATATCT+CGG | - | chr7.4:25969794-25969813 | MS.gene52589:intron | 35.0% | |
| GTTCAAGACAAATCTCTTCA+AGG | - | chr7.4:25970100-25970119 | MS.gene52589:intron | 35.0% | |
| GTTTAGCAAAGACCAATTCA+CGG | - | chr7.4:25970520-25970539 | MS.gene52589:intron | 35.0% | |
| TACATTATACGAAGAAGGGT+GGG | - | chr7.4:25970133-25970152 | MS.gene52589:intron | 35.0% | |
| TGATTGCAACCAAGATAACA+AGG | - | chr7.4:25971061-25971080 | MS.gene52589:CDS | 35.0% | |
| TGGACTGACACAGTATTTAA+TGG | - | chr7.4:25971139-25971158 | MS.gene52589:CDS | 35.0% | |
| TGTACTTGTAGCTAAATCAG+GGG | - | chr7.4:25970562-25970581 | MS.gene52589:intron | 35.0% | |
| TTAACTAGTAACACTGTGCA+AGG | + | chr7.4:25969763-25969782 | None:intergenic | 35.0% | |
| TTTCTGTGTAAGATCAAGCT+TGG | - | chr7.4:25968886-25968905 | MS.gene52589:intron | 35.0% | |
| ! | ACATCCATACCTTGTTATCT+TGG | + | chr7.4:25971073-25971092 | None:intergenic | 35.0% |
| ! | AGGGTTTTCTCTTAACTAAG+GGG | - | chr7.4:25970158-25970177 | MS.gene52589:intron | 35.0% |
| ! | ATGTTGTTTAGTGACACGTT+GGG | + | chr7.4:25970047-25970066 | None:intergenic | 35.0% |
| ! | TACCTCTTCTTTTTACCTCA+AGG | + | chr7.4:25970320-25970339 | None:intergenic | 35.0% |
| ! | TATCATGAATTTTGCAGGTG+TGG | - | chr7.4:25970966-25970985 | MS.gene52589:intron | 35.0% |
| ! | TATGACTCGTGAGTGTTATT+GGG | - | chr7.4:25970678-25970697 | MS.gene52589:intron | 35.0% |
| ! | TGTGAGTGTTGTAAACTCTA+GGG | - | chr7.4:25970782-25970801 | MS.gene52589:intron | 35.0% |
| ! | TTTGAAGCTTTCAACCAGAT+TGG | + | chr7.4:25970452-25970471 | None:intergenic | 35.0% |
| !! | TGAAGAAGTACTGTCAAAGA+CGG | + | chr7.4:25968759-25968778 | None:intergenic | 35.0% |
| AACTAAGGGGTTTATTGGAG+TGG | - | chr7.4:25970171-25970190 | MS.gene52589:intron | 40.0% | |
| AATTAGAGAATGAGGGTCGA+AGG | - | chr7.4:25969463-25969482 | MS.gene52589:intron | 40.0% | |
| AATTCCTAACTCTTTGGCCA+AGG | + | chr7.4:25971176-25971195 | None:intergenic | 40.0% | |
| AGATCAAGCTTGGAAACTAC+TGG | - | chr7.4:25968896-25968915 | MS.gene52589:intron | 40.0% | |
| AGATTAAGAGCCATTGGTGT+TGG | + | chr7.4:25968707-25968726 | None:intergenic | 40.0% | |
| AGCATTCATGCTTTCCAATC+TGG | - | chr7.4:25970435-25970454 | MS.gene52589:intron | 40.0% | |
| AGTGGAGATCTAGATAACCT+TGG | - | chr7.4:25970935-25970954 | MS.gene52589:intron | 40.0% | |
| ATCAGTATATCTCGGTGACA+TGG | - | chr7.4:25969802-25969821 | MS.gene52589:intron | 40.0% | |
| ATCTCAAGAGCTTAAGCTTG+AGG | - | chr7.4:25968852-25968871 | MS.gene52589:intron | 40.0% | |
| ATGATTAACGTCGCAACGTT+AGG | - | chr7.4:25969351-25969370 | MS.gene52589:intron | 40.0% | |
| ATTCCTAACTCTTTGGCCAA+GGG | + | chr7.4:25971175-25971194 | None:intergenic | 40.0% | |
| CAACGTTAGGTAGAAGTTCA+GGG | - | chr7.4:25969364-25969383 | MS.gene52589:intron | 40.0% | |
| CAATTCACGGTGTAGTCTTT+AGG | - | chr7.4:25970533-25970552 | MS.gene52589:intron | 40.0% | |
| CACCGAGATATACTGATCAA+TGG | + | chr7.4:25969799-25969818 | None:intergenic | 40.0% | |
| CATAAAGCGCAGTTGAAAAC+AGG | + | chr7.4:25969951-25969970 | None:intergenic | 40.0% | |
| CTAAAGACTACACCGTGAAT+TGG | + | chr7.4:25970535-25970554 | None:intergenic | 40.0% | |
| CTGGTTGAAAGCTTCAAAGT+TGG | - | chr7.4:25970454-25970473 | MS.gene52589:intron | 40.0% | |
| GAACAATAATAGAGCTAGCC+AGG | - | chr7.4:25969299-25969318 | MS.gene52589:intron | 40.0% | |
| GCAACCAAGATAACAAGGTA+TGG | - | chr7.4:25971066-25971085 | MS.gene52589:CDS | 40.0% | |
| GCGCTTTATGAAGTCTGTAT+AGG | - | chr7.4:25969961-25969980 | MS.gene52589:intron | 40.0% | |
| GCTCTTGAGATTAACACTCT+TGG | + | chr7.4:25968843-25968862 | None:intergenic | 40.0% | |
| GGCCAAAGAGTTAGGAATTA+AGG | - | chr7.4:25971177-25971196 | MS.gene52589:CDS | 40.0% | |
| GTACATTATACGAAGAAGGG+TGG | - | chr7.4:25970132-25970151 | MS.gene52589:intron | 40.0% | |
| GTACTTGTAGCTAAATCAGG+GGG | - | chr7.4:25970563-25970582 | MS.gene52589:intron | 40.0% | |
| TATGGTTGCTCATGCTTTCT+TGG | - | chr7.4:25971119-25971138 | MS.gene52589:CDS | 40.0% | |
| TCTTCATCGAAGCTATCACT+TGG | - | chr7.4:25968773-25968792 | MS.gene52589:CDS | 40.0% | |
| ! | AGCTCTAGCTGTATGAAACA+AGG | + | chr7.4:25969150-25969169 | None:intergenic | 40.0% |
| ! | AGCTGATATTTCAGGTACTG+GGG | - | chr7.4:25970730-25970749 | MS.gene52589:intron | 40.0% |
| ! | CAGCTGATATTTCAGGTACT+GGG | - | chr7.4:25970729-25970748 | MS.gene52589:intron | 40.0% |
| ! | GAAGAGGTAATACACTGGTT+CGG | - | chr7.4:25970331-25970350 | MS.gene52589:intron | 40.0% |
| ! | GATGTTGTTTAGTGACACGT+TGG | + | chr7.4:25970048-25970067 | None:intergenic | 40.0% |
| ! | GTGTGAGTGTTGTAAACTCT+AGG | - | chr7.4:25970781-25970800 | MS.gene52589:intron | 40.0% |
| ! | TTTGGAGCTATCACTTTGCA+AGG | + | chr7.4:25970993-25971012 | None:intergenic | 40.0% |
| !! | AAAGCTTCAAAGTTGGCCTT+TGG | - | chr7.4:25970461-25970480 | MS.gene52589:intron | 40.0% |
| !! | ATACAGCTAGAGCTAGCTTT+AGG | - | chr7.4:25969156-25969175 | MS.gene52589:intron | 40.0% |
| !! | TAGGTGTCGGTATCATTATC+AGG | + | chr7.4:25969400-25969419 | None:intergenic | 40.0% |
| AGCTTAAGCTTGAGGAAGAG+TGG | - | chr7.4:25968860-25968879 | MS.gene52589:intron | 45.0% | |
| ATACGAAGAAGGGTGGGAAA+GGG | - | chr7.4:25970139-25970158 | MS.gene52589:intron | 45.0% | |
| CAGCTGGCTGATCACTATTT+AGG | + | chr7.4:25970715-25970734 | None:intergenic | 45.0% | |
| CCAGTACCTGAAATATCAGC+TGG | + | chr7.4:25970731-25970750 | None:intergenic | 45.0% | |
| GATCAGCCAGCTGATATTTC+AGG | - | chr7.4:25970722-25970741 | MS.gene52589:intron | 45.0% | |
| GCAACGTTAGGTAGAAGTTC+AGG | - | chr7.4:25969363-25969382 | MS.gene52589:intron | 45.0% | |
| GCTAGAACGAACTGTGTCAA+TGG | + | chr7.4:25971284-25971303 | None:intergenic | 45.0% | |
| GCTTAAGCTTGAGGAAGAGT+GGG | - | chr7.4:25968861-25968880 | MS.gene52589:intron | 45.0% | |
| GTGCAGAGATTAAGAGCCAT+TGG | + | chr7.4:25968713-25968732 | None:intergenic | 45.0% | |
| TAATGGTTATTGGCAGCCCT+TGG | - | chr7.4:25971156-25971175 | MS.gene52589:CDS | 45.0% | |
| TATACGAAGAAGGGTGGGAA+AGG | - | chr7.4:25970138-25970157 | MS.gene52589:intron | 45.0% | |
| TGAGTGATAGACACTTTCCC+TGG | + | chr7.4:25969320-25969339 | None:intergenic | 45.0% | |
| TTGTTTAGTGACACGTTGGG+AGG | + | chr7.4:25970044-25970063 | None:intergenic | 45.0% | |
| ! | AGTAACTTGTCCAACCGTCA+CGG | + | chr7.4:25968927-25968946 | None:intergenic | 45.0% |
| ! | CCAGCTGATATTTCAGGTAC+TGG | - | chr7.4:25970728-25970747 | MS.gene52589:intron | 45.0% |
| !! | AGAAGTACTGTCAAAGACGG+TGG | + | chr7.4:25968756-25968775 | None:intergenic | 45.0% |
| !! | AGGGTCGAAGGTATCCAAAA+TGG | - | chr7.4:25969475-25969494 | MS.gene52589:intron | 45.0% |
| !! | TGCTATGAAGAGCATCCTTG+AGG | - | chr7.4:25970302-25970321 | MS.gene52589:intron | 45.0% |
| !!! | ATTTTATTTTATTTTTTAGT+AGG | + | chr7.4:25970822-25970841 | None:intergenic | 5.0% |
| ATCTCTGCACCTCCCCTAAA+TGG | - | chr7.4:25968723-25968742 | MS.gene52589:CDS | 50.0% | |
| TGCACCTCCCCTAAATGGAT+TGG | - | chr7.4:25968728-25968747 | MS.gene52589:CDS | 50.0% | |
| TGCTCGACATGTACACCCAA+TGG | - | chr7.4:25969005-25969024 | MS.gene52589:CDS | 50.0% | |
| TGGGGTCTAGTGCAAGTAGT+TGG | - | chr7.4:25970748-25970767 | MS.gene52589:intron | 50.0% | |
| ! | ACGGTGGTGCCAATCCATTT+AGG | + | chr7.4:25968740-25968759 | None:intergenic | 50.0% |
| ! | CGGTGGTGCCAATCCATTTA+GGG | + | chr7.4:25968739-25968758 | None:intergenic | 50.0% |
| ! | GGTGGTGCCAATCCATTTAG+GGG | + | chr7.4:25968738-25968757 | None:intergenic | 50.0% |
| !! | GAGCACGACGGTTTTATCAC+CGG | + | chr7.4:25968990-25969009 | None:intergenic | 50.0% |
| AACTTGTCCAACCGTCACGG+TGG | + | chr7.4:25968924-25968943 | None:intergenic | 55.0% | |
| ACTTGTCCAACCGTCACGGT+GGG | + | chr7.4:25968923-25968942 | None:intergenic | 55.0% | |
| ATCACCGGCGGCATTAACGA+TGG | + | chr7.4:25968975-25968994 | None:intergenic | 55.0% | |
| CAGCCCTTGGCCAAAGAGTT+AGG | - | chr7.4:25971169-25971188 | MS.gene52589:CDS | 55.0% | |
| GGTGCCAATCCATTTAGGGG+AGG | + | chr7.4:25968735-25968754 | None:intergenic | 55.0% | |
| GGTGTACATGTCGAGCACGA+CGG | + | chr7.4:25969002-25969021 | None:intergenic | 55.0% | |
| TCACCGGCGGCATTAACGAT+GGG | + | chr7.4:25968974-25968993 | None:intergenic | 55.0% | |
| !! | CACGACGGTTTTATCACCGG+CGG | + | chr7.4:25968987-25969006 | None:intergenic | 55.0% |
| AACTACTGGCCCCACCGTGA+CGG | - | chr7.4:25968910-25968929 | MS.gene52589:intron | 60.0% | |
| CTTGTCCAACCGTCACGGTG+GGG | + | chr7.4:25968922-25968941 | None:intergenic | 60.0% | |
| TGGCCCATCGTTAATGCCGC+CGG | - | chr7.4:25968968-25968987 | MS.gene52589:CDS | 60.0% | |
| ACTGGCCCCACCGTGACGGT+TGG | - | chr7.4:25968914-25968933 | MS.gene52589:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25968701 | 25971306 | 25968701 | ID=MS.gene52589 |
| chr7.4 | mRNA | 25968701 | 25971306 | 25968701 | ID=MS.gene52589.t1;Parent=MS.gene52589 |
| chr7.4 | exon | 25970993 | 25971306 | 25970993 | ID=MS.gene52589.t1.exon1;Parent=MS.gene52589.t1 |
| chr7.4 | CDS | 25970993 | 25971306 | 25970993 | ID=cds.MS.gene52589.t1;Parent=MS.gene52589.t1 |
| chr7.4 | exon | 25968925 | 25969024 | 25968925 | ID=MS.gene52589.t1.exon2;Parent=MS.gene52589.t1 |
| chr7.4 | CDS | 25968925 | 25969024 | 25968925 | ID=cds.MS.gene52589.t1;Parent=MS.gene52589.t1 |
| chr7.4 | exon | 25968701 | 25968835 | 25968701 | ID=MS.gene52589.t1.exon3;Parent=MS.gene52589.t1 |
| chr7.4 | CDS | 25968701 | 25968835 | 25968701 | ID=cds.MS.gene52589.t1;Parent=MS.gene52589.t1 |
| Gene Sequence |
| Protein sequence |
