Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52593.t1 | XP_003624198.2 | 98.2 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 1.70E-82 | 316.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52593.t1 | O82251 | 51.5 | 165 | 72 | 2 | 1 | 162 | 1 | 160 | 2.5e-34 | 147.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52593.t1 | G7KRK7 | 98.2 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 1.2e-82 | 316.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene52593 | -0.80183 | 7.48E-49 | -1.69E-46 |
| MS.gene057148 | MS.gene52593 | 0.817321 | 3.50E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52593.t1 | MTR_7g080300 | 98.171 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 8.73e-112 | 322 |
| MS.gene52593.t1 | MTR_5g095770 | 41.290 | 155 | 87 | 3 | 18 | 169 | 23 | 176 | 1.14e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52593.t1 | AT2G47840 | 51.515 | 165 | 72 | 2 | 1 | 162 | 1 | 160 | 1.11e-44 | 151 |
| MS.gene52593.t1 | AT5G55710 | 47.664 | 107 | 55 | 1 | 59 | 165 | 59 | 164 | 6.19e-26 | 102 |
Find 90 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGCAGTTCTGAGTTTA+AGG | 0.086982 | 7.4:-25938040 | MS.gene52593:intron |
| ATGATTTATGGATTAAAATT+TGG | 0.139161 | 7.4:-25938011 | MS.gene52593:CDS |
| TTAAGGAATCTCATGATTTA+TGG | 0.155936 | 7.4:-25938023 | MS.gene52593:CDS |
| TAGGGTTAGGGTTGAGGATT+TGG | 0.168614 | 7.4:+25939521 | None:intergenic |
| AGGGTTAGGGTTGAGGATTT+GGG | 0.198298 | 7.4:+25939522 | None:intergenic |
| CGCGTTCTTCGCGCTTTACT+TGG | 0.229159 | 7.4:-25939232 | MS.gene52593:CDS |
| TTTGAGTGATGGTGGGGTTA+AGG | 0.270194 | 7.4:+25939467 | None:intergenic |
| AATATACGGCATTGAGGATA+TGG | 0.287874 | 7.4:-25938232 | MS.gene52593:CDS |
| AATGAAAGGGAATTGGGTTT+TGG | 0.297041 | 7.4:+25939495 | None:intergenic |
| TCGAAAAGGAGTGCGACTTT+AGG | 0.305665 | 7.4:+25939309 | None:intergenic |
| TATCCTCAATGCCGTATATT+AGG | 0.306755 | 7.4:+25938235 | None:intergenic |
| CGAAAAGGAGTGCGACTTTA+GGG | 0.326657 | 7.4:+25939310 | None:intergenic |
| GGGTTAGGGTTGAGGATTTG+GGG | 0.333730 | 7.4:+25939523 | None:intergenic |
| TTGAGTGATGGTGGGGTTAA+GGG | 0.345958 | 7.4:+25939468 | None:intergenic |
| AAAGAGAGGAAAGGGATGAT+TGG | 0.362932 | 7.4:+25939285 | None:intergenic |
| GGGTGAGAATGAAAGGGAAT+TGG | 0.363246 | 7.4:+25939488 | None:intergenic |
| TCTGACATTAGATGTGCTTC+TGG | 0.365125 | 7.4:-25939154 | MS.gene52593:CDS |
| TCTCCTGGGAGATATGGATT+AGG | 0.379357 | 7.4:-25939102 | MS.gene52593:intron |
| ATCTATAGAAAGAGAGGAAA+GGG | 0.392520 | 7.4:+25939277 | None:intergenic |
| TTTCAGTGGCTCGCGATTCA+TGG | 0.398074 | 7.4:-25937958 | MS.gene52593:CDS |
| GGTGAGAATGAAAGGGAATT+GGG | 0.412380 | 7.4:+25939489 | None:intergenic |
| GCTATTGAGATTAACCGTTC+TGG | 0.416946 | 7.4:+25939393 | None:intergenic |
| CTAGGAGCAGGGGTCGTGAT+AGG | 0.420431 | 7.4:+25937458 | None:intergenic |
| CCGTTCTGGTGCAGCGGGTG+TGG | 0.425454 | 7.4:+25939407 | None:intergenic |
| GCAAAAGTTGCAGACCTTGT+TGG | 0.426152 | 7.4:-25938180 | MS.gene52593:CDS |
| AATGGAGTAGGGACTGTGAC+AGG | 0.430683 | 7.4:+25937377 | None:intergenic |
| AAGAGAGGAAAGGGATGATT+GGG | 0.445801 | 7.4:+25939286 | None:intergenic |
| TGCAGCGGGTGTGGATGTGC+TGG | 0.452850 | 7.4:+25939416 | None:intergenic |
| TCAGCAACAAAAGGCAAGTA+AGG | 0.454318 | 7.4:+25938985 | None:intergenic |
| AAGATCATATGATAGATGAT+AGG | 0.455337 | 7.4:-25938941 | MS.gene52593:CDS |
| TTCTTCAATTCCCTTCAATA+CGG | 0.460547 | 7.4:-25939354 | MS.gene52593:CDS |
| GGTTAGGGTTGAGGATTTGG+GGG | 0.473050 | 7.4:+25939524 | None:intergenic |
| GCGTTCTTCGCGCTTTACTT+GGG | 0.478065 | 7.4:-25939231 | MS.gene52593:CDS |
| CTGAGTTTGAGTTTGAGTGA+TGG | 0.484633 | 7.4:+25939456 | None:intergenic |
| GGGTTAAGGGTGAGAATGAA+AGG | 0.486254 | 7.4:+25939481 | None:intergenic |
| CATTGTCTCGCCCTCACTCA+TGG | 0.488811 | 7.4:-25937432 | MS.gene52593:CDS |
| AGTGGATCGAGCCTAATATA+CGG | 0.490123 | 7.4:-25938246 | MS.gene52593:CDS |
| CTATCACGACCCCTGCTCCT+AGG | 0.494735 | 7.4:-25937457 | MS.gene52593:CDS |
| AAGGGATGATTGGGTCGAAA+AGG | 0.496802 | 7.4:+25939295 | None:intergenic |
| CGCTTTACTTGGGAATCGTA+AGG | 0.497431 | 7.4:-25939221 | MS.gene52593:CDS |
| AGTTTGAGTTTGAGTGATGG+TGG | 0.499290 | 7.4:+25939459 | None:intergenic |
| ACAAGTCAAAAGAATGGAGT+AGG | 0.502472 | 7.4:+25937365 | None:intergenic |
| CTCAAACTCAAACTCAGAAA+CGG | 0.504515 | 7.4:-25939450 | MS.gene52593:CDS |
| ATTAACCGTTCTGGTGCAGC+GGG | 0.508710 | 7.4:+25939402 | None:intergenic |
| GGAGGGATCTATAGAAAGAG+AGG | 0.516024 | 7.4:+25939271 | None:intergenic |
| GTTTGAGTTTGAGTGATGGT+GGG | 0.521464 | 7.4:+25939460 | None:intergenic |
| CATGGCCCTCACAACGTACA+TGG | 0.522517 | 7.4:-25937414 | MS.gene52593:CDS |
| GCAGCAGCATCAGCAACAAA+AGG | 0.524058 | 7.4:+25938976 | None:intergenic |
| GAGACAATGATCCTAGGAGC+AGG | 0.525666 | 7.4:+25937446 | None:intergenic |
| GGAAATTTCAAGTTCAAGAG+AGG | 0.528464 | 7.4:-25937990 | MS.gene52593:CDS |
| AACGCGATGAACGACGCGTA+AGG | 0.529024 | 7.4:+25939249 | None:intergenic |
| ACTGTGACAGGGAGCTGAGG+AGG | 0.535172 | 7.4:+25937389 | None:intergenic |
| GATCTATAGAAAGAGAGGAA+AGG | 0.539602 | 7.4:+25939276 | None:intergenic |
| TTCTTCCGATGCTGTTTCAG+AGG | 0.540592 | 7.4:-25939131 | MS.gene52593:CDS |
| ATATATACAAGTCAAAAGAA+TGG | 0.540742 | 7.4:+25937359 | None:intergenic |
| TTTGAGTTTGAGTGATGGTG+GGG | 0.542463 | 7.4:+25939461 | None:intergenic |
| CTGTGACAGGGAGCTGAGGA+GGG | 0.544394 | 7.4:+25937390 | None:intergenic |
| TGTTAGATTCAATGCTATGC+AGG | 0.547502 | 7.4:-25939178 | MS.gene52593:CDS |
| TATTGAAGGGAATTGAAGAA+TGG | 0.550473 | 7.4:+25939357 | None:intergenic |
| AGTGGCTCGCGATTCATGGT+AGG | 0.553902 | 7.4:-25937954 | MS.gene52593:intron |
| GAATGTTGTGACCGTATTGA+AGG | 0.554113 | 7.4:+25939343 | None:intergenic |
| CGTTGTGAGGGCCATGAGTG+AGG | 0.558370 | 7.4:+25937421 | None:intergenic |
| AGGGACGGTGGAGAAGAGAA+AGG | 0.566596 | 7.4:+25939562 | None:intergenic |
| GGGACGGTGGAGAAGAGAAA+GGG | 0.566728 | 7.4:+25939563 | None:intergenic |
| GAGGGCGAGACAATGATCCT+AGG | 0.571341 | 7.4:+25937440 | None:intergenic |
| ACGCGATGAACGACGCGTAA+GGG | 0.572097 | 7.4:+25939250 | None:intergenic |
| GATTAACCGTTCTGGTGCAG+CGG | 0.578745 | 7.4:+25939401 | None:intergenic |
| TTTGCATTACTCAACACACT+AGG | 0.582064 | 7.4:+25938198 | None:intergenic |
| CAAGTCAAAAGAATGGAGTA+GGG | 0.584549 | 7.4:+25937366 | None:intergenic |
| AGAGGATCAAATTCTTTCAG+TGG | 0.585529 | 7.4:-25937972 | MS.gene52593:CDS |
| GTTGTGAGGGCCATGAGTGA+GGG | 0.587304 | 7.4:+25937422 | None:intergenic |
| AAACCTAATCCATATCTCCC+AGG | 0.588089 | 7.4:+25939099 | None:intergenic |
| GGGACTGTGACAGGGAGCTG+AGG | 0.591236 | 7.4:+25937386 | None:intergenic |
| CCTCATGATTGCTACCAACA+AGG | 0.594407 | 7.4:+25938166 | None:intergenic |
| CTGTAGACGAGTTTCTATCA+TGG | 0.595210 | 7.4:-25937483 | MS.gene52593:intron |
| GAGGGACCATGTACGTTGTG+AGG | 0.597541 | 7.4:+25937408 | None:intergenic |
| AAAATCCTCTGAAACAGCAT+CGG | 0.612184 | 7.4:+25939126 | None:intergenic |
| AGGGACCATGTACGTTGTGA+GGG | 0.619020 | 7.4:+25937409 | None:intergenic |
| AGACAATGATCCTAGGAGCA+GGG | 0.623433 | 7.4:+25937447 | None:intergenic |
| GAGCCTAATATACGGCATTG+AGG | 0.625067 | 7.4:-25938238 | MS.gene52593:CDS |
| GACAATGATCCTAGGAGCAG+GGG | 0.627068 | 7.4:+25937448 | None:intergenic |
| CGATGAACGACGCGTAAGGG+AGG | 0.636592 | 7.4:+25939253 | None:intergenic |
| GATGAACGACGCGTAAGGGA+GGG | 0.642182 | 7.4:+25939254 | None:intergenic |
| GGTTAAGGGTGAGAATGAAA+GGG | 0.649568 | 7.4:+25939482 | None:intergenic |
| ATGGAGTAGGGACTGTGACA+GGG | 0.649863 | 7.4:+25937378 | None:intergenic |
| GAAGAATGGAAGTGAGTATG+CGG | 0.658731 | 7.4:+25939371 | None:intergenic |
| AATGTTGTGACCGTATTGAA+GGG | 0.659290 | 7.4:+25939344 | None:intergenic |
| CCTTGTTGGTAGCAATCATG+AGG | 0.659735 | 7.4:-25938166 | MS.gene52593:CDS |
| CCACACCCGCTGCACCAGAA+CGG | 0.664416 | 7.4:-25939407 | MS.gene52593:CDS |
| GCATTGAATCTAACATACTG+CGG | 0.705676 | 7.4:+25939186 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGATTTTATAAATTTCTAT+GGG | - | chr7.4:25938341-25938360 | MS.gene52593:intron | 10.0% |
| !!! | TTAGATTTTATAAATTTCTA+TGG | - | chr7.4:25938340-25938359 | MS.gene52593:intron | 10.0% |
| !! | TAATAATAAAGAAATAGTCA+AGG | - | chr7.4:25939363-25939382 | MS.gene52593:CDS | 15.0% |
| !!! | ATGATTTATGGATTAAAATT+TGG | - | chr7.4:25938929-25938948 | MS.gene52593:CDS | 15.0% |
| !!! | ATTTTCAAAATTATGTTATG+AGG | - | chr7.4:25939019-25939038 | MS.gene52593:intron | 15.0% |
| !!! | TTTTTTTTTTACAGTTAGTT+AGG | + | chr7.4:25939250-25939269 | None:intergenic | 15.0% |
| !! | AATAAAAAACAGTTACTCAT+TGG | + | chr7.4:25938229-25938248 | None:intergenic | 20.0% |
| !! | TTAGTGAATAGAAATTGAAA+AGG | + | chr7.4:25938128-25938147 | None:intergenic | 20.0% |
| ! | AAGATCATATGATAGATGAT+AGG | - | chr7.4:25937999-25938018 | MS.gene52593:CDS | 25.0% |
| ! | CAAAATTATGTTATGAGGTT+GGG | - | chr7.4:25939024-25939043 | MS.gene52593:intron | 25.0% |
| ! | TAACTCTATTTACACATCAT+TGG | - | chr7.4:25939191-25939210 | MS.gene52593:CDS | 25.0% |
| ! | TCAAAATTATGTTATGAGGT+TGG | - | chr7.4:25939023-25939042 | MS.gene52593:intron | 25.0% |
| ! | TTAAGGAATCTCATGATTTA+TGG | - | chr7.4:25938917-25938936 | MS.gene52593:intron | 25.0% |
| !! | AATTTGCTTCTTGTTTAACA+TGG | - | chr7.4:25938450-25938469 | MS.gene52593:intron | 25.0% |
| !!! | AAACATTAGTAGTCTTGTTT+TGG | + | chr7.4:25938603-25938622 | None:intergenic | 25.0% |
| !!! | AATTCGTTGATAATGAATTC+TGG | - | chr7.4:25938631-25938650 | MS.gene52593:intron | 25.0% |
| !!! | ATCAAGGATAATTTTTTTGC+TGG | - | chr7.4:25939144-25939163 | MS.gene52593:CDS | 25.0% |
| !!! | TAGGTTTTAAGATTTTGGTT+TGG | - | chr7.4:25937857-25937876 | MS.gene52593:intron | 25.0% |
| !!! | TGGATTAGGTTTTAAGATTT+TGG | - | chr7.4:25937852-25937871 | MS.gene52593:intron | 25.0% |
| AACATATGTGATGCATCAAA+AGG | + | chr7.4:25938179-25938198 | None:intergenic | 30.0% | |
| ACTAAATTGCTTGCAAACTT+TGG | - | chr7.4:25938143-25938162 | MS.gene52593:CDS | 30.0% | |
| AGTTCATGGAGAATATATTG+TGG | - | chr7.4:25938861-25938880 | MS.gene52593:intron | 30.0% | |
| ATCTATAGAAAGAGAGGAAA+GGG | + | chr7.4:25937666-25937685 | None:intergenic | 30.0% | |
| CAAATCCAAACTTATTTCAC+AGG | + | chr7.4:25938293-25938312 | None:intergenic | 30.0% | |
| CTTGCAAACTTTGGATTTAT+GGG | - | chr7.4:25938152-25938171 | MS.gene52593:CDS | 30.0% | |
| GTGAAATAAGTTTGGATTTG+TGG | - | chr7.4:25938293-25938312 | MS.gene52593:intron | 30.0% | |
| TATTGAAGGGAATTGAAGAA+TGG | + | chr7.4:25937586-25937605 | None:intergenic | 30.0% | |
| TTCTTCAATTCCCTTCAATA+CGG | - | chr7.4:25937586-25937605 | MS.gene52593:intron | 30.0% | |
| TTGCAAACTTTGGATTTATG+GGG | - | chr7.4:25938153-25938172 | MS.gene52593:CDS | 30.0% | |
| TTGGCTTAATTTACAGATCA+AGG | - | chr7.4:25939128-25939147 | MS.gene52593:CDS | 30.0% | |
| ! | TTGTTGTTGTAATTTGTGTG+GGG | - | chr7.4:25939053-25939072 | MS.gene52593:intron | 30.0% |
| !! | AAACTATTTTAGATGCTCTG+CGG | - | chr7.4:25939083-25939102 | MS.gene52593:intron | 30.0% |
| !! | CACTTCTAGTACTTTTGATT+AGG | + | chr7.4:25938499-25938518 | None:intergenic | 30.0% |
| !! | CTTGTTGTTGTAATTTGTGT+GGG | - | chr7.4:25939052-25939071 | MS.gene52593:intron | 30.0% |
| !! | TCTTGTTGTTGTAATTTGTG+TGG | - | chr7.4:25939051-25939070 | MS.gene52593:intron | 30.0% |
| AATGTTGTGACCGTATTGAA+GGG | + | chr7.4:25937599-25937618 | None:intergenic | 35.0% | |
| AGAGGATCAAATTCTTTCAG+TGG | - | chr7.4:25938968-25938987 | MS.gene52593:CDS | 35.0% | |
| AGCAACCTGTGAAATAAGTT+TGG | - | chr7.4:25938285-25938304 | MS.gene52593:intron | 35.0% | |
| CTAACATACTGCGGAAAAAT+GGG | + | chr7.4:25937748-25937767 | None:intergenic | 35.0% | |
| CTCAAACTCAAACTCAGAAA+CGG | - | chr7.4:25937490-25937509 | MS.gene52593:intron | 35.0% | |
| GATCTATAGAAAGAGAGGAA+AGG | + | chr7.4:25937667-25937686 | None:intergenic | 35.0% | |
| GCATTGAATCTAACATACTG+CGG | + | chr7.4:25937757-25937776 | None:intergenic | 35.0% | |
| GCTTGCAAACTTTGGATTTA+TGG | - | chr7.4:25938151-25938170 | MS.gene52593:CDS | 35.0% | |
| TAACATACTGCGGAAAAATG+GGG | + | chr7.4:25937747-25937766 | None:intergenic | 35.0% | |
| TATCCTCAATGCCGTATATT+AGG | + | chr7.4:25938708-25938727 | None:intergenic | 35.0% | |
| TCTAACATACTGCGGAAAAA+TGG | + | chr7.4:25937749-25937768 | None:intergenic | 35.0% | |
| TGTTAGATTCAATGCTATGC+AGG | - | chr7.4:25937762-25937781 | MS.gene52593:intron | 35.0% | |
| TTCAATTAACATCCGCATGT+TGG | + | chr7.4:25938556-25938575 | None:intergenic | 35.0% | |
| TTGCTTGCAACACAAATAAG+TGG | + | chr7.4:25939290-25939309 | None:intergenic | 35.0% | |
| TTTGCATTACTCAACACACT+AGG | + | chr7.4:25938745-25938764 | None:intergenic | 35.0% | |
| ! | AAGGAAGTTTGTTCCTATGA+CGG | - | chr7.4:25939382-25939401 | MS.gene52593:CDS | 35.0% |
| ! | AATATACGGCATTGAGGATA+TGG | - | chr7.4:25938708-25938727 | MS.gene52593:intron | 35.0% |
| ! | AATGAAAGGGAATTGGGTTT+TGG | + | chr7.4:25937448-25937467 | None:intergenic | 35.0% |
| ! | ACAGTTACTCATTGGTTACA+TGG | + | chr7.4:25938221-25938240 | None:intergenic | 35.0% |
| ! | AGTGCTTTGTGTTGTCTTTT+GGG | - | chr7.4:25937925-25937944 | MS.gene52593:intron | 35.0% |
| ! | TAGTGCTTTGTGTTGTCTTT+TGG | - | chr7.4:25937924-25937943 | MS.gene52593:intron | 35.0% |
| ! | TGTTGTTGTAATTTGTGTGG+GGG | - | chr7.4:25939054-25939073 | MS.gene52593:intron | 35.0% |
| !! | AAAATCCTCTGAAACAGCAT+CGG | + | chr7.4:25937817-25937836 | None:intergenic | 35.0% |
| !! | AACTATTTTAGATGCTCTGC+GGG | - | chr7.4:25939084-25939103 | MS.gene52593:intron | 35.0% |
| !! | AAGTACTAGAAGTGTTCAAG+TGG | - | chr7.4:25938505-25938524 | MS.gene52593:intron | 35.0% |
| !! | GATAATGAATTCTGGAGTGT+TGG | - | chr7.4:25938639-25938658 | MS.gene52593:intron | 35.0% |
| !! | GGAAATTTCAAGTTCAAGAG+AGG | - | chr7.4:25938950-25938969 | MS.gene52593:CDS | 35.0% |
| !! | GTTATGCAGTTCTGAGTTTA+AGG | - | chr7.4:25938900-25938919 | MS.gene52593:intron | 35.0% |
| !!! | GGAATTGGGTTTTGGTTTTA+GGG | + | chr7.4:25937440-25937459 | None:intergenic | 35.0% |
| !!! | TAGTCTTGTTTTGGTTGTCA+TGG | + | chr7.4:25938594-25938613 | None:intergenic | 35.0% |
| AAACCTAATCCATATCTCCC+AGG | + | chr7.4:25937844-25937863 | None:intergenic | 40.0% | |
| AAAGAGAGGAAAGGGATGAT+TGG | + | chr7.4:25937658-25937677 | None:intergenic | 40.0% | |
| AAGAGAGGAAAGGGATGATT+GGG | + | chr7.4:25937657-25937676 | None:intergenic | 40.0% | |
| AGTGGATCGAGCCTAATATA+CGG | - | chr7.4:25938694-25938713 | MS.gene52593:intron | 40.0% | |
| ATTAACATCCGCATGTTGGT+CGG | + | chr7.4:25938552-25938571 | None:intergenic | 40.0% | |
| ATTAACTGTCAACAGAAGCG+AGG | - | chr7.4:25939337-25939356 | MS.gene52593:CDS | 40.0% | |
| CTGTAGACGAGTTTCTATCA+TGG | - | chr7.4:25939457-25939476 | MS.gene52593:CDS | 40.0% | |
| GAAGAATGGAAGTGAGTATG+CGG | + | chr7.4:25937572-25937591 | None:intergenic | 40.0% | |
| GAATGTTGTGACCGTATTGA+AGG | + | chr7.4:25937600-25937619 | None:intergenic | 40.0% | |
| GCTATTGAGATTAACCGTTC+TGG | + | chr7.4:25937550-25937569 | None:intergenic | 40.0% | |
| GGTGAGAATGAAAGGGAATT+GGG | + | chr7.4:25937454-25937473 | None:intergenic | 40.0% | |
| GGTTAAGGGTGAGAATGAAA+GGG | + | chr7.4:25937461-25937480 | None:intergenic | 40.0% | |
| GTCCTTATGTAATGGTGCTT+TGG | - | chr7.4:25939109-25939128 | MS.gene52593:CDS | 40.0% | |
| TATGCCTCCAAGTATCAATG+AGG | - | chr7.4:25938811-25938830 | MS.gene52593:intron | 40.0% | |
| TATTCTCCATGAACTTCACC+AGG | + | chr7.4:25938856-25938875 | None:intergenic | 40.0% | |
| TCAGCAACAAAAGGCAAGTA+AGG | + | chr7.4:25937958-25937977 | None:intergenic | 40.0% | |
| TCTGACATTAGATGTGCTTC+TGG | - | chr7.4:25937786-25937805 | MS.gene52593:intron | 40.0% | |
| ! | AGCCAAAGCACCATTACATA+AGG | + | chr7.4:25939114-25939133 | None:intergenic | 40.0% |
| ! | AGTTTGAGTTTGAGTGATGG+TGG | + | chr7.4:25937484-25937503 | None:intergenic | 40.0% |
| ! | ATTTTCTCTCCTGGGAGATA+TGG | - | chr7.4:25937832-25937851 | MS.gene52593:intron | 40.0% |
| ! | CTGAGTTTGAGTTTGAGTGA+TGG | + | chr7.4:25937487-25937506 | None:intergenic | 40.0% |
| ! | GTTTGAGTTTGAGTGATGGT+GGG | + | chr7.4:25937483-25937502 | None:intergenic | 40.0% |
| ! | TTCAGAGGATTTTCTCTCCT+GGG | - | chr7.4:25937824-25937843 | MS.gene52593:intron | 40.0% |
| ! | TTTCAGAGGATTTTCTCTCC+TGG | - | chr7.4:25937823-25937842 | MS.gene52593:intron | 40.0% |
| ! | TTTGAGTTTGAGTGATGGTG+GGG | + | chr7.4:25937482-25937501 | None:intergenic | 40.0% |
| !! | CTTTGTGTTGTCTTTTGGGT+AGG | - | chr7.4:25937929-25937948 | MS.gene52593:intron | 40.0% |
| !! | GAATTCTGGAGTGTTGGTAA+TGG | - | chr7.4:25938645-25938664 | MS.gene52593:intron | 40.0% |
| !! | TTGGTAATGGAGGGAGTATA+GGG | - | chr7.4:25938658-25938677 | MS.gene52593:intron | 40.0% |
| !!! | GGGAATTGGGTTTTGGTTTT+AGG | + | chr7.4:25937441-25937460 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGTTTTAGGGTTA+GGG | + | chr7.4:25937434-25937453 | None:intergenic | 40.0% |
| !!! | TGGGTTTTGGTTTTAGGGTT+AGG | + | chr7.4:25937435-25937454 | None:intergenic | 40.0% |
| AAGGGATGATTGGGTCGAAA+AGG | + | chr7.4:25937648-25937667 | None:intergenic | 45.0% | |
| AGACAATGATCCTAGGAGCA+GGG | + | chr7.4:25939496-25939515 | None:intergenic | 45.0% | |
| AGGGTTAGGGTTGAGGATTT+GGG | + | chr7.4:25937421-25937440 | None:intergenic | 45.0% | |
| CAGTTCAAGAAAGTCGTCAG+AGG | + | chr7.4:25939440-25939459 | None:intergenic | 45.0% | |
| CCTCATGATTGCTACCAACA+AGG | + | chr7.4:25938777-25938796 | None:intergenic | 45.0% | |
| CGCTTTACTTGGGAATCGTA+AGG | - | chr7.4:25937719-25937738 | MS.gene52593:intron | 45.0% | |
| CTAGAGATCATGACCGTCAT+AGG | + | chr7.4:25939398-25939417 | None:intergenic | 45.0% | |
| CTCCAAGTATCAATGAGGAG+AGG | - | chr7.4:25938816-25938835 | MS.gene52593:intron | 45.0% | |
| CTCTCCTCATTGATACTTGG+AGG | + | chr7.4:25938818-25938837 | None:intergenic | 45.0% | |
| GAGCCTAATATACGGCATTG+AGG | - | chr7.4:25938702-25938721 | MS.gene52593:intron | 45.0% | |
| GCAAAAGTTGCAGACCTTGT+TGG | - | chr7.4:25938760-25938779 | MS.gene52593:intron | 45.0% | |
| GGAGGGATCTATAGAAAGAG+AGG | + | chr7.4:25937672-25937691 | None:intergenic | 45.0% | |
| GGGTGAGAATGAAAGGGAAT+TGG | + | chr7.4:25937455-25937474 | None:intergenic | 45.0% | |
| GGGTTAAGGGTGAGAATGAA+AGG | + | chr7.4:25937462-25937481 | None:intergenic | 45.0% | |
| GTCCTCTCCTCATTGATACT+TGG | + | chr7.4:25938821-25938840 | None:intergenic | 45.0% | |
| TAGGGTTAGGGTTGAGGATT+TGG | + | chr7.4:25937422-25937441 | None:intergenic | 45.0% | |
| TCTCCTGGGAGATATGGATT+AGG | - | chr7.4:25937838-25937857 | MS.gene52593:intron | 45.0% | |
| TGTGGTGAAAAATGCAGGGA+CGG | + | chr7.4:25937396-25937415 | None:intergenic | 45.0% | |
| TTAACATCCGCATGTTGGTC+GGG | + | chr7.4:25938551-25938570 | None:intergenic | 45.0% | |
| ! | CGAAAAGGAGTGCGACTTTA+GGG | + | chr7.4:25937633-25937652 | None:intergenic | 45.0% |
| ! | TCGAAAAGGAGTGCGACTTT+AGG | + | chr7.4:25937634-25937653 | None:intergenic | 45.0% |
| ! | TGCGGGTTGTCCTTATGTAA+TGG | - | chr7.4:25939101-25939120 | MS.gene52593:intron | 45.0% |
| !! | CCTTGTTGGTAGCAATCATG+AGG | - | chr7.4:25938774-25938793 | MS.gene52593:intron | 45.0% |
| !! | GTTGGTAATGGAGGGAGTAT+AGG | - | chr7.4:25938657-25938676 | MS.gene52593:intron | 45.0% |
| !! | TCTGGAGTGTTGGTAATGGA+GGG | - | chr7.4:25938649-25938668 | MS.gene52593:intron | 45.0% |
| !! | TGGTAATGGAGGGAGTATAG+GGG | - | chr7.4:25938659-25938678 | MS.gene52593:intron | 45.0% |
| !! | TTCTGGAGTGTTGGTAATGG+AGG | - | chr7.4:25938648-25938667 | MS.gene52593:intron | 45.0% |
| !! | TTCTTCCGATGCTGTTTCAG+AGG | - | chr7.4:25937809-25937828 | MS.gene52593:intron | 45.0% |
| !! | TTGAGTGATGGTGGGGTTAA+GGG | + | chr7.4:25937475-25937494 | None:intergenic | 45.0% |
| !! | TTTGAGTGATGGTGGGGTTA+AGG | + | chr7.4:25937476-25937495 | None:intergenic | 45.0% |
| !!! | TGGTTTTAGGGTTAGGGTTG+AGG | + | chr7.4:25937428-25937447 | None:intergenic | 45.0% |
| AATGGAGTAGGGACTGTGAC+AGG | + | chr7.4:25939566-25939585 | None:intergenic | 50.0% | |
| AGGGACCATGTACGTTGTGA+GGG | + | chr7.4:25939534-25939553 | None:intergenic | 50.0% | |
| ATGGAGTAGGGACTGTGACA+GGG | + | chr7.4:25939565-25939584 | None:intergenic | 50.0% | |
| ATTAACCGTTCTGGTGCAGC+GGG | + | chr7.4:25937541-25937560 | None:intergenic | 50.0% | |
| GACAATGATCCTAGGAGCAG+GGG | + | chr7.4:25939495-25939514 | None:intergenic | 50.0% | |
| GAGACAATGATCCTAGGAGC+AGG | + | chr7.4:25939497-25939516 | None:intergenic | 50.0% | |
| GAGGAGAGGACTTGAGTGTT+TGG | - | chr7.4:25938830-25938849 | MS.gene52593:intron | 50.0% | |
| GATTAACCGTTCTGGTGCAG+CGG | + | chr7.4:25937542-25937561 | None:intergenic | 50.0% | |
| GCAGCAGCATCAGCAACAAA+AGG | + | chr7.4:25937967-25937986 | None:intergenic | 50.0% | |
| GCGTTCTTCGCGCTTTACTT+GGG | - | chr7.4:25937709-25937728 | MS.gene52593:intron | 50.0% | |
| GGGGTGTGGTGAAAAATGCA+GGG | + | chr7.4:25937400-25937419 | None:intergenic | 50.0% | |
| GGGTTAGGGTTGAGGATTTG+GGG | + | chr7.4:25937420-25937439 | None:intergenic | 50.0% | |
| GGTTAGGGTTGAGGATTTGG+GGG | + | chr7.4:25937419-25937438 | None:intergenic | 50.0% | |
| GTTTGGCCTGGTGAAGTTCA+TGG | - | chr7.4:25938847-25938866 | MS.gene52593:intron | 50.0% | |
| TTTCAGTGGCTCGCGATTCA+TGG | - | chr7.4:25938982-25939001 | MS.gene52593:CDS | 50.0% | |
| ! | ATGGAGGGAGTATAGGGGAT+TGG | - | chr7.4:25938664-25938683 | MS.gene52593:intron | 50.0% |
| !! | TAGGGGATTGGTCTGACAAG+TGG | - | chr7.4:25938676-25938695 | MS.gene52593:intron | 50.0% |
| AACGCGATGAACGACGCGTA+AGG | + | chr7.4:25937694-25937713 | None:intergenic | 55.0% | |
| ACGCGATGAACGACGCGTAA+GGG | + | chr7.4:25937693-25937712 | None:intergenic | 55.0% | |
| AGGGACGGTGGAGAAGAGAA+AGG | + | chr7.4:25937381-25937400 | None:intergenic | 55.0% | |
| AGTGGCTCGCGATTCATGGT+AGG | - | chr7.4:25938986-25939005 | MS.gene52593:CDS | 55.0% | |
| CATGGCCCTCACAACGTACA+TGG | - | chr7.4:25939526-25939545 | MS.gene52593:CDS | 55.0% | |
| CATTGTCTCGCCCTCACTCA+TGG | - | chr7.4:25939508-25939527 | MS.gene52593:CDS | 55.0% | |
| CGCGTTCTTCGCGCTTTACT+TGG | - | chr7.4:25937708-25937727 | MS.gene52593:intron | 55.0% | |
| GAGGACTTGAGTGTTTGGCC+TGG | - | chr7.4:25938835-25938854 | MS.gene52593:intron | 55.0% | |
| GAGGGACCATGTACGTTGTG+AGG | + | chr7.4:25939535-25939554 | None:intergenic | 55.0% | |
| GAGGGCGAGACAATGATCCT+AGG | + | chr7.4:25939503-25939522 | None:intergenic | 55.0% | |
| GATGAACGACGCGTAAGGGA+GGG | + | chr7.4:25937689-25937708 | None:intergenic | 55.0% | |
| GGGACGGTGGAGAAGAGAAA+GGG | + | chr7.4:25937380-25937399 | None:intergenic | 55.0% | |
| GGTGAAAAATGCAGGGACGG+TGG | + | chr7.4:25937393-25937412 | None:intergenic | 55.0% | |
| GTTGTGAGGGCCATGAGTGA+GGG | + | chr7.4:25939521-25939540 | None:intergenic | 55.0% | |
| TCTAGCACCCGACCAACATG+CGG | - | chr7.4:25938541-25938560 | MS.gene52593:intron | 55.0% | |
| TTGCTGGTGAGCTGCTGCAA+TGG | - | chr7.4:25939160-25939179 | MS.gene52593:CDS | 55.0% | |
| ! | GGGGGTGTGGTGAAAAATGC+AGG | + | chr7.4:25937401-25937420 | None:intergenic | 55.0% |
| ACTGTGACAGGGAGCTGAGG+AGG | + | chr7.4:25939554-25939573 | None:intergenic | 60.0% | |
| CGATGAACGACGCGTAAGGG+AGG | + | chr7.4:25937690-25937709 | None:intergenic | 60.0% | |
| CGTTGTGAGGGCCATGAGTG+AGG | + | chr7.4:25939522-25939541 | None:intergenic | 60.0% | |
| CTAGGAGCAGGGGTCGTGAT+AGG | + | chr7.4:25939485-25939504 | None:intergenic | 60.0% | |
| CTATCACGACCCCTGCTCCT+AGG | - | chr7.4:25939483-25939502 | MS.gene52593:CDS | 60.0% | |
| CTGTGACAGGGAGCTGAGGA+GGG | + | chr7.4:25939553-25939572 | None:intergenic | 60.0% | |
| GGGTTGAGGATTTGGGGGTG+TGG | + | chr7.4:25937414-25937433 | None:intergenic | 60.0% | |
| CCACACCCGCTGCACCAGAA+CGG | - | chr7.4:25937533-25937552 | MS.gene52593:intron | 65.0% | |
| GGGACTGTGACAGGGAGCTG+AGG | + | chr7.4:25939557-25939576 | None:intergenic | 65.0% | |
| TGCAGCGGGTGTGGATGTGC+TGG | + | chr7.4:25937527-25937546 | None:intergenic | 65.0% | |
| CCGTTCTGGTGCAGCGGGTG+TGG | + | chr7.4:25937536-25937555 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25937370 | 25939592 | 25937370 | ID=MS.gene52593 |
| chr7.4 | mRNA | 25937370 | 25939592 | 25937370 | ID=MS.gene52593.t1;Parent=MS.gene52593 |
| chr7.4 | exon | 25939103 | 25939592 | 25939103 | ID=MS.gene52593.t1.exon1;Parent=MS.gene52593.t1 |
| chr7.4 | CDS | 25939103 | 25939592 | 25939103 | ID=cds.MS.gene52593.t1;Parent=MS.gene52593.t1 |
| chr7.4 | exon | 25938918 | 25939011 | 25938918 | ID=MS.gene52593.t1.exon2;Parent=MS.gene52593.t1 |
| chr7.4 | CDS | 25938918 | 25939011 | 25938918 | ID=cds.MS.gene52593.t1;Parent=MS.gene52593.t1 |
| chr7.4 | exon | 25938141 | 25938266 | 25938141 | ID=MS.gene52593.t1.exon3;Parent=MS.gene52593.t1 |
| chr7.4 | CDS | 25938141 | 25938266 | 25938141 | ID=cds.MS.gene52593.t1;Parent=MS.gene52593.t1 |
| chr7.4 | exon | 25937955 | 25938053 | 25937955 | ID=MS.gene52593.t1.exon4;Parent=MS.gene52593.t1 |
| chr7.4 | CDS | 25937955 | 25938053 | 25937955 | ID=cds.MS.gene52593.t1;Parent=MS.gene52593.t1 |
| chr7.4 | exon | 25937370 | 25937499 | 25937370 | ID=MS.gene52593.t1.exon5;Parent=MS.gene52593.t1 |
| chr7.4 | CDS | 25937370 | 25937499 | 25937370 | ID=cds.MS.gene52593.t1;Parent=MS.gene52593.t1 |
| Gene Sequence |
| Protein sequence |
