AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52628

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52628.t1 MTR_1g081900 99.649 285 1 0 1 285 257 541 0.0 588
MS.gene52628.t1 MTR_7g114250 74.744 293 65 3 1 284 251 543 2.14e-155 444
MS.gene52628.t1 MTR_4g118770 72.826 276 72 1 1 276 256 528 2.40e-140 405
MS.gene52628.t1 MTR_1g082440 59.107 291 86 4 1 276 257 529 1.06e-112 335
MS.gene52628.t1 MTR_1g082450 59.643 280 97 4 1 276 257 524 2.53e-106 319
MS.gene52628.t1 MTR_3g055600 58.955 268 103 3 1 265 261 524 1.75e-100 304
MS.gene52628.t1 MTR_2g028230 36.126 191 104 7 2 189 249 424 1.99e-22 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52628.t1 AT3G05030 73.868 287 71 2 1 283 256 542 7.54e-153 438
MS.gene52628.t1 AT3G05030 73.868 287 71 2 1 283 256 542 7.54e-153 438
MS.gene52628.t1 AT3G05030 73.868 287 71 2 1 283 256 542 7.54e-153 438
MS.gene52628.t1 AT5G27150 73.665 281 70 3 1 280 254 531 1.16e-147 425
MS.gene52628.t1 AT3G06370 67.128 289 84 4 1 284 257 539 1.02e-118 351
MS.gene52628.t1 AT3G06370 67.128 289 84 4 1 284 257 539 1.02e-118 351
MS.gene52628.t1 AT3G05030 82.447 188 27 1 1 182 256 443 1.81e-106 317
MS.gene52628.t1 AT3G06370 68.379 253 69 4 1 248 257 503 2.25e-99 300
MS.gene52628.t1 AT5G55470 54.982 271 112 3 1 265 254 520 5.07e-94 287
MS.gene52628.t1 AT3G06370 80.405 148 29 0 1 148 257 404 1.76e-72 229
MS.gene52628.t1 AT1G79610 34.555 191 107 7 2 189 264 439 7.34e-21 92.4
MS.gene52628.t1 AT1G54370 37.415 147 77 5 2 145 264 398 1.08e-19 89.0

Find 58 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCATTGTCCCACTTCT+AGG 0.209054 1.1:+60731588 MS.gene52628:CDS
AGTGGGACAATGAATGATTT+TGG 0.240398 1.1:-60731582 None:intergenic
CTCACACTGTTCATCGATTA+TGG 0.271792 1.1:+60731694 MS.gene52628:CDS
TTGATGCAGTTCACCATGTC+GGG 0.365442 1.1:+60731025 MS.gene52628:intron
TGTTCGGTCGGTGAATTTCA+TGG 0.372487 1.1:-60731644 None:intergenic
ATTACAATTTATCAGGTGTT+TGG 0.372668 1.1:+60731477 MS.gene52628:intron
TTGTTGGGTCTAATACTTCT+TGG 0.378696 1.1:+60730585 MS.gene52628:CDS
TTTAGTCAAGTTGGATAAGA+AGG 0.381030 1.1:-60730634 None:intergenic
CAAGTTGGATAAGAAGGATA+AGG 0.382746 1.1:-60730628 None:intergenic
AGCTGCAAGTTCAGTATTGT+TGG 0.385899 1.1:+60730569 MS.gene52628:CDS
AATGGCACTTGCGTATAATC+AGG 0.391176 1.1:+60730831 MS.gene52628:CDS
ATCTTTATCTTCCTTTATGT+TGG 0.399431 1.1:+60730273 MS.gene52628:CDS
GATTCTGAAGCTGATCTTGA+AGG 0.399508 1.1:+60731621 MS.gene52628:CDS
TATCTTCCTTTATGTTGGTA+TGG 0.401826 1.1:+60730278 MS.gene52628:CDS
TAGGTTATCATTTGGTGGGC+TGG 0.409191 1.1:+60730787 MS.gene52628:intron
AATGGAAGTTTGTTAGTGAT+AGG 0.409420 1.1:+60730319 MS.gene52628:CDS
TATGAGAGGTGCTGTTTCAA+TGG 0.419953 1.1:+60730813 MS.gene52628:CDS
GGTAAGAATGCCACTCAGAT+AGG 0.440033 1.1:-60730031 None:intergenic
TGAACGCAATGGTAATCAAT+GGG 0.442698 1.1:+60731794 MS.gene52628:CDS
GGCTTACCACTGTGCTGAAA+AGG 0.442970 1.1:-60731102 None:intergenic
CTTGGTGAGCCAGGTTCTAC+AGG 0.443445 1.1:-60731771 None:intergenic
CAAGATCAGCTTCAGAATCT+CGG 0.443542 1.1:-60731617 None:intergenic
AGTAAAGCACGAAGGCTGTT+CGG 0.452548 1.1:-60731660 None:intergenic
TTGTTATGTCTCATTATACT+TGG 0.457147 1.1:+60730070 MS.gene52628:CDS
TTGCGTTCACTTGGTGAGCC+AGG 0.466834 1.1:-60731780 None:intergenic
TGCTGACTAAGCCACTCATA+AGG 0.466961 1.1:+60731502 MS.gene52628:CDS
GGGCATCCATACCAACATAA+AGG 0.472613 1.1:-60730284 None:intergenic
AAGTTGGATAAGAAGGATAA+GGG 0.473086 1.1:-60730627 None:intergenic
GTGAACGCAATGGTAATCAA+TGG 0.474866 1.1:+60731793 MS.gene52628:CDS
GCTGCAAGTTCAGTATTGTT+GGG 0.488198 1.1:+60730570 MS.gene52628:CDS
CTTGCAGCTATAGATGTTCC+AGG 0.488582 1.1:-60730555 None:intergenic
AACAATACCACAAAAGAATA+CGG 0.489252 1.1:-60730052 None:intergenic
AAGATCAGCTTCAGAATCTC+GGG 0.489748 1.1:-60731616 None:intergenic
TGATTACCATTGCGTTCACT+TGG 0.493357 1.1:-60731789 None:intergenic
TTATGTTGGTATGGATGCCC+TGG 0.498703 1.1:+60730287 MS.gene52628:CDS
AGGTTGCTCTATGATGCTAA+TGG 0.509799 1.1:+60729892 None:intergenic
TTTGATGCAGTTCACCATGT+CGG 0.516704 1.1:+60731024 MS.gene52628:intron
GGCATACCTCTCCTATATGC+TGG 0.520496 1.1:+60729913 MS.gene52628:CDS
TGGCCATACTTGCTGTCTGA+AGG 0.525975 1.1:-60730679 None:intergenic
ACCTACCTCAGCCAGCATAT+AGG 0.526592 1.1:-60729924 None:intergenic
AATCGATGAACAGTGTGAGT+TGG 0.579424 1.1:-60731690 None:intergenic
TCTCGGGAATCTCCTAGAAG+TGG 0.589238 1.1:-60731600 None:intergenic
CCTCTCCTATATGCTGGCTG+AGG 0.606924 1.1:+60729919 MS.gene52628:CDS
TGGTGGGCTGGTCTTATGAG+AGG 0.607118 1.1:+60730799 MS.gene52628:CDS
GATAAAGATCTCAGCAACAA+AGG 0.607883 1.1:-60730259 None:intergenic
CTCGGGAATCTCCTAGAAGT+GGG 0.609122 1.1:-60731599 None:intergenic
AAGCACGAAGGCTGTTCGGT+CGG 0.612423 1.1:-60731656 None:intergenic
TAGTTGAGTATGCCCCGACA+TGG 0.643424 1.1:-60731038 None:intergenic
TGATGCAGTTCACCATGTCG+GGG 0.644290 1.1:+60731026 MS.gene52628:intron
AAGGACAACAGTGATGGTGC+TGG 0.652906 1.1:-60731083 None:intergenic
GATCTCAGCAACAAAGGACA+AGG 0.655763 1.1:-60730253 None:intergenic
GGCTCACCAAGTGAACGCAA+TGG 0.680619 1.1:+60731783 MS.gene52628:CDS
CCTCAGCCAGCATATAGGAG+AGG 0.687456 1.1:-60729919 None:intergenic
GAACGCAATGGTAATCAATG+GGG 0.694035 1.1:+60731795 MS.gene52628:CDS
GCTGAAAAGGACAACAGTGA+TGG 0.701655 1.1:-60731089 None:intergenic
GGTAGTAGAAGCCTTATGAG+TGG 0.701911 1.1:-60731513 None:intergenic
ATGCAGTTAACCTATCTGAG+TGG 0.719464 1.1:+60730021 MS.gene52628:intron
GAGTTGATAGTAAAGCACGA+AGG 0.775920 1.1:-60731668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTATAGCTATTTATTGTT+TGG - chr1.1:60730916-60730935 None:intergenic 20.0%
!! CAAGTTAATTACAATTTATC+AGG + chr1.1:60731470-60731489 MS.gene52628:intron 20.0%
!!! GTTTTGGATATTTGAATAAT+TGG + chr1.1:60730878-60730897 MS.gene52628:intron 20.0%
! AAAAATCGCTCAGTAAAAAA+GGG - chr1.1:60730390-60730409 None:intergenic 25.0%
! AAAGAATTTCCTACATTTCA+TGG - chr1.1:60731314-60731333 None:intergenic 25.0%
! AAATGATAACCTAAAATGAG+GGG - chr1.1:60730780-60730799 None:intergenic 25.0%
! AACAATACCACAAAAGAATA+CGG - chr1.1:60730055-60730074 None:intergenic 25.0%
! ATCTTTATCTTCCTTTATGT+TGG + chr1.1:60730273-60730292 MS.gene52628:CDS 25.0%
! ATTACAATTTATCAGGTGTT+TGG + chr1.1:60731477-60731496 MS.gene52628:intron 25.0%
! CAAATGATAACCTAAAATGA+GGG - chr1.1:60730781-60730800 None:intergenic 25.0%
! TAAAAATCGCTCAGTAAAAA+AGG - chr1.1:60730391-60730410 None:intergenic 25.0%
! TAGGAAGAAAAAAACAGTTA+AGG - chr1.1:60730504-60730523 None:intergenic 25.0%
! TATAACTGATCCTATCTATT+GGG + chr1.1:60730929-60730948 MS.gene52628:intron 25.0%
! TTGTTATGTCTCATTATACT+TGG + chr1.1:60730070-60730089 MS.gene52628:CDS 25.0%
!! AAAGAACTTAGTATGTTTTC+TGG + chr1.1:60729950-60729969 MS.gene52628:intron 25.0%
!!! ATTTTAGGTTATCATTTGGT+GGG + chr1.1:60730783-60730802 MS.gene52628:intron 25.0%
!!! TTGTGATTTTTTAGTCAAGT+TGG - chr1.1:60730646-60730665 None:intergenic 25.0%
AAGCACAAGAAATACAGAAA+AGG - chr1.1:60730721-60730740 None:intergenic 30.0%
AAGGTCACTCAATAGAAATT+TGG - chr1.1:60730702-60730721 None:intergenic 30.0%
AAGTTGGATAAGAAGGATAA+GGG - chr1.1:60730630-60730649 None:intergenic 30.0%
AGATATAGAAAAGACATGTC+TGG - chr1.1:60730189-60730208 None:intergenic 30.0%
ATCTGTTTAGAAGACATACT+TGG - chr1.1:60730127-60730146 None:intergenic 30.0%
ATTTCTTGTGCTTAATACCA+AGG + chr1.1:60730728-60730747 MS.gene52628:intron 30.0%
CCAAATGATAACCTAAAATG+AGG - chr1.1:60730782-60730801 None:intergenic 30.0%
CTATAACTGATCCTATCTAT+TGG + chr1.1:60730928-60730947 MS.gene52628:intron 30.0%
GTCAGAAACTGCAAAATTAA+TGG - chr1.1:60731126-60731145 None:intergenic 30.0%
TATCTTCCTTTATGTTGGTA+TGG + chr1.1:60730278-60730297 MS.gene52628:CDS 30.0%
! AAACCTTTTTCCCAATAGAT+AGG - chr1.1:60730942-60730961 None:intergenic 30.0%
! ATTCTTACCGTATTCTTTTG+TGG + chr1.1:60730045-60730064 MS.gene52628:CDS 30.0%
! ATTTTTGTCCAACTTTTCAC+AGG + chr1.1:60730217-60730236 MS.gene52628:intron 30.0%
!! AATGGAAGTTTGTTAGTGAT+AGG + chr1.1:60730319-60730338 MS.gene52628:CDS 30.0%
!! TTTAGTCAAGTTGGATAAGA+AGG - chr1.1:60730637-60730656 None:intergenic 30.0%
!!! CAACAATTAGTCTTTGGTTT+TGG + chr1.1:60731287-60731306 MS.gene52628:intron 30.0%
!!! CATTTTAGGTTATCATTTGG+TGG + chr1.1:60730782-60730801 MS.gene52628:intron 30.0%
!!! CCTCATTTTAGGTTATCATT+TGG + chr1.1:60730779-60730798 MS.gene52628:intron 30.0%
AAAGAATGCCTGTGAAAAGT+TGG - chr1.1:60730228-60730247 None:intergenic 35.0%
AACCAAAGACTAATTGTTGC+AGG - chr1.1:60731286-60731305 None:intergenic 35.0%
ATAAAATAAACCGTGCAGTG+AGG - chr1.1:60731176-60731195 None:intergenic 35.0%
ATCACCAGTAAAGAGAACTT+AGG - chr1.1:60730350-60730369 None:intergenic 35.0%
ATGTCCTAAGTTCTCTTTAC+TGG + chr1.1:60730343-60730362 MS.gene52628:intron 35.0%
CAGTTCTATCATACCATCTA+TGG - chr1.1:60730437-60730456 None:intergenic 35.0%
CTATTGGGAAAAAGGTTTGA+TGG + chr1.1:60730944-60730963 MS.gene52628:intron 35.0%
GATAAAGATCTCAGCAACAA+AGG - chr1.1:60730262-60730281 None:intergenic 35.0%
GATCCTATCTATTGGGAAAA+AGG + chr1.1:60730936-60730955 MS.gene52628:intron 35.0%
GTGAACTGCATCAAATAGAT+AGG - chr1.1:60731019-60731038 None:intergenic 35.0%
TATCCAAAACCAAAACTCAG+TGG - chr1.1:60730868-60730887 None:intergenic 35.0%
TGAACGCAATGGTAATCAAT+GGG + chr1.1:60731794-60731813 MS.gene52628:CDS 35.0%
TTGTTGGGTCTAATACTTCT+TGG + chr1.1:60730585-60730604 MS.gene52628:CDS 35.0%
! AGTGGGACAATGAATGATTT+TGG - chr1.1:60731585-60731604 None:intergenic 35.0%
! CAAGTTGGATAAGAAGGATA+AGG - chr1.1:60730631-60730650 None:intergenic 35.0%
! CATCTTTTCATGTCCATAGA+TGG + chr1.1:60730421-60730440 MS.gene52628:intron 35.0%
! GTTGTTGTTGTCACAAATGA+CGG + chr1.1:60730972-60730991 MS.gene52628:intron 35.0%
!! ACTTCCATTTTTCAATGTCC+AGG - chr1.1:60730308-60730327 None:intergenic 35.0%
!! CTTCCATTTTTCAATGTCCA+GGG - chr1.1:60730307-60730326 None:intergenic 35.0%
!! TTCCTGCAACAATTAGTCTT+TGG + chr1.1:60731281-60731300 MS.gene52628:intron 35.0%
AAGATCAGCTTCAGAATCTC+GGG - chr1.1:60731619-60731638 None:intergenic 40.0%
AATCGATGAACAGTGTGAGT+TGG - chr1.1:60731693-60731712 None:intergenic 40.0%
AATGGCACTTGCGTATAATC+AGG + chr1.1:60730831-60730850 MS.gene52628:CDS 40.0%
AGCTGCAAGTTCAGTATTGT+TGG + chr1.1:60730569-60730588 MS.gene52628:CDS 40.0%
ATGCAGTTAACCTATCTGAG+TGG + chr1.1:60730021-60730040 MS.gene52628:intron 40.0%
ATGCCCTGGACATTGAAAAA+TGG + chr1.1:60730301-60730320 MS.gene52628:CDS 40.0%
CAAGATCAGCTTCAGAATCT+CGG - chr1.1:60731620-60731639 None:intergenic 40.0%
CAGTCAAACCAAGTAGTACA+AGG - chr1.1:60730475-60730494 None:intergenic 40.0%
GAACGCAATGGTAATCAATG+GGG + chr1.1:60731795-60731814 MS.gene52628:CDS 40.0%
GCTGCAAGTTCAGTATTGTT+GGG + chr1.1:60730570-60730589 MS.gene52628:CDS 40.0%
GTGAACGCAATGGTAATCAA+TGG + chr1.1:60731793-60731812 MS.gene52628:CDS 40.0%
TCATTCATTGTCCCACTTCT+AGG + chr1.1:60731588-60731607 MS.gene52628:CDS 40.0%
TGATTACCATTGCGTTCACT+TGG - chr1.1:60731792-60731811 None:intergenic 40.0%
TTATTGTTTGGCTGAAGCAG+TGG - chr1.1:60730904-60730923 None:intergenic 40.0%
TTTCCTTCAGACAGCAAGTA+TGG + chr1.1:60730676-60730695 MS.gene52628:intron 40.0%
TTTGATGCAGTTCACCATGT+CGG + chr1.1:60731024-60731043 MS.gene52628:intron 40.0%
! ATTAGTTTCTCCTCACTGCA+CGG + chr1.1:60731163-60731182 MS.gene52628:intron 40.0%
! CTCACACTGTTCATCGATTA+TGG + chr1.1:60731694-60731713 MS.gene52628:CDS 40.0%
! CTTTTGCTTCCCCTCATTTT+AGG + chr1.1:60730768-60730787 MS.gene52628:intron 40.0%
! TCATTCATGCGTCCTGTTTT+TGG + chr1.1:60731732-60731751 MS.gene52628:CDS 40.0%
!! GAGTTGATAGTAAAGCACGA+AGG - chr1.1:60731671-60731690 None:intergenic 40.0%
!! GATTCTGAAGCTGATCTTGA+AGG + chr1.1:60731621-60731640 MS.gene52628:CDS 40.0%
!! GGTTTTGGTCCATGAAATGT+AGG + chr1.1:60731302-60731321 MS.gene52628:intron 40.0%
!! GTCATGCTGCTTGTGATTTT+AGG - chr1.1:60731543-60731562 None:intergenic 40.0%
!! TATGAGAGGTGCTGTTTCAA+TGG + chr1.1:60730813-60730832 MS.gene52628:CDS 40.0%
!!! CTGCTTGTGATTTTAGGATG+AGG - chr1.1:60731537-60731556 None:intergenic 40.0%
!!! GTACCACTGAGTTTTGGTTT+TGG + chr1.1:60730862-60730881 MS.gene52628:intron 40.0%
!!! TTTTGGAGTAGTCGATTCTG+TGG - chr1.1:60731568-60731587 None:intergenic 40.0%
AAACCTCTGCCACCAAAAAC+AGG - chr1.1:60731747-60731766 None:intergenic 45.0%
ACCAAGTGTGGCACAAGAAT+AGG - chr1.1:60730523-60730542 None:intergenic 45.0%
AGACACTTGTCAGCATACCT+TGG - chr1.1:60730748-60730767 None:intergenic 45.0%
AGTAAAGCACGAAGGCTGTT+CGG - chr1.1:60731663-60731682 None:intergenic 45.0%
CTATAGATGTTCCAGGACTG+CGG - chr1.1:60730551-60730570 None:intergenic 45.0%
CTTGCAGCTATAGATGTTCC+AGG - chr1.1:60730558-60730577 None:intergenic 45.0%
GAAGCAGTCCTTGTACTACT+TGG + chr1.1:60730464-60730483 MS.gene52628:intron 45.0%
GATCTCAGCAACAAAGGACA+AGG - chr1.1:60730256-60730275 None:intergenic 45.0%
GCTGAAAAGGACAACAGTGA+TGG - chr1.1:60731092-60731111 None:intergenic 45.0%
GGGCATCCATACCAACATAA+AGG - chr1.1:60730287-60730306 None:intergenic 45.0%
GGTAAGAATGCCACTCAGAT+AGG - chr1.1:60730034-60730053 None:intergenic 45.0%
GTGCAGTGAGGAGAAACTAA+TGG - chr1.1:60731164-60731183 None:intergenic 45.0%
TCCTATTCTTGTGCCACACT+TGG + chr1.1:60730519-60730538 MS.gene52628:intron 45.0%
TGTTCGGTCGGTGAATTTCA+TGG - chr1.1:60731647-60731666 None:intergenic 45.0%
TTATGTTGGTATGGATGCCC+TGG + chr1.1:60730287-60730306 MS.gene52628:CDS 45.0%
TTGATGCAGTTCACCATGTC+GGG + chr1.1:60731025-60731044 MS.gene52628:intron 45.0%
! GGTAGTAGAAGCCTTATGAG+TGG - chr1.1:60731516-60731535 None:intergenic 45.0%
! TAGGTTATCATTTGGTGGGC+TGG + chr1.1:60730787-60730806 MS.gene52628:intron 45.0%
! TGAGCAGTACCACTGAGTTT+TGG + chr1.1:60730856-60730875 MS.gene52628:intron 45.0%
! TGCTGACTAAGCCACTCATA+AGG + chr1.1:60731502-60731521 MS.gene52628:CDS 45.0%
! TGTTGTCCTTTTCAGCACAG+TGG + chr1.1:60731096-60731115 MS.gene52628:CDS 45.0%
!!! GGTTTTGTTCCTGTAGAACC+TGG + chr1.1:60731762-60731781 MS.gene52628:CDS 45.0%
!!! TTCATGCGTCCTGTTTTTGG+TGG + chr1.1:60731735-60731754 MS.gene52628:CDS 45.0%
ACCTACCTCAGCCAGCATAT+AGG - chr1.1:60729927-60729946 None:intergenic 50.0%
ACTGCGGAAGAAACCAAGTG+TGG - chr1.1:60730535-60730554 None:intergenic 50.0%
CTCGGGAATCTCCTAGAAGT+GGG - chr1.1:60731602-60731621 None:intergenic 50.0%
GGCATACCTCTCCTATATGC+TGG + chr1.1:60729913-60729932 MS.gene52628:CDS 50.0%
GGCTTACCACTGTGCTGAAA+AGG - chr1.1:60731105-60731124 None:intergenic 50.0%
TAGTTGAGTATGCCCCGACA+TGG - chr1.1:60731041-60731060 None:intergenic 50.0%
TCTCGGGAATCTCCTAGAAG+TGG - chr1.1:60731603-60731622 None:intergenic 50.0%
TGATGCAGTTCACCATGTCG+GGG + chr1.1:60731026-60731045 MS.gene52628:intron 50.0%
! AAGGACAACAGTGATGGTGC+TGG - chr1.1:60731086-60731105 None:intergenic 50.0%
! TCCTATATGCTGGCTGAGGT+AGG + chr1.1:60729923-60729942 MS.gene52628:intron 50.0%
!! TGGCCATACTTGCTGTCTGA+AGG - chr1.1:60730682-60730701 None:intergenic 50.0%
AAGCACGAAGGCTGTTCGGT+CGG - chr1.1:60731659-60731678 None:intergenic 55.0%
CCTCAGCCAGCATATAGGAG+AGG - chr1.1:60729922-60729941 None:intergenic 55.0%
CTTGGTGAGCCAGGTTCTAC+AGG - chr1.1:60731774-60731793 None:intergenic 55.0%
CTTGGTTTCTTCCGCAGTCC+TGG + chr1.1:60730537-60730556 MS.gene52628:intron 55.0%
GGCTCACCAAGTGAACGCAA+TGG + chr1.1:60731783-60731802 MS.gene52628:CDS 55.0%
! CCTCTCCTATATGCTGGCTG+AGG + chr1.1:60729919-60729938 MS.gene52628:CDS 55.0%
! TTGCGTTCACTTGGTGAGCC+AGG - chr1.1:60731783-60731802 None:intergenic 55.0%
!! TGGTGGGCTGGTCTTATGAG+AGG + chr1.1:60730799-60730818 MS.gene52628:CDS 55.0%
!!! CGTCCTGTTTTTGGTGGCAG+AGG + chr1.1:60731741-60731760 MS.gene52628:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 60729902 60731821 60729902 ID=MS.gene52628
chr1.1 mRNA 60729902 60731821 60729902 ID=MS.gene52628.t1;Parent=MS.gene52628
chr1.1 exon 60729902 60729940 60729902 ID=MS.gene52628.t1.exon1;Parent=MS.gene52628.t1
chr1.1 CDS 60729902 60729940 60729902 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60730027 60730127 60730027 ID=MS.gene52628.t1.exon2;Parent=MS.gene52628.t1
chr1.1 CDS 60730027 60730127 60730027 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60730239 60730340 60730239 ID=MS.gene52628.t1.exon3;Parent=MS.gene52628.t1
chr1.1 CDS 60730239 60730340 60730239 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60730554 60730692 60730554 ID=MS.gene52628.t1.exon4;Parent=MS.gene52628.t1
chr1.1 CDS 60730554 60730692 60730554 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60730790 60730852 60730790 ID=MS.gene52628.t1.exon5;Parent=MS.gene52628.t1
chr1.1 CDS 60730790 60730852 60730790 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60731034 60731117 60731034 ID=MS.gene52628.t1.exon6;Parent=MS.gene52628.t1
chr1.1 CDS 60731034 60731117 60731034 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
chr1.1 exon 60731492 60731821 60731492 ID=MS.gene52628.t1.exon7;Parent=MS.gene52628.t1
chr1.1 CDS 60731492 60731821 60731492 ID=cds.MS.gene52628.t1;Parent=MS.gene52628.t1
Gene Sequence

>MS.gene52628

ATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGGTAGGTTTTAAAGAACTTAGTATGTTTTCTGGATGCTGCTAACATTTGTCACTAGCTTGATGCTGACTTATCTACATCTTATGCAGTTAACCTATCTGAGTGGCATTCTTACCGTATTCTTTTGTGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACGCAGAGTTCAAGAATCACTACCAAGTATGTCTTCTAAACAGATTTTGTCAAGCTATATGCACTGTCTGAGTCTATCTATATACCAGACATGTCTTTTCTATATCTAAACATCTATTTTTGTCCAACTTTTCACAGGCATTCTTTTGCTACCTTGTCCTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGGTATGTCCTAAGTTCTCTTTACTGGTGATTAGTCATTCAGACGTTACCCTTTTTTACTGAGCGATTTTTATTTTGAATGACATCTTTTCATGTCCATAGATGGTATGATAGAACTGCTTTACTGAAGCAGTCCTTGTACTACTTGGTTTGACTGAAGTGTCCTTAACTGTTTTTTTCTTCCTATTCTTGTGCCACACTTGGTTTCTTCCGCAGTCCTGGAACATCTATAGCTGCAAGTTCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTTCCCTTATCCTTCTTATCCAACTTGACTAAAAAATCACAACATCAGAAGATTTCCTTCAGACAGCAAGTATGGCCAAATTTCTATTGAGTGACCTTTTCTGTATTTCTTGTGCTTAATACCAAGGTATGCTGACAAGTGTCTCTTTTGCTTCCCCTCATTTTAGGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCGTATAATCAGGTATGAGCAGTACCACTGAGTTTTGGTTTTGGATATTTGAATAATTGGCCACTGCTTCAGCCAAACAATAAATAGCTATAACTGATCCTATCTATTGGGAAAAAGGTTTGATGGTTGTTGTTGTTGTTGTCACAAATGACGGAATTGATGCATAAAAACTGATCCTATCTATTTGATGCAGTTCACCATGTCGGGGCATACTCAACTACGTAGCAATGCAATCATGATAACCAGCACCATCACTGTTGTCCTTTTCAGCACAGTGGTAAGCCATTAATTTTGCAGTTTCTGACTTTCTTAGACAGTGTCCATTAGTTTCTCCTCACTGCACGGTTTATTTTATCAGTTCTGCATTACTGTTAATCTCTTTTGTATTAAGTTTGAAATAACTTTTTTGTTCATACAAGTATACTTCTTCACAATTTTAGTTCCTGCAACAATTAGTCTTTGGTTTTGGTCCATGAAATGTAGGAAATTCTTTTTGTGCGCAAACATGTTCGAATTAAATATTTGATGTGCTCTTATCATATTTGAACTATGAACAAATTGATTTTTCTACGTCATATGTCGAAACATAACTCATCTATATGAAAAATTGTATATAAATGAAGCTAACACAAGTTAATTACAATTTATCAGGTGTTTGGTTTGCTGACTAAGCCACTCATAAGGCTTCTACTACCTCATCCTAAAATCACAAGCAGCATGACAACCACAGAATCGACTACTCCAAAATCATTCATTGTCCCACTTCTAGGAGATTCCCGAGATTCTGAAGCTGATCTTGAAGGCCATGAAATTCACCGACCGAACAGCCTTCGTGCTTTACTATCAACTCCAACTCACACTGTTCATCGATTATGGCGAAAGTTTGATGATTCATTCATGCGTCCTGTTTTTGGTGGCAGAGGTTTTGTTCCTGTAGAACCTGGCTCACCAAGTGAACGCAATGGTAATCAATGGGGTTGA
Protein sequence

>MS.gene52628.t1

MMLMAYLSYMLAELTYLSGILTVFFCGIVMSHYTWHNVTQSSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLILLGRAAFVFPLSFLSNLTKKSQHQKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHPKITSSMTTTESTTPKSFIVPLLGDSRDSEADLEGHEIHRPNSLRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPSERNGNQWG