AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52648

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52648.t1 MTR_7g093030 96.552 348 6 1 1 348 33 374 0.0 692
MS.gene52648.t1 MTR_7g093030 96.642 268 3 1 1 268 33 294 0.0 535
MS.gene52648.t1 MTR_1g053835 61.064 357 115 8 1 347 80 422 3.81e-139 402
MS.gene52648.t1 MTR_7g098250 53.049 164 76 1 177 339 253 416 1.50e-57 194
MS.gene52648.t1 MTR_1g080330 56.338 142 61 1 177 317 166 307 6.03e-51 174
MS.gene52648.t1 MTR_7g088070 50.725 138 68 0 184 321 48 185 7.17e-48 163
MS.gene52648.t1 MTR_7g115530 52.448 143 67 1 185 326 217 359 1.68e-47 166
MS.gene52648.t1 MTR_2g027860 52.414 145 66 2 186 327 49 193 3.33e-47 163
MS.gene52648.t1 MTR_7g088070 49.296 142 68 1 184 321 48 189 1.42e-45 157
MS.gene52648.t1 MTR_1g080330 56.410 117 50 1 177 292 166 282 8.90e-41 145
MS.gene52648.t1 MTR_7g115530 55.963 109 47 1 185 292 217 325 7.46e-38 138
MS.gene52648.t1 MTR_6g032990 46.053 152 63 3 185 318 41 191 1.14e-37 139
MS.gene52648.t1 MTR_7g068600 47.887 142 69 3 173 310 1 141 6.41e-37 133
MS.gene52648.t1 MTR_2g086450 45.349 172 70 5 169 317 27 197 1.92e-36 136
MS.gene52648.t1 MTR_1g053800 49.650 143 71 1 175 316 165 307 4.91e-35 130
MS.gene52648.t1 MTR_1g053830 58.000 100 41 1 169 268 1 99 2.08e-34 122
MS.gene52648.t1 MTR_5g027440 42.466 146 71 4 186 318 25 170 2.78e-31 119
MS.gene52648.t1 MTR_5g041350 35.032 157 89 1 185 328 14 170 3.78e-31 120
MS.gene52648.t1 MTR_2g027800 40.132 152 81 4 186 333 39 184 9.53e-30 115
MS.gene52648.t1 MTR_6g444980 40.625 160 83 5 179 328 26 183 1.47e-29 117
MS.gene52648.t1 MTR_6g444980 40.645 155 82 4 179 325 26 178 1.10e-28 114
MS.gene52648.t1 MTR_4g081710 35.374 147 79 2 185 317 16 160 1.98e-28 113
MS.gene52648.t1 MTR_2g027800 37.888 161 86 3 186 333 39 198 9.69e-28 110
MS.gene52648.t1 MTR_7g115530 55.294 85 37 1 185 268 217 301 1.43e-27 110
MS.gene52648.t1 MTR_1g090670 33.889 180 98 4 186 350 44 217 1.41e-25 104
MS.gene52648.t1 MTR_7g115530 65.152 66 23 0 185 250 217 282 1.62e-25 105
MS.gene52648.t1 MTR_7g093010 42.657 143 78 2 177 317 204 344 7.45e-25 103
MS.gene52648.t1 MTR_7g115530 66.038 53 18 0 185 237 217 269 4.15e-19 86.3
MS.gene52648.t1 MTR_7g115530 65.385 52 18 0 185 236 217 268 2.87e-18 84.3
MS.gene52648.t1 MTR_2g023580 60.656 61 24 0 182 242 51 111 5.12e-18 82.4
MS.gene52648.t1 MTR_3g064840 47.674 86 42 2 188 271 276 360 1.42e-17 84.0
MS.gene52648.t1 MTR_7g069660 48.101 79 40 1 182 260 67 144 2.97e-17 82.0
MS.gene52648.t1 MTR_8g066310 52.941 68 30 1 188 253 175 242 4.85e-17 81.6
MS.gene52648.t1 MTR_2g084230 46.078 102 41 3 182 270 93 193 5.47e-17 80.9
MS.gene52648.t1 MTR_2g084230 34.946 186 100 6 98 270 16 193 7.88e-17 81.3
MS.gene52648.t1 MTR_3g450310 57.627 59 25 0 184 242 17 75 1.32e-16 77.8
MS.gene52648.t1 MTR_8g086410 54.839 62 28 0 182 243 107 168 1.86e-16 80.5
MS.gene52648.t1 MTR_8g086410 54.839 62 28 0 182 243 105 166 1.87e-16 80.5
MS.gene52648.t1 MTR_1g112370 50.000 78 35 2 169 242 1 78 5.96e-16 78.2
MS.gene52648.t1 MTR_6g071625 58.182 55 23 0 188 242 204 258 1.46e-15 77.4
MS.gene52648.t1 MTR_0223s0040 55.738 61 27 0 182 242 14 74 2.21e-15 75.9
MS.gene52648.t1 MTR_5g029470 58.182 55 23 0 188 242 221 275 2.43e-15 77.0
MS.gene52648.t1 MTR_2g016220 53.226 62 29 0 182 243 85 146 2.51e-15 76.6
MS.gene52648.t1 MTR_2g016220 53.226 62 29 0 182 243 85 146 2.57e-15 76.6
MS.gene52648.t1 MTR_1g021520 52.381 63 30 0 188 250 128 190 2.78e-15 75.9
MS.gene52648.t1 MTR_8g086410 54.237 59 27 0 182 240 107 165 7.48e-15 75.5
MS.gene52648.t1 MTR_2g016220 50.000 66 29 1 182 243 85 150 2.17e-13 70.9
MS.gene52648.t1 MTR_4g021790 53.571 56 25 1 184 239 166 220 1.73e-12 67.4
MS.gene52648.t1 MTR_4g021855 51.613 62 29 1 178 239 160 220 2.28e-12 67.4
MS.gene52648.t1 MTR_2g450070 57.407 54 22 1 186 239 213 265 4.71e-12 67.4
MS.gene52648.t1 MTR_2g450070 57.407 54 22 1 186 239 213 265 5.23e-12 67.4
MS.gene52648.t1 MTR_1g093080 38.776 98 45 1 170 252 180 277 6.04e-12 66.6
MS.gene52648.t1 MTR_4g131580 47.059 85 41 3 186 270 200 280 1.32e-11 66.2
MS.gene52648.t1 MTR_4g113140 49.231 65 33 0 175 239 224 288 1.59e-11 65.5
MS.gene52648.t1 MTR_1g032570 55.357 56 24 1 184 239 129 183 2.23e-11 65.5
MS.gene52648.t1 MTR_1g032570 55.357 56 24 1 184 239 198 252 2.99e-11 65.1
MS.gene52648.t1 MTR_1g013170 59.259 54 21 1 186 239 191 243 3.49e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52648.t1 AT5G06800 54.032 248 96 7 109 350 110 345 5.03e-70 223
MS.gene52648.t1 AT5G06800 52.964 253 96 8 109 350 110 350 1.88e-67 217
MS.gene52648.t1 AT5G29000 53.289 152 67 1 173 320 175 326 1.46e-52 178
MS.gene52648.t1 AT5G29000 53.289 152 67 1 173 320 175 326 1.46e-52 178
MS.gene52648.t1 AT5G29000 53.289 152 67 1 173 320 218 369 2.69e-52 178
MS.gene52648.t1 AT3G04450 44.505 182 90 3 143 320 162 336 1.31e-49 171
MS.gene52648.t1 AT3G04450 44.505 182 90 3 143 320 162 336 1.31e-49 171
MS.gene52648.t1 AT3G04450 44.505 182 90 3 143 320 202 376 2.95e-49 171
MS.gene52648.t1 AT4G28610 54.167 144 64 1 173 314 212 355 1.08e-48 169
MS.gene52648.t1 AT2G01060 50.993 151 72 2 184 332 13 163 1.86e-48 165
MS.gene52648.t1 AT3G13040 45.251 179 89 4 159 328 211 389 2.60e-44 158
MS.gene52648.t1 AT3G13040 45.251 179 89 4 159 328 211 389 2.60e-44 158
MS.gene52648.t1 AT3G13040 45.251 179 89 4 159 328 211 389 2.60e-44 158
MS.gene52648.t1 AT2G20400 53.077 130 60 1 186 314 231 360 2.18e-42 152
MS.gene52648.t1 AT2G20400 53.435 131 59 2 186 314 231 361 7.98e-41 148
MS.gene52648.t1 AT3G04030 46.584 161 68 3 175 317 32 192 6.19e-39 142
MS.gene52648.t1 AT5G06800 56.757 148 57 6 109 250 110 256 5.54e-38 137
MS.gene52648.t1 AT5G18240 45.342 161 70 3 176 318 33 193 9.99e-38 139
MS.gene52648.t1 AT5G18240 45.342 161 70 3 176 318 33 193 9.99e-38 139
MS.gene52648.t1 AT3G04030 45.342 161 69 4 175 317 32 191 5.86e-36 134
MS.gene52648.t1 AT3G24120 42.308 156 70 2 186 321 41 196 2.41e-35 130
MS.gene52648.t1 AT1G69580 42.581 155 63 3 185 317 33 183 7.08e-35 130
MS.gene52648.t1 AT5G18240 44.720 161 69 4 176 318 33 191 1.34e-34 131
MS.gene52648.t1 AT1G69580 41.667 156 64 3 185 317 33 184 8.03e-34 127
MS.gene52648.t1 AT3G04030 44.099 161 66 4 175 317 32 186 1.11e-33 128
MS.gene52648.t1 AT4G13640 41.611 149 71 2 186 321 37 182 1.17e-33 126
MS.gene52648.t1 AT3G24120 41.509 159 70 3 186 321 41 199 2.51e-33 125
MS.gene52648.t1 AT1G79430 44.000 150 73 5 179 321 25 170 3.05e-33 127
MS.gene52648.t1 AT5G45580 41.212 165 66 5 186 324 7 166 3.46e-33 124
MS.gene52648.t1 AT5G45580 41.212 165 66 5 186 324 23 182 3.48e-33 124
MS.gene52648.t1 AT5G18240 42.857 161 68 4 176 318 33 187 2.13e-32 125
MS.gene52648.t1 AT5G18240 42.857 161 68 4 176 318 33 187 2.13e-32 125
MS.gene52648.t1 AT4G13640 40.789 152 71 3 186 321 37 185 1.25e-31 121
MS.gene52648.t1 AT2G01060 49.123 114 56 2 221 332 1 114 4.60e-29 112
MS.gene52648.t1 AT5G29000 56.818 88 36 1 173 258 218 305 6.13e-28 111
MS.gene52648.t1 AT3G04450 45.192 104 50 2 143 246 202 298 8.89e-26 105
MS.gene52648.t1 AT3G12730 37.908 153 82 5 177 317 12 163 4.87e-25 101
MS.gene52648.t1 AT2G42660 56.522 69 30 0 182 250 46 114 6.25e-20 88.2
MS.gene52648.t1 AT3G04030 41.379 116 52 2 218 317 1 116 1.66e-18 85.5
MS.gene52648.t1 AT4G04605 50.000 78 36 1 182 256 10 87 2.61e-17 80.1
MS.gene52648.t1 AT2G02060 63.793 58 21 0 182 239 25 82 1.37e-16 79.0
MS.gene52648.t1 AT2G02060 63.793 58 21 0 182 239 25 82 1.37e-16 79.0
MS.gene52648.t1 AT2G38300 56.452 62 27 0 182 243 50 111 1.99e-16 79.7
MS.gene52648.t1 AT4G17695 52.941 68 30 1 188 253 166 233 2.30e-16 79.3
MS.gene52648.t1 AT1G14600 58.065 62 26 0 182 243 19 80 2.44e-16 78.2
MS.gene52648.t1 AT1G32240 52.941 68 30 1 188 253 215 282 5.74e-16 78.6
MS.gene52648.t1 AT1G79430 38.532 109 58 4 218 321 1 105 7.09e-16 77.4
MS.gene52648.t1 AT1G32240 52.941 68 30 1 188 253 215 282 7.63e-16 78.6
MS.gene52648.t1 AT2G06020 54.386 57 26 0 186 242 86 142 1.53e-15 76.6
MS.gene52648.t1 AT5G16560 45.679 81 39 1 188 263 221 301 1.54e-15 77.8
MS.gene52648.t1 AT2G40260 59.322 59 23 1 185 242 80 138 1.87e-15 77.4
MS.gene52648.t1 AT5G42630 50.000 64 32 0 188 251 107 170 5.80e-15 73.6
MS.gene52648.t1 AT5G42630 50.000 64 32 0 188 251 107 170 1.05e-14 73.9
MS.gene52648.t1 AT3G04030 37.931 116 50 3 218 317 1 110 1.11e-13 71.2
MS.gene52648.t1 AT4G04580 49.180 61 31 0 182 242 10 70 1.61e-13 68.2
MS.gene52648.t1 AT4G04555 51.471 68 28 1 180 242 3 70 5.20e-13 65.1
MS.gene52648.t1 AT4G37180 50.000 64 32 0 176 239 200 263 1.19e-12 68.6
MS.gene52648.t1 AT4G37180 50.000 64 32 0 176 239 207 270 1.53e-12 68.6
MS.gene52648.t1 AT5G18240 35.897 117 53 3 218 318 1 111 1.64e-12 67.8
MS.gene52648.t1 AT2G40970 46.053 76 38 2 166 239 83 157 1.46e-11 64.3
MS.gene52648.t1 AT5G58080 53.333 60 27 1 180 239 188 246 1.51e-11 65.9
MS.gene52648.t1 AT2G03500 49.254 67 31 1 173 239 223 286 4.25e-11 64.3

Find 50 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCATCATTGATTGTATT+TGG 0.166617 7.2:-16274252 None:intergenic
AAGGGAAAACAATCATTTAT+TGG 0.215858 7.2:+16272298 MS.gene52648:CDS
TCCCTTTGTGTCAATCTCTA+AGG 0.220544 7.2:+16272279 MS.gene52648:CDS
CAGCAAAAGTTGTTCTTTGA+TGG 0.257577 7.2:+16272479 MS.gene52648:CDS
ATCATATAAGGTTAATGATT+TGG 0.267300 7.2:+16272253 MS.gene52648:CDS
ATCATCTTCAATATAGCTTT+TGG 0.290192 7.2:-16273178 None:intergenic
TTTGAGTTCTCAATCATATA+AGG 0.290541 7.2:+16272241 MS.gene52648:CDS
CATGCTGCACATCATCTATA+TGG 0.344546 7.2:-16273690 None:intergenic
TAATGGAAATCATGACTATA+TGG 0.366206 7.2:+16272538 MS.gene52648:CDS
AAACTTCCTGCTGAAATTGT+TGG 0.389210 7.2:-16272939 None:intergenic
TTGAGTGTGTGAATCGCCTT+GGG 0.396796 7.2:+16273054 MS.gene52648:CDS
GGAAGTTTATCAACTTCTCT+TGG 0.397953 7.2:+16272954 MS.gene52648:CDS
GTGTTAGACAGTTCAAAGTT+GGG 0.442345 7.2:-16272341 None:intergenic
GTCTAACACTTTGCAAGCAT+TGG 0.457506 7.2:+16272355 MS.gene52648:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.458117 7.2:+16273053 MS.gene52648:CDS
AGTGTTAGACAGTTCAAAGT+TGG 0.458507 7.2:-16272342 None:intergenic
CAAGTAAAACAAGAATTAGA+TGG 0.463217 7.2:+16273006 MS.gene52648:CDS
TTGCAGTGGCTTTCAAATCA+AGG 0.468098 7.2:+16273867 MS.gene52648:intron
AAAAGCTATATTGAAGATGA+TGG 0.473225 7.2:+16273180 MS.gene52648:CDS
CCCTTAGAGATTGACACAAA+GGG 0.473466 7.2:-16272280 None:intergenic
AAGATTGATTATTATCAACT+TGG 0.481452 7.2:-16272220 None:intergenic
AACAAGAATTAGATGGACTA+AGG 0.489147 7.2:+16273013 MS.gene52648:CDS
TTGGTGAAATCTCAATTGAA+TGG 0.505462 7.2:+16272374 MS.gene52648:CDS
GTTCAAAGTTGGGGTCATGC+TGG 0.509873 7.2:-16272331 None:intergenic
CCCTTTGTGTCAATCTCTAA+GGG 0.510278 7.2:+16272280 MS.gene52648:CDS
CTTGGAAGCACTTCTTCTAG+TGG 0.515481 7.2:+16272972 MS.gene52648:CDS
GTTGAGGTTTCTATTTCTGA+AGG 0.516998 7.2:+16274294 MS.gene52648:CDS
TTGAGGTTTCTATTTCTGAA+GGG 0.518136 7.2:+16274295 MS.gene52648:CDS
TTGTCTCCAACAATTTCAGC+AGG 0.521373 7.2:+16272933 MS.gene52648:CDS
AAATATTGCTAAAGATGTTG+AGG 0.533851 7.2:+16274278 MS.gene52648:CDS
AAATTACCTTGAGCTGACTC+TGG 0.535434 7.2:-16273271 None:intergenic
TGAGGTTTCTATTTCTGAAG+GGG 0.541433 7.2:+16274296 MS.gene52648:CDS
CAGAAGCTGGTGACTCGAAA+CGG 0.549320 7.2:-16272151 None:intergenic
TTGGAAGCACTTCTTCTAGT+GGG 0.558294 7.2:+16272973 MS.gene52648:CDS
TATGCAACAGAAAACTGCAT+GGG 0.559407 7.2:+16272179 MS.gene52648:CDS
ATCCGTTTGCAGGTTGCTCG+TGG 0.560326 7.2:+16272858 MS.gene52648:intron
TCCCTTAGAGATTGACACAA+AGG 0.575040 7.2:-16272281 None:intergenic
TTATGCAACAGAAAACTGCA+TGG 0.589899 7.2:+16272178 MS.gene52648:CDS
TTGTATTTGGAGTATTGAAG+AGG 0.600647 7.2:-16274239 None:intergenic
TGTTAGACAGTTCAAAGTTG+GGG 0.605516 7.2:-16272340 None:intergenic
GCGTCTTCATGAACAACTAG+AGG 0.618964 7.2:+16273921 MS.gene52648:CDS
TTGAAGATGATGGACTCTGA+AGG 0.627815 7.2:+16273190 MS.gene52648:CDS
TTCATGCCAGAGTCAGCTCA+AGG 0.639842 7.2:+16273265 MS.gene52648:CDS
CAATTGCGACTTGAGGAACA+AGG 0.653307 7.2:+16274168 MS.gene52648:CDS
AACGTTACAATTGCGACTTG+AGG 0.662143 7.2:+16274161 MS.gene52648:CDS
AACTTCAATTAGATGCACAA+AGG 0.668848 7.2:+16273899 MS.gene52648:CDS
TGATGAGCTGTTGCTAACTG+AGG 0.672832 7.2:-16272507 None:intergenic
ATAGATGATGTGCAGCATGT+TGG 0.702726 7.2:+16273694 MS.gene52648:CDS
GAGTGTGTGAATCGCCTTGG+GGG 0.715113 7.2:+16273056 MS.gene52648:CDS
TGAGTGTGTGAATCGCCTTG+GGG 0.716876 7.2:+16273055 MS.gene52648:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACCTTATTTTTTATTTTATA+TGG + chr7.2:16274080-16274099 MS.gene52648:intron 10.0%
!!! CCTTATTTTTTATTTTATAT+GGG + chr7.2:16274081-16274100 MS.gene52648:intron 10.0%
!! CCCATATAAAATAAAAAATA+AGG - chr7.2:16274084-16274103 None:intergenic 15.0%
!!! AAAATTTATTCAAGTTTTCT+GGG - chr7.2:16272418-16272437 None:intergenic 15.0%
!! AAGATTGATTATTATCAACT+TGG - chr7.2:16272223-16272242 None:intergenic 20.0%
!! AAGTTCATAAAGAAAATGAA+TGG - chr7.2:16273957-16273976 None:intergenic 20.0%
!! AGTATAAATATGTTATGACA+CGG - chr7.2:16272674-16272693 None:intergenic 20.0%
!! ATAAATGATTGTATCACATT+AGG + chr7.2:16272802-16272821 MS.gene52648:intron 20.0%
!! ATCATATAAGGTTAATGATT+TGG + chr7.2:16272253-16272272 MS.gene52648:CDS 20.0%
!! GTTTAGGTAAAAGAAAAAAT+AGG - chr7.2:16273734-16273753 None:intergenic 20.0%
!! TTAGAGTCATATAACATATA+AGG - chr7.2:16273818-16273837 None:intergenic 20.0%
!! TTTCTAATCATATTCTTTCT+TGG + chr7.2:16274125-16274144 MS.gene52648:intron 20.0%
!!! AACTTGAATAAATTTTCATG+TGG + chr7.2:16272422-16272441 MS.gene52648:CDS 20.0%
!!! ACATTAGTTTGTTCAATATT+AGG - chr7.2:16273639-16273658 None:intergenic 20.0%
!!! ACTTGAATAAATTTTCATGT+GGG + chr7.2:16272423-16272442 MS.gene52648:CDS 20.0%
!!! GAAAATTTATTCAAGTTTTC+TGG - chr7.2:16272419-16272438 None:intergenic 20.0%
! AAAAAACAGTTTGTAAGGTA+AGG + chr7.2:16274029-16274048 MS.gene52648:intron 25.0%
! AAAAGCTATATTGAAGATGA+TGG + chr7.2:16273180-16273199 MS.gene52648:CDS 25.0%
! AAATATTGCTAAAGATGTTG+AGG + chr7.2:16274278-16274297 MS.gene52648:CDS 25.0%
! AAGGGAAAACAATCATTTAT+TGG + chr7.2:16272298-16272317 MS.gene52648:CDS 25.0%
! ACATTATTCACTATGAACAA+TGG - chr7.2:16273467-16273486 None:intergenic 25.0%
! ATGAAATTAATCAAGCAACT+TGG - chr7.2:16273790-16273809 None:intergenic 25.0%
! CAAGTAAAACAAGAATTAGA+TGG + chr7.2:16273006-16273025 MS.gene52648:CDS 25.0%
! CATTATTCACTATGAACAAT+GGG - chr7.2:16273466-16273485 None:intergenic 25.0%
! CTCAACATGAAAAATAAACT+AGG - chr7.2:16273340-16273359 None:intergenic 25.0%
! GAAAGAAAATAAGCACATTT+GGG - chr7.2:16273595-16273614 None:intergenic 25.0%
! TAATGGAAATCATGACTATA+TGG + chr7.2:16272538-16272557 MS.gene52648:CDS 25.0%
! TCGTTAAAAAACAGTTTGTA+AGG + chr7.2:16274024-16274043 MS.gene52648:intron 25.0%
! TGAAAGAAAATAAGCACATT+TGG - chr7.2:16273596-16273615 None:intergenic 25.0%
! TGAATAATGTCTGGTTAAAT+AGG + chr7.2:16273477-16273496 MS.gene52648:intron 25.0%
!! AGCTCATCATTTTGTAATAA+TGG + chr7.2:16272521-16272540 MS.gene52648:CDS 25.0%
!! ATCATCTTCAATATAGCTTT+TGG - chr7.2:16273181-16273200 None:intergenic 25.0%
!! ATGACTTTTCACATGAAATA+TGG - chr7.2:16273221-16273240 None:intergenic 25.0%
!! GTATCATCATTGATTGTATT+TGG - chr7.2:16274255-16274274 None:intergenic 25.0%
!! TAAGAGTATAAAAGCAGTTT+AGG - chr7.2:16273750-16273769 None:intergenic 25.0%
!! TATTGTTTTCTTGCTTATAG+AGG + chr7.2:16273150-16273169 MS.gene52648:intron 25.0%
!! TTTGAGTTCTCAATCATATA+AGG + chr7.2:16272241-16272260 MS.gene52648:CDS 25.0%
!! TTTGTTATAGTGTTTGTCAA+TGG + chr7.2:16273417-16273436 MS.gene52648:intron 25.0%
!!! CTGTTTTTTAACGATGATTT+AGG - chr7.2:16274018-16274037 None:intergenic 25.0%
AAACTAATGTGTCCAATTTC+AGG + chr7.2:16273649-16273668 MS.gene52648:intron 30.0%
AAATTAATCAAGCAACTTGG+TGG - chr7.2:16273787-16273806 None:intergenic 30.0%
AACTAATGTGTCCAATTTCA+GGG + chr7.2:16273650-16273669 MS.gene52648:intron 30.0%
AACTTCAATTAGATGCACAA+AGG + chr7.2:16273899-16273918 MS.gene52648:CDS 30.0%
CATAAAGAAAATGAATGGCA+AGG - chr7.2:16273952-16273971 None:intergenic 30.0%
TATAGTGTTTGTCAATGGAT+AGG + chr7.2:16273422-16273441 MS.gene52648:intron 30.0%
TCAAACTTCTAACATTCTAG+TGG - chr7.2:16273547-16273566 None:intergenic 30.0%
TGTTCATAGTGAATAATGTC+TGG + chr7.2:16273468-16273487 MS.gene52648:intron 30.0%
TTGGTGAAATCTCAATTGAA+TGG + chr7.2:16272374-16272393 MS.gene52648:CDS 30.0%
TTTGTCAATGGATAGGATAT+AGG + chr7.2:16273429-16273448 MS.gene52648:intron 30.0%
! GGTCTGAAATGAGTTTATAA+CGG - chr7.2:16274063-16274082 None:intergenic 30.0%
! GTCTGAAATGAGTTTATAAC+GGG - chr7.2:16274062-16274081 None:intergenic 30.0%
! TTTCATGTGGGAATTTTTCT+GGG + chr7.2:16272435-16272454 MS.gene52648:CDS 30.0%
! TTTTCATGTGGGAATTTTTC+TGG + chr7.2:16272434-16272453 MS.gene52648:CDS 30.0%
!! AACAAGAATTAGATGGACTA+AGG + chr7.2:16273013-16273032 MS.gene52648:CDS 30.0%
!! TTGAGGTTTCTATTTCTGAA+GGG + chr7.2:16274295-16274314 MS.gene52648:CDS 30.0%
!! TTGTATTTGGAGTATTGAAG+AGG - chr7.2:16274242-16274261 None:intergenic 30.0%
!!! AACAACTTTTGCTGTTCAAT+TGG - chr7.2:16272473-16272492 None:intergenic 30.0%
!!! TTTTGCTGTTCAATTGGAAA+AGG - chr7.2:16272467-16272486 None:intergenic 30.0%
AAACTTCCTGCTGAAATTGT+TGG - chr7.2:16272942-16272961 None:intergenic 35.0%
AGTGTTAGACAGTTCAAAGT+TGG - chr7.2:16272345-16272364 None:intergenic 35.0%
CAGCAAAAGTTGTTCTTTGA+TGG + chr7.2:16272479-16272498 MS.gene52648:CDS 35.0%
GGAAGTTTATCAACTTCTCT+TGG + chr7.2:16272954-16272973 MS.gene52648:CDS 35.0%
GTGTTAGACAGTTCAAAGTT+GGG - chr7.2:16272344-16272363 None:intergenic 35.0%
TAATTATAGCATCCGTTTGC+AGG + chr7.2:16272848-16272867 MS.gene52648:intron 35.0%
TATGCAACAGAAAACTGCAT+GGG + chr7.2:16272179-16272198 MS.gene52648:CDS 35.0%
TGTTAGACAGTTCAAAGTTG+GGG - chr7.2:16272343-16272362 None:intergenic 35.0%
TTATGCAACAGAAAACTGCA+TGG + chr7.2:16272178-16272197 MS.gene52648:CDS 35.0%
TTGTCAGATTTCCCTGAAAT+TGG - chr7.2:16273664-16273683 None:intergenic 35.0%
!! GTTGAGGTTTCTATTTCTGA+AGG + chr7.2:16274294-16274313 MS.gene52648:CDS 35.0%
!! TCAAGTTTTCTGGGAATCTA+AGG - chr7.2:16272409-16272428 None:intergenic 35.0%
!! TGAGGTTTCTATTTCTGAAG+GGG + chr7.2:16274296-16274315 MS.gene52648:CDS 35.0%
AACGATCAAGATACTACTGG+AGG + chr7.2:16272626-16272645 MS.gene52648:intron 40.0%
AACGTTACAATTGCGACTTG+AGG + chr7.2:16274161-16274180 MS.gene52648:CDS 40.0%
ATAGATGATGTGCAGCATGT+TGG + chr7.2:16273694-16273713 MS.gene52648:CDS 40.0%
CATGCTGCACATCATCTATA+TGG - chr7.2:16273693-16273712 None:intergenic 40.0%
CCCTTAGAGATTGACACAAA+GGG - chr7.2:16272283-16272302 None:intergenic 40.0%
CCCTTTGTGTCAATCTCTAA+GGG + chr7.2:16272280-16272299 MS.gene52648:CDS 40.0%
GTCTAACACTTTGCAAGCAT+TGG + chr7.2:16272355-16272374 MS.gene52648:CDS 40.0%
GTTGCATAAAAAGCAGAAGC+TGG - chr7.2:16272167-16272186 None:intergenic 40.0%
TCCAACGATCAAGATACTAC+TGG + chr7.2:16272623-16272642 MS.gene52648:intron 40.0%
TCCAGTAGTATCTTGATCGT+TGG - chr7.2:16272627-16272646 None:intergenic 40.0%
TCCCTTAGAGATTGACACAA+AGG - chr7.2:16272284-16272303 None:intergenic 40.0%
TCCCTTTGTGTCAATCTCTA+AGG + chr7.2:16272279-16272298 MS.gene52648:CDS 40.0%
TTGAGAATCCTTGTGTCTCA+CGG + chr7.2:16272697-16272716 MS.gene52648:intron 40.0%
TTGCAGTGGCTTTCAAATCA+AGG + chr7.2:16273867-16273886 MS.gene52648:intron 40.0%
TTGTCTCCAACAATTTCAGC+AGG + chr7.2:16272933-16272952 MS.gene52648:CDS 40.0%
! AAATTACCTTGAGCTGACTC+TGG - chr7.2:16273274-16273293 None:intergenic 40.0%
!! ACACTACTCTTGATTTGCAG+TGG + chr7.2:16273853-16273872 MS.gene52648:intron 40.0%
!! TTGAAGATGATGGACTCTGA+AGG + chr7.2:16273190-16273209 MS.gene52648:CDS 40.0%
!! TTGGAAGCACTTCTTCTAGT+GGG + chr7.2:16272973-16272992 MS.gene52648:CDS 40.0%
ATTCAACGACCAAGCTCTAC+TGG - chr7.2:16272600-16272619 None:intergenic 45.0%
CAATTGCGACTTGAGGAACA+AGG + chr7.2:16274168-16274187 MS.gene52648:CDS 45.0%
GATCAAGATACTACTGGAGG+TGG + chr7.2:16272629-16272648 MS.gene52648:intron 45.0%
GCGTCTTCATGAACAACTAG+AGG + chr7.2:16273921-16273940 MS.gene52648:CDS 45.0%
GTTATGACACGGATCCTCTT+CGG - chr7.2:16272663-16272682 None:intergenic 45.0%
TGAGAATCCTTGTGTCTCAC+GGG + chr7.2:16272698-16272717 MS.gene52648:intron 45.0%
TGATGAGCTGTTGCTAACTG+AGG - chr7.2:16272510-16272529 None:intergenic 45.0%
TTGAGTGTGTGAATCGCCTT+GGG + chr7.2:16273054-16273073 MS.gene52648:CDS 45.0%
!! CTTGGAAGCACTTCTTCTAG+TGG + chr7.2:16272972-16272991 MS.gene52648:CDS 45.0%
ACTTACTATCAGCACCCCCA+AGG - chr7.2:16273073-16273092 None:intergenic 50.0%
ATCCACGAGCAACCTGCAAA+CGG - chr7.2:16272863-16272882 None:intergenic 50.0%
CAAGATACTACTGGAGGTGG+TGG + chr7.2:16272632-16272651 MS.gene52648:intron 50.0%
CAGAAGCTGGTGACTCGAAA+CGG - chr7.2:16272154-16272173 None:intergenic 50.0%
GAGAATCCTTGTGTCTCACG+GGG + chr7.2:16272699-16272718 MS.gene52648:intron 50.0%
GTTCAAAGTTGGGGTCATGC+TGG - chr7.2:16272334-16272353 None:intergenic 50.0%
GTTGAGTGTGTGAATCGCCT+TGG + chr7.2:16273053-16273072 MS.gene52648:CDS 50.0%
TGAGTGTGTGAATCGCCTTG+GGG + chr7.2:16273055-16273074 MS.gene52648:CDS 50.0%
TTCATGCCAGAGTCAGCTCA+AGG + chr7.2:16273265-16273284 MS.gene52648:CDS 50.0%
TTTCTTCCCCGTGAGACACA+AGG - chr7.2:16272708-16272727 None:intergenic 50.0%
ACGACCAAGCTCTACTGGAG+AGG - chr7.2:16272595-16272614 None:intergenic 55.0%
ATCCGTTTGCAGGTTGCTCG+TGG + chr7.2:16272858-16272877 MS.gene52648:intron 55.0%
GAGTGTGTGAATCGCCTTGG+GGG + chr7.2:16273056-16273075 MS.gene52648:CDS 55.0%
GCAGCCTCTCCAGTAGAGCT+TGG + chr7.2:16272588-16272607 MS.gene52648:intron 60.0%
!! AGGTGGTGGAGAGACCGAAG+AGG + chr7.2:16272646-16272665 MS.gene52648:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16272146 16274335 16272146 ID=MS.gene52648
chr7.2 mRNA 16272146 16274335 16272146 ID=MS.gene52648.t1;Parent=MS.gene52648
chr7.2 exon 16272146 16272559 16272146 ID=MS.gene52648.t1.exon1;Parent=MS.gene52648.t1
chr7.2 CDS 16272146 16272559 16272146 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
chr7.2 exon 16272870 16273086 16272870 ID=MS.gene52648.t1.exon2;Parent=MS.gene52648.t1
chr7.2 CDS 16272870 16273086 16272870 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
chr7.2 exon 16273170 16273286 16273170 ID=MS.gene52648.t1.exon3;Parent=MS.gene52648.t1
chr7.2 CDS 16273170 16273286 16273170 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
chr7.2 exon 16273671 16273725 16273671 ID=MS.gene52648.t1.exon4;Parent=MS.gene52648.t1
chr7.2 CDS 16273671 16273725 16273671 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
chr7.2 exon 16273873 16273942 16273873 ID=MS.gene52648.t1.exon5;Parent=MS.gene52648.t1
chr7.2 CDS 16273873 16273942 16273873 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
chr7.2 exon 16274153 16274335 16274153 ID=MS.gene52648.t1.exon6;Parent=MS.gene52648.t1
chr7.2 CDS 16274153 16274335 16274153 ID=cds.MS.gene52648.t1;Parent=MS.gene52648.t1
Gene Sequence

>MS.gene52648

ATGAGCCGTTTCGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAACTGCATGGGATTTGCAGAATTTGATCACCAAGTTGATAATAATCAATCTTTGAGTTCTCAATCATATAAGGTTAATGATTTGGAATTCCCTTTGTGTCAATCTCTAAGGGAAAACAATCATTTATTGGATGCATCAAACCAGCATGACCCCAACTTTGAACTGTCTAACACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCAACACCTTAGATTCCCAGAAAACTTGAATAAATTTTCATGTGGGAATTTTTCTGGGAGCAAGCCTTTTCCAATTGAACAGCAAAAGTTGTTCTTTGATGGTCTTGCCTCAGTTAGCAACAGCTCATCATTTTGTAATAATGGAAATCATGACTATATGGTAAGTAGTTTTGCAAAATGAGTCTTCTGCAGCCTCTCCAGTAGAGCTTGGTCGTTGAATTAATCCAACGATCAAGATACTACTGGAGGTGGTGGAGAGACCGAAGAGGATCCGTGTCATAACATATTTATACTATATTGAGAATCCTTGTGTCTCACGGGGAAGAAATCGTCGAAAGAATCTATATTAGTTACAGTTTATACTTTTTTGTGTTCAATTATTGAGCATCAATAACATCTAACATAAATGATTGTATCACATTAGGCATACATCAACGAATCGCATGTCTAATTATAGCATCCGTTTGCAGGTTGCTCGTGGATCTTATCATTTATCTGTTGAGCAACTGAATTTCTCTTCTCAGCATGAGAAGTTGTCTCCAACAATTTCAGCAGGAAGTTTATCAACTTCTCTTGGAAGCACTTCTTCTAGTGGGAATGTAGTCTCAAGTAAAACAAGAATTAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGCTGATAGTAAGTATAGCTTTCAAAATTTGTCAATTGAAAAAACAAATGTTAATATCTGATATTCTTTTCTATTGTTTTCTTGCTTATAGAGGCAACACCAAAAGCTATATTGAAGATGATGGACTCTGAAGGCTTGACCATATTTCATGTGAAAAGTCATTTGCAGAAATATAGAACTGCAAAATTCATGCCAGAGTCAGCTCAAGGTAATTTCTCTTTTTCTTTAGCATCATTGTAGACATTCTAGTGTAGTTTGCCTAGTTTATTTTTCATGTTGAGTATATTTTTTGTATTTTTGAATTTACTAGCATTCATGTCATAAGTGATAAGAAAATGTTTGTTATAGTGTTTGTCAATGGATAGGATATAGGTTTATCTTTTTCCCATTGTTCATAGTGAATAATGTCTGGTTAAATAGGCTTCAAATATAAGAAGTTGCAATGCAGAATAAATGTATTTATATCCACTAGAATGTTAGAAGTTTGAACTTCAATTATTCATAAACTATTGTCCCAAATGTGCTTATTTTCTTTCATATTATCTATCATATTGACTCCTAATATTGAACAAACTAATGTGTCCAATTTCAGGGAAATCTGACAAAAGAATCCATATAGATGATGTGCAGCATGTTGGTGTTAAAACGTAATCCTATTTTTTCTTTTACCTAAACTGCTTTTATACTCTTATGATTTTAGTATTTCCACCAAGTTGCTTGATTAATTTCATATGAACCTTATATGTTATATGACTCTAAAAATCTACTAAATTTACACTACTCTTGATTTGCAGTGGCTTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTAGAGGTATATCCTTGCCATTCATTTTCTTTATGAACTTTGTTGAACTCTGATACTAAATTGAATTTTTATATCGAACCTAAATCATCGTTAAAAAACAGTTTGTAAGGTAAGGATCGTCACCCGTTATAAACTCATTTCAGACCTTATTTTTTATTTTATATGGGAACTTACTTTTATCTAATACTTTTCTAATCATATTCTTTCTTGGTCTAGATTCAGAGAACGTTACAATTGCGACTTGAGGAACAAGGCAGACAGCTGAAAAAAATGTTTGATCAGCAGCAGAAGACATGTAATAACCTCTTCAATACTCCAAATACAATCAATGATGATACAAAAAATATTGCTAAAGATGTTGAGGTTTCTATTTCTGAAGGGGCTGAACACATAATTTGA
Protein sequence

>MS.gene52648.t1

MSRFESPASAFYATENCMGFAEFDHQVDNNQSLSSQSYKVNDLEFPLCQSLRENNHLLDASNQHDPNFELSNTLQALVKSQLNGNQHLRFPENLNKFSCGNFSGSKPFPIEQQKLFFDGLASVSNSSSFCNNGNHDYMVARGSYHLSVEQLNFSSQHEKLSPTISAGSLSTSLGSTSSSGNVVSSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSEGLTIFHVKSHLQKYRTAKFMPESAQGKSDKRIHIDDVQHVGVKTGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRLEEQGRQLKKMFDQQQKTCNNLFNTPNTINDDTKNIAKDVEVSISEGAEHII