Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52790.t1 | XP_013462245.1 | 99.6 | 544 | 2 | 0 | 1 | 544 | 1 | 544 | 0.00E+00 | 1120.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52790.t1 | Q00624 | 53.8 | 541 | 237 | 5 | 3 | 534 | 4 | 540 | 1.6e-169 | 597.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52790.t1 | A0A072VDP0 | 99.6 | 544 | 2 | 0 | 1 | 544 | 1 | 544 | 0.0e+00 | 1120.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052774 | MS.gene52790 | 0.810403 | 1.17E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene52790 | MS.gene28548 | PPI |
MS.gene44958 | MS.gene52790 | PPI |
MS.gene52790 | MS.gene87346 | PPI |
MS.gene011879 | MS.gene52790 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52790.t1 | MTR_3g115050 | 99.632 | 544 | 2 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1114 |
MS.gene52790.t1 | MTR_1g026410 | 85.055 | 542 | 77 | 1 | 7 | 544 | 2 | 543 | 0.0 | 942 |
MS.gene52790.t1 | MTR_4g075690 | 74.906 | 534 | 133 | 1 | 11 | 544 | 11 | 543 | 0.0 | 849 |
MS.gene52790.t1 | MTR_4g049390 | 71.042 | 518 | 150 | 0 | 23 | 540 | 20 | 537 | 0.0 | 793 |
MS.gene52790.t1 | MTR_2g088080 | 72.921 | 517 | 140 | 0 | 23 | 539 | 23 | 539 | 0.0 | 785 |
MS.gene52790.t1 | MTR_4g048350 | 69.498 | 518 | 157 | 1 | 23 | 540 | 20 | 536 | 0.0 | 771 |
MS.gene52790.t1 | MTR_4g132320 | 70.872 | 539 | 156 | 1 | 7 | 544 | 7 | 545 | 0.0 | 763 |
MS.gene52790.t1 | MTR_4g075690 | 73.973 | 438 | 113 | 1 | 11 | 448 | 11 | 447 | 0.0 | 684 |
MS.gene52790.t1 | MTR_2g088080 | 71.397 | 458 | 131 | 0 | 82 | 539 | 1 | 458 | 0.0 | 674 |
MS.gene52790.t1 | MTR_8g479390 | 60.928 | 517 | 199 | 2 | 25 | 540 | 26 | 540 | 0.0 | 644 |
MS.gene52790.t1 | MTR_5g018270 | 59.923 | 519 | 204 | 2 | 22 | 540 | 23 | 537 | 0.0 | 627 |
MS.gene52790.t1 | MTR_8g479380 | 56.809 | 514 | 219 | 3 | 24 | 536 | 23 | 534 | 0.0 | 609 |
MS.gene52790.t1 | MTR_4g083190 | 53.008 | 532 | 241 | 4 | 11 | 534 | 8 | 538 | 0.0 | 561 |
MS.gene52790.t1 | MTR_4g083210 | 52.052 | 536 | 249 | 5 | 3 | 534 | 1 | 532 | 0.0 | 560 |
MS.gene52790.t1 | MTR_3g083440 | 51.481 | 540 | 250 | 5 | 3 | 534 | 1 | 536 | 0.0 | 550 |
MS.gene52790.t1 | MTR_3g083390 | 51.481 | 540 | 250 | 5 | 3 | 534 | 1 | 536 | 0.0 | 549 |
MS.gene52790.t1 | MTR_3g083430 | 51.296 | 540 | 251 | 5 | 3 | 534 | 1 | 536 | 0.0 | 547 |
MS.gene52790.t1 | MTR_3g083400 | 51.296 | 540 | 251 | 5 | 3 | 534 | 1 | 536 | 0.0 | 546 |
MS.gene52790.t1 | MTR_3g083450 | 52.703 | 518 | 236 | 4 | 25 | 534 | 21 | 537 | 0.0 | 542 |
MS.gene52790.t1 | MTR_4g101650 | 52.294 | 545 | 239 | 7 | 11 | 535 | 8 | 551 | 0.0 | 533 |
MS.gene52790.t1 | MTR_3g008580 | 51.705 | 528 | 234 | 7 | 27 | 534 | 26 | 552 | 1.28e-180 | 521 |
MS.gene52790.t1 | MTR_7g051440 | 52.632 | 532 | 226 | 9 | 27 | 537 | 26 | 552 | 8.43e-179 | 517 |
MS.gene52790.t1 | MTR_3g083410 | 52.033 | 492 | 227 | 4 | 51 | 534 | 10 | 500 | 5.72e-176 | 506 |
MS.gene52790.t1 | MTR_1g090707 | 48.106 | 528 | 262 | 7 | 19 | 535 | 12 | 538 | 8.71e-162 | 473 |
MS.gene52790.t1 | MTR_4g133150 | 58.654 | 208 | 67 | 2 | 134 | 339 | 21 | 211 | 1.14e-71 | 228 |
MS.gene52790.t1 | MTR_5g020620 | 30.351 | 570 | 347 | 18 | 5 | 533 | 1 | 561 | 8.13e-61 | 210 |
MS.gene52790.t1 | MTR_5g020600 | 29.550 | 555 | 335 | 19 | 20 | 533 | 27 | 566 | 3.34e-57 | 201 |
MS.gene52790.t1 | MTR_3g462760 | 28.014 | 564 | 363 | 13 | 5 | 533 | 1 | 556 | 1.24e-54 | 193 |
MS.gene52790.t1 | MTR_5g069680 | 27.866 | 567 | 364 | 16 | 3 | 533 | 1 | 558 | 1.14e-53 | 191 |
MS.gene52790.t1 | MTR_5g081810 | 29.026 | 534 | 336 | 13 | 35 | 533 | 4 | 529 | 3.53e-53 | 189 |
MS.gene52790.t1 | MTR_4g015120 | 27.437 | 554 | 365 | 12 | 11 | 533 | 10 | 557 | 8.44e-50 | 180 |
MS.gene52790.t1 | MTR_3g078740 | 25.413 | 606 | 348 | 21 | 11 | 537 | 8 | 588 | 1.95e-46 | 172 |
MS.gene52790.t1 | MTR_3g078700 | 26.496 | 585 | 329 | 20 | 5 | 537 | 4 | 539 | 1.64e-45 | 168 |
MS.gene52790.t1 | MTR_8g091390 | 25.818 | 581 | 335 | 18 | 20 | 538 | 26 | 572 | 1.07e-43 | 164 |
MS.gene52790.t1 | MTR_2g008330 | 27.533 | 523 | 337 | 15 | 51 | 533 | 59 | 579 | 3.11e-42 | 159 |
MS.gene52790.t1 | MTR_5g073210 | 28.846 | 572 | 342 | 21 | 12 | 533 | 4 | 560 | 3.15e-42 | 159 |
MS.gene52790.t1 | MTR_3g101640 | 29.084 | 502 | 302 | 16 | 44 | 499 | 44 | 537 | 2.20e-40 | 154 |
MS.gene52790.t1 | MTR_7g458880 | 24.357 | 583 | 380 | 16 | 2 | 533 | 8 | 580 | 5.23e-40 | 153 |
MS.gene52790.t1 | MTR_3g101635 | 29.006 | 493 | 298 | 15 | 51 | 499 | 48 | 532 | 2.31e-39 | 151 |
MS.gene52790.t1 | MTR_3g071890 | 27.745 | 501 | 314 | 14 | 51 | 510 | 54 | 547 | 6.73e-39 | 150 |
MS.gene52790.t1 | MTR_8g027375 | 26.121 | 513 | 341 | 11 | 30 | 506 | 34 | 544 | 1.55e-38 | 149 |
MS.gene52790.t1 | MTR_7g065980 | 28.827 | 503 | 299 | 20 | 47 | 498 | 42 | 536 | 2.64e-38 | 148 |
MS.gene52790.t1 | MTR_3g078730 | 24.826 | 576 | 341 | 16 | 10 | 537 | 7 | 538 | 4.77e-38 | 147 |
MS.gene52790.t1 | MTR_7g060460 | 23.827 | 554 | 367 | 15 | 30 | 533 | 33 | 581 | 1.18e-36 | 144 |
MS.gene52790.t1 | MTR_7g058690 | 24.368 | 554 | 363 | 17 | 30 | 533 | 33 | 580 | 2.73e-36 | 142 |
MS.gene52790.t1 | MTR_5g083360 | 25.992 | 504 | 309 | 15 | 48 | 499 | 42 | 533 | 2.04e-35 | 140 |
MS.gene52790.t1 | MTR_7g062250 | 24.682 | 551 | 362 | 16 | 30 | 533 | 34 | 578 | 6.20e-35 | 139 |
MS.gene52790.t1 | MTR_7g062310 | 25.095 | 526 | 339 | 16 | 21 | 499 | 42 | 559 | 1.06e-33 | 135 |
MS.gene52790.t1 | MTR_7g065970 | 25.824 | 546 | 336 | 18 | 1 | 493 | 1 | 530 | 2.35e-33 | 134 |
MS.gene52790.t1 | MTR_4g064530 | 25.382 | 524 | 320 | 18 | 29 | 499 | 46 | 551 | 5.58e-33 | 133 |
MS.gene52790.t1 | MTR_4g019225 | 26.316 | 551 | 347 | 16 | 34 | 533 | 30 | 572 | 1.26e-31 | 129 |
MS.gene52790.t1 | MTR_4g064530 | 24.855 | 519 | 320 | 18 | 30 | 493 | 44 | 547 | 1.14e-30 | 126 |
MS.gene52790.t1 | MTR_4g133160 | 51.376 | 109 | 39 | 1 | 415 | 523 | 1 | 95 | 7.64e-29 | 110 |
MS.gene52790.t1 | MTR_5g018290 | 62.121 | 66 | 25 | 0 | 475 | 540 | 5 | 70 | 4.24e-23 | 93.2 |
MS.gene52790.t1 | MTR_5g081790 | 28.462 | 260 | 153 | 8 | 258 | 491 | 168 | 420 | 3.72e-12 | 68.9 |
MS.gene52790.t1 | MTR_5g081790 | 24.868 | 189 | 126 | 5 | 8 | 188 | 6 | 186 | 8.99e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52790.t1 | AT1G76160 | 79.777 | 539 | 108 | 1 | 6 | 544 | 4 | 541 | 0.0 | 908 |
MS.gene52790.t1 | AT1G41830 | 79.104 | 536 | 111 | 1 | 9 | 544 | 8 | 542 | 0.0 | 894 |
MS.gene52790.t1 | AT1G21850 | 74.187 | 523 | 133 | 2 | 19 | 541 | 18 | 538 | 0.0 | 814 |
MS.gene52790.t1 | AT1G21860 | 70.130 | 539 | 155 | 3 | 2 | 540 | 5 | 537 | 0.0 | 796 |
MS.gene52790.t1 | AT4G22010 | 69.444 | 540 | 161 | 2 | 6 | 544 | 5 | 541 | 0.0 | 781 |
MS.gene52790.t1 | AT4G38420 | 67.844 | 538 | 167 | 3 | 12 | 543 | 12 | 549 | 0.0 | 760 |
MS.gene52790.t1 | AT4G28090 | 62.152 | 539 | 192 | 6 | 9 | 540 | 8 | 541 | 0.0 | 692 |
MS.gene52790.t1 | AT4G38420 | 66.596 | 470 | 151 | 3 | 12 | 475 | 12 | 481 | 0.0 | 645 |
MS.gene52790.t1 | AT5G66920 | 58.189 | 519 | 215 | 1 | 22 | 540 | 29 | 545 | 0.0 | 637 |
MS.gene52790.t1 | AT4G38420 | 67.043 | 443 | 140 | 3 | 12 | 448 | 12 | 454 | 0.0 | 608 |
MS.gene52790.t1 | AT1G55570 | 54.917 | 539 | 233 | 4 | 10 | 539 | 9 | 546 | 0.0 | 592 |
MS.gene52790.t1 | AT3G13400 | 54.851 | 536 | 232 | 5 | 11 | 538 | 9 | 542 | 0.0 | 582 |
MS.gene52790.t1 | AT3G13400 | 54.851 | 536 | 232 | 5 | 11 | 538 | 9 | 542 | 0.0 | 582 |
MS.gene52790.t1 | AT1G55560 | 53.918 | 536 | 237 | 5 | 11 | 538 | 8 | 541 | 0.0 | 578 |
MS.gene52790.t1 | AT4G37160 | 53.817 | 524 | 236 | 3 | 22 | 544 | 23 | 541 | 0.0 | 572 |
MS.gene52790.t1 | AT2G23630 | 54.943 | 526 | 233 | 3 | 17 | 542 | 23 | 544 | 0.0 | 569 |
MS.gene52790.t1 | AT2G23630 | 54.943 | 526 | 233 | 3 | 17 | 542 | 18 | 539 | 0.0 | 569 |
MS.gene52790.t1 | AT3G13390 | 55.556 | 522 | 222 | 4 | 26 | 538 | 24 | 544 | 0.0 | 568 |
MS.gene52790.t1 | AT5G48450 | 52.865 | 541 | 238 | 10 | 12 | 537 | 8 | 546 | 0.0 | 546 |
MS.gene52790.t1 | AT5G48450 | 52.865 | 541 | 238 | 10 | 12 | 537 | 8 | 546 | 0.0 | 546 |
MS.gene52790.t1 | AT4G12420 | 52.102 | 547 | 241 | 7 | 11 | 537 | 6 | 551 | 0.0 | 544 |
MS.gene52790.t1 | AT4G12420 | 52.102 | 547 | 241 | 7 | 11 | 537 | 6 | 551 | 0.0 | 544 |
MS.gene52790.t1 | AT1G75790 | 49.534 | 537 | 260 | 3 | 11 | 536 | 8 | 544 | 0.0 | 526 |
MS.gene52790.t1 | AT4G25240 | 50.452 | 553 | 253 | 8 | 1 | 534 | 1 | 551 | 0.0 | 525 |
MS.gene52790.t1 | AT4G25240 | 50.452 | 553 | 253 | 8 | 1 | 534 | 1 | 551 | 0.0 | 525 |
MS.gene52790.t1 | AT5G51480 | 49.813 | 536 | 248 | 9 | 19 | 534 | 17 | 551 | 0.0 | 525 |
MS.gene52790.t1 | AT4G37160 | 54.673 | 428 | 192 | 2 | 22 | 448 | 23 | 449 | 1.51e-165 | 478 |
MS.gene52790.t1 | AT4G39830 | 28.857 | 551 | 325 | 15 | 11 | 506 | 17 | 555 | 2.04e-55 | 196 |
MS.gene52790.t1 | AT2G38080 | 27.339 | 545 | 352 | 13 | 25 | 533 | 22 | 558 | 4.82e-54 | 192 |
MS.gene52790.t1 | AT5G58910 | 28.196 | 571 | 352 | 16 | 11 | 533 | 7 | 567 | 1.80e-52 | 188 |
MS.gene52790.t1 | AT5G21105 | 27.586 | 551 | 326 | 16 | 12 | 507 | 22 | 554 | 1.08e-51 | 186 |
MS.gene52790.t1 | AT5G03260 | 28.470 | 562 | 352 | 18 | 11 | 533 | 7 | 557 | 1.10e-51 | 186 |
MS.gene52790.t1 | AT5G58910 | 29.032 | 527 | 320 | 15 | 51 | 533 | 50 | 566 | 6.07e-51 | 184 |
MS.gene52790.t1 | AT5G21105 | 28.037 | 535 | 312 | 16 | 12 | 491 | 22 | 538 | 2.93e-50 | 181 |
MS.gene52790.t1 | AT5G01190 | 27.580 | 533 | 354 | 12 | 32 | 533 | 27 | 558 | 1.18e-49 | 180 |
MS.gene52790.t1 | AT5G21100 | 26.715 | 554 | 333 | 17 | 34 | 534 | 28 | 561 | 2.51e-49 | 179 |
MS.gene52790.t1 | AT5G01190 | 28.210 | 514 | 337 | 12 | 51 | 533 | 32 | 544 | 4.08e-49 | 178 |
MS.gene52790.t1 | AT5G58910 | 28.463 | 527 | 316 | 16 | 51 | 533 | 14 | 523 | 1.44e-46 | 171 |
MS.gene52790.t1 | AT2G46570 | 25.603 | 539 | 352 | 13 | 30 | 527 | 32 | 562 | 1.86e-41 | 157 |
MS.gene52790.t1 | AT4G39830 | 28.942 | 463 | 263 | 14 | 98 | 506 | 8 | 458 | 4.78e-41 | 155 |
MS.gene52790.t1 | AT4G39830 | 28.942 | 463 | 263 | 14 | 98 | 506 | 10 | 460 | 5.67e-41 | 154 |
MS.gene52790.t1 | AT2G30210 | 27.788 | 529 | 331 | 16 | 10 | 493 | 8 | 530 | 9.46e-41 | 155 |
MS.gene52790.t1 | AT5G05390 | 28.138 | 494 | 314 | 13 | 44 | 499 | 41 | 531 | 7.64e-40 | 152 |
MS.gene52790.t1 | AT5G09360 | 28.719 | 484 | 303 | 13 | 51 | 498 | 57 | 534 | 1.12e-39 | 152 |
MS.gene52790.t1 | AT5G01050 | 25.508 | 541 | 348 | 13 | 41 | 535 | 39 | 570 | 1.15e-38 | 149 |
MS.gene52790.t1 | AT5G01040 | 26.160 | 539 | 345 | 14 | 41 | 535 | 39 | 568 | 7.13e-38 | 147 |
MS.gene52790.t1 | AT2G29130 | 25.501 | 549 | 359 | 17 | 30 | 533 | 30 | 573 | 9.54e-38 | 147 |
MS.gene52790.t1 | AT5G48100 | 27.146 | 501 | 315 | 16 | 51 | 507 | 43 | 537 | 2.47e-37 | 145 |
MS.gene52790.t1 | AT3G09220 | 26.769 | 523 | 338 | 13 | 10 | 493 | 11 | 527 | 3.24e-37 | 145 |
MS.gene52790.t1 | AT4G39830 | 28.078 | 463 | 254 | 14 | 98 | 506 | 10 | 447 | 9.26e-37 | 142 |
MS.gene52790.t1 | AT5G07130 | 28.063 | 506 | 306 | 16 | 51 | 506 | 45 | 542 | 1.32e-36 | 143 |
MS.gene52790.t1 | AT1G18140 | 26.731 | 520 | 314 | 19 | 32 | 493 | 31 | 541 | 2.78e-35 | 140 |
MS.gene52790.t1 | AT2G40370 | 25.174 | 576 | 375 | 15 | 12 | 533 | 7 | 580 | 3.46e-34 | 137 |
MS.gene52790.t1 | AT2G46570 | 25.519 | 482 | 310 | 13 | 87 | 527 | 4 | 477 | 2.32e-33 | 133 |
MS.gene52790.t1 | AT5G21105 | 28.746 | 327 | 194 | 9 | 206 | 507 | 51 | 363 | 1.25e-31 | 126 |
MS.gene52790.t1 | AT3G09220 | 26.107 | 429 | 278 | 11 | 103 | 493 | 3 | 430 | 1.97e-26 | 112 |
MS.gene52790.t1 | AT5G07130 | 27.155 | 464 | 280 | 16 | 93 | 506 | 2 | 457 | 8.41e-26 | 111 |
MS.gene52790.t1 | AT5G07130 | 27.155 | 464 | 280 | 16 | 93 | 506 | 2 | 457 | 8.41e-26 | 111 |
MS.gene52790.t1 | AT5G60020 | 25.784 | 287 | 194 | 7 | 5 | 279 | 6 | 285 | 3.16e-24 | 107 |
MS.gene52790.t1 | AT5G60020 | 25.784 | 287 | 194 | 7 | 5 | 279 | 6 | 285 | 3.33e-24 | 107 |
MS.gene52790.t1 | AT5G60020 | 27.386 | 241 | 162 | 6 | 51 | 279 | 14 | 253 | 1.11e-23 | 105 |
Find 158 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAAAGCAGCTGGCGGTTT+TGG | 0.198928 | 3.1:-91058279 | MS.gene52790:CDS |
CCACAAAGACGTGCATTCTT+TGG | 0.246333 | 3.1:+91052685 | None:intergenic |
GGAGATTACACTGTCCTTAT+TGG | 0.249934 | 3.1:-91058201 | MS.gene52790:CDS |
TTCCAGTTGAAGAATTTATA+TGG | 0.264147 | 3.1:+91060342 | None:intergenic |
GAACAATGTTCTCGTTGTTT+TGG | 0.267342 | 3.1:+91053509 | None:intergenic |
TGTTGAAGACATTGATAATA+AGG | 0.272968 | 3.1:+91060091 | None:intergenic |
GGCTACTCTTTCTTTGTTGT+TGG | 0.288891 | 3.1:-91053469 | MS.gene52790:CDS |
GGAACTTGAGGACCGAGTTT+TGG | 0.289721 | 3.1:-91052786 | MS.gene52790:CDS |
AGCTCTCCTGGTCAGGTTAA+TGG | 0.304843 | 3.1:-91053721 | MS.gene52790:CDS |
TCATTCGAAGATGGTGTTTC+GGG | 0.308208 | 3.1:-91058399 | MS.gene52790:CDS |
CTCATTCGAAGATGGTGTTT+CGG | 0.314795 | 3.1:-91058400 | MS.gene52790:CDS |
AACTCTGCAGGCGCAGTATC+AGG | 0.316792 | 3.1:-91054233 | MS.gene52790:CDS |
GTGTAATCTCCAGCTGGTTC+AGG | 0.327562 | 3.1:+91058213 | None:intergenic |
CTTCAAGTGAAGGATCAAAT+TGG | 0.340873 | 3.1:-91058333 | MS.gene52790:CDS |
TGGTAGGATCCTTGTGGGTT+AGG | 0.342056 | 3.1:+91053784 | None:intergenic |
GTTCAGAGCTATCATCTTGA+TGG | 0.346311 | 3.1:-91053490 | MS.gene52790:CDS |
TAAAGGTATATCCCTATTCA+TGG | 0.349134 | 3.1:-91052846 | MS.gene52790:intron |
TTGATCAATGGGCAATTTCC+TGG | 0.354638 | 3.1:-91060144 | MS.gene52790:CDS |
ATCAATGGTCGTGGACCTAA+TGG | 0.358266 | 3.1:-91054635 | MS.gene52790:CDS |
ATAAATAGCCGTCCATGAAT+AGG | 0.359487 | 3.1:+91052834 | None:intergenic |
ATCCATATAAATTCTTCAAC+TGG | 0.363390 | 3.1:-91060344 | MS.gene52790:CDS |
GCTACTCTTTCTTTGTTGTT+GGG | 0.364251 | 3.1:-91053468 | MS.gene52790:intron |
GCGAGCTTAAGAGGCGTGTC+TGG | 0.366650 | 3.1:+91053658 | None:intergenic |
CACAACAAAGACAATCATTC+TGG | 0.374461 | 3.1:-91053746 | MS.gene52790:CDS |
GATCCTTGTGGGTTAGGCCT+TGG | 0.380517 | 3.1:+91053790 | None:intergenic |
TAGGTCCACGACCATTGATT+AGG | 0.384593 | 3.1:+91054639 | None:intergenic |
ACGTTGAATGATAATCCATT+AGG | 0.386904 | 3.1:+91054620 | None:intergenic |
TAAACCTTTGCTAGCTCAAA+GGG | 0.388940 | 3.1:+91052636 | None:intergenic |
GGGAAAGGGACTGGAATTCT+AGG | 0.390793 | 3.1:+91058234 | None:intergenic |
CCAAAGAATGCACGTCTTTG+TGG | 0.391415 | 3.1:-91052685 | MS.gene52790:CDS |
AAGTTCCTCCCTGGTGGAAT+GGG | 0.392613 | 3.1:+91058366 | None:intergenic |
GTTAATGGCAAGCAAAGATA+TGG | 0.394297 | 3.1:-91053706 | MS.gene52790:CDS |
ACACTGTCCTTATTGGTGAT+TGG | 0.395975 | 3.1:-91058194 | MS.gene52790:CDS |
TACAGGGTATATTGATCAAT+GGG | 0.402058 | 3.1:-91060155 | MS.gene52790:intron |
CGAATGAGTTCCTTCTCTGC+TGG | 0.403249 | 3.1:+91058415 | None:intergenic |
AAGTAATCAGCGAGCTTAAG+AGG | 0.406604 | 3.1:+91053649 | None:intergenic |
AGACGTGCATTCTTTGGAAT+AGG | 0.410783 | 3.1:+91052691 | None:intergenic |
ACTTGTACCAATCACCAATA+AGG | 0.411862 | 3.1:+91058187 | None:intergenic |
ATCATTCTGGCTAGCTCTCC+TGG | 0.412395 | 3.1:-91053733 | MS.gene52790:CDS |
TAAATAGCCGTCCATGAATA+GGG | 0.412871 | 3.1:+91052835 | None:intergenic |
CTTCTACCAACTTCAGTTTG+TGG | 0.415762 | 3.1:+91054426 | None:intergenic |
AATACCTGATTGAGCGGGCT+TGG | 0.429385 | 3.1:+91054165 | None:intergenic |
TCTGGCTAGCTCTCCTGGTC+AGG | 0.435795 | 3.1:-91053728 | MS.gene52790:CDS |
GCCTTGGTCCACTTGCTGTA+AGG | 0.436164 | 3.1:+91053806 | None:intergenic |
TTACAGGGTATATTGATCAA+TGG | 0.440666 | 3.1:-91060156 | MS.gene52790:intron |
TGAACCAAGCCCGCTCAATC+AGG | 0.441372 | 3.1:-91054169 | MS.gene52790:intron |
ATTGAAAGCCCATCTTGATA+AGG | 0.446007 | 3.1:-91054690 | MS.gene52790:CDS |
AACTGCTGATCAACCTTCTC+AGG | 0.451706 | 3.1:-91054327 | MS.gene52790:CDS |
GACCAATCAACTTGGATTGT+AGG | 0.454328 | 3.1:+91054194 | None:intergenic |
TTGAAAGCCCATCTTGATAA+GGG | 0.458638 | 3.1:-91054689 | MS.gene52790:CDS |
TGGACAACTTCTAGCAGAAA+CGG | 0.460958 | 3.1:-91053190 | MS.gene52790:CDS |
CTCCAGCTGGTTCAGGGAAA+GGG | 0.465016 | 3.1:+91058220 | None:intergenic |
ATTAGGACTCCATCAGGTAT+AGG | 0.466437 | 3.1:+91054656 | None:intergenic |
GTCCCTTTCCCTGAACCAGC+TGG | 0.467887 | 3.1:-91058222 | MS.gene52790:CDS |
ACTCTCAATTTAGCTGCTGT+TGG | 0.471199 | 3.1:-91060420 | MS.gene52790:CDS |
GCTTCTTTCCCTTATCAAGA+TGG | 0.472069 | 3.1:+91054681 | None:intergenic |
CTTCTTTCCCTTATCAAGAT+GGG | 0.472616 | 3.1:+91054682 | None:intergenic |
GAAGTTCCTCCCTGGTGGAA+TGG | 0.473761 | 3.1:+91058365 | None:intergenic |
ATTAATACATACCGTATGGT+TGG | 0.474732 | 3.1:+91058164 | None:intergenic |
AAACGCGTAAATAAAATTGT+TGG | 0.475981 | 3.1:+91052746 | None:intergenic |
TTTGTAACAGAATGAATGTC+TGG | 0.477062 | 3.1:+91060120 | None:intergenic |
TACGGTGACATTTACCCACT+TGG | 0.481704 | 3.1:-91060312 | MS.gene52790:CDS |
TGTAATCTCCAGCTGGTTCA+GGG | 0.488077 | 3.1:+91058214 | None:intergenic |
CCACAAGGATCCTACCATTA+CGG | 0.488883 | 3.1:-91053778 | MS.gene52790:CDS |
TTCAACTGGAATGTTACTTA+CGG | 0.490501 | 3.1:-91060330 | MS.gene52790:CDS |
CGTCTTTGTGGTAGGGCAAG+TGG | 0.492438 | 3.1:-91052673 | MS.gene52790:CDS |
TGCTTGCCATTAACCTGACC+AGG | 0.497002 | 3.1:+91053715 | None:intergenic |
TCTCCAGCTGGTTCAGGGAA+AGG | 0.497253 | 3.1:+91058219 | None:intergenic |
CCCACTTGGAGTTCGTCAAA+GGG | 0.500885 | 3.1:-91060298 | MS.gene52790:intron |
GACCTACAATCCAAGTTGAT+TGG | 0.501737 | 3.1:-91054196 | MS.gene52790:CDS |
CAGGAAAGACTTATAGACTT+AGG | 0.506224 | 3.1:-91054496 | MS.gene52790:CDS |
CTCCTCACTTGATGTTCATG+TGG | 0.506285 | 3.1:-91054372 | MS.gene52790:CDS |
GTCTTTGTGGTAGGGCAAGT+GGG | 0.508618 | 3.1:-91052672 | MS.gene52790:CDS |
ACCCACTTGGAGTTCGTCAA+AGG | 0.514899 | 3.1:-91060299 | MS.gene52790:CDS |
CTTCGCTATAGCAACTCTGC+AGG | 0.516465 | 3.1:-91054245 | MS.gene52790:CDS |
TCAAAACCACAAACTGAAGT+TGG | 0.517789 | 3.1:-91054432 | MS.gene52790:CDS |
GCCACCACCAGTGGGTCTCT+CGG | 0.518068 | 3.1:+91053591 | None:intergenic |
GGACAACTTCTAGCAGAAAC+GGG | 0.518926 | 3.1:-91053189 | MS.gene52790:CDS |
TCCGAGAGACCCACTGGTGG+TGG | 0.520583 | 3.1:-91053592 | MS.gene52790:CDS |
AGTGGTGGTGAGAATCTTAG+AGG | 0.523161 | 3.1:+91054274 | None:intergenic |
ACTTGGATTGTAGGTCCACC+AGG | 0.525149 | 3.1:+91054203 | None:intergenic |
ATGAACCCTTTCTCATCTCA+TGG | 0.525350 | 3.1:-91060062 | MS.gene52790:intron |
CAAACTGAAGTTGGTAGAAG+TGG | 0.526063 | 3.1:-91054423 | MS.gene52790:CDS |
AGGACTAACCTTACAGCAAG+TGG | 0.527132 | 3.1:-91053814 | MS.gene52790:CDS |
CCTGATGGAGTCCTAATCAA+TGG | 0.528672 | 3.1:-91054650 | MS.gene52790:CDS |
TCACAGATGTGTCAAGGTAA+AGG | 0.529173 | 3.1:+91053569 | None:intergenic |
GCTGGTTCAGGGAAAGGGAC+TGG | 0.529643 | 3.1:+91058225 | None:intergenic |
CTAGCATTTCAGAAAGCAGC+TGG | 0.529779 | 3.1:-91058288 | MS.gene52790:CDS |
GGTTCAAAGACCAATCAACT+TGG | 0.532843 | 3.1:+91054186 | None:intergenic |
CTTGTACCATGAGATGAGAA+AGG | 0.533419 | 3.1:+91060056 | None:intergenic |
GCTGATTACTTCAAAATCTC+CGG | 0.535779 | 3.1:-91053637 | MS.gene52790:CDS |
CGAGCTTAAGAGGCGTGTCT+GGG | 0.536643 | 3.1:+91053659 | None:intergenic |
ATTTCAATGTGTAGTATGGA+TGG | 0.541372 | 3.1:-91053220 | MS.gene52790:intron |
AGAATGCACGTCTTTGTGGT+AGG | 0.541610 | 3.1:-91052681 | MS.gene52790:CDS |
AAGAAGCTTCCTATACCTGA+TGG | 0.542552 | 3.1:-91054665 | MS.gene52790:CDS |
AAGGTAAAGGCCACCACCAG+TGG | 0.545521 | 3.1:+91053582 | None:intergenic |
AGGAAACTCGTCTCTGATTG+AGG | 0.545951 | 3.1:+91052711 | None:intergenic |
CCATTGATTAGGACTCCATC+AGG | 0.546662 | 3.1:+91054650 | None:intergenic |
ACAACATGCCCCATTCCACC+AGG | 0.552266 | 3.1:-91058375 | MS.gene52790:CDS |
GGAATGGGATCCAGCAGAGA+AGG | 0.552434 | 3.1:-91058425 | MS.gene52790:CDS |
AGCATATCCGAGAGACCCAC+TGG | 0.553204 | 3.1:-91053598 | MS.gene52790:CDS |
AGAAGGAACTCATTCGAAGA+TGG | 0.555890 | 3.1:-91058408 | MS.gene52790:CDS |
CGTAATGGTAGGATCCTTGT+GGG | 0.556156 | 3.1:+91053779 | None:intergenic |
GCTTTCTGAAATGCTAGAGA+TGG | 0.570090 | 3.1:+91058294 | None:intergenic |
TTGTACCATGAGATGAGAAA+GGG | 0.571758 | 3.1:+91060057 | None:intergenic |
GAATGCACGTCTTTGTGGTA+GGG | 0.578512 | 3.1:-91052680 | MS.gene52790:CDS |
CACTTGACAACGTTGGAATG+TGG | 0.580641 | 3.1:-91052807 | MS.gene52790:CDS |
CACTTATATACTTCAAGTGA+AGG | 0.581224 | 3.1:-91058343 | MS.gene52790:CDS |
TATGTTGCACTTGACAACGT+TGG | 0.582455 | 3.1:-91052814 | MS.gene52790:CDS |
GGAGTCCTAATCAATGGTCG+TGG | 0.582546 | 3.1:-91054644 | MS.gene52790:CDS |
AGTTCCTCCCTGGTGGAATG+GGG | 0.583323 | 3.1:+91058367 | None:intergenic |
ATACTGTCGTGCCCAAAACT+CGG | 0.586339 | 3.1:+91052774 | None:intergenic |
TTATCATTCAACGTTGAACA+AGG | 0.591618 | 3.1:-91054611 | MS.gene52790:intron |
AATCTTAGAGGAGAATCTTG+TGG | 0.591739 | 3.1:+91054286 | None:intergenic |
AGGACAGTGTAATCTCCAGC+TGG | 0.591788 | 3.1:+91058207 | None:intergenic |
GATCTTCAGCTGAAGTAATG+TGG | 0.599045 | 3.1:+91060364 | None:intergenic |
ACCCTTTGACGAACTCCAAG+TGG | 0.599197 | 3.1:+91060297 | None:intergenic |
AACCTTTGCTAGCTCAAAGG+GGG | 0.603610 | 3.1:+91052638 | None:intergenic |
AGTAGCAACACATAGAAGCA+AGG | 0.603929 | 3.1:+91060395 | None:intergenic |
TTGTGTTTATGAGACCGTAA+TGG | 0.605518 | 3.1:+91053764 | None:intergenic |
ACAGAATGAATGTCTGGACC+AGG | 0.605888 | 3.1:+91060126 | None:intergenic |
AGTAGCACGTTGCACCACTC+AGG | 0.606940 | 3.1:-91053149 | MS.gene52790:intron |
CTGAAGTTGGTAGAAGTGGA+AGG | 0.607607 | 3.1:-91054419 | MS.gene52790:CDS |
AGTGAAATACCTGATTGAGC+GGG | 0.607815 | 3.1:+91054160 | None:intergenic |
ATATAAGTGAAGTTCCTCCC+TGG | 0.613485 | 3.1:+91058357 | None:intergenic |
CCGTAATGGTAGGATCCTTG+TGG | 0.613529 | 3.1:+91053778 | None:intergenic |
AAGTGAAATACCTGATTGAG+CGG | 0.617943 | 3.1:+91054159 | None:intergenic |
ACGTTGGAATGTGGAACTTG+AGG | 0.618713 | 3.1:-91052798 | MS.gene52790:CDS |
ATAGCGAAGCACCGCAGTGG+TGG | 0.618940 | 3.1:+91054259 | None:intergenic |
ACAATGTAGTAGTCCTGAGA+AGG | 0.622508 | 3.1:+91054314 | None:intergenic |
GTTTATGAGACCGTAATGGT+AGG | 0.623341 | 3.1:+91053768 | None:intergenic |
TTGGTACAAGTCCAACCATA+CGG | 0.625373 | 3.1:-91058175 | MS.gene52790:intron |
TCCTCACTTGATGTTCATGT+GGG | 0.629604 | 3.1:-91054371 | MS.gene52790:CDS |
CTTGGATTGTAGGTCCACCA+GGG | 0.631318 | 3.1:+91054204 | None:intergenic |
CTTGCATCACAGATGTGTCA+AGG | 0.635259 | 3.1:+91053563 | None:intergenic |
GGTATATCCCTATTCATGGA+CGG | 0.635653 | 3.1:-91052842 | MS.gene52790:CDS |
ACCTTACAGCAAGTGGACCA+AGG | 0.643171 | 3.1:-91053807 | MS.gene52790:CDS |
TAAGTGAAGTTCCTCCCTGG+TGG | 0.643774 | 3.1:+91058360 | None:intergenic |
AACATCAAGTGAGGAGTACG+TGG | 0.656057 | 3.1:+91054379 | None:intergenic |
AGGTAAAGGCCACCACCAGT+GGG | 0.656498 | 3.1:+91053583 | None:intergenic |
GGACCAAGGCCTAACCCACA+AGG | 0.659246 | 3.1:-91053793 | MS.gene52790:CDS |
CCCTTTGACGAACTCCAAGT+GGG | 0.661178 | 3.1:+91060298 | None:intergenic |
TCAATGTGTAGTATGGATGG+AGG | 0.663408 | 3.1:-91053217 | MS.gene52790:intron |
GCATTTCAGAAAGCAGCTGG+CGG | 0.666254 | 3.1:-91058285 | MS.gene52790:CDS |
TTCTCAGGACTACTACATTG+TGG | 0.670612 | 3.1:-91054312 | MS.gene52790:CDS |
TAGACTTAGGATATCAAACG+TGG | 0.675596 | 3.1:-91054483 | MS.gene52790:CDS |
TCCCACATGAACATCAAGTG+AGG | 0.677217 | 3.1:+91054370 | None:intergenic |
TAATATGATTCTCACCTGAG+TGG | 0.682067 | 3.1:+91053135 | None:intergenic |
TTGGATTGTAGGTCCACCAG+GGG | 0.683406 | 3.1:+91054205 | None:intergenic |
AAACCTTTGCTAGCTCAAAG+GGG | 0.688074 | 3.1:+91052637 | None:intergenic |
GCTATAGCGAAGCACCGCAG+TGG | 0.699087 | 3.1:+91054256 | None:intergenic |
AGACTTAGGATATCAAACGT+GGG | 0.700576 | 3.1:-91054482 | MS.gene52790:CDS |
CAACATGCCCCATTCCACCA+GGG | 0.718024 | 3.1:-91058374 | MS.gene52790:CDS |
ATATCCGAGAGACCCACTGG+TGG | 0.742368 | 3.1:-91053595 | MS.gene52790:CDS |
GTAGTATGGATGGAGGACAG+TGG | 0.742907 | 3.1:-91053210 | MS.gene52790:intron |
TGGATTGTAGGTCCACCAGG+GGG | 0.761885 | 3.1:+91054206 | None:intergenic |
CATGCCCCATTCCACCAGGG+AGG | 0.762341 | 3.1:-91058371 | MS.gene52790:CDS |
TAAGATTCTCACCACCACTG+CGG | 0.773633 | 3.1:-91054270 | MS.gene52790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 91052651 | 91060445 | 91052651 | ID=MS.gene52790 |
chr3.1 | mRNA | 91052651 | 91060445 | 91052651 | ID=MS.gene52790.t1;Parent=MS.gene52790 |
chr3.1 | exon | 91060299 | 91060445 | 91060299 | ID=MS.gene52790.t1.exon1;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91060299 | 91060445 | 91060299 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91060063 | 91060172 | 91060063 | ID=MS.gene52790.t1.exon2;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91060063 | 91060172 | 91060063 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91058176 | 91058446 | 91058176 | ID=MS.gene52790.t1.exon3;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91058176 | 91058446 | 91058176 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91054612 | 91054714 | 91054612 | ID=MS.gene52790.t1.exon4;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91054612 | 91054714 | 91054612 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91054170 | 91054515 | 91054170 | ID=MS.gene52790.t1.exon5;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91054170 | 91054515 | 91054170 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91053469 | 91053834 | 91053469 | ID=MS.gene52790.t1.exon6;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91053469 | 91053834 | 91053469 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91053150 | 91053228 | 91053150 | ID=MS.gene52790.t1.exon7;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91053150 | 91053228 | 91053150 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
chr3.1 | exon | 91052651 | 91052863 | 91052651 | ID=MS.gene52790.t1.exon8;Parent=MS.gene52790.t1 |
chr3.1 | CDS | 91052651 | 91052863 | 91052651 | ID=cds.MS.gene52790.t1;Parent=MS.gene52790.t1 |
Gene Sequence |
Protein sequence |