AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52949

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52949.t1 MTR_1g076130 99.699 332 1 0 1 332 1 332 0.0 681
MS.gene52949.t1 MTR_1g043040 93.675 332 21 0 1 332 1 332 0.0 623
MS.gene52949.t1 MTR_8g005980 84.498 329 51 0 3 331 85 413 0.0 559
MS.gene52949.t1 MTR_1g090730 39.818 329 191 4 3 328 92 416 5.91e-74 234
MS.gene52949.t1 MTR_1g090730 41.852 270 153 1 3 272 92 357 1.85e-62 204
MS.gene52949.t1 MTR_7g037650 73.913 46 12 0 15 60 24 69 7.01e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52949.t1 AT1G04410 90.060 332 33 0 1 332 1 332 0.0 605
MS.gene52949.t1 AT5G43330 89.458 332 35 0 1 332 1 332 0.0 597
MS.gene52949.t1 AT5G56720 72.590 332 91 0 1 332 40 371 0.0 510
MS.gene52949.t1 AT5G58330 41.641 329 185 4 3 328 96 420 5.21e-79 248
MS.gene52949.t1 AT5G58330 41.641 329 185 4 3 328 97 421 5.83e-79 248
MS.gene52949.t1 AT5G58330 41.587 315 177 4 17 328 2 312 5.01e-76 237

Find 92 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCATTCCCTCTTCTTAA+AGG 0.234412 1.1:+56894964 MS.gene52949:CDS
TGGAGGATCACGGGCTGGTC+AGG 0.252087 1.1:-56894880 None:intergenic
ATCACTGAACGGTGTTAAAA+TGG 0.283888 1.1:+56894930 MS.gene52949:CDS
TGACAAGATTGGACCATAAC+AGG 0.286946 1.1:+56896067 MS.gene52949:CDS
CACATTAGAGATTGGGTTCT+AGG 0.308508 1.1:+56896476 MS.gene52949:CDS
CATTTCTTGTTTGACAAGAT+TGG 0.308718 1.1:+56896056 MS.gene52949:CDS
ATCAAGGCATTGGTGTTTGC+CGG 0.326996 1.1:-56895997 None:intergenic
TGCAATATCATCAGGGAACC+TGG 0.363492 1.1:+56896590 MS.gene52949:intron
TGGAGTCAATATTGCTGTTA+TGG 0.370670 1.1:+56895156 MS.gene52949:CDS
CTCTTGTCCCTATGATTGCC+AGG 0.371373 1.1:+56894842 MS.gene52949:CDS
ACAGTTGCGTGGTTGACATC+AGG 0.383245 1.1:-56896180 None:intergenic
TGATTGCAGCACCCCGTTGT+TGG 0.384508 1.1:-56896400 None:intergenic
TTTGACCCAGAGCCCTGTTA+TGG 0.392891 1.1:-56896080 None:intergenic
ATCACTCCCCTGGCAATCAT+AGG 0.399565 1.1:-56894850 None:intergenic
GCTTTCTGAGGAGAAGGCTT+TGG 0.399799 1.1:+56896951 MS.gene52949:CDS
CTTGTGACCACATTAGAGAT+TGG 0.400822 1.1:+56896468 MS.gene52949:CDS
CATAGCTACCGTCCAACAAC+GGG 0.401578 1.1:+56896388 MS.gene52949:CDS
CACCAATGCCTTGATCTTGA+AGG 0.415103 1.1:+56896005 MS.gene52949:CDS
TTTAACACCGTTCAGTGATT+CGG 0.419237 1.1:-56894926 None:intergenic
GGCATTGGTGTTTGCCGGGT+TGG 0.424208 1.1:-56895992 None:intergenic
CCTGTTCGTGTTCTTGTCAC+TGG 0.433814 1.1:+56894129 MS.gene52949:CDS
CCAGTGACAAGAACACGAAC+AGG 0.438629 1.1:-56894129 None:intergenic
TTGTGACCACATTAGAGATT+GGG 0.444343 1.1:+56896469 MS.gene52949:CDS
CCGTTCAGTGATTCGGCTGC+TGG 0.450461 1.1:-56894919 None:intergenic
TCGCCATTGCGAGTTGTGAC+AGG 0.451805 1.1:-56896676 None:intergenic
TTTCTCAAGAGCAGAAGCTT+GGG 0.453532 1.1:-56895251 None:intergenic
GTTTCTCAAGAGCAGAAGCT+TGG 0.456679 1.1:-56895252 None:intergenic
ATTGGACCATAACAGGGCTC+TGG 0.463189 1.1:+56896074 MS.gene52949:CDS
TTCAGTGATTCGGCTGCTGG+TGG 0.473142 1.1:-56894916 None:intergenic
AATATTGCTGTTATGGTTGG+TGG 0.480289 1.1:+56895163 MS.gene52949:CDS
GTCAATATTGCTGTTATGGT+TGG 0.483183 1.1:+56895160 MS.gene52949:CDS
GGAGGATCACGGGCTGGTCA+GGG 0.487190 1.1:-56894879 None:intergenic
AACTCGTGGCTGATGATGCC+TGG 0.490237 1.1:+56896235 MS.gene52949:CDS
GTTCTTGTCACTGGTGCTGC+AGG 0.494198 1.1:+56894138 MS.gene52949:CDS
GGCGAATGGCAAATAGTTCA+AGG 0.495465 1.1:+56896694 MS.gene52949:CDS
TTCCTTCAAGATCAAGGCAT+TGG 0.495936 1.1:-56896007 None:intergenic
TGCTACAACTGATGTGGTTG+AGG 0.500221 1.1:+56895126 MS.gene52949:CDS
AGGGCCGAGCATCACTCCCC+TGG 0.504498 1.1:-56894860 None:intergenic
AGAAGAGCTTTCTGAGGAGA+AGG 0.511032 1.1:+56896945 MS.gene52949:CDS
TCAAGGCATTGGTGTTTGCC+GGG 0.513479 1.1:-56895996 None:intergenic
AGCGAATTCCTTCAAGATCA+AGG 0.519920 1.1:-56896013 None:intergenic
GGTCCTCGTTGTTGCCAACC+CGG 0.524157 1.1:+56895978 MS.gene52949:intron
TCAGGGAACCTGGGTATCGA+TGG 0.524300 1.1:+56896600 MS.gene52949:intron
GGTGGATTCCCTAGAAAAGA+AGG 0.528773 1.1:+56895181 MS.gene52949:CDS
CGGTGTTAAAATGGAGTTGG+TGG 0.529018 1.1:+56894939 MS.gene52949:CDS
TCAAGCATGTGGAGGATCAC+GGG 0.532929 1.1:-56894889 None:intergenic
CGCCATTGCGAGTTGTGACA+GGG 0.533982 1.1:-56896675 None:intergenic
ATTCCCTAGAAAAGAAGGTA+TGG 0.539427 1.1:+56895186 MS.gene52949:CDS
TCGATGGGAGTTTATTCTGA+TGG 0.539461 1.1:+56896616 MS.gene52949:CDS
GTCAAGCATGTGGAGGATCA+CGG 0.540541 1.1:-56894890 None:intergenic
CAGTTGCGTGGTTGACATCA+GGG 0.549966 1.1:-56896179 None:intergenic
AACTCAAACCTTTAAGAAGA+GGG 0.552886 1.1:-56894972 None:intergenic
TCACTCCCCTGGCAATCATA+GGG 0.553376 1.1:-56894849 None:intergenic
TTGGACCATAACAGGGCTCT+GGG 0.556375 1.1:+56896075 MS.gene52949:CDS
TGCAGCACCCCGTTGTTGGA+CGG 0.557691 1.1:-56896396 None:intergenic
GGATCTTACAATGTACCCGC+TGG 0.562224 1.1:+56896637 MS.gene52949:CDS
GACAGCAGAAGAGCTTTCTG+AGG 0.563983 1.1:+56896939 MS.gene52949:CDS
TCACAACTCGCAATGGCGAA+TGG 0.564475 1.1:+56896680 MS.gene52949:CDS
TTCCCTGTCACAACTCGCAA+TGG 0.566100 1.1:+56896673 MS.gene52949:CDS
GTGGTCACAAGCAGCGCTCG+CGG 0.568937 1.1:-56896456 None:intergenic
ATTGCCAGGGGAGTGATGCT+CGG 0.570606 1.1:+56894856 MS.gene52949:CDS
CATCATCAGCCACGAGTTCA+CGG 0.570980 1.1:-56896230 None:intergenic
AAACTCAAACCTTTAAGAAG+AGG 0.571371 1.1:-56894973 None:intergenic
TCTTGTCCCTATGATTGCCA+GGG 0.574263 1.1:+56894843 MS.gene52949:CDS
GCATGTGGAGGATCACGGGC+TGG 0.580601 1.1:-56894885 None:intergenic
TCAGTGATTCGGCTGCTGGT+GGG 0.585206 1.1:-56894915 None:intergenic
GATGTGGTTGAGGGATGCAC+TGG 0.588132 1.1:+56895136 MS.gene52949:CDS
CAGGGAACCTGGGTATCGAT+GGG 0.588520 1.1:+56896601 MS.gene52949:intron
AATGAATAGATTAGTCCAGC+GGG 0.591914 1.1:-56896652 None:intergenic
GCTACAACTGATGTGGTTGA+GGG 0.594490 1.1:+56895127 MS.gene52949:CDS
GACAAGATTGGACCATAACA+GGG 0.599626 1.1:+56896068 MS.gene52949:CDS
ATAAACTCCCATCGATACCC+AGG 0.604419 1.1:-56896608 None:intergenic
CTGGTGGGATGTCAAGCATG+TGG 0.608538 1.1:-56894900 None:intergenic
CAGGGTACTGACTTGATGAA+TGG 0.610269 1.1:-56896161 None:intergenic
CTAGAACCCAATCTCTAATG+TGG 0.612432 1.1:-56896475 None:intergenic
TCATAGCTACCGTCCAACAA+CGG 0.613333 1.1:+56896387 MS.gene52949:CDS
TGTTGTTGCTACAACTGATG+TGG 0.615089 1.1:+56895120 MS.gene52949:CDS
TCAGCCACGAGTTCACGGAC+AGG 0.623183 1.1:-56896225 None:intergenic
ACATGCTGCTGCAAACTGCA+AGG 0.624025 1.1:+56895273 MS.gene52949:CDS
GCAATATCATCAGGGAACCT+GGG 0.624982 1.1:+56896591 MS.gene52949:intron
GAACGGTGTTAAAATGGAGT+TGG 0.636523 1.1:+56894936 MS.gene52949:CDS
AAAGCCTGTCCGTGAACTCG+TGG 0.642217 1.1:+56896221 MS.gene52949:CDS
TTGGGTTCTAGGAACTCCTG+AGG 0.644314 1.1:+56896487 MS.gene52949:CDS
GGAAACAAGCTGTCTAAGAG+AGG 0.644922 1.1:-56896984 None:intergenic
CTTGTCCCTATGATTGCCAG+GGG 0.651791 1.1:+56894844 MS.gene52949:CDS
CCAGCAGCCGAATCACTGAA+CGG 0.657663 1.1:+56894919 MS.gene52949:CDS
CTAGAAAAGAAGGTATGGAG+AGG 0.663254 1.1:+56895191 MS.gene52949:CDS
GAATGAATAGATTAGTCCAG+CGG 0.674762 1.1:-56896653 None:intergenic
GTGGGATGTCAAGCATGTGG+AGG 0.682561 1.1:-56894897 None:intergenic
CAGTGACAAGAACACGAACA+GGG 0.694789 1.1:-56894128 None:intergenic
TTGCCGGGTTGGCAACAACG+AGG 0.707642 1.1:-56895981 None:intergenic
ATAGCTACCGTCCAACAACG+GGG 0.807747 1.1:+56896389 MS.gene52949:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATTGCATAATTATAA+GGG - chr1.1:56894463-56894482 None:intergenic 15.0%
!! ATGTGAAAAATGTTATAATT+TGG + chr1.1:56896133-56896152 MS.gene52949:CDS 15.0%
!! CTTAATTTACAAATAAAAGA+CGG - chr1.1:56896797-56896816 None:intergenic 15.0%
!! TGTGAAAAATGTTATAATTT+GGG + chr1.1:56896134-56896153 MS.gene52949:CDS 15.0%
!! TTCAAATTCTTTATATTGAA+TGG + chr1.1:56896536-56896555 MS.gene52949:intron 15.0%
!!! ATTTTTTTTGACATAAAATG+CGG - chr1.1:56895359-56895378 None:intergenic 15.0%
!!! TTGTTTTATATAGCAAATAA+AGG + chr1.1:56896823-56896842 MS.gene52949:intron 15.0%
!! AAAAAATATGTTCCATTCTA+TGG + chr1.1:56895372-56895391 MS.gene52949:intron 20.0%
!! ACAACTTAATTAAATTCGTA+CGG - chr1.1:56895661-56895680 None:intergenic 20.0%
!! ATTTCAACATAAAATCTTTG+AGG + chr1.1:56894763-56894782 MS.gene52949:intron 20.0%
!! ATTTCTATAAACTCTCAAAT+AGG - chr1.1:56894514-56894533 None:intergenic 20.0%
!! CAGAAAATTGCATAATTATA+AGG - chr1.1:56894464-56894483 None:intergenic 20.0%
!! GTGAAAAATGTTATAATTTG+GGG + chr1.1:56896135-56896154 MS.gene52949:CDS 20.0%
!! GTTTCCAAAAATATGTAAAA+AGG - chr1.1:56895902-56895921 None:intergenic 20.0%
!! TTGTGAAAATTATTTGTTTC+AGG + chr1.1:56895097-56895116 MS.gene52949:intron 20.0%
!! TTTAGAAATAGAACTATGTT+TGG + chr1.1:56894291-56894310 MS.gene52949:intron 20.0%
!! TTTCTATAAACTCTCAAATA+GGG - chr1.1:56894513-56894532 None:intergenic 20.0%
!!! AAAAATGTTTTGCCAATTTT+AGG + chr1.1:56894805-56894824 MS.gene52949:intron 20.0%
!!! AGATTTTGATAAATTATTGC+TGG + chr1.1:56896719-56896738 MS.gene52949:intron 20.0%
!!! CGTCTTTTATTTGTAAATTA+AGG + chr1.1:56896795-56896814 MS.gene52949:intron 20.0%
!!! GTAAACATTTTAACCATATT+TGG - chr1.1:56894729-56894748 None:intergenic 20.0%
!!! TACGAATTTAATTAAGTTGT+TGG + chr1.1:56895661-56895680 MS.gene52949:intron 20.0%
!!! TAGTCCTTTTTACATATTTT+TGG + chr1.1:56895895-56895914 MS.gene52949:intron 20.0%
!!! TATGTCTTTTGTTTTGTTTA+AGG + chr1.1:56894194-56894213 MS.gene52949:intron 20.0%
! AAATGCTTTGCAAGATTAAA+AGG + chr1.1:56895072-56895091 MS.gene52949:intron 25.0%
! AACTAAAATAAATTCAGTGC+AGG - chr1.1:56895760-56895779 None:intergenic 25.0%
! ACAGAGTTTAAAGAAATGTA+AGG - chr1.1:56895947-56895966 None:intergenic 25.0%
! AGGTAACCATAATAAATTCT+GGG + chr1.1:56894158-56894177 MS.gene52949:intron 25.0%
! ATACTTCAGTAAATGCAAAA+TGG - chr1.1:56896331-56896350 None:intergenic 25.0%
! GAAAAGATAAACATAAACCT+TGG - chr1.1:56896568-56896587 None:intergenic 25.0%
! TATCCAATTTGTCCTAAAAT+TGG - chr1.1:56894820-56894839 None:intergenic 25.0%
! TGAAAGAGATACATGAAAAA+GGG - chr1.1:56895408-56895427 None:intergenic 25.0%
! TGAAGTTGTTTATCCAAATA+TGG + chr1.1:56894713-56894732 MS.gene52949:intron 25.0%
! TTTATTTCCATAATCTCTCT+AGG + chr1.1:56894565-56894584 MS.gene52949:intron 25.0%
!! AAACAAGAAATGTTTTTCTC+AGG - chr1.1:56896048-56896067 None:intergenic 25.0%
!! TAAATGTTACTTGAACTTCT+TGG + chr1.1:56895006-56895025 MS.gene52949:intron 25.0%
!! TATCAATTGATGAGTTTTCA+AGG + chr1.1:56896902-56896921 MS.gene52949:CDS 25.0%
!! TTTTCATTGCAATATCATCA+GGG + chr1.1:56896583-56896602 MS.gene52949:intron 25.0%
!!! ATCTGTCTAATTTTTTAACC+AGG + chr1.1:56896877-56896896 MS.gene52949:intron 25.0%
!!! ATGTGTATTTTGGTCATATA+TGG + chr1.1:56895814-56895833 MS.gene52949:intron 25.0%
!!! TGAGTTTTCAAGGAAAAAAT+TGG + chr1.1:56896912-56896931 MS.gene52949:CDS 25.0%
AAAGAGATACATGAAAAAGG+GGG - chr1.1:56895406-56895425 None:intergenic 30.0%
AAGTTATCCTAGAGAGATTA+TGG - chr1.1:56894575-56894594 None:intergenic 30.0%
CAATCAAGAAACATGATACA+AGG - chr1.1:56894265-56894284 None:intergenic 30.0%
CAGGTAACCATAATAAATTC+TGG + chr1.1:56894157-56894176 MS.gene52949:intron 30.0%
CTGAAAGAGATACATGAAAA+AGG - chr1.1:56895409-56895428 None:intergenic 30.0%
CTTGTATCATGTTTCTTGAT+TGG + chr1.1:56894263-56894282 MS.gene52949:intron 30.0%
GAAAGAGATACATGAAAAAG+GGG - chr1.1:56895407-56895426 None:intergenic 30.0%
GAGAAACCCAGAATTTATTA+TGG - chr1.1:56894167-56894186 None:intergenic 30.0%
TAGGGAAAATACTACAATTG+AGG - chr1.1:56894495-56894514 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr1.1:56895433-56895452 None:intergenic 30.0%
! AAACTCAAACCTTTAAGAAG+AGG - chr1.1:56894976-56894995 None:intergenic 30.0%
! AACTCAAACCTTTAAGAAGA+GGG - chr1.1:56894975-56894994 None:intergenic 30.0%
! AGAAATGTTTTTCTCAGGAA+TGG - chr1.1:56896043-56896062 None:intergenic 30.0%
! CATTTCTTGTTTGACAAGAT+TGG + chr1.1:56896056-56896075 MS.gene52949:CDS 30.0%
! CTTTTCATTGCAATATCATC+AGG + chr1.1:56896582-56896601 MS.gene52949:intron 30.0%
! TGATGTAATTTTCATCGTCA+AGG + chr1.1:56896351-56896370 MS.gene52949:intron 30.0%
! TTAGTTTAGTGCTGAAAAAG+TGG + chr1.1:56895774-56895793 MS.gene52949:intron 30.0%
! TTGTCATAGTTTTTGTGTGA+TGG + chr1.1:56895709-56895728 MS.gene52949:intron 30.0%
! TTTTCATCGTCAAGGTTAAA+TGG + chr1.1:56896359-56896378 MS.gene52949:intron 30.0%
!!! TTGCCAATTTTAGGACAAAT+TGG + chr1.1:56894814-56894833 MS.gene52949:intron 30.0%
AGAAACAGATTTCACCAGAA+TGG - chr1.1:56895856-56895875 None:intergenic 35.0%
ATATTGAATGGCTTCAACCA+AGG + chr1.1:56896548-56896567 MS.gene52949:intron 35.0%
ATTAACTGCTTGCAACTACT+AGG - chr1.1:56894389-56894408 None:intergenic 35.0%
ATTCAGTGCAGGTAATGTAT+TGG - chr1.1:56895749-56895768 None:intergenic 35.0%
ATTCCCTAGAAAAGAAGGTA+TGG + chr1.1:56895186-56895205 MS.gene52949:CDS 35.0%
CCAACTTCAAACCAGAAATA+TGG - chr1.1:56895036-56895055 None:intergenic 35.0%
CTTATTTCCATAAGCTCTAC+AGG + chr1.1:56895542-56895561 MS.gene52949:intron 35.0%
GCTTGAGCATTCAGAATTAA+AGG - chr1.1:56895303-56895322 None:intergenic 35.0%
TATTTGTCCATCAACATACC+AGG - chr1.1:56896256-56896275 None:intergenic 35.0%
TTGTGACCACATTAGAGATT+GGG + chr1.1:56896469-56896488 MS.gene52949:CDS 35.0%
TTTAACACCGTTCAGTGATT+CGG - chr1.1:56894929-56894948 None:intergenic 35.0%
! AACTCATCAATTGATAGTCC+TGG - chr1.1:56896898-56896917 None:intergenic 35.0%
! AATATTGCTGTTATGGTTGG+TGG + chr1.1:56895163-56895182 MS.gene52949:CDS 35.0%
! AATGAATAGATTAGTCCAGC+GGG - chr1.1:56896655-56896674 None:intergenic 35.0%
! ATCACTGAACGGTGTTAAAA+TGG + chr1.1:56894930-56894949 MS.gene52949:CDS 35.0%
! ATGTTTTTCTCAGGAATGGA+TGG - chr1.1:56896039-56896058 None:intergenic 35.0%
! GAATGAATAGATTAGTCCAG+CGG - chr1.1:56896656-56896675 None:intergenic 35.0%
! GTCAATATTGCTGTTATGGT+TGG + chr1.1:56895160-56895179 MS.gene52949:CDS 35.0%
! TCTCCATACCTTCTTTTCTA+GGG - chr1.1:56895192-56895211 None:intergenic 35.0%
! TGGAGTCAATATTGCTGTTA+TGG + chr1.1:56895156-56895175 MS.gene52949:CDS 35.0%
!! AAGCAATTTTAACAGTTGCG+TGG - chr1.1:56896194-56896213 None:intergenic 35.0%
!! CCATATTTCTGGTTTGAAGT+TGG + chr1.1:56895033-56895052 MS.gene52949:intron 35.0%
!! TGGTTGGTTCATGTGTATTT+TGG + chr1.1:56895804-56895823 MS.gene52949:intron 35.0%
AAAAAGTGGTTCCATCTGGT+TGG + chr1.1:56895788-56895807 MS.gene52949:intron 40.0%
AAGCTATCCTGTAGAGCTTA+TGG - chr1.1:56895552-56895571 None:intergenic 40.0%
AAGTCCTTGTGATTCCATTC+TGG + chr1.1:56895839-56895858 MS.gene52949:intron 40.0%
AGCGAATTCCTTCAAGATCA+AGG - chr1.1:56896016-56896035 None:intergenic 40.0%
ATACACATGAACCAACCAGA+TGG - chr1.1:56895802-56895821 None:intergenic 40.0%
CACATTAGAGATTGGGTTCT+AGG + chr1.1:56896476-56896495 MS.gene52949:CDS 40.0%
CTAGAACCCAATCTCTAATG+TGG - chr1.1:56896478-56896497 None:intergenic 40.0%
CTTGTGACCACATTAGAGAT+TGG + chr1.1:56896468-56896487 MS.gene52949:CDS 40.0%
GACAAGATTGGACCATAACA+GGG + chr1.1:56896068-56896087 MS.gene52949:CDS 40.0%
GTATCTCTTTCAGACCTGTT+TGG + chr1.1:56895416-56895435 MS.gene52949:intron 40.0%
TAAACTCTGTATCACCATGC+AGG + chr1.1:56895957-56895976 MS.gene52949:intron 40.0%
TCGATGGGAGTTTATTCTGA+TGG + chr1.1:56896616-56896635 MS.gene52949:CDS 40.0%
TGACAAGATTGGACCATAAC+AGG + chr1.1:56896067-56896086 MS.gene52949:CDS 40.0%
TGTTGTTGCTACAACTGATG+TGG + chr1.1:56895120-56895139 MS.gene52949:CDS 40.0%
TTCACCAGAATGGAATCACA+AGG - chr1.1:56895846-56895865 None:intergenic 40.0%
TTCCTTCAAGATCAAGGCAT+TGG - chr1.1:56896010-56896029 None:intergenic 40.0%
TTCTTGGACTGCCATATTTC+TGG + chr1.1:56895022-56895041 MS.gene52949:intron 40.0%
TTTCTCAAGAGCAGAAGCTT+GGG - chr1.1:56895254-56895273 None:intergenic 40.0%
! CTAGAAAAGAAGGTATGGAG+AGG + chr1.1:56895191-56895210 MS.gene52949:CDS 40.0%
! CTCTCCATACCTTCTTTTCT+AGG - chr1.1:56895193-56895212 None:intergenic 40.0%
! GAACGGTGTTAAAATGGAGT+TGG + chr1.1:56894936-56894955 MS.gene52949:CDS 40.0%
! GGTTTGAAGTTGGATTGTGT+TGG + chr1.1:56895043-56895062 MS.gene52949:intron 40.0%
AAGCACTTGTGAGACTGCTT+GGG + chr1.1:56895473-56895492 MS.gene52949:intron 45.0%
AGCAAGACATAACCAACCTC+AGG - chr1.1:56896506-56896525 None:intergenic 45.0%
ATAAACTCCCATCGATACCC+AGG - chr1.1:56896611-56896630 None:intergenic 45.0%
ATACATGAAAAAGGGGGAGG+AGG - chr1.1:56895400-56895419 None:intergenic 45.0%
CACCAATGCCTTGATCTTGA+AGG + chr1.1:56896005-56896024 MS.gene52949:CDS 45.0%
CAGTGACAAGAACACGAACA+GGG - chr1.1:56894131-56894150 None:intergenic 45.0%
GAGATACATGAAAAAGGGGG+AGG - chr1.1:56895403-56895422 None:intergenic 45.0%
GATGATGCCTGGTATGTTGA+TGG + chr1.1:56896246-56896265 MS.gene52949:intron 45.0%
GCAATATCATCAGGGAACCT+GGG + chr1.1:56896591-56896610 MS.gene52949:intron 45.0%
GCTACAACTGATGTGGTTGA+GGG + chr1.1:56895127-56895146 MS.gene52949:CDS 45.0%
GCTGAAAAAGTGGTTCCATC+TGG + chr1.1:56895784-56895803 MS.gene52949:intron 45.0%
GCTGCATTCCCTCTTCTTAA+AGG + chr1.1:56894964-56894983 MS.gene52949:CDS 45.0%
GGCGAATGGCAAATAGTTCA+AGG + chr1.1:56896694-56896713 MS.gene52949:CDS 45.0%
GTCTCACAAGTGCTTGCTTA+TGG - chr1.1:56895468-56895487 None:intergenic 45.0%
GTTTCTCAAGAGCAGAAGCT+TGG - chr1.1:56895255-56895274 None:intergenic 45.0%
TCATAGCTACCGTCCAACAA+CGG + chr1.1:56896387-56896406 MS.gene52949:CDS 45.0%
TCTTGTCCCTATGATTGCCA+GGG + chr1.1:56894843-56894862 MS.gene52949:CDS 45.0%
TGCAATATCATCAGGGAACC+TGG + chr1.1:56896590-56896609 MS.gene52949:intron 45.0%
TGCTACAACTGATGTGGTTG+AGG + chr1.1:56895126-56895145 MS.gene52949:CDS 45.0%
! AGAAGAGCTTTCTGAGGAGA+AGG + chr1.1:56896945-56896964 MS.gene52949:CDS 45.0%
! CGGTGTTAAAATGGAGTTGG+TGG + chr1.1:56894939-56894958 MS.gene52949:CDS 45.0%
! GGTGGATTCCCTAGAAAAGA+AGG + chr1.1:56895181-56895200 MS.gene52949:CDS 45.0%
!! ATCAAGGCATTGGTGTTTGC+CGG - chr1.1:56896000-56896019 None:intergenic 45.0%
!! CAGGGTACTGACTTGATGAA+TGG - chr1.1:56896164-56896183 None:intergenic 45.0%
ACAGTTGCGTGGTTGACATC+AGG - chr1.1:56896183-56896202 None:intergenic 50.0%
ACATGCTGCTGCAAACTGCA+AGG + chr1.1:56895273-56895292 MS.gene52949:CDS 50.0%
ATAGCTACCGTCCAACAACG+GGG + chr1.1:56896389-56896408 MS.gene52949:CDS 50.0%
ATCACTCCCCTGGCAATCAT+AGG - chr1.1:56894853-56894872 None:intergenic 50.0%
ATTGGACCATAACAGGGCTC+TGG + chr1.1:56896074-56896093 MS.gene52949:CDS 50.0%
CAAGCACTTGTGAGACTGCT+TGG + chr1.1:56895472-56895491 MS.gene52949:intron 50.0%
CAGTTGCGTGGTTGACATCA+GGG - chr1.1:56896182-56896201 None:intergenic 50.0%
CATAGCTACCGTCCAACAAC+GGG + chr1.1:56896388-56896407 MS.gene52949:CDS 50.0%
CATCATCAGCCACGAGTTCA+CGG - chr1.1:56896233-56896252 None:intergenic 50.0%
CCAGTGACAAGAACACGAAC+AGG - chr1.1:56894132-56894151 None:intergenic 50.0%
CCTGTTCGTGTTCTTGTCAC+TGG + chr1.1:56894129-56894148 MS.gene52949:CDS 50.0%
CTCTTGTCCCTATGATTGCC+AGG + chr1.1:56894842-56894861 MS.gene52949:CDS 50.0%
CTTGTCCCTATGATTGCCAG+GGG + chr1.1:56894844-56894863 MS.gene52949:CDS 50.0%
GACAGCAGAAGAGCTTTCTG+AGG + chr1.1:56896939-56896958 MS.gene52949:CDS 50.0%
GAGCTCATGGAAACAGCTCA+TGG + chr1.1:56895497-56895516 MS.gene52949:intron 50.0%
GGATCTTACAATGTACCCGC+TGG + chr1.1:56896637-56896656 MS.gene52949:CDS 50.0%
GTCAAGCATGTGGAGGATCA+CGG - chr1.1:56894893-56894912 None:intergenic 50.0%
TCAAGCATGTGGAGGATCAC+GGG - chr1.1:56894892-56894911 None:intergenic 50.0%
TCACAACTCGCAATGGCGAA+TGG + chr1.1:56896680-56896699 MS.gene52949:CDS 50.0%
TCACTCCCCTGGCAATCATA+GGG - chr1.1:56894852-56894871 None:intergenic 50.0%
TTCCCTGTCACAACTCGCAA+TGG + chr1.1:56896673-56896692 MS.gene52949:CDS 50.0%
TTGGACCATAACAGGGCTCT+GGG + chr1.1:56896075-56896094 MS.gene52949:CDS 50.0%
TTTGACCCAGAGCCCTGTTA+TGG - chr1.1:56896083-56896102 None:intergenic 50.0%
! GCTTTCTGAGGAGAAGGCTT+TGG + chr1.1:56896951-56896970 MS.gene52949:CDS 50.0%
!! GTTCTAGGAACTCCTGAGGT+TGG + chr1.1:56896491-56896510 MS.gene52949:intron 50.0%
!! TCAAGGCATTGGTGTTTGCC+GGG - chr1.1:56895999-56896018 None:intergenic 50.0%
!! TTGGGTTCTAGGAACTCCTG+AGG + chr1.1:56896487-56896506 MS.gene52949:CDS 50.0%
AAAGCCTGTCCGTGAACTCG+TGG + chr1.1:56896221-56896240 MS.gene52949:CDS 55.0%
AGACTGCTTGGGAGAGCTCA+TGG + chr1.1:56895484-56895503 MS.gene52949:intron 55.0%
ATTGCCAGGGGAGTGATGCT+CGG + chr1.1:56894856-56894875 MS.gene52949:CDS 55.0%
CCAGCAGCCGAATCACTGAA+CGG + chr1.1:56894919-56894938 MS.gene52949:CDS 55.0%
CGCCATTGCGAGTTGTGACA+GGG - chr1.1:56896678-56896697 None:intergenic 55.0%
CTGGTGGGATGTCAAGCATG+TGG - chr1.1:56894903-56894922 None:intergenic 55.0%
GATGTGGTTGAGGGATGCAC+TGG + chr1.1:56895136-56895155 MS.gene52949:CDS 55.0%
GGGGAGGAGGAACCATAGAA+TGG - chr1.1:56895387-56895406 None:intergenic 55.0%
GTGGGATGTCAAGCATGTGG+AGG - chr1.1:56894900-56894919 None:intergenic 55.0%
TCGCCATTGCGAGTTGTGAC+AGG - chr1.1:56896679-56896698 None:intergenic 55.0%
TGATTGCAGCACCCCGTTGT+TGG - chr1.1:56896403-56896422 None:intergenic 55.0%
! AACTCGTGGCTGATGATGCC+TGG + chr1.1:56896235-56896254 MS.gene52949:CDS 55.0%
! TCAGTGATTCGGCTGCTGGT+GGG - chr1.1:56894918-56894937 None:intergenic 55.0%
! TTCAGTGATTCGGCTGCTGG+TGG - chr1.1:56894919-56894938 None:intergenic 55.0%
!! CAGGGAACCTGGGTATCGAT+GGG + chr1.1:56896601-56896620 MS.gene52949:intron 55.0%
!! GTTCTTGTCACTGGTGCTGC+AGG + chr1.1:56894138-56894157 MS.gene52949:CDS 55.0%
!! TCAGGGAACCTGGGTATCGA+TGG + chr1.1:56896600-56896619 MS.gene52949:intron 55.0%
GGCAACAACGAGGACCTGCA+TGG - chr1.1:56895974-56895993 None:intergenic 60.0%
GGTCCTCGTTGTTGCCAACC+CGG + chr1.1:56895978-56895997 MS.gene52949:intron 60.0%
TCAGCCACGAGTTCACGGAC+AGG - chr1.1:56896228-56896247 None:intergenic 60.0%
TGCAGCACCCCGTTGTTGGA+CGG - chr1.1:56896399-56896418 None:intergenic 60.0%
! CCGTTCAGTGATTCGGCTGC+TGG - chr1.1:56894922-56894941 None:intergenic 60.0%
!! GGCATTGGTGTTTGCCGGGT+TGG - chr1.1:56895995-56896014 None:intergenic 60.0%
!! TTGCCGGGTTGGCAACAACG+AGG - chr1.1:56895984-56896003 None:intergenic 60.0%
GCATGTGGAGGATCACGGGC+TGG - chr1.1:56894888-56894907 None:intergenic 65.0%
GTGGTCACAAGCAGCGCTCG+CGG - chr1.1:56896459-56896478 None:intergenic 65.0%
!! GGAGGATCACGGGCTGGTCA+GGG - chr1.1:56894882-56894901 None:intergenic 65.0%
!! TGGAGGATCACGGGCTGGTC+AGG - chr1.1:56894883-56894902 None:intergenic 65.0%
AGGGCCGAGCATCACTCCCC+TGG - chr1.1:56894863-56894882 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56894117 56896993 56894117 ID=MS.gene52949
chr1.1 mRNA 56894117 56896993 56894117 ID=MS.gene52949.t1;Parent=MS.gene52949
chr1.1 exon 56894117 56894159 56894117 ID=MS.gene52949.t1.exon1;Parent=MS.gene52949.t1
chr1.1 CDS 56894117 56894159 56894117 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56894827 56894985 56894827 ID=MS.gene52949.t1.exon2;Parent=MS.gene52949.t1
chr1.1 CDS 56894827 56894985 56894827 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56895119 56895294 56895119 ID=MS.gene52949.t1.exon3;Parent=MS.gene52949.t1
chr1.1 CDS 56895119 56895294 56895119 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56895979 56896256 56895979 ID=MS.gene52949.t1.exon4;Parent=MS.gene52949.t1
chr1.1 CDS 56895979 56896256 56895979 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56896373 56896508 56896373 ID=MS.gene52949.t1.exon5;Parent=MS.gene52949.t1
chr1.1 CDS 56896373 56896508 56896373 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56896604 56896715 56896604 ID=MS.gene52949.t1.exon6;Parent=MS.gene52949.t1
chr1.1 CDS 56896604 56896715 56896604 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
chr1.1 exon 56896899 56896993 56896899 ID=MS.gene52949.t1.exon7;Parent=MS.gene52949.t1
chr1.1 CDS 56896899 56896993 56896899 ID=cds.MS.gene52949.t1;Parent=MS.gene52949.t1
Gene Sequence

>MS.gene52949

ATGGCTAAAGACCCTGTTCGTGTTCTTGTCACTGGTGCTGCAGGTAACCATAATAAATTCTGGGTTTCTCTCAAAATTATGTCTTTTGTTTTGTTTAAGGATATTTTATTATCATATGTTTTTTTTTTATCAGATCTGATCTGATCCTTGTATCATGTTTCTTGATTGGTTTTATTTAGAAATAGAACTATGTTTGGTTTATAATTGCATTAGCTCTTGATTTCTCATGATATGTGCTTACTCTATGATCAATTAAGAAAATAAAAAATCCTAGTAGTTGCAAGCAGTTAATATATTTTTTAAAAAATTTATATGCATTTACTTTCATTTGTTAAAAATAGATCCCTTATAATTATGCAATTTTCTGATAGTATACCTCAATTGTAGTATTTTCCCTATTTGAGAGTTTATAGAAATAACATATGACATGTTTATAAGTTGTTTTCAGTTTATTTCCATAATCTCTCTAGGATAACTTGTGAAAAAAAGCTTGTAGTATATATGAAAACAATTTGTCTTTATTTTAACTTTTGATATAGAAATAGCTTATGCATAATCATTTATACATTTTAAGCATTTATGCTATAAGTGTTTAGTGAAGTTGTTTATCCAAATATGGTTAAAATGTTTACAAAAGCAATTTTTGATTTCAACATAAAATCTTTGAGGCATATTTTTTTTTGTACTAAAAAATGTTTTGCCAATTTTAGGACAAATTGGATATGCTCTTGTCCCTATGATTGCCAGGGGAGTGATGCTCGGCCCTGACCAGCCCGTGATCCTCCACATGCTTGACATCCCACCAGCAGCCGAATCACTGAACGGTGTTAAAATGGAGTTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTTTGAGTTTTATTCTTTGCTAAATGTTACTTGAACTTCTTGGACTGCCATATTTCTGGTTTGAAGTTGGATTGTGTTGGTTGATTAAATGCTTTGCAAGATTAAAAGGTATTGTGAAAATTATTTGTTTCAGGTGTTGTTGCTACAACTGATGTGGTTGAGGGATGCACTGGAGTCAATATTGCTGTTATGGTTGGTGGATTCCCTAGAAAAGAAGGTATGGAGAGGAAAGATGTGATGACAAAAAATGTCTCTATTTACAAGTCCCAAGCTTCTGCTCTTGAGAAACATGCTGCTGCAAACTGCAAGGTGATCCTTTAATTCTGAATGCTCAAGCTTTTGTCTTAATTAATTTCAATTTCTAGTTCTGCCGCATTTTATGTCAAAAAAAATATGTTCCATTCTATGGTTCCTCCTCCCCCTTTTTCATGTATCTCTTTCAGACCTGTTTGGATTGACTTATTTGAACTTATATACTACCATAAGCAAGCACTTGTGAGACTGCTTGGGAGAGCTCATGGAAACAGCTCATGGCATGTTCGTGAGATGTTTTCAGCTTATTTCCATAAGCTCTACAGGATAGCTTATGAAAACAGTTCATAGTTTATATGAAAACAATTTGACTTTATTTTATTGTTTTTTATAGAAATAGCTTACACATAAGCACTTATGCCGTACGAATTTAATTAAGTTGTTGGCTGATCGATTGATTGAACGCTATTATTGTCATAGTTTTTGTGTGATGGTGATAAGTGTAAAGCCAATACATTACCTGCACTGAATTTATTTTAGTTTAGTGCTGAAAAAGTGGTTCCATCTGGTTGGTTCATGTGTATTTTGGTCATATATGGCAAAGTCCTTGTGATTCCATTCTGGTGAAATCTGTTTCTTTTCTTCACAGAAAATGAGTAGTCCTTTTTACATATTTTTGGAAACATCAATTACATTTTATGTATTTCCTTACATTTCTTTAAACTCTGTATCACCATGCAGGTCCTCGTTGTTGCCAACCCGGCAAACACCAATGCCTTGATCTTGAAGGAATTCGCTCCATCCATTCCTGAGAAAAACATTTCTTGTTTGACAAGATTGGACCATAACAGGGCTCTGGGTCAAATTTCTGAAAGACTGAACGTTGAAGTTTCTAATGTGAAAAATGTTATAATTTGGGGCAACCATTCATCAAGTCAGTACCCTGATGTCAACCACGCAACTGTTAAAATTGCTTCTGCAGAAAAGCCTGTCCGTGAACTCGTGGCTGATGATGCCTGGTATGTTGATGGACAAATACAATGACTTGCAATTTAAACTTTTTTTTACGTATTTATTACATTTTTTTTTTCCATTTTGCATTTACTGAAGTATTGATGTAATTTTCATCGTCAAGGTTAAATGGAGAATTCATAGCTACCGTCCAACAACGGGGTGCTGCAATCATTAAAGCTAGAAAGCTTTCAAGTGCACTATCTGCCGCGAGCGCTGCTTGTGACCACATTAGAGATTGGGTTCTAGGAACTCCTGAGGTTGGTTATGTCTTGCTCAATCTTTGATTCAAATTCTTTATATTGAATGGCTTCAACCAAGGTTTATGTTTATCTTTTCATTGCAATATCATCAGGGAACCTGGGTATCGATGGGAGTTTATTCTGATGGATCTTACAATGTACCCGCTGGACTAATCTATTCATTCCCTGTCACAACTCGCAATGGCGAATGGCAAATAGTTCAAGGTAAGATTTTGATAAATTATTGCTGGCTCTTGAATTCTTGTTGTTTTAAGTGTTAATACTTCATACTTAAACGTTTGTCCGTCTTTTATTTGTAAATTAAGGCATAGTTGTTTTATATAGCAAATAAAGGTTTGATTTGTGTATGTATCTGATGTAATTAAATCTGTCTAATTTTTTAACCAGGACTATCAATTGATGAGTTTTCAAGGAAAAAATTGGACTTGACAGCAGAAGAGCTTTCTGAGGAGAAGGCTTTGGCTTACTCATGCCTCTCTTAG
Protein sequence

>MS.gene52949.t1

MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEGCTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVEVSNVKNVIIWGNHSSSQYPDVNHATVKIASAEKPVRELVADDAWLNGEFIATVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTTRNGEWQIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCLS