Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52989.t1 | KEH42753.1 | 96.6 | 712 | 24 | 0 | 1 | 712 | 21 | 732 | 0.00E+00 | 1342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52989.t1 | Q66GN3 | 51.5 | 723 | 331 | 7 | 2 | 712 | 25 | 739 | 1.1e-194 | 681.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52989.t1 | A0A072VMT9 | 96.6 | 712 | 24 | 0 | 1 | 712 | 21 | 732 | 0.0e+00 | 1342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene52989 | 0.827168 | 1.82E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene52989 | 0.854468 | 1.21E-61 | -1.69E-46 |
| MS.gene051744 | MS.gene52989 | 0.837064 | 6.48E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene52989 | 0.804322 | 2.28E-49 | -1.69E-46 |
| MS.gene052768 | MS.gene52989 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene053296 | MS.gene52989 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene52989 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene52989 | 0.811028 | 8.59E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene52989 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene52989 | 0.829537 | 4.87E-55 | -1.69E-46 |
| MS.gene059625 | MS.gene52989 | 0.801259 | 9.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52989.t1 | MTR_1g075480 | 97.051 | 712 | 21 | 0 | 1 | 712 | 21 | 732 | 0.0 | 1422 |
| MS.gene52989.t1 | MTR_1g075480 | 97.051 | 712 | 21 | 0 | 1 | 712 | 34 | 745 | 0.0 | 1420 |
| MS.gene52989.t1 | MTR_1g075480 | 96.643 | 715 | 21 | 1 | 1 | 712 | 34 | 748 | 0.0 | 1416 |
| MS.gene52989.t1 | MTR_1g075480 | 97.204 | 608 | 17 | 0 | 1 | 608 | 21 | 628 | 0.0 | 1223 |
| MS.gene52989.t1 | MTR_1g069630 | 58.865 | 705 | 277 | 6 | 15 | 712 | 15 | 713 | 0.0 | 804 |
| MS.gene52989.t1 | MTR_7g097230 | 56.172 | 721 | 300 | 7 | 1 | 712 | 15 | 728 | 0.0 | 767 |
| MS.gene52989.t1 | MTR_7g097230 | 55.674 | 564 | 237 | 5 | 1 | 555 | 15 | 574 | 0.0 | 587 |
| MS.gene52989.t1 | MTR_5g026810 | 44.921 | 699 | 363 | 9 | 21 | 711 | 8 | 692 | 0.0 | 577 |
| MS.gene52989.t1 | MTR_8g071330 | 43.857 | 700 | 368 | 11 | 21 | 711 | 2 | 685 | 0.0 | 561 |
| MS.gene52989.t1 | MTR_1g018040 | 42.105 | 722 | 396 | 9 | 4 | 711 | 3 | 716 | 1.55e-176 | 521 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52989.t1 | AT4G28600 | 51.729 | 723 | 329 | 8 | 2 | 712 | 25 | 739 | 0.0 | 689 |
| MS.gene52989.t1 | AT4G28600 | 51.729 | 723 | 329 | 8 | 2 | 712 | 25 | 739 | 0.0 | 689 |
| MS.gene52989.t1 | AT4G28600 | 51.374 | 728 | 329 | 9 | 2 | 712 | 25 | 744 | 0.0 | 684 |
| MS.gene52989.t1 | AT2G43040 | 44.767 | 688 | 362 | 9 | 32 | 711 | 23 | 700 | 0.0 | 549 |
| MS.gene52989.t1 | AT2G43040 | 44.767 | 688 | 362 | 9 | 32 | 711 | 23 | 700 | 0.0 | 549 |
| MS.gene52989.t1 | AT1G27460 | 39.917 | 719 | 389 | 12 | 4 | 711 | 3 | 689 | 1.37e-157 | 472 |
| MS.gene52989.t1 | AT1G27460 | 40.056 | 719 | 392 | 12 | 4 | 711 | 3 | 693 | 1.86e-157 | 472 |
| MS.gene52989.t1 | AT1G27460 | 39.892 | 554 | 305 | 8 | 4 | 546 | 3 | 539 | 5.13e-120 | 370 |
Find 95 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTCTCCATTGTTTC+TGG | 0.103677 | 1.1:+56452944 | None:intergenic |
| AAGATGTTATCTTATCATTT+AGG | 0.224670 | 1.1:-56453252 | MS.gene52989:CDS |
| GCCTCTTCTATGTTGTTTCT+TGG | 0.226248 | 1.1:+56453091 | None:intergenic |
| CTTTAGATCAAAGCGGAAAA+TGG | 0.229271 | 1.1:-56452367 | MS.gene52989:CDS |
| ACTTCTCTACAAAGCTGATT+TGG | 0.244443 | 1.1:-56451073 | MS.gene52989:CDS |
| TTGTGGACTGCGTTTATTAT+TGG | 0.286116 | 1.1:+56453771 | None:intergenic |
| AAATCTAGGAACTGCAAATA+AGG | 0.308744 | 1.1:-56452231 | MS.gene52989:CDS |
| ATCAAACTTGCCACATGGTT+TGG | 0.348661 | 1.1:+56451216 | None:intergenic |
| AAAAGGTGTTATTGTCTAAA+GGG | 0.350616 | 1.1:+56450979 | None:intergenic |
| CAAACTCTTGGAAGGTTTCA+AGG | 0.355060 | 1.1:-56453670 | MS.gene52989:intron |
| CTTCTCTACAAAGCTGATTT+GGG | 0.359543 | 1.1:-56451072 | MS.gene52989:CDS |
| TGCAATCTAGAAGCGGAATA+AGG | 0.365185 | 1.1:+56451939 | None:intergenic |
| GCTATTGCAAATTGTTTACT+AGG | 0.372778 | 1.1:-56452689 | MS.gene52989:CDS |
| GGAAAGCCTTGCTTTATCAT+TGG | 0.376906 | 1.1:-56453231 | MS.gene52989:CDS |
| GAAGACTAGAAATGGAAGTT+TGG | 0.389941 | 1.1:-56452043 | MS.gene52989:CDS |
| TAGGAAGCTAGAGCCTTGTT+AGG | 0.391721 | 1.1:-56453907 | MS.gene52989:CDS |
| GGAAGACTTGAGTATCAAAA+AGG | 0.405055 | 1.1:-56453886 | MS.gene52989:CDS |
| TCTTTCGCTCTGAGTGTTTG+TGG | 0.407566 | 1.1:-56453007 | MS.gene52989:CDS |
| GCTAAATCATTGCAAACTCT+TGG | 0.409763 | 1.1:-56453682 | MS.gene52989:CDS |
| TCGCGACAGAAGACTAGAAA+TGG | 0.422836 | 1.1:-56452051 | MS.gene52989:CDS |
| AGGCGAGCATATAGTTGCTT+TGG | 0.422943 | 1.1:-56452885 | MS.gene52989:CDS |
| TAGAACTGCTTCCGGAGTTA+TGG | 0.430356 | 1.1:-56453294 | MS.gene52989:CDS |
| GCTGCACTTCATGTATTTGA+AGG | 0.441433 | 1.1:-56453853 | MS.gene52989:CDS |
| TCATCTGCATGGTACAATCT+TGG | 0.445464 | 1.1:-56451096 | MS.gene52989:CDS |
| CATCAGAGTCCCTTGCAACT+AGG | 0.452176 | 1.1:-56454231 | MS.gene52989:CDS |
| CGCAAAGAAACTGATTAAGC+TGG | 0.463190 | 1.1:-56452483 | MS.gene52989:CDS |
| GCATGGAAAATGTAATCAAA+TGG | 0.470470 | 1.1:-56452714 | MS.gene52989:CDS |
| AAATGCTGTAGAACTGCTTC+CGG | 0.471565 | 1.1:-56453302 | MS.gene52989:CDS |
| ATCAGAGTCCCTTGCAACTA+GGG | 0.473346 | 1.1:-56454230 | MS.gene52989:CDS |
| TGATAAAGTGTGTGTGTTCA+AGG | 0.476700 | 1.1:-56454285 | MS.gene52989:CDS |
| TTTAGATCAAAGCGGAAAAT+GGG | 0.477721 | 1.1:-56452366 | MS.gene52989:CDS |
| TATTGTCTAAAGGGTTCAAT+GGG | 0.486431 | 1.1:+56450988 | None:intergenic |
| TTATTGTCTAAAGGGTTCAA+TGG | 0.487445 | 1.1:+56450987 | None:intergenic |
| ATCAACTGCAAGAATACAAA+AGG | 0.489122 | 1.1:-56453194 | MS.gene52989:CDS |
| AATCATTGCAAACTCTTGGA+AGG | 0.491758 | 1.1:-56453678 | MS.gene52989:CDS |
| ACAGCATGTATCGACATAGA+AGG | 0.498706 | 1.1:+56453736 | None:intergenic |
| AACTGCAAATAAGGTTATGA+AGG | 0.507160 | 1.1:-56452222 | MS.gene52989:intron |
| AGATTTAGCAAGACAAACTT+CGG | 0.507247 | 1.1:+56451974 | None:intergenic |
| GCTCTTTGTTACTGCGGTGA+AGG | 0.509858 | 1.1:-56452905 | MS.gene52989:CDS |
| CAAAGATTAAGAACAATGTA+AGG | 0.511122 | 1.1:+56452551 | None:intergenic |
| AAGTGGTTATTTAAACTATG+AGG | 0.522868 | 1.1:-56454107 | MS.gene52989:intron |
| GAATCCTCTCTACGTGAAAG+TGG | 0.526854 | 1.1:-56454124 | MS.gene52989:CDS |
| GCTTGTGTTCTGAGAAAACT+TGG | 0.530375 | 1.1:-56451186 | MS.gene52989:CDS |
| AAACACTCAGAGCGAAAGAA+AGG | 0.530554 | 1.1:+56453011 | None:intergenic |
| CAAAGCGGAAAATGGGATCA+AGG | 0.534119 | 1.1:-56452359 | MS.gene52989:CDS |
| GCTTTAATGCATCAGTGAGA+AGG | 0.537010 | 1.1:+56451133 | None:intergenic |
| CTCGGTATACTCAGATTGCA+TGG | 0.538524 | 1.1:-56452828 | MS.gene52989:CDS |
| GCTTCTAGATTGCACTCCAC+AGG | 0.542659 | 1.1:-56451930 | MS.gene52989:intron |
| AATCTGCATTACCAGAAGGT+TGG | 0.547530 | 1.1:-56453369 | MS.gene52989:CDS |
| ATAACCACTTTCACGTAGAG+AGG | 0.556218 | 1.1:+56454120 | None:intergenic |
| CCACTTCGCTCTCAGTTGAA+CGG | 0.557614 | 1.1:-56453124 | MS.gene52989:CDS |
| AGCTTCTGAGAAATTGATGA+AGG | 0.560809 | 1.1:-56452582 | MS.gene52989:CDS |
| ATACTCAAGTCTTCCTAACA+AGG | 0.561665 | 1.1:+56453894 | None:intergenic |
| GGAATTACTTCCAGAAACAA+TGG | 0.562728 | 1.1:-56452954 | MS.gene52989:CDS |
| CTGAATAGTCCCTAGTTGCA+AGG | 0.563955 | 1.1:+56454221 | None:intergenic |
| TGATTTGGGAACATCAGCAT+TGG | 0.571232 | 1.1:-56451058 | MS.gene52989:CDS |
| AGGTGAAAATGATACAAAGT+TGG | 0.571771 | 1.1:-56454170 | MS.gene52989:CDS |
| GACACTAGCTCAACAAGTTG+AGG | 0.581000 | 1.1:-56452975 | MS.gene52989:CDS |
| GGCATCATGCCACCGTGACA+AGG | 0.582269 | 1.1:+56451995 | None:intergenic |
| CATCTTGAGGTGAGCCTGCG+AGG | 0.583442 | 1.1:+56453269 | None:intergenic |
| TTTGTACAGCGGCTACGAAG+CGG | 0.590359 | 1.1:-56453155 | MS.gene52989:CDS |
| AAACTGATTAAGCTGGAAGG+TGG | 0.590664 | 1.1:-56452476 | MS.gene52989:CDS |
| AAGATTCCAATGATAAAGCA+AGG | 0.591180 | 1.1:+56453225 | None:intergenic |
| AGTGGTTATTCATCTCGTCC+AGG | 0.592091 | 1.1:-56454190 | MS.gene52989:CDS |
| AATGATAAGATAACATCTTG+AGG | 0.602817 | 1.1:+56453256 | None:intergenic |
| GGTTTACTTTATGAAGCAAG+AGG | 0.603995 | 1.1:-56451288 | MS.gene52989:CDS |
| TGAATAGTCCCTAGTTGCAA+GGG | 0.604887 | 1.1:+56454222 | None:intergenic |
| GTTGAATCTGCATTACCAGA+AGG | 0.604979 | 1.1:-56453373 | MS.gene52989:CDS |
| CCGGAGTTATGGAACCTCGC+AGG | 0.605747 | 1.1:-56453283 | MS.gene52989:CDS |
| TCAAAAGAAGTTTGTAGATG+CGG | 0.610615 | 1.1:-56452408 | MS.gene52989:CDS |
| AACAAGGTTTGTGTCGAAGA+CGG | 0.611581 | 1.1:-56452770 | MS.gene52989:CDS |
| TTGATATCAAACTTGCCACA+TGG | 0.611629 | 1.1:+56451211 | None:intergenic |
| AAGGCAATTTCTCAGATGCA+TGG | 0.611767 | 1.1:-56452731 | MS.gene52989:CDS |
| GCCAAGAAACAACATAGAAG+AGG | 0.614198 | 1.1:-56453092 | MS.gene52989:CDS |
| TTCAACTGAGAGCGAAGTGG+AGG | 0.614284 | 1.1:+56453127 | None:intergenic |
| CCTGCGAGGTTCCATAACTC+CGG | 0.616519 | 1.1:+56453283 | None:intergenic |
| GAAGGTGGGTCGAGTATTAG+CGG | 0.617728 | 1.1:-56452461 | MS.gene52989:CDS |
| GACTATTCAGCATCAGCAAG+TGG | 0.619590 | 1.1:-56454208 | MS.gene52989:CDS |
| ACAAAACAAACTCATCTGCA+TGG | 0.622329 | 1.1:-56451107 | MS.gene52989:CDS |
| AACTGATTAAGCTGGAAGGT+GGG | 0.623802 | 1.1:-56452475 | MS.gene52989:CDS |
| GATAAAGTGTGTGTGTTCAA+GGG | 0.624345 | 1.1:-56454284 | MS.gene52989:CDS |
| ATGTGTACACAGCCTTGTCA+CGG | 0.636930 | 1.1:-56452007 | MS.gene52989:CDS |
| ACTCTAGCTCTTTGTTACTG+CGG | 0.637326 | 1.1:-56452911 | MS.gene52989:CDS |
| TGTGTTCTGAGAAAACTTGG+TGG | 0.639416 | 1.1:-56451183 | MS.gene52989:CDS |
| GAAGGCACTGAATCGCGTTG+TGG | 0.640136 | 1.1:+56453754 | None:intergenic |
| AAGAAACTGATTAAGCTGGA+AGG | 0.640610 | 1.1:-56452479 | MS.gene52989:CDS |
| CCGTTCAACTGAGAGCGAAG+TGG | 0.647279 | 1.1:+56453124 | None:intergenic |
| GCTAAGATTCAGATTGCACA+AGG | 0.653500 | 1.1:-56452317 | MS.gene52989:CDS |
| TGTGGAGTGCAATCTAGAAG+CGG | 0.658093 | 1.1:+56451932 | None:intergenic |
| GATGCTGCTTTAGATCAAAG+CGG | 0.675910 | 1.1:-56452374 | MS.gene52989:CDS |
| TGACAAGGCTGTGTACACAT+TGG | 0.676429 | 1.1:+56452010 | None:intergenic |
| AGATATTGAGCCAAACCATG+TGG | 0.706345 | 1.1:-56451226 | MS.gene52989:CDS |
| GCGGATATAAACTACTAGCG+CGG | 0.708738 | 1.1:-56452442 | MS.gene52989:CDS |
| TGTACACAGCCTTGTCACGG+TGG | 0.722089 | 1.1:-56452004 | MS.gene52989:CDS |
| GGTATACTCAGATTGCATGG+AGG | 0.769198 | 1.1:-56452825 | MS.gene52989:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAACTTATACAAAAATG+TGG | + | chr1.1:56453728-56453747 | None:intergenic | 15.0% |
| !!! | TTAAATCTATGTTTTAATAC+AGG | - | chr1.1:56453150-56453169 | MS.gene52989:CDS | 15.0% |
| !! | AAGATGTTATCTTATCATTT+AGG | - | chr1.1:56452021-56452040 | MS.gene52989:CDS | 20.0% |
| !!! | CTTTTTTTTTTTTTTTGCTG+TGG | + | chr1.1:56453808-56453827 | None:intergenic | 20.0% |
| ! | AAAACAAATCACAAACATGA+TGG | - | chr1.1:56453485-56453504 | MS.gene52989:intron | 25.0% |
| ! | AAGTGGTTATTTAAACTATG+AGG | - | chr1.1:56451166-56451185 | MS.gene52989:CDS | 25.0% |
| ! | AATGATAAGATAACATCTTG+AGG | + | chr1.1:56452020-56452039 | None:intergenic | 25.0% |
| ! | CAAAGATTAAGAACAATGTA+AGG | + | chr1.1:56452725-56452744 | None:intergenic | 25.0% |
| ! | CAAGTCCATAATAAAAATCT+AGG | - | chr1.1:56453028-56453047 | MS.gene52989:CDS | 25.0% |
| ! | TCAATAAGTTAAGTTTATGC+AGG | - | chr1.1:56453964-56453983 | MS.gene52989:intron | 25.0% |
| ! | TTTGAAAAATAGAGAGAACT+CGG | - | chr1.1:56452427-56452446 | MS.gene52989:CDS | 25.0% |
| !! | CAGTTCCTAGATTTTTATTA+TGG | + | chr1.1:56453036-56453055 | None:intergenic | 25.0% |
| !! | GATATAGACATTTTCATCTT+TGG | + | chr1.1:56451468-56451487 | None:intergenic | 25.0% |
| !! | TTTGTTAAGACAATTGCTTT+TGG | + | chr1.1:56453751-56453770 | None:intergenic | 25.0% |
| !!! | ACAATCTGAAACAAAGTTTT+CGG | + | chr1.1:56451931-56451950 | None:intergenic | 25.0% |
| AAAAATTTGTGCAGACAACA+AGG | - | chr1.1:56452487-56452506 | MS.gene52989:CDS | 30.0% | |
| AAATCTAGGAACTGCAAATA+AGG | - | chr1.1:56453042-56453061 | MS.gene52989:CDS | 30.0% | |
| AACTGCAAATAAGGTTATGA+AGG | - | chr1.1:56453051-56453070 | MS.gene52989:CDS | 30.0% | |
| AAGATTCCAATGATAAAGCA+AGG | + | chr1.1:56452051-56452070 | None:intergenic | 30.0% | |
| AGATAAACAGTATATACCTG+TGG | + | chr1.1:56453362-56453381 | None:intergenic | 30.0% | |
| AGATTTAGCAAGACAAACTT+CGG | + | chr1.1:56453302-56453321 | None:intergenic | 30.0% | |
| AGGTGAAAATGATACAAAGT+TGG | - | chr1.1:56451103-56451122 | MS.gene52989:CDS | 30.0% | |
| AGTCTATATACTCAGACAAA+TGG | + | chr1.1:56453448-56453467 | None:intergenic | 30.0% | |
| ATCAACTGCAAGAATACAAA+AGG | - | chr1.1:56452079-56452098 | MS.gene52989:intron | 30.0% | |
| GCATAGTTTACAACACAATT+AGG | - | chr1.1:56451795-56451814 | MS.gene52989:intron | 30.0% | |
| GCATGGAAAATGTAATCAAA+TGG | - | chr1.1:56452559-56452578 | MS.gene52989:CDS | 30.0% | |
| GCTATTGCAAATTGTTTACT+AGG | - | chr1.1:56452584-56452603 | MS.gene52989:CDS | 30.0% | |
| GGTTATTTAAACTATGAGGT+TGG | - | chr1.1:56451170-56451189 | MS.gene52989:CDS | 30.0% | |
| TAAGTTCATGTTTATGTCTG+CGG | + | chr1.1:56453889-56453908 | None:intergenic | 30.0% | |
| TATTGTCTAAAGGGTTCAAT+GGG | + | chr1.1:56454288-56454307 | None:intergenic | 30.0% | |
| TCAAAAGAAGTTTGTAGATG+CGG | - | chr1.1:56452865-56452884 | MS.gene52989:CDS | 30.0% | |
| TGTTATTGAAAGTCAAGCTA+GGG | + | chr1.1:56453398-56453417 | None:intergenic | 30.0% | |
| TTAAACTGTTCATCCAAACA+TGG | + | chr1.1:56451261-56451280 | None:intergenic | 30.0% | |
| TTATTGTCTAAAGGGTTCAA+TGG | + | chr1.1:56454289-56454308 | None:intergenic | 30.0% | |
| TTTAGATCAAAGCGGAAAAT+GGG | - | chr1.1:56452907-56452926 | MS.gene52989:CDS | 30.0% | |
| ! | AACTTTGTATCATTTTCACC+TGG | + | chr1.1:56451104-56451123 | None:intergenic | 30.0% |
| ! | CTAGATGAACTTTTCCTTAT+AGG | - | chr1.1:56451347-56451366 | MS.gene52989:intron | 30.0% |
| ! | TCTGACTTGAAACTAGAATT+TGG | - | chr1.1:56453631-56453650 | MS.gene52989:intron | 30.0% |
| ! | TTGTTATTGAAAGTCAAGCT+AGG | + | chr1.1:56453399-56453418 | None:intergenic | 30.0% |
| ! | TTTCAAGTCAGAATCAATTC+TGG | + | chr1.1:56453623-56453642 | None:intergenic | 30.0% |
| !! | CAATCTGAAACAAAGTTTTC+GGG | + | chr1.1:56451930-56451949 | None:intergenic | 30.0% |
| AAGAAACTGATTAAGCTGGA+AGG | - | chr1.1:56452794-56452813 | MS.gene52989:CDS | 35.0% | |
| AATCATTGCAAACTCTTGGA+AGG | - | chr1.1:56451595-56451614 | MS.gene52989:intron | 35.0% | |
| ACAAAACAAACTCATCTGCA+TGG | - | chr1.1:56454166-56454185 | MS.gene52989:CDS | 35.0% | |
| ACTTCTCTACAAAGCTGATT+TGG | - | chr1.1:56454200-56454219 | MS.gene52989:CDS | 35.0% | |
| AGAGGAGAACTGAACTTATA+AGG | + | chr1.1:56453423-56453442 | None:intergenic | 35.0% | |
| ATACTCAAGTCTTCCTAACA+AGG | + | chr1.1:56451382-56451401 | None:intergenic | 35.0% | |
| CAAACATGGTCTAAGTACAT+GGG | + | chr1.1:56451247-56451266 | None:intergenic | 35.0% | |
| CTTTAGATCAAAGCGGAAAA+TGG | - | chr1.1:56452906-56452925 | MS.gene52989:CDS | 35.0% | |
| GAAGACTAGAAATGGAAGTT+TGG | - | chr1.1:56453230-56453249 | MS.gene52989:CDS | 35.0% | |
| GAGGAGAACTGAACTTATAA+GGG | + | chr1.1:56453422-56453441 | None:intergenic | 35.0% | |
| GATAAAGTGTGTGTGTTCAA+GGG | - | chr1.1:56450989-56451008 | MS.gene52989:CDS | 35.0% | |
| GCTAAATCATTGCAAACTCT+TGG | - | chr1.1:56451591-56451610 | MS.gene52989:intron | 35.0% | |
| GGAAGACTTGAGTATCAAAA+AGG | - | chr1.1:56451387-56451406 | MS.gene52989:intron | 35.0% | |
| GGAATTACTTCCAGAAACAA+TGG | - | chr1.1:56452319-56452338 | MS.gene52989:CDS | 35.0% | |
| GGTTTACTTTATGAAGCAAG+AGG | - | chr1.1:56453985-56454004 | MS.gene52989:intron | 35.0% | |
| GTGTACAATTTAGCGTAGTT+TGG | - | chr1.1:56453507-56453526 | MS.gene52989:intron | 35.0% | |
| TGATAAAGTGTGTGTGTTCA+AGG | - | chr1.1:56450988-56451007 | MS.gene52989:CDS | 35.0% | |
| TTGATATCAAACTTGCCACA+TGG | + | chr1.1:56454065-56454084 | None:intergenic | 35.0% | |
| ! | AGCTTCTGAGAAATTGATGA+AGG | - | chr1.1:56452691-56452710 | MS.gene52989:CDS | 35.0% |
| ! | CTTCTCTACAAAGCTGATTT+GGG | - | chr1.1:56454201-56454220 | MS.gene52989:CDS | 35.0% |
| ! | TAACACAAAGTACCAACCAA+CGG | - | chr1.1:56453101-56453120 | MS.gene52989:CDS | 35.0% |
| ! | TTGTGGACTGCGTTTATTAT+TGG | + | chr1.1:56451505-56451524 | None:intergenic | 35.0% |
| !! | CGGAATCAAATTTTCAAGCA+AGG | - | chr1.1:56452523-56452542 | MS.gene52989:CDS | 35.0% |
| !! | TAGTTGCTTTGGATCTTTTG+AGG | - | chr1.1:56452399-56452418 | MS.gene52989:CDS | 35.0% |
| !!! | GCTTTGTTTCTTTTGTACAG+CGG | - | chr1.1:56452107-56452126 | MS.gene52989:intron | 35.0% |
| !!! | TCTTGAAGCTGTTTTTCTCA+AGG | - | chr1.1:56451569-56451588 | MS.gene52989:intron | 35.0% |
| AAACACTCAGAGCGAAAGAA+AGG | + | chr1.1:56452265-56452284 | None:intergenic | 40.0% | |
| AAACTGATTAAGCTGGAAGG+TGG | - | chr1.1:56452797-56452816 | MS.gene52989:CDS | 40.0% | |
| AAATGCTGTAGAACTGCTTC+CGG | - | chr1.1:56451971-56451990 | MS.gene52989:CDS | 40.0% | |
| AACAAGGTTTGTGTCGAAGA+CGG | - | chr1.1:56452503-56452522 | MS.gene52989:CDS | 40.0% | |
| AACTGATTAAGCTGGAAGGT+GGG | - | chr1.1:56452798-56452817 | MS.gene52989:CDS | 40.0% | |
| AAGGCAATTTCTCAGATGCA+TGG | - | chr1.1:56452542-56452561 | MS.gene52989:CDS | 40.0% | |
| AATCTGCATTACCAGAAGGT+TGG | - | chr1.1:56451904-56451923 | MS.gene52989:intron | 40.0% | |
| AGATATTGAGCCAAACCATG+TGG | - | chr1.1:56454047-56454066 | MS.gene52989:intron | 40.0% | |
| AGTTCCAATCATAGGGTTAG+AGG | + | chr1.1:56453665-56453684 | None:intergenic | 40.0% | |
| ATAACCACTTTCACGTAGAG+AGG | + | chr1.1:56451156-56451175 | None:intergenic | 40.0% | |
| ATACTCAGACAAATGGCAAG+AGG | + | chr1.1:56453441-56453460 | None:intergenic | 40.0% | |
| ATCAAACTTGCCACATGGTT+TGG | + | chr1.1:56454060-56454079 | None:intergenic | 40.0% | |
| CAAACTCTTGGAAGGTTTCA+AGG | - | chr1.1:56451603-56451622 | MS.gene52989:intron | 40.0% | |
| CCAAACATGGTCTAAGTACA+TGG | + | chr1.1:56451248-56451267 | None:intergenic | 40.0% | |
| CCATGTACTTAGACCATGTT+TGG | - | chr1.1:56451245-56451264 | MS.gene52989:CDS | 40.0% | |
| CGCAAAGAAACTGATTAAGC+TGG | - | chr1.1:56452790-56452809 | MS.gene52989:CDS | 40.0% | |
| GCCAAGAAACAACATAGAAG+AGG | - | chr1.1:56452181-56452200 | MS.gene52989:intron | 40.0% | |
| GCTAAGATTCAGATTGCACA+AGG | - | chr1.1:56452956-56452975 | MS.gene52989:CDS | 40.0% | |
| GCTGCACTTCATGTATTTGA+AGG | - | chr1.1:56451420-56451439 | MS.gene52989:intron | 40.0% | |
| GCTTTAATGCATCAGTGAGA+AGG | + | chr1.1:56454143-56454162 | None:intergenic | 40.0% | |
| GGAAAGCCTTGCTTTATCAT+TGG | - | chr1.1:56452042-56452061 | MS.gene52989:CDS | 40.0% | |
| GTCAGTATCAATGTCATGTC+TGG | - | chr1.1:56451703-56451722 | MS.gene52989:intron | 40.0% | |
| GTTGAATCTGCATTACCAGA+AGG | - | chr1.1:56451900-56451919 | MS.gene52989:intron | 40.0% | |
| TAACCCTATGATTGGAACTG+CGG | - | chr1.1:56453666-56453685 | MS.gene52989:intron | 40.0% | |
| TCATCTGCATGGTACAATCT+TGG | - | chr1.1:56454177-56454196 | MS.gene52989:CDS | 40.0% | |
| TCTCTTCTCTCCATTGTTTC+TGG | + | chr1.1:56452332-56452351 | None:intergenic | 40.0% | |
| TGAATAGTCCCTAGTTGCAA+GGG | + | chr1.1:56451054-56451073 | None:intergenic | 40.0% | |
| TGCAATCTAGAAGCGGAATA+AGG | + | chr1.1:56453337-56453356 | None:intergenic | 40.0% | |
| TTTGCCTCTAACCCTATGAT+TGG | - | chr1.1:56453658-56453677 | MS.gene52989:intron | 40.0% | |
| ! | AAAGTACCAACCAACGGAAA+AGG | - | chr1.1:56453107-56453126 | MS.gene52989:CDS | 40.0% |
| ! | AAGTTTCCTTTTCCGTTGGT+TGG | + | chr1.1:56453116-56453135 | None:intergenic | 40.0% |
| ! | ACAGCATGTATCGACATAGA+AGG | + | chr1.1:56451540-56451559 | None:intergenic | 40.0% |
| ! | ACTACTAGCGCGGATTTTAT+CGG | - | chr1.1:56452841-56452860 | MS.gene52989:CDS | 40.0% |
| ! | CTCTAAGTTTCCTTTTCCGT+TGG | + | chr1.1:56453120-56453139 | None:intergenic | 40.0% |
| ! | TGATTTGGGAACATCAGCAT+TGG | - | chr1.1:56454215-56454234 | MS.gene52989:CDS | 40.0% |
| !! | ACTCTAGCTCTTTGTTACTG+CGG | - | chr1.1:56452362-56452381 | MS.gene52989:CDS | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+CGG | - | chr1.1:56452899-56452918 | MS.gene52989:CDS | 40.0% |
| !! | GCCTCTTCTATGTTGTTTCT+TGG | + | chr1.1:56452185-56452204 | None:intergenic | 40.0% |
| !! | GCTTGTGTTCTGAGAAAACT+TGG | - | chr1.1:56454087-56454106 | MS.gene52989:intron | 40.0% |
| !! | TAGTTTGGTTCCACTTTTGG+AGG | - | chr1.1:56453522-56453541 | MS.gene52989:intron | 40.0% |
| !! | TGTGTTCTGAGAAAACTTGG+TGG | - | chr1.1:56454090-56454109 | MS.gene52989:intron | 40.0% |
| AAGCAACCTTAGCACCTGTT+TGG | - | chr1.1:56453825-56453844 | MS.gene52989:CDS | 45.0% | |
| AATTTCGCCTCCTCCAAAAG+TGG | + | chr1.1:56453535-56453554 | None:intergenic | 45.0% | |
| ACATCACCATGCAACCAAAC+AGG | + | chr1.1:56453842-56453861 | None:intergenic | 45.0% | |
| ACATGGTCTAAGTACATGGG+AGG | + | chr1.1:56451244-56451263 | None:intergenic | 45.0% | |
| AGGCGAGCATATAGTTGCTT+TGG | - | chr1.1:56452388-56452407 | MS.gene52989:CDS | 45.0% | |
| AGTGGTTATTCATCTCGTCC+AGG | - | chr1.1:56451083-56451102 | MS.gene52989:CDS | 45.0% | |
| ATCAGAGTCCCTTGCAACTA+GGG | - | chr1.1:56451043-56451062 | MS.gene52989:CDS | 45.0% | |
| ATGCAACCAAACAGGTGCTA+AGG | + | chr1.1:56453834-56453853 | None:intergenic | 45.0% | |
| CAAAGCGGAAAATGGGATCA+AGG | - | chr1.1:56452914-56452933 | MS.gene52989:CDS | 45.0% | |
| CATCCGCAGTTCCAATCATA+GGG | + | chr1.1:56453672-56453691 | None:intergenic | 45.0% | |
| CTCGGTATACTCAGATTGCA+TGG | - | chr1.1:56452445-56452464 | MS.gene52989:CDS | 45.0% | |
| CTGAATAGTCCCTAGTTGCA+AGG | + | chr1.1:56451055-56451074 | None:intergenic | 45.0% | |
| GAATCCTCTCTACGTGAAAG+TGG | - | chr1.1:56451149-56451168 | MS.gene52989:CDS | 45.0% | |
| GACACTAGCTCAACAAGTTG+AGG | - | chr1.1:56452298-56452317 | MS.gene52989:CDS | 45.0% | |
| GACTATTCAGCATCAGCAAG+TGG | - | chr1.1:56451065-56451084 | MS.gene52989:CDS | 45.0% | |
| GCGGATATAAACTACTAGCG+CGG | - | chr1.1:56452831-56452850 | MS.gene52989:CDS | 45.0% | |
| GGTATACTCAGATTGCATGG+AGG | - | chr1.1:56452448-56452467 | MS.gene52989:CDS | 45.0% | |
| TAGAACTGCTTCCGGAGTTA+TGG | - | chr1.1:56451979-56451998 | MS.gene52989:CDS | 45.0% | |
| TCATCCGCAGTTCCAATCAT+AGG | + | chr1.1:56453673-56453692 | None:intergenic | 45.0% | |
| TCGCGACAGAAGACTAGAAA+TGG | - | chr1.1:56453222-56453241 | MS.gene52989:CDS | 45.0% | |
| TGACAAGGCTGTGTACACAT+TGG | + | chr1.1:56453266-56453285 | None:intergenic | 45.0% | |
| TGTGGAGTGCAATCTAGAAG+CGG | + | chr1.1:56453344-56453363 | None:intergenic | 45.0% | |
| TTAGCACCTGTTTGGTTGCA+TGG | - | chr1.1:56453833-56453852 | MS.gene52989:CDS | 45.0% | |
| ! | ATGTGTACACAGCCTTGTCA+CGG | - | chr1.1:56453266-56453285 | MS.gene52989:CDS | 45.0% |
| ! | CAAGGCTCTAGCTTCCTATA+AGG | + | chr1.1:56451364-56451383 | None:intergenic | 45.0% |
| ! | TCTTTCGCTCTGAGTGTTTG+TGG | - | chr1.1:56452266-56452285 | MS.gene52989:CDS | 45.0% |
| !! | GCGTAGTTTGGTTCCACTTT+TGG | - | chr1.1:56453519-56453538 | MS.gene52989:intron | 45.0% |
| !! | TAGGAAGCTAGAGCCTTGTT+AGG | - | chr1.1:56451366-56451385 | MS.gene52989:intron | 45.0% |
| !! | TTTGGTTCCACTTTTGGAGG+AGG | - | chr1.1:56453525-56453544 | MS.gene52989:intron | 45.0% |
| CATCAGAGTCCCTTGCAACT+AGG | - | chr1.1:56451042-56451061 | MS.gene52989:CDS | 50.0% | |
| CCACTTCGCTCTCAGTTGAA+CGG | - | chr1.1:56452149-56452168 | MS.gene52989:intron | 50.0% | |
| GAAGGTGGGTCGAGTATTAG+CGG | - | chr1.1:56452812-56452831 | MS.gene52989:CDS | 50.0% | |
| GCTCTTTGTTACTGCGGTGA+AGG | - | chr1.1:56452368-56452387 | MS.gene52989:CDS | 50.0% | |
| GCTTCTAGATTGCACTCCAC+AGG | - | chr1.1:56453343-56453362 | MS.gene52989:CDS | 50.0% | |
| TTCAACTGAGAGCGAAGTGG+AGG | + | chr1.1:56452149-56452168 | None:intergenic | 50.0% | |
| TTTGTACAGCGGCTACGAAG+CGG | - | chr1.1:56452118-56452137 | MS.gene52989:intron | 50.0% | |
| !! | AAGTTTTCGGGCCAACCTTC+TGG | + | chr1.1:56451918-56451937 | None:intergenic | 50.0% |
| CCGTTCAACTGAGAGCGAAG+TGG | + | chr1.1:56452152-56452171 | None:intergenic | 55.0% | |
| CCTGCGAGGTTCCATAACTC+CGG | + | chr1.1:56451993-56452012 | None:intergenic | 55.0% | |
| ! | TGTACACAGCCTTGTCACGG+TGG | - | chr1.1:56453269-56453288 | MS.gene52989:CDS | 55.0% |
| !! | GAAGGCACTGAATCGCGTTG+TGG | + | chr1.1:56451522-56451541 | None:intergenic | 55.0% |
| CATCTTGAGGTGAGCCTGCG+AGG | + | chr1.1:56452007-56452026 | None:intergenic | 60.0% | |
| CCGGAGTTATGGAACCTCGC+AGG | - | chr1.1:56451990-56452009 | MS.gene52989:CDS | 60.0% | |
| GGCATCATGCCACCGTGACA+AGG | + | chr1.1:56453281-56453300 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56450987 | 56454308 | 56450987 | ID=MS.gene52989 |
| chr1.1 | mRNA | 56450987 | 56454308 | 56450987 | ID=MS.gene52989.t1;Parent=MS.gene52989 |
| chr1.1 | exon | 56454108 | 56454308 | 56454108 | ID=MS.gene52989.t1.exon1;Parent=MS.gene52989.t1 |
| chr1.1 | CDS | 56454108 | 56454308 | 56454108 | ID=cds.MS.gene52989.t1;Parent=MS.gene52989.t1 |
| chr1.1 | exon | 56453671 | 56453926 | 56453671 | ID=MS.gene52989.t1.exon2;Parent=MS.gene52989.t1 |
| chr1.1 | CDS | 56453671 | 56453926 | 56453671 | ID=cds.MS.gene52989.t1;Parent=MS.gene52989.t1 |
| chr1.1 | exon | 56452223 | 56453430 | 56452223 | ID=MS.gene52989.t1.exon3;Parent=MS.gene52989.t1 |
| chr1.1 | CDS | 56452223 | 56453430 | 56452223 | ID=cds.MS.gene52989.t1;Parent=MS.gene52989.t1 |
| chr1.1 | exon | 56451931 | 56452084 | 56451931 | ID=MS.gene52989.t1.exon4;Parent=MS.gene52989.t1 |
| chr1.1 | CDS | 56451931 | 56452084 | 56451931 | ID=cds.MS.gene52989.t1;Parent=MS.gene52989.t1 |
| chr1.1 | exon | 56450987 | 56451309 | 56450987 | ID=MS.gene52989.t1.exon5;Parent=MS.gene52989.t1 |
| chr1.1 | CDS | 56450987 | 56451309 | 56450987 | ID=cds.MS.gene52989.t1;Parent=MS.gene52989.t1 |
| Gene Sequence |
| Protein sequence |
