AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53335

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53335.t1 MTR_8g019480 99.432 352 2 0 1 352 1 352 0.0 718
MS.gene53335.t1 MTR_3g104810 64.689 354 114 4 1 349 1 348 3.98e-157 444
MS.gene53335.t1 MTR_6g015860 45.075 335 154 6 21 351 5 313 1.10e-93 282
MS.gene53335.t1 MTR_7g015870 46.037 328 149 4 21 345 9 311 1.51e-93 282
MS.gene53335.t1 MTR_7g015870 46.462 325 146 4 27 348 19 318 1.96e-93 281
MS.gene53335.t1 MTR_2g032610 40.426 329 167 6 21 344 17 321 1.22e-81 251
MS.gene53335.t1 MTR_1g097890 26.797 306 166 7 43 348 61 308 6.19e-26 106
MS.gene53335.t1 MTR_8g092080 26.797 306 166 8 43 348 62 309 1.87e-21 94.0
MS.gene53335.t1 MTR_5g073040 27.667 300 165 7 47 338 53 308 4.32e-21 92.8
MS.gene53335.t1 MTR_5g073040 30.928 194 101 6 41 218 135 311 3.02e-12 67.0
MS.gene53335.t1 MTR_4g114320 24.921 317 195 8 34 348 123 398 8.72e-21 92.8
MS.gene53335.t1 MTR_4g012850 23.962 313 201 7 40 350 21 298 4.26e-17 81.3
MS.gene53335.t1 MTR_8g098240 26.101 318 185 10 27 341 314 584 2.20e-16 80.9
MS.gene53335.t1 MTR_1g012030 24.324 296 182 8 49 343 155 409 4.97e-16 79.0
MS.gene53335.t1 MTR_1g012030 25.581 215 120 4 132 346 140 314 8.00e-12 66.2
MS.gene53335.t1 MTR_4g088545 24.290 317 199 11 37 343 14 299 2.17e-15 76.3
MS.gene53335.t1 MTR_7g068340 27.442 215 130 6 35 247 187 377 9.54e-15 75.1
MS.gene53335.t1 MTR_7g109135 23.432 303 189 8 49 343 38 305 1.56e-14 73.9
MS.gene53335.t1 MTR_7g064980 24.828 290 179 7 62 348 65 318 2.02e-14 73.6
MS.gene53335.t1 MTR_2g102010 25.818 275 166 7 48 320 32 270 1.91e-13 70.5
MS.gene53335.t1 MTR_8g027975 30.846 201 124 7 35 221 154 353 3.87e-13 70.1
MS.gene53335.t1 MTR_8g027975 23.929 280 174 6 77 343 99 352 7.88e-12 66.2
MS.gene53335.t1 MTR_4g016730 29.630 189 102 6 35 221 196 355 5.41e-13 69.7
MS.gene53335.t1 MTR_5g055410 30.097 206 112 8 49 239 135 323 7.31e-13 69.3
MS.gene53335.t1 MTR_5g055410 26.159 302 182 9 49 343 37 304 1.17e-11 65.5
MS.gene53335.t1 MTR_8g076760 25.080 311 196 11 47 347 28 311 8.05e-13 68.6
MS.gene53335.t1 MTR_5g009500 29.500 200 126 7 35 221 141 338 3.17e-12 67.4
MS.gene53335.t1 MTR_5g009500 25.180 278 171 6 75 341 84 335 2.95e-11 64.3
MS.gene53335.t1 MTR_1g087840 24.759 311 175 10 49 343 35 302 1.18e-11 65.1
MS.gene53335.t1 MTR_2g436930 23.929 280 168 9 73 339 72 319 1.54e-11 65.1
MS.gene53335.t1 MTR_2g436930 28.191 188 121 7 41 216 134 319 7.54e-11 63.2
MS.gene53335.t1 MTR_2g098070 30.921 152 85 4 74 223 221 354 1.57e-11 65.1
MS.gene53335.t1 MTR_3g107510 26.484 219 113 5 124 342 123 293 1.63e-11 65.5
MS.gene53335.t1 MTR_7g084400 29.319 191 114 5 34 219 309 483 2.51e-11 65.1
MS.gene53335.t1 MTR_4g057850 24.830 294 161 10 44 322 33 281 2.70e-11 64.3
MS.gene53335.t1 MTR_4g119770 29.319 191 113 8 40 214 134 318 3.33e-11 63.9
MS.gene53335.t1 MTR_4g088545 24.336 226 136 6 120 341 1 195 3.53e-11 63.2
MS.gene53335.t1 MTR_2g436930 28.191 188 121 7 41 216 44 229 3.99e-11 62.8
MS.gene53335.t1 MTR_6g034515 30.857 175 114 5 44 218 171 338 7.67e-11 63.2
MS.gene53335.t1 MTR_8g096050 26.977 215 120 4 132 346 228 405 7.71e-11 63.5
MS.gene53335.t1 MTR_7g109135 22.442 303 185 9 49 343 38 298 8.75e-11 62.8
MS.gene53335.t1 MTR_7g109135 22.901 262 167 7 82 343 1 227 9.72e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53335.t1 AT1G72820 72.727 352 84 5 1 349 1 343 4.87e-180 503
MS.gene53335.t1 AT1G72820 72.727 352 84 5 1 349 1 343 4.87e-180 503
MS.gene53335.t1 AT5G26200 62.242 339 107 3 15 349 21 342 5.78e-149 424
MS.gene53335.t1 AT5G15640 47.720 329 144 6 21 345 16 320 9.97e-96 288
MS.gene53335.t1 AT5G15640 47.561 328 143 7 22 345 11 313 6.63e-93 280
MS.gene53335.t1 AT1G34065 26.087 345 189 11 13 349 55 341 1.02e-22 97.8
MS.gene53335.t1 AT1G34065 26.623 308 167 9 43 349 85 334 1.03e-22 97.8
MS.gene53335.t1 AT4G11440 26.667 315 189 8 29 341 326 600 7.43e-22 97.4
MS.gene53335.t1 AT4G11440 26.667 315 189 8 29 341 326 600 7.43e-22 97.4
MS.gene53335.t1 AT4G39460 26.144 306 168 9 43 348 68 315 1.33e-19 88.6
MS.gene53335.t1 AT4G39460 26.144 306 168 9 43 348 68 315 1.33e-19 88.6
MS.gene53335.t1 AT4G39460 26.144 306 168 9 43 348 68 315 1.33e-19 88.6
MS.gene53335.t1 AT2G37890 26.502 283 162 8 68 343 88 331 5.60e-19 87.0
MS.gene53335.t1 AT1G07030 27.273 319 185 7 31 343 38 315 1.23e-18 85.9
MS.gene53335.t1 AT2G30160 27.815 302 176 9 47 343 56 320 3.22e-18 84.7
MS.gene53335.t1 AT2G30160 31.606 193 113 5 37 218 134 318 1.67e-13 70.9
MS.gene53335.t1 AT2G30160 26.066 211 116 5 132 342 43 213 1.99e-12 67.8
MS.gene53335.t1 AT3G53940 26.354 277 160 7 73 343 121 359 8.79e-16 78.2
MS.gene53335.t1 AT3G20240 25.914 301 172 8 34 320 52 315 7.01e-15 75.1
MS.gene53335.t1 AT3G20240 29.444 180 105 6 41 214 169 332 6.27e-13 69.3
MS.gene53335.t1 AT4G32400 23.585 318 200 9 34 349 114 390 8.42e-15 75.5
MS.gene53335.t1 AT1G79900 24.746 295 178 8 48 342 31 281 6.94e-14 71.6
MS.gene53335.t1 AT1G79900 29.050 179 112 3 44 222 121 284 9.99e-12 65.5
MS.gene53335.t1 AT5G66380 24.756 307 195 9 45 343 22 300 2.31e-13 70.5
MS.gene53335.t1 AT5G01340 28.041 296 150 12 44 322 28 277 4.57e-13 69.3
MS.gene53335.t1 AT1G25380 25.243 309 177 9 49 343 37 305 1.04e-12 68.9
MS.gene53335.t1 AT1G25380 25.243 309 177 9 49 343 37 305 1.04e-12 68.9
MS.gene53335.t1 AT3G51870 25.592 211 130 4 35 243 191 376 1.20e-12 68.9
MS.gene53335.t1 AT5G48970 23.782 349 207 10 19 339 12 329 1.35e-12 68.6
MS.gene53335.t1 AT2G47490 25.325 308 176 11 49 343 33 299 2.44e-12 67.4
MS.gene53335.t1 AT5G51050 23.750 320 201 9 25 342 215 493 4.24e-12 67.4
MS.gene53335.t1 AT5G48970 24.549 277 173 7 73 339 8 258 4.61e-12 65.9
MS.gene53335.t1 AT5G48970 27.193 228 120 9 11 214 51 256 3.44e-11 63.5
MS.gene53335.t1 AT3G54110 25.902 305 175 10 49 342 31 295 8.97e-12 65.5
MS.gene53335.t1 AT1G74240 24.611 321 182 13 29 322 27 314 1.30e-11 65.5
MS.gene53335.t1 AT5G46800 27.064 218 121 7 132 341 109 296 1.70e-11 64.7
MS.gene53335.t1 AT5G46800 27.064 218 121 7 132 341 109 296 1.70e-11 64.7
MS.gene53335.t1 AT5G46800 27.064 218 121 7 132 341 109 296 1.70e-11 64.7
MS.gene53335.t1 AT1G14560 21.523 302 193 7 51 341 49 317 2.71e-11 64.3
MS.gene53335.t1 AT4G01100 28.436 211 134 8 35 231 95 302 3.50e-11 63.9
MS.gene53335.t1 AT1G74240 25.168 298 168 12 47 322 2 266 4.98e-11 63.5
MS.gene53335.t1 AT4G01100 28.436 211 134 8 35 231 145 352 6.08e-11 63.5
MS.gene53335.t1 AT4G01100 28.436 211 134 8 35 231 159 366 8.47e-11 63.2

Find 98 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGTTTGTATAGAGGTTT+TGG 0.169259 8.4:-73745257 MS.gene53335:CDS
CTGTTGCACAAAGGATGGTT+TGG 0.306479 8.4:-73745181 MS.gene53335:CDS
CGGGTTTGGTACTTCGTTGA+TGG 0.314901 8.4:-73745573 MS.gene53335:CDS
GGAACTGCTACTGTTGGTTT+TGG 0.344381 8.4:-73745491 MS.gene53335:CDS
GATGCAGACGGTTAGAAGTT+TGG 0.354056 8.4:-73744928 MS.gene53335:CDS
GCAATTGCTAATGCGGTTGC+TGG 0.368970 8.4:-73745446 MS.gene53335:CDS
TGTTGCACAAAGGATGGTTT+GGG 0.377065 8.4:-73745180 MS.gene53335:CDS
AGAGCGTTGTATCGCGGGTT+TGG 0.379134 8.4:-73745587 MS.gene53335:CDS
TCGTCTGTAAGATATGTTAA+TGG 0.389810 8.4:-73745320 MS.gene53335:CDS
CCCGGCTAGGGCGTTGTATA+TGG 0.394032 8.4:-73745543 MS.gene53335:CDS
TAAAACCTCTTGATTCTTTG+CGG 0.394234 8.4:+73744794 None:intergenic
GGTTGGATGGCTTGTTATAG+AGG 0.399503 8.4:-73744894 MS.gene53335:CDS
ATGGCTTGTTATAGAGGATT+GGG 0.407744 8.4:-73744888 MS.gene53335:CDS
AGGATGGTTTGGGGTGGAGT+TGG 0.412562 8.4:-73745170 MS.gene53335:CDS
ATGTTCCAGCTGAAATTGAT+TGG 0.414525 8.4:-73745775 MS.gene53335:CDS
ATAGAGGATTGGGACCTAGA+TGG 0.418086 8.4:-73744878 MS.gene53335:CDS
GGTCCTAGGGGTTTGTATAG+AGG 0.420101 8.4:-73745263 MS.gene53335:CDS
TGCTTTGATTACTATGCCAT+TGG 0.422067 8.4:-73745015 MS.gene53335:CDS
TACCTTGAACCATCAGCCTT+TGG 0.422863 8.4:+73745369 None:intergenic
ACAAGGCTGCAGGTCTTAGA+TGG 0.426779 8.4:-73744981 MS.gene53335:CDS
GATGGCTTGTTATAGAGGAT+TGG 0.434742 8.4:-73744889 MS.gene53335:CDS
TGAGGAAGAGGTAGAGTCAG+AGG 0.443657 8.4:-73745807 MS.gene53335:CDS
GGTTTAGAGCGTTGTATCGC+GGG 0.444190 8.4:-73745592 MS.gene53335:CDS
GACGGTTAGAAGTTTGGTTA+AGG 0.449500 8.4:-73744922 MS.gene53335:CDS
GGTTAAGGAAGGTGGTTGGA+TGG 0.449945 8.4:-73744907 MS.gene53335:CDS
TCGTGAGAACGGATGGTCCT+AGG 0.452664 8.4:-73745277 MS.gene53335:CDS
TTGTAATTCAAGTGATCCTA+AGG 0.453755 8.4:-73745345 MS.gene53335:CDS
GCCATATACAACGCCCTAGC+CGG 0.460196 8.4:+73745542 None:intergenic
AGAAGTTTGGTTAAGGAAGG+TGG 0.466995 8.4:-73744915 MS.gene53335:CDS
ATGCTCCTTCAAATGCAGTA+TGG 0.467579 8.4:-73745217 MS.gene53335:CDS
TTCGTTGATGGGTACGATCC+CGG 0.468966 8.4:-73745561 MS.gene53335:CDS
CTGTTGTTGTGTTGAAAACT+AGG 0.469626 8.4:-73745679 MS.gene53335:CDS
GGGTTTGGTACTTCGTTGAT+GGG 0.476339 8.4:-73745572 MS.gene53335:CDS
GTTAGAAGTTTGGTTAAGGA+AGG 0.488369 8.4:-73744918 MS.gene53335:CDS
GCCCACCATACTGCATTTGA+AGG 0.489267 8.4:+73745212 None:intergenic
CGTGAGAACGGATGGTCCTA+GGG 0.489508 8.4:-73745276 MS.gene53335:CDS
CTTTGGCTCACAACATCAAT+CGG 0.489599 8.4:+73745386 None:intergenic
AAAACTGTTATGGCAGTTCA+GGG 0.494556 8.4:-73745068 MS.gene53335:CDS
CTCCCCTTTAATCAACGAAA+AGG 0.499278 8.4:+73745616 None:intergenic
AGCAGTTCCTACATTACTCT+TGG 0.499952 8.4:+73745505 None:intergenic
GTCTTAGATGGCGATGAGAA+TGG 0.502262 8.4:-73744969 MS.gene53335:CDS
CCATATACAACGCCCTAGCC+GGG 0.504449 8.4:+73745543 None:intergenic
AGCCAAAGGCTGATGGTTCA+AGG 0.509757 8.4:-73745371 MS.gene53335:CDS
TTTCGTTGATTAAAGGGGAG+GGG 0.510089 8.4:-73745613 MS.gene53335:CDS
TAGAGGATTGGGACCTAGAT+GGG 0.510090 8.4:-73744877 MS.gene53335:CDS
TGATGGGTACGATCCCGGCT+AGG 0.513383 8.4:-73745556 MS.gene53335:CDS
AGGAAAATCGTGAGAACGGA+TGG 0.514756 8.4:-73745284 MS.gene53335:CDS
ATTTGCCAATCAATTTCAGC+TGG 0.515337 8.4:+73745770 None:intergenic
TTTGAGTGTGAATGAGGAAG+AGG 0.516208 8.4:-73745819 MS.gene53335:CDS
GGAATCAGTGCAGCAATGGC+AGG 0.517764 8.4:-73745047 MS.gene53335:CDS
ATATTCTGTTGCACAAAGGA+TGG 0.521296 8.4:-73745186 MS.gene53335:CDS
GATGGGTACGATCCCGGCTA+GGG 0.521692 8.4:-73745555 MS.gene53335:CDS
CTTTAGCAGCTCAGCTTGTG+TGG 0.529736 8.4:-73745412 MS.gene53335:CDS
TCCTTCAAATGCAGTATGGT+GGG 0.530664 8.4:-73745213 MS.gene53335:CDS
GTTTGGTTAAGGAAGGTGGT+TGG 0.535300 8.4:-73744911 MS.gene53335:CDS
TACAATCAAGACAAGGCTGC+AGG 0.537518 8.4:-73744991 MS.gene53335:CDS
AATGTAGGAACTGCTACTGT+TGG 0.541302 8.4:-73745497 MS.gene53335:CDS
AACGACATTGAAGCCCATCT+AGG 0.543587 8.4:+73744864 None:intergenic
TATCTTACAGACGAACCCTT+AGG 0.545681 8.4:+73745329 None:intergenic
GAGGTTACCAAGAGTAATGT+AGG 0.546410 8.4:-73745512 MS.gene53335:CDS
ACTTGAGTAACAAGAAAGGT+GGG 0.552159 8.4:-73745142 MS.gene53335:CDS
GGAAGTGACAACAACAATGG+AGG 0.554499 8.4:-73745116 MS.gene53335:CDS
CTTGTCTTGATTGTATCCAA+TGG 0.562754 8.4:+73744999 None:intergenic
CTCCTTCAAATGCAGTATGG+TGG 0.563611 8.4:-73745214 MS.gene53335:CDS
TACTTGAGTAACAAGAAAGG+TGG 0.572354 8.4:-73745143 MS.gene53335:CDS
TTAGCAATTGCAGCAGCCGT+CGG 0.572422 8.4:+73745458 None:intergenic
GGCGATGAGAATGGCCGTCG+TGG 0.574613 8.4:-73744960 MS.gene53335:CDS
TCAGGGAATCAGTGCAGCAA+TGG 0.574833 8.4:-73745051 MS.gene53335:CDS
GGCTGCTGCAATTGCTAATG+CGG 0.580901 8.4:-73745453 MS.gene53335:CDS
AATGGATTTGAGTGTGAATG+AGG 0.583175 8.4:-73745825 MS.gene53335:CDS
GGGTTTAGAGCGTTGTATCG+CGG 0.584544 8.4:-73745593 MS.gene53335:CDS
GTTGTATATGGCAGCGCTTG+AGG 0.586997 8.4:-73745531 MS.gene53335:CDS
GAAGTGACAACAACAATGGA+GGG 0.589871 8.4:-73745115 MS.gene53335:CDS
AGGGGCTAATGTGTTGAGGC+CGG 0.590691 8.4:-73745096 MS.gene53335:CDS
TGTAATTCAAGTGATCCTAA+GGG 0.603205 8.4:-73745344 MS.gene53335:CDS
GTTGCACAAAGGATGGTTTG+GGG 0.609426 8.4:-73745179 MS.gene53335:CDS
CTTCATATTCTGTTGCACAA+AGG 0.611809 8.4:-73745190 MS.gene53335:CDS
CGATTGATGTTGTGAGCCAA+AGG 0.612864 8.4:-73745385 MS.gene53335:CDS
TATTACTTGAGTAACAAGAA+AGG 0.614289 8.4:-73745146 MS.gene53335:CDS
TGTTGTGAGCCAAAGGCTGA+TGG 0.616328 8.4:-73745378 MS.gene53335:CDS
CCCTTTAATCAACGAAAAGG+CGG 0.617823 8.4:+73745619 None:intergenic
GCTTTCCGCAAAGAATCAAG+AGG 0.618949 8.4:-73744799 MS.gene53335:CDS
AAACCTCTATACAAACCCCT+AGG 0.620850 8.4:+73745260 None:intergenic
AGTAACAAGAAAGGTGGGGA+GGG 0.623934 8.4:-73745137 MS.gene53335:CDS
ATCAGTGCAGCAATGGCAGG+AGG 0.625647 8.4:-73745044 MS.gene53335:CDS
GAGGGAAGTGACAACAACAA+TGG 0.626306 8.4:-73745119 MS.gene53335:CDS
GCACAAAGGATGGTTTGGGG+TGG 0.629155 8.4:-73745176 MS.gene53335:CDS
GAGTAACAAGAAAGGTGGGG+AGG 0.639195 8.4:-73745138 MS.gene53335:CDS
CTTGAGTAACAAGAAAGGTG+GGG 0.640700 8.4:-73745141 MS.gene53335:CDS
ATGGAGGGGCTAATGTGTTG+AGG 0.647603 8.4:-73745100 MS.gene53335:CDS
CTAACCGTCTGCATCACTGT+TGG 0.653039 8.4:+73744936 None:intergenic
TGCGGTTGCTGGTTTGACTG+CGG 0.661120 8.4:-73745435 MS.gene53335:CDS
GCATCACTGTTGGTCCACGA+CGG 0.662402 8.4:+73744946 None:intergenic
CATTGGATACAATCAAGACA+AGG 0.683298 8.4:-73744998 MS.gene53335:CDS
GTGAGAACGGATGGTCCTAG+GGG 0.684654 8.4:-73745275 MS.gene53335:CDS
CAGAAAACAAAGCAGCACCG+AGG 0.690959 8.4:+73745723 None:intergenic
TGGACCAACAGTGATGCAGA+CGG 0.713938 8.4:-73744940 MS.gene53335:CDS
AAGTGACAACAACAATGGAG+GGG 0.716540 8.4:-73745114 MS.gene53335:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TATTACTTGAGTAACAAGAA+AGG - chr8.4:73745466-73745485 MS.gene53335:CDS 25.0%
!!! TTAATGGTATTGATGCTTTT+AGG - chr8.4:73745308-73745327 MS.gene53335:CDS 25.0%
TAAAACCTCTTGATTCTTTG+CGG + chr8.4:73745821-73745840 None:intergenic 30.0%
TCGTCTGTAAGATATGTTAA+TGG - chr8.4:73745292-73745311 MS.gene53335:CDS 30.0%
TGTAATTCAAGTGATCCTAA+GGG - chr8.4:73745268-73745287 MS.gene53335:CDS 30.0%
TTGTAATTCAAGTGATCCTA+AGG - chr8.4:73745267-73745286 MS.gene53335:CDS 30.0%
! AAATCCAAGTTTTTCTTCCT+CGG - chr8.4:73744872-73744891 MS.gene53335:CDS 30.0%
!! CAACCTATGAGCTTTTAAAA+CGG - chr8.4:73745791-73745810 MS.gene53335:CDS 30.0%
!! TTTTAGGAAAATCGTGAGAA+CGG - chr8.4:73745324-73745343 MS.gene53335:CDS 30.0%
AAAAACTGTTATGGCAGTTC+AGG - chr8.4:73745543-73745562 MS.gene53335:CDS 35.0%
AAAACTGTTATGGCAGTTCA+GGG - chr8.4:73745544-73745563 MS.gene53335:CDS 35.0%
ACTTGAGTAACAAGAAAGGT+GGG - chr8.4:73745470-73745489 MS.gene53335:CDS 35.0%
ATATTCTGTTGCACAAAGGA+TGG - chr8.4:73745426-73745445 MS.gene53335:CDS 35.0%
ATGTTCCAGCTGAAATTGAT+TGG - chr8.4:73744837-73744856 MS.gene53335:CDS 35.0%
ATTTGCCAATCAATTTCAGC+TGG + chr8.4:73744845-73744864 None:intergenic 35.0%
CATTGGATACAATCAAGACA+AGG - chr8.4:73745614-73745633 MS.gene53335:CDS 35.0%
CTGTTGTTGTGTTGAAAACT+AGG - chr8.4:73744933-73744952 MS.gene53335:CDS 35.0%
CTTCATATTCTGTTGCACAA+AGG - chr8.4:73745422-73745441 MS.gene53335:CDS 35.0%
CTTGTCTTGATTGTATCCAA+TGG + chr8.4:73745616-73745635 None:intergenic 35.0%
GTTAGAAGTTTGGTTAAGGA+AGG - chr8.4:73745694-73745713 MS.gene53335:CDS 35.0%
TACTTGAGTAACAAGAAAGG+TGG - chr8.4:73745469-73745488 MS.gene53335:CDS 35.0%
TGCTTTGATTACTATGCCAT+TGG - chr8.4:73745597-73745616 MS.gene53335:CDS 35.0%
! GCCATAACAGTTTTTGTATC+CGG + chr8.4:73745538-73745557 None:intergenic 35.0%
!! ATGGCTTGTTATAGAGGATT+GGG - chr8.4:73745724-73745743 MS.gene53335:CDS 35.0%
!! CTAGTTTTCAACACAACAAC+AGG + chr8.4:73744935-73744954 None:intergenic 35.0%
!! TTTTCGTTGATTAAAGGGGA+GGG - chr8.4:73744998-73745017 MS.gene53335:CDS 35.0%
!!! AAGCCGTTTTAAAAGCTCAT+AGG + chr8.4:73745797-73745816 None:intergenic 35.0%
!!! GTATAGAGGTTTTGGGATAT+CGG - chr8.4:73745363-73745382 MS.gene53335:CDS 35.0%
AAACCTCTATACAAACCCCT+AGG + chr8.4:73745355-73745374 None:intergenic 40.0%
AAGTGACAACAACAATGGAG+GGG - chr8.4:73745498-73745517 MS.gene53335:CDS 40.0%
AATGTAGGAACTGCTACTGT+TGG - chr8.4:73745115-73745134 MS.gene53335:CDS 40.0%
AGAAGTTTGGTTAAGGAAGG+TGG - chr8.4:73745697-73745716 MS.gene53335:CDS 40.0%
AGCAGTTCCTACATTACTCT+TGG + chr8.4:73745110-73745129 None:intergenic 40.0%
ATGCTCCTTCAAATGCAGTA+TGG - chr8.4:73745395-73745414 MS.gene53335:CDS 40.0%
CCCTTTAATCAACGAAAAGG+CGG + chr8.4:73744996-73745015 None:intergenic 40.0%
CTCCCCTTTAATCAACGAAA+AGG + chr8.4:73744999-73745018 None:intergenic 40.0%
CTTGAGTAACAAGAAAGGTG+GGG - chr8.4:73745471-73745490 MS.gene53335:CDS 40.0%
GAAGTGACAACAACAATGGA+GGG - chr8.4:73745497-73745516 MS.gene53335:CDS 40.0%
GACGGTTAGAAGTTTGGTTA+AGG - chr8.4:73745690-73745709 MS.gene53335:CDS 40.0%
GAGGTTACCAAGAGTAATGT+AGG - chr8.4:73745100-73745119 MS.gene53335:CDS 40.0%
GCCGGATACAAAAACTGTTA+TGG - chr8.4:73745534-73745553 MS.gene53335:CDS 40.0%
TATCTTACAGACGAACCCTT+AGG + chr8.4:73745286-73745305 None:intergenic 40.0%
TCCTTCAAATGCAGTATGGT+GGG - chr8.4:73745399-73745418 MS.gene53335:CDS 40.0%
TGTTGCACAAAGGATGGTTT+GGG - chr8.4:73745432-73745451 MS.gene53335:CDS 40.0%
TTTGAGTGTGAATGAGGAAG+AGG - chr8.4:73744793-73744812 MS.gene53335:CDS 40.0%
! AGGGGTTTGTATAGAGGTTT+TGG - chr8.4:73745355-73745374 MS.gene53335:CDS 40.0%
! CTTTGGCTCACAACATCAAT+CGG + chr8.4:73745229-73745248 None:intergenic 40.0%
! GGGGTTTGTATAGAGGTTTT+GGG - chr8.4:73745356-73745375 MS.gene53335:CDS 40.0%
! TTTCGTTGATTAAAGGGGAG+GGG - chr8.4:73744999-73745018 MS.gene53335:CDS 40.0%
!! ACCGCCTTTTCGTTGATTAA+AGG - chr8.4:73744992-73745011 MS.gene53335:CDS 40.0%
!! CCGCCTTTTCGTTGATTAAA+GGG - chr8.4:73744993-73745012 MS.gene53335:CDS 40.0%
!! CGCCTTTTCGTTGATTAAAG+GGG - chr8.4:73744994-73745013 MS.gene53335:CDS 40.0%
!! CTTTTCGTTGATTAAAGGGG+AGG - chr8.4:73744997-73745016 MS.gene53335:CDS 40.0%
!! GATGGCTTGTTATAGAGGAT+TGG - chr8.4:73745723-73745742 MS.gene53335:CDS 40.0%
AACGACATTGAAGCCCATCT+AGG + chr8.4:73745751-73745770 None:intergenic 45.0%
AGGAAAATCGTGAGAACGGA+TGG - chr8.4:73745328-73745347 MS.gene53335:CDS 45.0%
AGTAACAAGAAAGGTGGGGA+GGG - chr8.4:73745475-73745494 MS.gene53335:CDS 45.0%
ATAGAGGATTGGGACCTAGA+TGG - chr8.4:73745734-73745753 MS.gene53335:CDS 45.0%
CGATTGATGTTGTGAGCCAA+AGG - chr8.4:73745227-73745246 MS.gene53335:CDS 45.0%
CTCCTTCAAATGCAGTATGG+TGG - chr8.4:73745398-73745417 MS.gene53335:CDS 45.0%
CTGTTGCACAAAGGATGGTT+TGG - chr8.4:73745431-73745450 MS.gene53335:CDS 45.0%
GAGGGAAGTGACAACAACAA+TGG - chr8.4:73745493-73745512 MS.gene53335:CDS 45.0%
GATGCAGACGGTTAGAAGTT+TGG - chr8.4:73745684-73745703 MS.gene53335:CDS 45.0%
GCTTTCCGCAAAGAATCAAG+AGG - chr8.4:73745813-73745832 MS.gene53335:CDS 45.0%
GGAAGTGACAACAACAATGG+AGG - chr8.4:73745496-73745515 MS.gene53335:CDS 45.0%
GTCTTAGATGGCGATGAGAA+TGG - chr8.4:73745643-73745662 MS.gene53335:CDS 45.0%
GTTGCACAAAGGATGGTTTG+GGG - chr8.4:73745433-73745452 MS.gene53335:CDS 45.0%
GTTTGGTTAAGGAAGGTGGT+TGG - chr8.4:73745701-73745720 MS.gene53335:CDS 45.0%
TACAATCAAGACAAGGCTGC+AGG - chr8.4:73745621-73745640 MS.gene53335:CDS 45.0%
TACCTTGAACCATCAGCCTT+TGG + chr8.4:73745246-73745265 None:intergenic 45.0%
TAGAGGATTGGGACCTAGAT+GGG - chr8.4:73745735-73745754 MS.gene53335:CDS 45.0%
! AGCACCGAGGAAGAAAAACT+TGG + chr8.4:73744879-73744898 None:intergenic 45.0%
! GGGTTTGGTACTTCGTTGAT+GGG - chr8.4:73745040-73745059 MS.gene53335:CDS 45.0%
!! GGTTGGATGGCTTGTTATAG+AGG - chr8.4:73745718-73745737 MS.gene53335:CDS 45.0%
!!! GGAACTGCTACTGTTGGTTT+TGG - chr8.4:73745121-73745140 MS.gene53335:CDS 45.0%
!!! TTTTGGTCTTGCTGAACCGA+CGG - chr8.4:73745138-73745157 MS.gene53335:CDS 45.0%
ACAAGGCTGCAGGTCTTAGA+TGG - chr8.4:73745631-73745650 MS.gene53335:CDS 50.0%
AGCCAAAGGCTGATGGTTCA+AGG - chr8.4:73745241-73745260 MS.gene53335:CDS 50.0%
ATGGAGGGGCTAATGTGTTG+AGG - chr8.4:73745512-73745531 MS.gene53335:CDS 50.0%
CAGAAAACAAAGCAGCACCG+AGG + chr8.4:73744892-73744911 None:intergenic 50.0%
CTAACCGTCTGCATCACTGT+TGG + chr8.4:73745679-73745698 None:intergenic 50.0%
CTTTAGCAGCTCAGCTTGTG+TGG - chr8.4:73745200-73745219 MS.gene53335:CDS 50.0%
GAGTAACAAGAAAGGTGGGG+AGG - chr8.4:73745474-73745493 MS.gene53335:CDS 50.0%
GCAATTGCTAATGCGGTTGC+TGG - chr8.4:73745166-73745185 MS.gene53335:CDS 50.0%
GCCCACCATACTGCATTTGA+AGG + chr8.4:73745403-73745422 None:intergenic 50.0%
GGCTGCTGCAATTGCTAATG+CGG - chr8.4:73745159-73745178 MS.gene53335:CDS 50.0%
GGTCCTAGGGGTTTGTATAG+AGG - chr8.4:73745349-73745368 MS.gene53335:CDS 50.0%
GGTTAAGGAAGGTGGTTGGA+TGG - chr8.4:73745705-73745724 MS.gene53335:CDS 50.0%
GTTGTATATGGCAGCGCTTG+AGG - chr8.4:73745081-73745100 MS.gene53335:CDS 50.0%
TCAGGGAATCAGTGCAGCAA+TGG - chr8.4:73745561-73745580 MS.gene53335:CDS 50.0%
TGAGGAAGAGGTAGAGTCAG+AGG - chr8.4:73744805-73744824 MS.gene53335:CDS 50.0%
TGGACCAACAGTGATGCAGA+CGG - chr8.4:73745672-73745691 MS.gene53335:CDS 50.0%
TGTTGTGAGCCAAAGGCTGA+TGG - chr8.4:73745234-73745253 MS.gene53335:CDS 50.0%
TTAGCAATTGCAGCAGCCGT+CGG + chr8.4:73745157-73745176 None:intergenic 50.0%
! CGGGTTTGGTACTTCGTTGA+TGG - chr8.4:73745039-73745058 MS.gene53335:CDS 50.0%
! TTCGTTGATGGGTACGATCC+CGG - chr8.4:73745051-73745070 MS.gene53335:CDS 50.0%
!! GGGTTTAGAGCGTTGTATCG+CGG - chr8.4:73745019-73745038 MS.gene53335:CDS 50.0%
!! GGTTTAGAGCGTTGTATCGC+GGG - chr8.4:73745020-73745039 MS.gene53335:CDS 50.0%
!!! CTCGGTGCTGCTTTGTTTTC+TGG - chr8.4:73744890-73744909 MS.gene53335:CDS 50.0%
AGGGGCTAATGTGTTGAGGC+CGG - chr8.4:73745516-73745535 MS.gene53335:CDS 55.0%
ATCAGTGCAGCAATGGCAGG+AGG - chr8.4:73745568-73745587 MS.gene53335:CDS 55.0%
CCATATACAACGCCCTAGCC+GGG + chr8.4:73745072-73745091 None:intergenic 55.0%
CGTGAGAACGGATGGTCCTA+GGG - chr8.4:73745336-73745355 MS.gene53335:CDS 55.0%
GCATCACTGTTGGTCCACGA+CGG + chr8.4:73745669-73745688 None:intergenic 55.0%
GCCATATACAACGCCCTAGC+CGG + chr8.4:73745073-73745092 None:intergenic 55.0%
GGAATCAGTGCAGCAATGGC+AGG - chr8.4:73745565-73745584 MS.gene53335:CDS 55.0%
GTGAGAACGGATGGTCCTAG+GGG - chr8.4:73745337-73745356 MS.gene53335:CDS 55.0%
TCGTGAGAACGGATGGTCCT+AGG - chr8.4:73745335-73745354 MS.gene53335:CDS 55.0%
! AGGATGGTTTGGGGTGGAGT+TGG - chr8.4:73745442-73745461 MS.gene53335:CDS 55.0%
! GCACAAAGGATGGTTTGGGG+TGG - chr8.4:73745436-73745455 MS.gene53335:CDS 55.0%
!! AGAGCGTTGTATCGCGGGTT+TGG - chr8.4:73745025-73745044 MS.gene53335:CDS 55.0%
!! TGCGGTTGCTGGTTTGACTG+CGG - chr8.4:73745177-73745196 MS.gene53335:CDS 55.0%
GATGGGTACGATCCCGGCTA+GGG - chr8.4:73745057-73745076 MS.gene53335:CDS 60.0%
! TGATGGGTACGATCCCGGCT+AGG - chr8.4:73745056-73745075 MS.gene53335:CDS 60.0%
!! CCCGGCTAGGGCGTTGTATA+TGG - chr8.4:73745069-73745088 MS.gene53335:CDS 60.0%
GGCGATGAGAATGGCCGTCG+TGG - chr8.4:73745652-73745671 MS.gene53335:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 73744788 73745846 73744788 ID=MS.gene53335
chr8.4 mRNA 73744788 73745846 73744788 ID=MS.gene53335.t1;Parent=MS.gene53335
chr8.4 exon 73744788 73745846 73744788 ID=MS.gene53335.t1.exon1;Parent=MS.gene53335.t1
chr8.4 CDS 73744788 73745846 73744788 ID=cds.MS.gene53335.t1;Parent=MS.gene53335.t1
Gene Sequence

>MS.gene53335

ATGGATTTGAGTGTGAATGAGGAAGAGGTAGAGTCAGAGGAAGAGATTCATGTTCCAGCTGAAATTGATTGGCAAATGCTTGATAAATCCAAGTTTTTCTTCCTCGGTGCTGCTTTGTTTTCTGGTGTTTCAGCAACATTGTATCCTGTTGTTGTGTTGAAAACTAGGCAGCAAGTTGCTCAGTCACAAGTTTCTTGTATTAAGACCGCCTTTTCGTTGATTAAAGGGGAGGGGTTTAGAGCGTTGTATCGCGGGTTTGGTACTTCGTTGATGGGTACGATCCCGGCTAGGGCGTTGTATATGGCAGCGCTTGAGGTTACCAAGAGTAATGTAGGAACTGCTACTGTTGGTTTTGGTCTTGCTGAACCGACGGCTGCTGCAATTGCTAATGCGGTTGCTGGTTTGACTGCGGCTTTAGCAGCTCAGCTTGTGTGGACGCCGATTGATGTTGTGAGCCAAAGGCTGATGGTTCAAGGTAGTTGTAATTCAAGTGATCCTAAGGGTTCGTCTGTAAGATATGTTAATGGTATTGATGCTTTTAGGAAAATCGTGAGAACGGATGGTCCTAGGGGTTTGTATAGAGGTTTTGGGATATCGGTTTTGACGTATGCTCCTTCAAATGCAGTATGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGATATTACTTGAGTAACAAGAAAGGTGGGGAGGGAAGTGACAACAACAATGGAGGGGCTAATGTGTTGAGGCCGGATACAAAAACTGTTATGGCAGTTCAGGGAATCAGTGCAGCAATGGCAGGAGGCATGTCTGCTTTGATTACTATGCCATTGGATACAATCAAGACAAGGCTGCAGGTCTTAGATGGCGATGAGAATGGCCGTCGTGGACCAACAGTGATGCAGACGGTTAGAAGTTTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCGTTCTCTGCAACAACAATGATCACAACCTATGAGCTTTTAAAACGGCTTTCCGCAAAGAATCAAGAGGTTTTAACATGA
Protein sequence

>MS.gene53335.t1

MDLSVNEEEVESEEEIHVPAEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCIKTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVGFGLAEPTAAAIANAVAGLTAALAAQLVWTPIDVVSQRLMVQGSCNSSDPKGSSVRYVNGIDAFRKIVRTDGPRGLYRGFGISVLTYAPSNAVWWASYSVAQRMVWGGVGYYLSNKKGGEGSDNNNGGANVLRPDTKTVMAVQGISAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSFSATTMITTYELLKRLSAKNQEVLT