Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53460.t1 | XP_024629520.1 | 91.4 | 266 | 23 | 0 | 1 | 266 | 1 | 266 | 4.70E-118 | 434.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53460.t1 | A0A2K3M0R9 | 69.5 | 266 | 73 | 2 | 2 | 266 | 71 | 329 | 1.7e-85 | 325.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene53460 | 0.811866 | 5.65E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene53460 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene53460 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene53460 | 0.802846 | 4.62E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene53460 | 0.806016 | 1.01E-49 | -1.69E-46 |
| MS.gene052685 | MS.gene53460 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene53460 | 0.82455 | 7.60E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene53460 | 0.831078 | 2.05E-55 | -1.69E-46 |
| MS.gene060412 | MS.gene53460 | 0.805428 | 1.34E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene53460 | 0.818517 | 1.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53460.t1 | MTR_4g078510 | 92.517 | 147 | 11 | 0 | 107 | 253 | 36 | 182 | 5.14e-86 | 256 |
| MS.gene53460.t1 | MTR_2g044850 | 86.747 | 83 | 11 | 0 | 184 | 266 | 1 | 83 | 5.50e-36 | 123 |
| MS.gene53460.t1 | MTR_8g467480 | 86.747 | 83 | 11 | 0 | 184 | 266 | 1 | 83 | 6.46e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | 5.3:+22980104 | MS.gene53460:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | 5.3:-22980346 | None:intergenic |
| GGAATCAATTAATACATTAT+TGG | 0.196503 | 5.3:+22978827 | MS.gene53460:CDS |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | 5.3:+22979998 | MS.gene53460:CDS |
| TACTGCTGGTTCTATATCTA+TGG | 0.241436 | 5.3:+22978927 | MS.gene53460:CDS |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | 5.3:+22979915 | MS.gene53460:CDS |
| GAATCAATTAATACATTATT+GGG | 0.289750 | 5.3:+22978828 | MS.gene53460:CDS |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | 5.3:+22980045 | MS.gene53460:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | 5.3:+22980136 | MS.gene53460:CDS |
| TGTATTAATTGATTCCATAT+TGG | 0.323717 | 5.3:-22978820 | None:intergenic |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | 5.3:+22980054 | MS.gene53460:CDS |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | 5.3:-22980327 | None:intergenic |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | 5.3:-22980312 | None:intergenic |
| GATGTACTTTGGCCTGTATT+CGG | 0.382125 | 5.3:-22978791 | None:intergenic |
| AGTACATCTCTGAGCCAATA+TGG | 0.383331 | 5.3:+22978806 | MS.gene53460:CDS |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | 5.3:+22980081 | MS.gene53460:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | 5.3:-22980291 | None:intergenic |
| AAAATGTAGGAGAATGAAAC+AGG | 0.438908 | 5.3:+22979041 | MS.gene53460:intron |
| ACATTCGAAAGGATAAGAAA+TGG | 0.457529 | 5.3:+22979102 | MS.gene53460:CDS |
| ATGCAAATAATTCCGAATAC+AGG | 0.477271 | 5.3:+22978779 | MS.gene53460:CDS |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | 5.3:-22980000 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | 5.3:+22980146 | MS.gene53460:CDS |
| TATAGAACCAGCAGTATGAA+TGG | 0.497172 | 5.3:-22978920 | None:intergenic |
| ATTGGCTCAGAGATGTACTT+TGG | 0.497630 | 5.3:-22978802 | None:intergenic |
| GCAAATACCTCCTCCACTGC+AGG | 0.498509 | 5.3:-22979071 | None:intergenic |
| TTCTATATCTATGGGTGAGA+AGG | 0.502165 | 5.3:+22978936 | MS.gene53460:CDS |
| ATTTCTTATCCTTTCGAATG+TGG | 0.515569 | 5.3:-22979100 | None:intergenic |
| GGTAGCTCCATTCATACTGC+TGG | 0.517845 | 5.3:+22978913 | MS.gene53460:CDS |
| AGCCACGCCTGCAGTGGAGG+AGG | 0.522287 | 5.3:+22979064 | MS.gene53460:CDS |
| AGGAGCCACGCCTGCAGTGG+AGG | 0.522444 | 5.3:+22979061 | MS.gene53460:CDS |
| CATTCGAAAGGATAAGAAAT+GGG | 0.523660 | 5.3:+22979103 | MS.gene53460:CDS |
| TACCTCCTCCACTGCAGGCG+TGG | 0.527940 | 5.3:-22979066 | None:intergenic |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | 5.3:-22980282 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | 5.3:-22979987 | None:intergenic |
| AACAGGAGCCACGCCTGCAG+TGG | 0.538426 | 5.3:+22979058 | MS.gene53460:CDS |
| TGCTCTTTGCCACATTCGAA+AGG | 0.544773 | 5.3:+22979091 | MS.gene53460:CDS |
| GCAAATCGTGCTTCAACTCA+AGG | 0.546016 | 5.3:+22978892 | MS.gene53460:CDS |
| ACTGCTGGTTCTATATCTAT+GGG | 0.548230 | 5.3:+22978928 | MS.gene53460:CDS |
| GGGTGAGAAGGGACGTAGGA+TGG | 0.568413 | 5.3:+22978948 | MS.gene53460:CDS |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | 5.3:+22979942 | MS.gene53460:CDS |
| TCTATATCTATGGGTGAGAA+GGG | 0.583739 | 5.3:+22978937 | MS.gene53460:CDS |
| GAGGTATGATGTGGCAAGAG+AGG | 0.586967 | 5.3:+22978749 | None:intergenic |
| ATGTCTCAAAATCAAGAGGA+AGG | 0.589667 | 5.3:+22979946 | MS.gene53460:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | 5.3:+22980002 | MS.gene53460:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | 5.3:-22980288 | None:intergenic |
| CTAGATTCAGAGGTATGATG+TGG | 0.651801 | 5.3:+22978740 | None:intergenic |
| CTATGGGTGAGAAGGGACGT+AGG | 0.656674 | 5.3:+22978944 | MS.gene53460:CDS |
| TCTCAAAATCAAGAGGAAGG+AGG | 0.661677 | 5.3:+22979949 | MS.gene53460:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | 5.3:+22980018 | MS.gene53460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAACCTTATCA+AGG | - | chr5.3:22979725-22979744 | None:intergenic | 15.0% |
| !! | AGTTATGATAATATTGATAT+GGG | + | chr5.3:22979191-22979210 | MS.gene53460:intron | 15.0% |
| !! | GAATCAATTAATACATTATT+GGG | + | chr5.3:22978828-22978847 | MS.gene53460:CDS | 15.0% |
| !! | TAGTTATGATAATATTGATA+TGG | + | chr5.3:22979190-22979209 | MS.gene53460:intron | 15.0% |
| !!! | AAATTTTAAGAATTTATCAG+TGG | + | chr5.3:22978861-22978880 | MS.gene53460:CDS | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | + | chr5.3:22979844-22979863 | MS.gene53460:intron | 15.0% |
| !!! | TAAGGTTTTTTTTTATTAAG+TGG | + | chr5.3:22979728-22979747 | MS.gene53460:intron | 15.0% |
| !!! | TTTTTAATAATTAGATTGCT+AGG | + | chr5.3:22979256-22979275 | MS.gene53460:intron | 15.0% |
| !! | GGAATCAATTAATACATTAT+TGG | + | chr5.3:22978827-22978846 | MS.gene53460:CDS | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | - | chr5.3:22979825-22979844 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | + | chr5.3:22979883-22979902 | MS.gene53460:intron | 20.0% |
| !!! | AAATTTTCTCATTGAAGTTA+TGG | + | chr5.3:22979016-22979035 | MS.gene53460:intron | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | + | chr5.3:22980116-22980135 | MS.gene53460:CDS | 20.0% |
| !!! | TGTATTAATTGATTCCATAT+TGG | - | chr5.3:22978823-22978842 | None:intergenic | 20.0% |
| !!! | TTAATTTGTGAACAACATAT+TGG | + | chr5.3:22978993-22979012 | MS.gene53460:intron | 20.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | + | chr5.3:22980045-22980064 | MS.gene53460:CDS | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | + | chr5.3:22979882-22979901 | MS.gene53460:intron | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | + | chr5.3:22980039-22980058 | MS.gene53460:CDS | 25.0% |
| ! | TAATAATTAGATTGCTAGGT+GGG | + | chr5.3:22979260-22979279 | MS.gene53460:intron | 25.0% |
| ! | TATGATAATATTGATATGGG+AGG | + | chr5.3:22979194-22979213 | MS.gene53460:intron | 25.0% |
| ! | TGAAGTTATGGAAAAAATGT+AGG | + | chr5.3:22979028-22979047 | MS.gene53460:intron | 25.0% |
| ! | TTAATAATTAGATTGCTAGG+TGG | + | chr5.3:22979259-22979278 | MS.gene53460:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | + | chr5.3:22980104-22980123 | MS.gene53460:CDS | 25.0% |
| !! | TGATTTGGAAGATTAGAAAT+GGG | + | chr5.3:22979229-22979248 | MS.gene53460:intron | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | - | chr5.3:22980036-22980055 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | - | chr5.3:22980037-22980056 | None:intergenic | 25.0% |
| AAAATGTAGGAGAATGAAAC+AGG | + | chr5.3:22979041-22979060 | MS.gene53460:intron | 30.0% | |
| AACCTTATCAAGGAAAACAA+AGG | - | chr5.3:22979715-22979734 | None:intergenic | 30.0% | |
| AATGCTTCGAAGTATACTAT+TGG | + | chr5.3:22980081-22980100 | MS.gene53460:CDS | 30.0% | |
| ACATTCGAAAGGATAAGAAA+TGG | + | chr5.3:22979102-22979121 | MS.gene53460:CDS | 30.0% | |
| ACCTTATCAAGGAAAACAAA+GGG | - | chr5.3:22979714-22979733 | None:intergenic | 30.0% | |
| ATCATCATTGTTTGCATTAG+AGG | - | chr5.3:22980349-22980368 | None:intergenic | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | + | chr5.3:22979942-22979961 | MS.gene53460:CDS | 30.0% | |
| ATGCAAATAATTCCGAATAC+AGG | + | chr5.3:22978779-22978798 | MS.gene53460:CDS | 30.0% | |
| ATTTCTTATCCTTTCGAATG+TGG | - | chr5.3:22979103-22979122 | None:intergenic | 30.0% | |
| CATTCGAAAGGATAAGAAAT+GGG | + | chr5.3:22979103-22979122 | MS.gene53460:CDS | 30.0% | |
| CCAAGAGCAAAAACAAAAAT+TGG | + | chr5.3:22980191-22980210 | MS.gene53460:CDS | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | + | chr5.3:22980146-22980165 | MS.gene53460:CDS | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | + | chr5.3:22980054-22980073 | MS.gene53460:CDS | 30.0% |
| ! | GTGATTTGGAAGATTAGAAA+TGG | + | chr5.3:22979228-22979247 | MS.gene53460:intron | 30.0% |
| ! | TCATTTGGTTCATCTTGAAT+AGG | - | chr5.3:22980315-22980334 | None:intergenic | 30.0% |
| !! | GTTTTTACTGTTTTTCTGCA+GGG | + | chr5.3:22979488-22979507 | MS.gene53460:intron | 30.0% |
| !! | TTCTTTGGGAGTTTTTCTTT+GGG | + | chr5.3:22979668-22979687 | MS.gene53460:intron | 30.0% |
| !! | TTTCTTTGGGAGTTTTTCTT+TGG | + | chr5.3:22979667-22979686 | MS.gene53460:intron | 30.0% |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | - | chr5.3:22980194-22980213 | None:intergenic | 30.0% |
| AAACTCCCAAAGAAACCAAA+CGG | - | chr5.3:22979662-22979681 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | + | chr5.3:22980002-22980021 | MS.gene53460:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | - | chr5.3:22979990-22980009 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | + | chr5.3:22979946-22979965 | MS.gene53460:CDS | 35.0% | |
| CCTTATCAAGGAAAACAAAG+GGG | - | chr5.3:22979713-22979732 | None:intergenic | 35.0% | |
| TAACACCAACCAAAAAACCA+AGG | - | chr5.3:22979567-22979586 | None:intergenic | 35.0% | |
| TATAGAACCAGCAGTATGAA+TGG | - | chr5.3:22978923-22978942 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | - | chr5.3:22979819-22979838 | None:intergenic | 35.0% | |
| TCTATATCTATGGGTGAGAA+GGG | + | chr5.3:22978937-22978956 | MS.gene53460:CDS | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | + | chr5.3:22980136-22980155 | MS.gene53460:CDS | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | - | chr5.3:22980003-22980022 | None:intergenic | 35.0% | |
| TTCTATATCTATGGGTGAGA+AGG | + | chr5.3:22978936-22978955 | MS.gene53460:CDS | 35.0% | |
| !! | ACTGCTGGTTCTATATCTAT+GGG | + | chr5.3:22978928-22978947 | MS.gene53460:CDS | 35.0% |
| !! | GGTTTTTACTGTTTTTCTGC+AGG | + | chr5.3:22979487-22979506 | MS.gene53460:intron | 35.0% |
| !! | TACTGCTGGTTCTATATCTA+TGG | + | chr5.3:22978927-22978946 | MS.gene53460:CDS | 35.0% |
| AGGTAGCAATTTGGGTGATT+TGG | + | chr5.3:22979214-22979233 | MS.gene53460:intron | 40.0% | |
| AGTACATCTCTGAGCCAATA+TGG | + | chr5.3:22978806-22978825 | MS.gene53460:CDS | 40.0% | |
| CACTCGTAGTACATACAAGT+CGG | - | chr5.3:22979348-22979367 | None:intergenic | 40.0% | |
| GATATGGGAGGTAGCAATTT+GGG | + | chr5.3:22979206-22979225 | MS.gene53460:intron | 40.0% | |
| GATGTACTTTGGCCTGTATT+CGG | - | chr5.3:22978794-22978813 | None:intergenic | 40.0% | |
| GGAATGCTTGAATAGATGAC+TGG | + | chr5.3:22979383-22979402 | MS.gene53460:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | + | chr5.3:22980027-22980046 | MS.gene53460:CDS | 40.0% | |
| GTCATCTATTCAAGCATTCC+CGG | - | chr5.3:22979383-22979402 | None:intergenic | 40.0% | |
| TCATCTATTCAAGCATTCCC+GGG | - | chr5.3:22979382-22979401 | None:intergenic | 40.0% | |
| TCTCAAAATCAAGAGGAAGG+AGG | + | chr5.3:22979949-22979968 | MS.gene53460:CDS | 40.0% | |
| TGATATGGGAGGTAGCAATT+TGG | + | chr5.3:22979205-22979224 | MS.gene53460:intron | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | + | chr5.3:22979998-22980017 | MS.gene53460:CDS | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | - | chr5.3:22979810-22979829 | None:intergenic | 40.0% |
| ! | ATTGGCTCAGAGATGTACTT+TGG | - | chr5.3:22978805-22978824 | None:intergenic | 40.0% |
| ! | CTTAGCCGTTTGGTTTCTTT+GGG | + | chr5.3:22979654-22979673 | MS.gene53460:intron | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | + | chr5.3:22979915-22979934 | MS.gene53460:CDS | 40.0% |
| ! | TTAGTGTCTGTGTTGTTAGC+AGG | + | chr5.3:22979617-22979636 | MS.gene53460:intron | 40.0% |
| ! | TTTTTCTGCAGGGACTGATT+TGG | + | chr5.3:22979498-22979517 | MS.gene53460:intron | 40.0% |
| !!! | CCCCTTTGTTTTCCTTGATA+AGG | + | chr5.3:22979710-22979729 | MS.gene53460:intron | 40.0% |
| !!! | GGTTTTTTGGTTGGTGTTAG+TGG | + | chr5.3:22979568-22979587 | MS.gene53460:intron | 40.0% |
| !!! | TTTGTGCAGCCTTGGTTTTT+TGG | + | chr5.3:22979555-22979574 | MS.gene53460:intron | 40.0% |
| AGGAGGTAAAGGTTATGTCG+TGG | + | chr5.3:22979295-22979314 | MS.gene53460:intron | 45.0% | |
| AGGTAAAGGTTATGTCGTGG+AGG | + | chr5.3:22979298-22979317 | MS.gene53460:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | - | chr5.3:22980285-22980304 | None:intergenic | 45.0% | |
| CATCTATTCAAGCATTCCCG+GGG | - | chr5.3:22979381-22979400 | None:intergenic | 45.0% | |
| CCAAACACAGTTACCTGTGA+TGG | - | chr5.3:22979757-22979776 | None:intergenic | 45.0% | |
| CCATCACAGGTAACTGTGTT+TGG | + | chr5.3:22979754-22979773 | MS.gene53460:intron | 45.0% | |
| CGACTTGTATGTACTACGAG+TGG | + | chr5.3:22979346-22979365 | MS.gene53460:intron | 45.0% | |
| CTGCTTCTGTAGCTTGGTTA+GGG | + | chr5.3:22979460-22979479 | MS.gene53460:intron | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | - | chr5.3:22980330-22980349 | None:intergenic | 45.0% | |
| GATTGCTAGGTGGGATGATT+TGG | + | chr5.3:22979269-22979288 | MS.gene53460:intron | 45.0% | |
| GCAAATCGTGCTTCAACTCA+AGG | + | chr5.3:22978892-22978911 | MS.gene53460:CDS | 45.0% | |
| GTATGTACTACGAGTGGTGT+TGG | + | chr5.3:22979352-22979371 | MS.gene53460:intron | 45.0% | |
| TAAAGGTTATGTCGTGGAGG+TGG | + | chr5.3:22979301-22979320 | MS.gene53460:intron | 45.0% | |
| TATTAAGTGGCTGCCATCAC+AGG | + | chr5.3:22979741-22979760 | MS.gene53460:intron | 45.0% | |
| TGCTCTTTGCCACATTCGAA+AGG | + | chr5.3:22979091-22979110 | MS.gene53460:CDS | 45.0% | |
| ! | GCTTAGCCGTTTGGTTTCTT+TGG | + | chr5.3:22979653-22979672 | MS.gene53460:intron | 45.0% |
| ! | GTTTTCCTGCTTCTGTAGCT+TGG | + | chr5.3:22979454-22979473 | MS.gene53460:intron | 45.0% |
| ! | TGGATTTCAGGCTTCAGGTT+TGG | + | chr5.3:22979588-22979607 | MS.gene53460:intron | 45.0% |
| !! | GGTTGGTGTTAGTGGATTTC+AGG | + | chr5.3:22979576-22979595 | MS.gene53460:intron | 45.0% |
| !! | GTTAGTGGATTTCAGGCTTC+AGG | + | chr5.3:22979583-22979602 | MS.gene53460:intron | 45.0% |
| !! | TGATTTGGTGGAGGAGGTAA+AGG | + | chr5.3:22979284-22979303 | MS.gene53460:intron | 45.0% |
| !!! | GGCTTTTTTGTTTTCCCTGC+TGG | + | chr5.3:22979404-22979423 | MS.gene53460:intron | 45.0% |
| !!! | TGCAGCCTTGGTTTTTTGGT+TGG | + | chr5.3:22979559-22979578 | MS.gene53460:intron | 45.0% |
| !!! | TGTGGCGCTGCTGTTTTTAT+TGG | + | chr5.3:22979427-22979446 | MS.gene53460:intron | 45.0% |
| !!! | TTTTGTTTTCCCTGCTGGTG+TGG | + | chr5.3:22979409-22979428 | MS.gene53460:intron | 45.0% |
| !!! | TAAATTCTTAAAATTTTTAT+CGG | - | chr5.3:22978857-22978876 | None:intergenic | 5.0% |
| ATGTCGTGGAGGTGGTTGTT+AGG | + | chr5.3:22979309-22979328 | MS.gene53460:intron | 50.0% | |
| CCTAACCAAGCTACAGAAGC+AGG | - | chr5.3:22979462-22979481 | None:intergenic | 50.0% | |
| CCTGCTTCTGTAGCTTGGTT+AGG | + | chr5.3:22979459-22979478 | MS.gene53460:intron | 50.0% | |
| GGTAGCTCCATTCATACTGC+TGG | + | chr5.3:22978913-22978932 | MS.gene53460:CDS | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | - | chr5.3:22980291-22980310 | None:intergenic | 50.0% | |
| TGGAAGGAAGTAGCTCCCAA+AGG | + | chr5.3:22980018-22980037 | MS.gene53460:CDS | 50.0% | |
| TGTTGTTAGCAGGTGGTGTG+TGG | + | chr5.3:22979627-22979646 | MS.gene53460:intron | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | - | chr5.3:22980294-22980313 | None:intergenic | 50.0% |
| ! | GTGTCTGTGTTGTTAGCAGG+TGG | + | chr5.3:22979620-22979639 | MS.gene53460:intron | 50.0% |
| ! | TGCTAGGTGGGATGATTTGG+TGG | + | chr5.3:22979272-22979291 | MS.gene53460:intron | 50.0% |
| !! | TAGGTGGGATGATTTGGTGG+AGG | + | chr5.3:22979275-22979294 | MS.gene53460:intron | 50.0% |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | - | chr5.3:22979805-22979824 | None:intergenic | 50.0% |
| !!! | TTGGCCAGCTGCTGGTTTTT+GGG | + | chr5.3:22979517-22979536 | MS.gene53460:intron | 50.0% |
| !!! | TTTGGCCAGCTGCTGGTTTT+TGG | + | chr5.3:22979516-22979535 | MS.gene53460:intron | 50.0% |
| CACTGGTGTTTGTGCAGCCT+TGG | + | chr5.3:22979547-22979566 | MS.gene53460:intron | 55.0% | |
| CTATGGGTGAGAAGGGACGT+AGG | + | chr5.3:22978944-22978963 | MS.gene53460:CDS | 55.0% | |
| CTGTAGCTTGGTTAGGGAGC+TGG | + | chr5.3:22979466-22979485 | MS.gene53460:intron | 55.0% | |
| GCAAATACCTCCTCCACTGC+AGG | - | chr5.3:22979074-22979093 | None:intergenic | 55.0% | |
| GTGTGGAAGGCTTAGCCGTT+TGG | + | chr5.3:22979644-22979663 | MS.gene53460:intron | 55.0% | |
| GTTAGCAGGTGGTGTGTGGA+AGG | + | chr5.3:22979631-22979650 | MS.gene53460:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | + | chr5.3:22979772-22979791 | MS.gene53460:intron | 55.0% | |
| ! | ACGAGTGGTGTTGGAATCCC+CGG | + | chr5.3:22979361-22979380 | MS.gene53460:intron | 55.0% |
| ! | TCAGGCTTCAGGTTTGGCAG+TGG | + | chr5.3:22979594-22979613 | MS.gene53460:intron | 55.0% |
| !! | GTGGGATGATTTGGTGGAGG+AGG | + | chr5.3:22979278-22979297 | MS.gene53460:intron | 55.0% |
| !!! | CAGCTGCTGGTTTTTGGGTG+GGG | + | chr5.3:22979522-22979541 | MS.gene53460:intron | 55.0% |
| !!! | CCAGCTGCTGGTTTTTGGGT+GGG | + | chr5.3:22979521-22979540 | MS.gene53460:intron | 55.0% |
| CCCACCCAAAAACCAGCAGC+TGG | - | chr5.3:22979524-22979543 | None:intergenic | 60.0% | |
| GGGTGAGAAGGGACGTAGGA+TGG | + | chr5.3:22978948-22978967 | MS.gene53460:CDS | 60.0% | |
| ! | CGAGTGGTGTTGGAATCCCC+GGG | + | chr5.3:22979362-22979381 | MS.gene53460:intron | 60.0% |
| !! | GGACTGATTTGGCCAGCTGC+TGG | + | chr5.3:22979509-22979528 | MS.gene53460:intron | 60.0% |
| !!! | GCCAGCTGCTGGTTTTTGGG+TGG | + | chr5.3:22979520-22979539 | MS.gene53460:intron | 60.0% |
| !!! | GGTTTTTGGGTGGGGTGCAC+TGG | + | chr5.3:22979530-22979549 | MS.gene53460:intron | 60.0% |
| AACAGCAGCGCCACACCAGC+AGG | - | chr5.3:22979422-22979441 | None:intergenic | 65.0% | |
| AACAGGAGCCACGCCTGCAG+TGG | + | chr5.3:22979058-22979077 | MS.gene53460:CDS | 65.0% | |
| ACAGCAGCGCCACACCAGCA+GGG | - | chr5.3:22979421-22979440 | None:intergenic | 65.0% | |
| TACCTCCTCCACTGCAGGCG+TGG | - | chr5.3:22979069-22979088 | None:intergenic | 65.0% | |
| AGCCACGCCTGCAGTGGAGG+AGG | + | chr5.3:22979064-22979083 | MS.gene53460:CDS | 70.0% | |
| AGGAGCCACGCCTGCAGTGG+AGG | + | chr5.3:22979061-22979080 | MS.gene53460:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 22978754 | 22980386 | 22978754 | ID=MS.gene53460 |
| chr5.3 | mRNA | 22978754 | 22980386 | 22978754 | ID=MS.gene53460.t1;Parent=MS.gene53460 |
| chr5.3 | exon | 22978754 | 22978969 | 22978754 | ID=MS.gene53460.t1.exon1;Parent=MS.gene53460.t1 |
| chr5.3 | CDS | 22978754 | 22978969 | 22978754 | ID=cds.MS.gene53460.t1;Parent=MS.gene53460.t1 |
| chr5.3 | exon | 22979050 | 22979151 | 22979050 | ID=MS.gene53460.t1.exon2;Parent=MS.gene53460.t1 |
| chr5.3 | CDS | 22979050 | 22979151 | 22979050 | ID=cds.MS.gene53460.t1;Parent=MS.gene53460.t1 |
| chr5.3 | exon | 22979904 | 22980386 | 22979904 | ID=MS.gene53460.t1.exon3;Parent=MS.gene53460.t1 |
| chr5.3 | CDS | 22979904 | 22980386 | 22979904 | ID=cds.MS.gene53460.t1;Parent=MS.gene53460.t1 |
| Gene Sequence |
| Protein sequence |
