Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53504.t1 | XP_003630023.2 | 45.5 | 488 | 146 | 8 | 2 | 384 | 17 | 489 | 1.90E-59 | 240 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53504.t1 | G7L9M5 | 45.5 | 488 | 146 | 8 | 2 | 384 | 17 | 489 | 1.4e-59 | 240.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051789 | MS.gene53504 | 0.817591 | 3.05E-52 | -1.69E-46 |
| MS.gene053074 | MS.gene53504 | 0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene53504 | 0.805 | 1.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53504.t1 | MTR_4g417280 | 54.830 | 352 | 91 | 7 | 60 | 384 | 336 | 646 | 7.59e-95 | 297 |
| MS.gene53504.t1 | MTR_4g417290 | 75.135 | 185 | 46 | 0 | 200 | 384 | 75 | 259 | 6.41e-90 | 272 |
| MS.gene53504.t1 | MTR_8g089435 | 81.765 | 170 | 10 | 2 | 203 | 372 | 45 | 193 | 3.01e-86 | 265 |
| MS.gene53504.t1 | MTR_8g089440 | 63.229 | 223 | 60 | 4 | 2 | 202 | 17 | 239 | 3.30e-73 | 237 |
| MS.gene53504.t1 | MTR_8g089440 | 50.000 | 182 | 76 | 2 | 203 | 384 | 323 | 489 | 7.70e-40 | 148 |
| MS.gene53504.t1 | MTR_8g089500 | 39.130 | 437 | 172 | 11 | 24 | 384 | 3 | 421 | 2.48e-71 | 230 |
| MS.gene53504.t1 | MTR_2g006000 | 53.191 | 188 | 70 | 6 | 26 | 202 | 4 | 184 | 7.04e-42 | 152 |
| MS.gene53504.t1 | MTR_2g006000 | 40.984 | 183 | 98 | 3 | 203 | 383 | 247 | 421 | 3.03e-28 | 115 |
| MS.gene53504.t1 | MTR_8g089480 | 50.000 | 182 | 76 | 2 | 203 | 384 | 264 | 430 | 6.67e-40 | 147 |
| MS.gene53504.t1 | MTR_8g089480 | 55.645 | 124 | 38 | 2 | 88 | 202 | 65 | 180 | 1.10e-28 | 116 |
| MS.gene53504.t1 | MTR_8g089530 | 47.253 | 182 | 88 | 2 | 203 | 384 | 246 | 419 | 1.04e-36 | 138 |
| MS.gene53504.t1 | MTR_5g046650 | 69.767 | 86 | 26 | 0 | 238 | 323 | 88 | 173 | 1.98e-29 | 112 |
| MS.gene53504.t1 | MTR_2g022010 | 37.500 | 224 | 97 | 8 | 55 | 237 | 36 | 257 | 2.56e-24 | 102 |
| MS.gene53504.t1 | MTR_8g089540 | 34.911 | 169 | 95 | 2 | 215 | 383 | 53 | 206 | 9.71e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 73 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAATTGTCAGAGAATT+TGG | 0.133712 | 4.2:+12143801 | MS.gene53504:CDS |
| AATTGACGCAATTAAAATTC+TGG | 0.228537 | 4.2:+12143645 | MS.gene53504:CDS |
| GCCTCTTTCTGCCCCAAATC+TGG | 0.268347 | 4.2:-12143050 | None:intergenic |
| TCTCACATTGGAACCAGATT+TGG | 0.272808 | 4.2:+12143037 | MS.gene53504:CDS |
| GTATGCAACTGGATCTTAAA+TGG | 0.277527 | 4.2:+12143599 | MS.gene53504:CDS |
| CTCACATTGGAACCAGATTT+GGG | 0.289147 | 4.2:+12143038 | MS.gene53504:CDS |
| AGTCACAGTCTTGGAGTTCT+TGG | 0.291903 | 4.2:+12142532 | MS.gene53504:intron |
| ATCAATTTGATTTGAATTGT+TGG | 0.297024 | 4.2:-12143120 | None:intergenic |
| GACTGTTCTCTTGAGATCTT+AGG | 0.363025 | 4.2:-12142669 | None:intergenic |
| AACAATTCAAATCAAATTGA+TGG | 0.363110 | 4.2:+12143122 | MS.gene53504:CDS |
| TGACTTTAGATGTGCAATAC+TGG | 0.365701 | 4.2:-12143906 | None:intergenic |
| CCCTCATGAAAAGGAACCTT+TGG | 0.369997 | 4.2:+12143169 | MS.gene53504:CDS |
| TCAGAAATCACGTTGGAATT+CGG | 0.375341 | 4.2:-12142588 | None:intergenic |
| GTCACAGTCTTGGAGTTCTT+GGG | 0.380641 | 4.2:+12142533 | MS.gene53504:intron |
| GCCTACATTAAGAAGATTAT+CGG | 0.389716 | 4.2:+12143406 | MS.gene53504:intron |
| TACTTTCTCAAATCTATTTG+AGG | 0.394127 | 4.2:-12143207 | None:intergenic |
| TGTGGAATCTTACACGACTT+TGG | 0.411900 | 4.2:+12143502 | MS.gene53504:CDS |
| TGAAGATGCTGAAAGTGAAT+TGG | 0.417417 | 4.2:+12143717 | MS.gene53504:CDS |
| GAAAGACCGTTCAAAATTGT+TGG | 0.424908 | 4.2:+12143471 | MS.gene53504:CDS |
| CTTACACGACTTTGGAGATA+AGG | 0.434289 | 4.2:+12143510 | MS.gene53504:CDS |
| TTGTTGGACAAGGGCATCTC+AGG | 0.441338 | 4.2:-12143104 | None:intergenic |
| ACTTGTACCAGGTCTCTTGA+TGG | 0.472230 | 4.2:-12143005 | None:intergenic |
| TGGCTGGTACATCAAGTTGT+TGG | 0.474031 | 4.2:-12142710 | None:intergenic |
| CTGAAACGCTCAGTGATGGA+TGG | 0.482369 | 4.2:+12143937 | MS.gene53504:CDS |
| AGAAATTATCCCTCATGAAA+AGG | 0.483741 | 4.2:+12143160 | MS.gene53504:CDS |
| ATACGAACAAGGTATGCAAC+TGG | 0.489551 | 4.2:+12143588 | MS.gene53504:CDS |
| AAGCATGTAAGCCTTCAGTA+TGG | 0.496979 | 4.2:+12144307 | MS.gene53504:CDS |
| GCTTGAGTTTCCTCTGCCAA+AGG | 0.499654 | 4.2:-12143185 | None:intergenic |
| AATCGCTTTCTAGCAGAGAC+AGG | 0.502294 | 4.2:-12142561 | None:intergenic |
| GGTAGTGACAGAGAAGATGA+AGG | 0.506536 | 4.2:+12143762 | MS.gene53504:CDS |
| TAGTCATACAACCCCGGAAG+AGG | 0.509137 | 4.2:+12141480 | MS.gene53504:CDS |
| TCTTCCGGGGTTGTATGACT+AGG | 0.518512 | 4.2:-12141478 | None:intergenic |
| CTTGTACCAGGTCTCTTGAT+GGG | 0.520952 | 4.2:-12143004 | None:intergenic |
| ACCAGATTTGGGGCAGAAAG+AGG | 0.521777 | 4.2:+12143049 | MS.gene53504:CDS |
| CTTTCTGAAACGCTCAGTGA+TGG | 0.532114 | 4.2:+12143933 | MS.gene53504:CDS |
| AATGTTGAAAACTTAACAGC+AGG | 0.538377 | 4.2:+12143077 | MS.gene53504:CDS |
| TCATACAGAATTGATTGTGT+TGG | 0.541567 | 4.2:-12142730 | None:intergenic |
| AGTCATACAACCCCGGAAGA+GGG | 0.545500 | 4.2:+12141481 | MS.gene53504:CDS |
| TATATGTTCAGTCACAGTCT+TGG | 0.547990 | 4.2:+12142523 | MS.gene53504:intron |
| TTATTACCTCAGAGTGGGAA+AGG | 0.550048 | 4.2:-12141568 | None:intergenic |
| GAGGATGAGCAACTTGTACC+AGG | 0.554434 | 4.2:-12143016 | None:intergenic |
| CACTTCAGGGACCATACTGA+AGG | 0.556135 | 4.2:-12144318 | None:intergenic |
| AGCAAGATTGCTCTTGTCAA+CGG | 0.569215 | 4.2:+12143565 | MS.gene53504:CDS |
| AAGAAGATTATCGGCAAGCA+TGG | 0.570869 | 4.2:+12143415 | MS.gene53504:intron |
| AAAAGCAGAAGAGGAAAGTG+GGG | 0.571256 | 4.2:+12141513 | MS.gene53504:CDS |
| ACAGAATTGATTGTGTTGGC+TGG | 0.584618 | 4.2:-12142726 | None:intergenic |
| TTTGGTCTTCCCCTCTTCCG+GGG | 0.585655 | 4.2:-12141491 | None:intergenic |
| TTGATTTGAATTGTTGGACA+AGG | 0.585719 | 4.2:-12143114 | None:intergenic |
| TGATTTGAATTGTTGGACAA+GGG | 0.589023 | 4.2:-12143113 | None:intergenic |
| TTGTACCAGGTCTCTTGATG+GGG | 0.595733 | 4.2:-12143003 | None:intergenic |
| ATGGAACACTTGGACGAGGA+AGG | 0.597341 | 4.2:+12141452 | MS.gene53504:CDS |
| AAAGATTATTACCTCAGAGT+GGG | 0.598538 | 4.2:-12141573 | None:intergenic |
| GTCATACAACCCCGGAAGAG+GGG | 0.598629 | 4.2:+12141482 | MS.gene53504:CDS |
| TGAAAAGGAACCTTTGGCAG+AGG | 0.600193 | 4.2:+12143175 | MS.gene53504:CDS |
| CTTGTCAACGGATACGAACA+AGG | 0.601304 | 4.2:+12143577 | MS.gene53504:CDS |
| AAATTGTTGGAGATAATCTG+TGG | 0.603205 | 4.2:+12143484 | MS.gene53504:CDS |
| GTAGGCATATCAAGTTGAAG+AGG | 0.619063 | 4.2:+12142959 | MS.gene53504:intron |
| AAAAGATTATTACCTCAGAG+TGG | 0.623157 | 4.2:-12141574 | None:intergenic |
| GCATATCAAGTTGAAGAGGA+AGG | 0.623302 | 4.2:+12142963 | MS.gene53504:CDS |
| GGTAAACTCATTCTTTGCTG+CGG | 0.625367 | 4.2:-12143866 | None:intergenic |
| CTGGACTGTTTGAGATATCG+AGG | 0.628244 | 4.2:-12143887 | None:intergenic |
| AGTTGCTCATCCTCTCACAT+TGG | 0.628720 | 4.2:+12143025 | MS.gene53504:CDS |
| AAATCTGGTTCCAATGTGAG+AGG | 0.636117 | 4.2:-12143035 | None:intergenic |
| GAAATCACGTTGGAATTCGG+AGG | 0.645152 | 4.2:-12142585 | None:intergenic |
| ATCGCTTTCTAGCAGAGACA+GGG | 0.654243 | 4.2:-12142560 | None:intergenic |
| TCACATTGGAACCAGATTTG+GGG | 0.665852 | 4.2:+12143039 | MS.gene53504:CDS |
| ACAATCCCCATCAAGAGACC+TGG | 0.669105 | 4.2:+12142998 | MS.gene53504:CDS |
| TCACAACCTTTCCCACTCTG+AGG | 0.669460 | 4.2:+12141562 | MS.gene53504:CDS |
| AAGTTGTTGGATGCTATCAG+AGG | 0.670200 | 4.2:-12142697 | None:intergenic |
| GCTTCGCATGAGTCTAGCTG+AGG | 0.675228 | 4.2:+12143621 | MS.gene53504:CDS |
| GCAACCTAGTCATACAACCC+CGG | 0.700048 | 4.2:+12141474 | MS.gene53504:CDS |
| ACGGCGATCAGAAATCACGT+TGG | 0.709065 | 4.2:-12142595 | None:intergenic |
| TAAGAATTGTGTGACAAAGT+CGG | 0.710057 | 4.2:+12143447 | MS.gene53504:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATCTTTTTTTCTTTTTA+AGG | + | chr4.2:12141587-12141606 | MS.gene53504:intron | 10.0% |
| !! | GTATTGAATGTTAAAATATA+TGG | - | chr4.2:12142305-12142324 | None:intergenic | 15.0% |
| !!! | GTATCAGTTTTATTTTTATT+TGG | + | chr4.2:12144251-12144270 | MS.gene53504:intron | 15.0% |
| !! | AACAATTCAAATCAAATTGA+TGG | + | chr4.2:12143122-12143141 | MS.gene53504:CDS | 20.0% |
| !! | AGAAATCATCTATATATAGA+TGG | + | chr4.2:12142895-12142914 | MS.gene53504:intron | 20.0% |
| !! | CATATTATGAAATTTGATGT+AGG | + | chr4.2:12142941-12142960 | MS.gene53504:intron | 20.0% |
| !! | CTAAAAAACTAAGATGAAAT+AGG | - | chr4.2:12142819-12142838 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAAACATGAACT+TGG | + | chr4.2:12141686-12141705 | MS.gene53504:intron | 20.0% |
| !!! | ATCAATTTGATTTGAATTGT+TGG | - | chr4.2:12143123-12143142 | None:intergenic | 20.0% |
| !!! | GAAGTGTTTTAAAATCAAAT+AGG | - | chr4.2:12144221-12144240 | None:intergenic | 20.0% |
| !!! | TTTTAGAAAATCTAAAGTCA+CGG | - | chr4.2:12142617-12142636 | None:intergenic | 20.0% |
| ! | AAAAAATCTCTCCTTTAACA+TGG | - | chr4.2:12142167-12142186 | None:intergenic | 25.0% |
| ! | AAAAATCGAAAAAAGTTTCG+TGG | + | chr4.2:12143540-12143559 | MS.gene53504:CDS | 25.0% |
| ! | AATGTCAGTAATATACAAAG+AGG | + | chr4.2:12142411-12142430 | MS.gene53504:intron | 25.0% |
| ! | AATTGACGCAATTAAAATTC+TGG | + | chr4.2:12143645-12143664 | MS.gene53504:CDS | 25.0% |
| ! | CTTTAACATGGAAAATTCTA+TGG | - | chr4.2:12142155-12142174 | None:intergenic | 25.0% |
| ! | GAGAGGTAGAATTTATTTAA+GGG | + | chr4.2:12141727-12141746 | MS.gene53504:intron | 25.0% |
| ! | TACTTTCTCAAATCTATTTG+AGG | - | chr4.2:12143210-12143229 | None:intergenic | 25.0% |
| ! | TCCTTAAAATAATTTCTACC+TGG | - | chr4.2:12142256-12142275 | None:intergenic | 25.0% |
| ! | TGAGAGGTAGAATTTATTTA+AGG | + | chr4.2:12141726-12141745 | MS.gene53504:intron | 25.0% |
| ! | TGTTACACTTAAAACAAAGT+AGG | + | chr4.2:12141972-12141991 | MS.gene53504:intron | 25.0% |
| !! | CATAGAATTTTCCATGTTAA+AGG | + | chr4.2:12142153-12142172 | MS.gene53504:intron | 25.0% |
| !! | GTGACTTTAGATTTTCTAAA+AGG | + | chr4.2:12142616-12142635 | MS.gene53504:CDS | 25.0% |
| !! | TACAGATACTATTTTATCGT+TGG | + | chr4.2:12141883-12141902 | MS.gene53504:intron | 25.0% |
| !! | TTATCTCCAACAATTTTGAA+CGG | - | chr4.2:12143480-12143499 | None:intergenic | 25.0% |
| !!! | ACCAGGTAGAAATTATTTTA+AGG | + | chr4.2:12142252-12142271 | MS.gene53504:intron | 25.0% |
| !!! | CATTTTAGCTTTTATAGAAG+TGG | + | chr4.2:12141636-12141655 | MS.gene53504:intron | 25.0% |
| !!! | TTTATTTGGTCTGTCATTTT+AGG | + | chr4.2:12144265-12144284 | MS.gene53504:intron | 25.0% |
| !!! | TTTGATTTTCAAAGCTTAGT+TGG | + | chr4.2:12144158-12144177 | MS.gene53504:intron | 25.0% |
| AAAAGATTATTACCTCAGAG+TGG | - | chr4.2:12141577-12141596 | None:intergenic | 30.0% | |
| AAAATAATTTCTACCTGGTG+TGG | - | chr4.2:12142251-12142270 | None:intergenic | 30.0% | |
| AAAGATTATTACCTCAGAGT+GGG | - | chr4.2:12141576-12141595 | None:intergenic | 30.0% | |
| AAATAATTTCTACCTGGTGT+GGG | - | chr4.2:12142250-12142269 | None:intergenic | 30.0% | |
| AAATTGTTGGAGATAATCTG+TGG | + | chr4.2:12143484-12143503 | MS.gene53504:CDS | 30.0% | |
| AATGTTGAAAACTTAACAGC+AGG | + | chr4.2:12143077-12143096 | MS.gene53504:CDS | 30.0% | |
| AGAAATTATCCCTCATGAAA+AGG | + | chr4.2:12143160-12143179 | MS.gene53504:CDS | 30.0% | |
| ATCCTTACTTTCAACTTTGT+TGG | + | chr4.2:12142494-12142513 | MS.gene53504:intron | 30.0% | |
| GCCTACATTAAGAAGATTAT+CGG | + | chr4.2:12143406-12143425 | MS.gene53504:intron | 30.0% | |
| TAAGAATTGTGTGACAAAGT+CGG | + | chr4.2:12143447-12143466 | MS.gene53504:CDS | 30.0% | |
| TAATAGATGCTGATGAATGT+TGG | - | chr4.2:12142854-12142873 | None:intergenic | 30.0% | |
| TAGTAATGCTTGCAAAATCT+TGG | + | chr4.2:12141857-12141876 | MS.gene53504:intron | 30.0% | |
| TCATACAGAATTGATTGTGT+TGG | - | chr4.2:12142733-12142752 | None:intergenic | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr4.2:12141948-12141967 | MS.gene53504:intron | 30.0% | |
| TGATTTGAATTGTTGGACAA+GGG | - | chr4.2:12143116-12143135 | None:intergenic | 30.0% | |
| TTTATTTAAGGGAGCTTCTA+TGG | + | chr4.2:12141738-12141757 | MS.gene53504:intron | 30.0% | |
| ! | AAGATGAAATAGGTGTTATG+AGG | - | chr4.2:12142809-12142828 | None:intergenic | 30.0% |
| ! | AGTCTTGAAAATGACTTTTC+TGG | - | chr4.2:12142129-12142148 | None:intergenic | 30.0% |
| ! | TCTTCTATTTTCTGCTTCTT+TGG | - | chr4.2:12141542-12141561 | None:intergenic | 30.0% |
| ! | TTGATTTGAATTGTTGGACA+AGG | - | chr4.2:12143117-12143136 | None:intergenic | 30.0% |
| !! | AGTTTTTGAAGAACAGAAGA+AGG | + | chr4.2:12143741-12143760 | MS.gene53504:CDS | 30.0% |
| !! | GTGTAGTCTTGTTAATTTGA+TGG | + | chr4.2:12142010-12142029 | MS.gene53504:intron | 30.0% |
| !! | TTATTCATGGTGGTTGTTTT+AGG | + | chr4.2:12143999-12144018 | MS.gene53504:intron | 30.0% |
| !!! | AGTTAGGAAACTGACTTTTT+TGG | + | chr4.2:12141764-12141783 | MS.gene53504:intron | 30.0% |
| AAAAAAGCAGAAGAGGAAAG+TGG | + | chr4.2:12141511-12141530 | MS.gene53504:CDS | 35.0% | |
| AAAAAGCAGAAGAGGAAAGT+GGG | + | chr4.2:12141512-12141531 | MS.gene53504:CDS | 35.0% | |
| AATTTGAGGAGGCTAAAAGA+TGG | - | chr4.2:12143272-12143291 | None:intergenic | 35.0% | |
| ACAAAATGTCTTTGTCGTGT+TGG | + | chr4.2:12142467-12142486 | MS.gene53504:intron | 35.0% | |
| ACCATCATCATTTCTCAACA+TGG | - | chr4.2:12143309-12143328 | None:intergenic | 35.0% | |
| ACCATGAATAAAGCAGAAAC+AGG | - | chr4.2:12143990-12144009 | None:intergenic | 35.0% | |
| AGCCAACAAAGTTGAAAGTA+AGG | - | chr4.2:12142499-12142518 | None:intergenic | 35.0% | |
| ATTTGAGGAGGCTAAAAGAT+GGG | - | chr4.2:12143271-12143290 | None:intergenic | 35.0% | |
| CAACCACTTCAGTAAATTTG+AGG | - | chr4.2:12143286-12143305 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr4.2:12141949-12141968 | MS.gene53504:intron | 35.0% | |
| CTTAATGTAGGCATGAATTC+TGG | - | chr4.2:12143398-12143417 | None:intergenic | 35.0% | |
| GAAAGACCGTTCAAAATTGT+TGG | + | chr4.2:12143471-12143490 | MS.gene53504:CDS | 35.0% | |
| GAGAGAATTGTCAGAGAATT+TGG | + | chr4.2:12143801-12143820 | MS.gene53504:CDS | 35.0% | |
| GCCGATAATCTTCTTAATGT+AGG | - | chr4.2:12143410-12143429 | None:intergenic | 35.0% | |
| GTATGCAACTGGATCTTAAA+TGG | + | chr4.2:12143599-12143618 | MS.gene53504:CDS | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr4.2:12141947-12141966 | MS.gene53504:intron | 35.0% | |
| TATATGTTCAGTCACAGTCT+TGG | + | chr4.2:12142523-12142542 | MS.gene53504:intron | 35.0% | |
| TCAGAAATCACGTTGGAATT+CGG | - | chr4.2:12142591-12142610 | None:intergenic | 35.0% | |
| TGAAGATGCTGAAAGTGAAT+TGG | + | chr4.2:12143717-12143736 | MS.gene53504:CDS | 35.0% | |
| TGACTTTAGATGTGCAATAC+TGG | - | chr4.2:12143909-12143928 | None:intergenic | 35.0% | |
| TGATGATTTCAGTTTGTGAG+AGG | + | chr4.2:12141710-12141729 | MS.gene53504:intron | 35.0% | |
| ! | TGTTTCTGCTTTATTCATGG+TGG | + | chr4.2:12143989-12144008 | MS.gene53504:intron | 35.0% |
| !! | AAATGATGATGGTGATGATG+AGG | + | chr4.2:12143316-12143335 | MS.gene53504:intron | 35.0% |
| !! | ATGATGTCTATTTCTAGAGC+TGG | + | chr4.2:12143236-12143255 | MS.gene53504:intron | 35.0% |
| !! | GATGGATTGATGATACAATG+AGG | + | chr4.2:12142028-12142047 | MS.gene53504:intron | 35.0% |
| !! | TCCTGTTTCTGCTTTATTCA+TGG | + | chr4.2:12143986-12144005 | MS.gene53504:intron | 35.0% |
| !!! | ACTTTCCTCTTCTGCTTTTT+TGG | - | chr4.2:12141512-12141531 | None:intergenic | 35.0% |
| AAAAGCAGAAGAGGAAAGTG+GGG | + | chr4.2:12141513-12141532 | MS.gene53504:CDS | 40.0% | |
| AAGAAGATTATCGGCAAGCA+TGG | + | chr4.2:12143415-12143434 | MS.gene53504:intron | 40.0% | |
| AAGCATGTAAGCCTTCAGTA+TGG | + | chr4.2:12144307-12144326 | MS.gene53504:CDS | 40.0% | |
| AAGTTGTTGGATGCTATCAG+AGG | - | chr4.2:12142700-12142719 | None:intergenic | 40.0% | |
| AGCAAGATTGCTCTTGTCAA+CGG | + | chr4.2:12143565-12143584 | MS.gene53504:CDS | 40.0% | |
| ATACGAACAAGGTATGCAAC+TGG | + | chr4.2:12143588-12143607 | MS.gene53504:CDS | 40.0% | |
| CCACTTCAGTAAATTTGAGG+AGG | - | chr4.2:12143283-12143302 | None:intergenic | 40.0% | |
| CCTCCTCAAATTTACTGAAG+TGG | + | chr4.2:12143280-12143299 | MS.gene53504:intron | 40.0% | |
| CTCACATTGGAACCAGATTT+GGG | + | chr4.2:12143038-12143057 | MS.gene53504:CDS | 40.0% | |
| GAAGACCAAAAAAGCAGAAG+AGG | + | chr4.2:12141504-12141523 | MS.gene53504:CDS | 40.0% | |
| GACTGTTCTCTTGAGATCTT+AGG | - | chr4.2:12142672-12142691 | None:intergenic | 40.0% | |
| GCCATGTTGAGAAATGATGA+TGG | + | chr4.2:12143305-12143324 | MS.gene53504:intron | 40.0% | |
| GGTAAACTCATTCTTTGCTG+CGG | - | chr4.2:12143869-12143888 | None:intergenic | 40.0% | |
| GTAACATCCCACTGTTTGTA+CGG | - | chr4.2:12142072-12142091 | None:intergenic | 40.0% | |
| TATCCATAAACAGTGTCCTC+AGG | - | chr4.2:12143365-12143384 | None:intergenic | 40.0% | |
| TCACATTGGAACCAGATTTG+GGG | + | chr4.2:12143039-12143058 | MS.gene53504:CDS | 40.0% | |
| TCTCACATTGGAACCAGATT+TGG | + | chr4.2:12143037-12143056 | MS.gene53504:CDS | 40.0% | |
| TGTGGAATCTTACACGACTT+TGG | + | chr4.2:12143502-12143521 | MS.gene53504:CDS | 40.0% | |
| TTATTACCTCAGAGTGGGAA+AGG | - | chr4.2:12141571-12141590 | None:intergenic | 40.0% | |
| TTTGAGGAGGCTAAAAGATG+GGG | - | chr4.2:12143270-12143289 | None:intergenic | 40.0% | |
| ! | AAATCTGGTTCCAATGTGAG+AGG | - | chr4.2:12143038-12143057 | None:intergenic | 40.0% |
| ! | ACAGAATTGATTGTGTTGGC+TGG | - | chr4.2:12142729-12142748 | None:intergenic | 40.0% |
| ! | CCAAAGGTTCCTTTTCATGA+GGG | - | chr4.2:12143172-12143191 | None:intergenic | 40.0% |
| ! | CTTACACGACTTTGGAGATA+AGG | + | chr4.2:12143510-12143529 | MS.gene53504:CDS | 40.0% |
| ! | TGGTGATGATGAGGTTGATT+CGG | + | chr4.2:12143325-12143344 | MS.gene53504:intron | 40.0% |
| !! | GCATATCAAGTTGAAGAGGA+AGG | + | chr4.2:12142963-12142982 | MS.gene53504:CDS | 40.0% |
| !! | GTAGGCATATCAAGTTGAAG+AGG | + | chr4.2:12142959-12142978 | MS.gene53504:intron | 40.0% |
| !!! | TTTGGTCTGTCATTTTAGGC+TGG | + | chr4.2:12144269-12144288 | MS.gene53504:intron | 40.0% |
| ACTTGTACCAGGTCTCTTGA+TGG | - | chr4.2:12143008-12143027 | None:intergenic | 45.0% | |
| AGTCACAGTCTTGGAGTTCT+TGG | + | chr4.2:12142532-12142551 | MS.gene53504:intron | 45.0% | |
| AGTTGCTCATCCTCTCACAT+TGG | + | chr4.2:12143025-12143044 | MS.gene53504:CDS | 45.0% | |
| CAAAGCTTAGTTGGATGCAG+TGG | + | chr4.2:12144167-12144186 | MS.gene53504:intron | 45.0% | |
| CCCTCATGAAAAGGAACCTT+TGG | + | chr4.2:12143169-12143188 | MS.gene53504:CDS | 45.0% | |
| CTTGTACCAGGTCTCTTGAT+GGG | - | chr4.2:12143007-12143026 | None:intergenic | 45.0% | |
| CTTGTCAACGGATACGAACA+AGG | + | chr4.2:12143577-12143596 | MS.gene53504:CDS | 45.0% | |
| GAAATCACGTTGGAATTCGG+AGG | - | chr4.2:12142588-12142607 | None:intergenic | 45.0% | |
| GATGTCACCGTACAAACAGT+GGG | + | chr4.2:12142062-12142081 | MS.gene53504:intron | 45.0% | |
| GGTAGTGACAGAGAAGATGA+AGG | + | chr4.2:12143762-12143781 | MS.gene53504:CDS | 45.0% | |
| GTCACAGTCTTGGAGTTCTT+GGG | + | chr4.2:12142533-12142552 | MS.gene53504:intron | 45.0% | |
| TCTACCTGGTGTGGGTAAAA+AGG | - | chr4.2:12142242-12142261 | None:intergenic | 45.0% | |
| TGAAAAGGAACCTTTGGCAG+AGG | + | chr4.2:12143175-12143194 | MS.gene53504:CDS | 45.0% | |
| TGATGTCACCGTACAAACAG+TGG | + | chr4.2:12142061-12142080 | MS.gene53504:intron | 45.0% | |
| TTGTACCAGGTCTCTTGATG+GGG | - | chr4.2:12143006-12143025 | None:intergenic | 45.0% | |
| ! | AATCGCTTTCTAGCAGAGAC+AGG | - | chr4.2:12142564-12142583 | None:intergenic | 45.0% |
| ! | ATCGCTTTCTAGCAGAGACA+GGG | - | chr4.2:12142563-12142582 | None:intergenic | 45.0% |
| ! | CTGGACTGTTTGAGATATCG+AGG | - | chr4.2:12143890-12143909 | None:intergenic | 45.0% |
| ! | GCCAAAGGTTCCTTTTCATG+AGG | - | chr4.2:12143173-12143192 | None:intergenic | 45.0% |
| ! | TGGCTGGTACATCAAGTTGT+TGG | - | chr4.2:12142713-12142732 | None:intergenic | 45.0% |
| ! | TTCTCCTTTTTACCCACACC+AGG | + | chr4.2:12142235-12142254 | MS.gene53504:intron | 45.0% |
| !! | CTTTCTGAAACGCTCAGTGA+TGG | + | chr4.2:12143933-12143952 | MS.gene53504:CDS | 45.0% |
| !! | TTTTTGGTCTTCCCCTCTTC+CGG | - | chr4.2:12141496-12141515 | None:intergenic | 45.0% |
| ACAATCCCCATCAAGAGACC+TGG | + | chr4.2:12142998-12143017 | MS.gene53504:CDS | 50.0% | |
| ACGGCGATCAGAAATCACGT+TGG | - | chr4.2:12142598-12142617 | None:intergenic | 50.0% | |
| AGTCATACAACCCCGGAAGA+GGG | + | chr4.2:12141481-12141500 | MS.gene53504:CDS | 50.0% | |
| ATGGAACACTTGGACGAGGA+AGG | + | chr4.2:12141452-12141471 | MS.gene53504:CDS | 50.0% | |
| CAGCCTGAGGACACTGTTTA+TGG | + | chr4.2:12143359-12143378 | MS.gene53504:intron | 50.0% | |
| CATAAACAGTGTCCTCAGGC+TGG | - | chr4.2:12143361-12143380 | None:intergenic | 50.0% | |
| GAGGATGAGCAACTTGTACC+AGG | - | chr4.2:12143019-12143038 | None:intergenic | 50.0% | |
| GCAACCTAGTCATACAACCC+CGG | + | chr4.2:12141474-12141493 | MS.gene53504:CDS | 50.0% | |
| GCTTGAGTTTCCTCTGCCAA+AGG | - | chr4.2:12143188-12143207 | None:intergenic | 50.0% | |
| GGAAATTCAAAGCCAGCCTG+AGG | + | chr4.2:12143346-12143365 | MS.gene53504:intron | 50.0% | |
| GGAGCTTCTATGGTGCAGTT+AGG | + | chr4.2:12141748-12141767 | MS.gene53504:intron | 50.0% | |
| TAGTCATACAACCCCGGAAG+AGG | + | chr4.2:12141480-12141499 | MS.gene53504:CDS | 50.0% | |
| TCACAACCTTTCCCACTCTG+AGG | + | chr4.2:12141562-12141581 | MS.gene53504:CDS | 50.0% | |
| TCTTCCGGGGTTGTATGACT+AGG | - | chr4.2:12141481-12141500 | None:intergenic | 50.0% | |
| ! | ACCAGATTTGGGGCAGAAAG+AGG | + | chr4.2:12143049-12143068 | MS.gene53504:CDS | 50.0% |
| ! | CTGAAACGCTCAGTGATGGA+TGG | + | chr4.2:12143937-12143956 | MS.gene53504:CDS | 50.0% |
| !! | TTGTTGGACAAGGGCATCTC+AGG | - | chr4.2:12143107-12143126 | None:intergenic | 50.0% |
| !! | TTTTGGTCTTCCCCTCTTCC+GGG | - | chr4.2:12141495-12141514 | None:intergenic | 50.0% |
| GCCTCTTTCTGCCCCAAATC+TGG | - | chr4.2:12143053-12143072 | None:intergenic | 55.0% | |
| GCTTCGCATGAGTCTAGCTG+AGG | + | chr4.2:12143621-12143640 | MS.gene53504:CDS | 55.0% | |
| GTCATACAACCCCGGAAGAG+GGG | + | chr4.2:12141482-12141501 | MS.gene53504:CDS | 55.0% | |
| ! | TTTGGTCTTCCCCTCTTCCG+GGG | - | chr4.2:12141494-12141513 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12141452 | 12144336 | 12141452 | ID=MS.gene53504 |
| chr4.2 | mRNA | 12141452 | 12144336 | 12141452 | ID=MS.gene53504.t1;Parent=MS.gene53504 |
| chr4.2 | exon | 12141452 | 12141583 | 12141452 | ID=MS.gene53504.t1.exon1;Parent=MS.gene53504.t1 |
| chr4.2 | CDS | 12141452 | 12141583 | 12141452 | ID=cds.MS.gene53504.t1;Parent=MS.gene53504.t1 |
| chr4.2 | exon | 12142534 | 12142746 | 12142534 | ID=MS.gene53504.t1.exon2;Parent=MS.gene53504.t1 |
| chr4.2 | CDS | 12142534 | 12142746 | 12142534 | ID=cds.MS.gene53504.t1;Parent=MS.gene53504.t1 |
| chr4.2 | exon | 12142963 | 12143226 | 12142963 | ID=MS.gene53504.t1.exon3;Parent=MS.gene53504.t1 |
| chr4.2 | CDS | 12142963 | 12143226 | 12142963 | ID=cds.MS.gene53504.t1;Parent=MS.gene53504.t1 |
| chr4.2 | exon | 12143418 | 12143958 | 12143418 | ID=MS.gene53504.t1.exon4;Parent=MS.gene53504.t1 |
| chr4.2 | CDS | 12143418 | 12143958 | 12143418 | ID=cds.MS.gene53504.t1;Parent=MS.gene53504.t1 |
| chr4.2 | exon | 12144287 | 12144336 | 12144287 | ID=MS.gene53504.t1.exon5;Parent=MS.gene53504.t1 |
| chr4.2 | CDS | 12144287 | 12144336 | 12144287 | ID=cds.MS.gene53504.t1;Parent=MS.gene53504.t1 |
| Gene Sequence |
| Protein sequence |
