Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53603.t1 | XP_013467157.1 | 94.6 | 429 | 21 | 1 | 1 | 429 | 1 | 427 | 1.40E-233 | 818.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53603.t1 | Q9NRX5 | 25.4 | 366 | 220 | 8 | 99 | 413 | 90 | 453 | 6.8e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53603.t1 | A0A072VIB5 | 94.6 | 429 | 21 | 1 | 1 | 429 | 1 | 427 | 1.0e-233 | 818.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53603 | MS.gene049133 | PPI |
| MS.gene53603 | MS.gene05930 | PPI |
| MS.gene53603 | MS.gene04773 | PPI |
| MS.gene53603 | MS.gene015739 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53603.t1 | MTR_1g046480 | 94.639 | 429 | 21 | 1 | 1 | 429 | 1 | 427 | 0.0 | 813 |
| MS.gene53603.t1 | MTR_8g103740 | 52.113 | 355 | 167 | 3 | 51 | 404 | 34 | 386 | 2.69e-127 | 374 |
| MS.gene53603.t1 | MTR_6g086060 | 49.468 | 376 | 184 | 5 | 43 | 414 | 28 | 401 | 1.19e-126 | 372 |
| MS.gene53603.t1 | MTR_8g103740 | 51.839 | 299 | 142 | 2 | 113 | 410 | 1 | 298 | 8.79e-113 | 333 |
| MS.gene53603.t1 | MTR_8g103740 | 53.140 | 207 | 97 | 0 | 204 | 410 | 1 | 207 | 1.55e-80 | 247 |
| MS.gene53603.t1 | MTR_2g022060 | 30.105 | 382 | 242 | 5 | 51 | 410 | 28 | 406 | 2.72e-54 | 186 |
| MS.gene53603.t1 | MTR_7g057720 | 29.427 | 384 | 241 | 9 | 51 | 410 | 31 | 408 | 2.33e-46 | 165 |
| MS.gene53603.t1 | MTR_7g057720 | 28.070 | 399 | 244 | 9 | 51 | 410 | 31 | 425 | 2.74e-43 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53603.t1 | AT2G33205 | 60.859 | 419 | 161 | 3 | 5 | 421 | 2 | 419 | 0.0 | 516 |
| MS.gene53603.t1 | AT2G33205 | 60.570 | 421 | 161 | 4 | 5 | 421 | 2 | 421 | 0.0 | 512 |
| MS.gene53603.t1 | AT2G33205 | 60.570 | 421 | 161 | 4 | 5 | 421 | 2 | 421 | 0.0 | 512 |
| MS.gene53603.t1 | AT2G33205 | 61.713 | 397 | 147 | 4 | 5 | 397 | 2 | 397 | 1.99e-172 | 489 |
| MS.gene53603.t1 | AT2G33205 | 60.322 | 373 | 143 | 4 | 5 | 373 | 2 | 373 | 1.77e-155 | 444 |
| MS.gene53603.t1 | AT2G33205 | 63.467 | 323 | 114 | 3 | 102 | 421 | 5 | 326 | 2.72e-143 | 412 |
| MS.gene53603.t1 | AT2G33205 | 64.103 | 312 | 108 | 3 | 113 | 421 | 1 | 311 | 3.16e-140 | 404 |
| MS.gene53603.t1 | AT2G33205 | 57.784 | 334 | 138 | 3 | 5 | 336 | 2 | 334 | 7.23e-130 | 378 |
| MS.gene53603.t1 | AT2G33205 | 57.784 | 334 | 138 | 3 | 5 | 336 | 2 | 334 | 7.23e-130 | 378 |
| MS.gene53603.t1 | AT3G24460 | 49.176 | 364 | 180 | 2 | 51 | 410 | 40 | 402 | 2.66e-128 | 377 |
| MS.gene53603.t1 | AT3G24460 | 49.176 | 364 | 180 | 2 | 51 | 410 | 40 | 402 | 2.66e-128 | 377 |
| MS.gene53603.t1 | AT4G13345 | 49.167 | 360 | 182 | 1 | 51 | 410 | 33 | 391 | 2.39e-125 | 369 |
| MS.gene53603.t1 | AT4G13345 | 48.611 | 360 | 184 | 1 | 51 | 410 | 33 | 391 | 4.04e-124 | 365 |
| MS.gene53603.t1 | AT4G13345 | 48.611 | 360 | 184 | 1 | 51 | 410 | 33 | 391 | 4.04e-124 | 365 |
| MS.gene53603.t1 | AT4G13345 | 49.280 | 347 | 175 | 1 | 51 | 397 | 33 | 378 | 1.05e-118 | 352 |
| MS.gene53603.t1 | AT4G13345 | 47.678 | 323 | 168 | 1 | 51 | 373 | 33 | 354 | 1.88e-103 | 311 |
| MS.gene53603.t1 | AT4G13345 | 46.063 | 254 | 136 | 1 | 51 | 304 | 33 | 285 | 8.85e-70 | 223 |
| MS.gene53603.t1 | AT4G13345 | 46.063 | 254 | 136 | 1 | 51 | 304 | 33 | 285 | 8.85e-70 | 223 |
| MS.gene53603.t1 | AT3G06170 | 29.659 | 381 | 244 | 5 | 51 | 410 | 29 | 406 | 1.31e-50 | 176 |
| MS.gene53603.t1 | AT1G16180 | 28.125 | 384 | 248 | 7 | 51 | 410 | 31 | 410 | 1.53e-41 | 152 |
| MS.gene53603.t1 | AT1G16180 | 28.125 | 384 | 248 | 7 | 51 | 410 | 31 | 410 | 1.53e-41 | 152 |
Find 73 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGCCCGTTATTATTT+TGG | 0.113799 | 1.2:+29275570 | MS.gene53603:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1.2:+29277946 | MS.gene53603:CDS |
| AACCACTATTTCCAATTTCT+TGG | 0.209768 | 1.2:-29277773 | None:intergenic |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1.2:-29277751 | None:intergenic |
| CTCTTCTTCGTTTCTTCGTC+TGG | 0.247468 | 1.2:-29276862 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1.2:-29277909 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1.2:+29277907 | MS.gene53603:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1.2:-29276828 | None:intergenic |
| GAGACAAATAACCAAGAAAT+TGG | 0.290791 | 1.2:+29277762 | MS.gene53603:CDS |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1.2:+29276498 | MS.gene53603:CDS |
| TTGATTTACCTGAAAGCATT+TGG | 0.328625 | 1.2:-29277954 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1.2:+29277144 | MS.gene53603:CDS |
| AACCAAGAAATTGGAAATAG+TGG | 0.389373 | 1.2:+29277771 | MS.gene53603:CDS |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1.2:+29276836 | MS.gene53603:CDS |
| GGGGTTCTCCGTGTGAGTTT+AGG | 0.395668 | 1.2:+29276041 | MS.gene53603:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1.2:-29278647 | None:intergenic |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1.2:+29278271 | MS.gene53603:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1.2:+29275987 | MS.gene53603:intron |
| AAAGTATACCTTTGAATGTA+AGG | 0.411856 | 1.2:-29277173 | None:intergenic |
| GTCTCACATCTTATGGTGGC+AGG | 0.412186 | 1.2:-29277744 | None:intergenic |
| CAATTGCAAATATGGCAATA+AGG | 0.413383 | 1.2:-29277901 | None:intergenic |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1.2:-29277933 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1.2:+29275506 | MS.gene53603:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1.2:+29278270 | MS.gene53603:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1.2:+29276418 | MS.gene53603:CDS |
| TTTATATTGTTGCTATATGT+GGG | 0.452638 | 1.2:+29277047 | MS.gene53603:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.453850 | 1.2:-29275577 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1.2:+29275996 | MS.gene53603:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1.2:+29278209 | MS.gene53603:CDS |
| GAAATAGCTCGAATCGGTGC+AGG | 0.476854 | 1.2:+29276684 | MS.gene53603:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1.2:-29275578 | None:intergenic |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1.2:+29278652 | MS.gene53603:CDS |
| TGATAGGCAGAGTGTTCCTC+TGG | 0.490976 | 1.2:+29275485 | MS.gene53603:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1.2:+29277165 | MS.gene53603:CDS |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1.2:+29276406 | MS.gene53603:CDS |
| AAGAAATTGGAAATAGTGGT+TGG | 0.507471 | 1.2:+29277775 | MS.gene53603:CDS |
| ATGGACAAAGTGTTCTACCT+TGG | 0.514469 | 1.2:+29275640 | MS.gene53603:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1.2:-29276495 | None:intergenic |
| TTAGGTGGAGCATTGATGTT+GGG | 0.537476 | 1.2:+29278405 | MS.gene53603:intron |
| GCAGGTGAAATAGCTCGAAT+CGG | 0.538018 | 1.2:+29276678 | MS.gene53603:intron |
| TATGTTGGTGTGCAATCAGA+AGG | 0.545171 | 1.2:+29277313 | MS.gene53603:CDS |
| GAACACTTTGTCCATAATCT+CGG | 0.548664 | 1.2:-29275632 | None:intergenic |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1.2:-29276483 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1.2:-29278252 | None:intergenic |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1.2:+29276422 | MS.gene53603:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1.2:-29276494 | None:intergenic |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1.2:+29276421 | MS.gene53603:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1.2:-29277748 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.582953 | 1.2:+29277249 | MS.gene53603:intron |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1.2:+29278420 | MS.gene53603:CDS |
| GATACAAATACAACTATGCA+AGG | 0.590595 | 1.2:+29278680 | MS.gene53603:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1.2:+29275604 | MS.gene53603:CDS |
| ATTAGGTGGAGCATTGATGT+TGG | 0.592264 | 1.2:+29278404 | MS.gene53603:intron |
| ATAGACTTACAATGAATCCA+AGG | 0.596259 | 1.2:-29275657 | None:intergenic |
| TGCATCTGAGGGATCAGCTG+AGG | 0.596273 | 1.2:+29275431 | MS.gene53603:CDS |
| CAGACGAAGAAACGAAGAAG+AGG | 0.599144 | 1.2:+29276863 | MS.gene53603:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1.2:+29278441 | MS.gene53603:CDS |
| GGTGGAGCATTGATGTTGGG+TGG | 0.602838 | 1.2:+29278408 | MS.gene53603:intron |
| ATCTTCATTGGAGTTAAACA+AGG | 0.603902 | 1.2:+29275518 | MS.gene53603:CDS |
| TTGAAGAATGAGTGCATCTG+AGG | 0.608542 | 1.2:+29275419 | None:intergenic |
| GCATCTGAGGGATCAGCTGA+GGG | 0.618559 | 1.2:+29275432 | MS.gene53603:CDS |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1.2:-29275501 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1.2:+29278427 | MS.gene53603:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1.2:+29276393 | MS.gene53603:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1.2:-29277939 | None:intergenic |
| CAAAGCATCCTAAACTCACA+CGG | 0.641175 | 1.2:-29276049 | None:intergenic |
| TGTTGACACAAATAGTCCAA+AGG | 0.653269 | 1.2:-29277020 | None:intergenic |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1.2:+29275420 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1.2:-29278238 | None:intergenic |
| AAATAGCTCGAATCGGTGCA+GGG | 0.663062 | 1.2:+29276685 | MS.gene53603:CDS |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1.2:-29277140 | None:intergenic |
| GTATGAAGCCATAATTCCTG+AGG | 0.677153 | 1.2:-29277280 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1.2:+29278421 | MS.gene53603:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGAAAAAAATATATTTA+TGG | + | chr1.2:29276583-29276602 | MS.gene53603:intron | 10.0% |
| !!! | ATTATCATTTTTTTCTTAAT+CGG | - | chr1.2:29277429-29277448 | None:intergenic | 10.0% |
| !! | AATAATTAAGAGAAAATAGA+AGG | - | chr1.2:29277237-29277256 | None:intergenic | 15.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | - | chr1.2:29275581-29275600 | None:intergenic | 15.0% |
| !! | TGTAAATTGTATTAATTAGA+AGG | + | chr1.2:29277497-29277516 | MS.gene53603:intron | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1.2:29278612-29278631 | MS.gene53603:intron | 15.0% |
| !!! | AGCTTTTATTTACTTTAAAT+GGG | - | chr1.2:29278003-29278022 | None:intergenic | 15.0% |
| !!! | ATATTATTCATTTTAGTGAT+AGG | + | chr1.2:29275469-29275488 | MS.gene53603:CDS | 15.0% |
| !!! | CTACAATATAAAAGTTTTAA+AGG | - | chr1.2:29275837-29275856 | None:intergenic | 15.0% |
| !!! | TAGCTTTTATTTACTTTAAA+TGG | - | chr1.2:29278004-29278023 | None:intergenic | 15.0% |
| !!! | TTCATTTTCAACTTTATTTT+TGG | - | chr1.2:29278189-29278208 | None:intergenic | 15.0% |
| !! | AAAAATCATCACATCTTAAA+AGG | - | chr1.2:29278346-29278365 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1.2:29278590-29278609 | None:intergenic | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | + | chr1.2:29276502-29276521 | MS.gene53603:intron | 20.0% |
| !! | AACTAATTATTTCAACATGT+AGG | - | chr1.2:29278148-29278167 | None:intergenic | 20.0% |
| !! | ACTAATTATTTCAACATGTA+GGG | - | chr1.2:29278147-29278166 | None:intergenic | 20.0% |
| !! | AGGAATAATGATAAAATCTA+AGG | + | chr1.2:29276906-29276925 | MS.gene53603:intron | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | - | chr1.2:29276497-29276516 | None:intergenic | 20.0% |
| !! | TACATAATCTCATACTATAA+AGG | + | chr1.2:29277854-29277873 | MS.gene53603:intron | 20.0% |
| !! | TACATATTATTATTACTGCA+AGG | + | chr1.2:29276886-29276905 | MS.gene53603:intron | 20.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | - | chr1.2:29275580-29275599 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | - | chr1.2:29276498-29276517 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | + | chr1.2:29276498-29276517 | MS.gene53603:CDS | 20.0% |
| !! | TGCATTATTAAGATACTATA+AGG | - | chr1.2:29278373-29278392 | None:intergenic | 20.0% |
| !! | TGTATACATTCTAATTCATA+TGG | - | chr1.2:29277838-29277857 | None:intergenic | 20.0% |
| !! | TTACAAATATTAACATGAGA+AGG | - | chr1.2:29277656-29277675 | None:intergenic | 20.0% |
| !! | TTTATATTGTTGCTATATGT+GGG | + | chr1.2:29277047-29277066 | MS.gene53603:CDS | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+CGG | + | chr1.2:29277583-29277602 | MS.gene53603:intron | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1.2:29278531-29278550 | None:intergenic | 20.0% |
| !!! | AGAATCATAGTTCTAAATTT+TGG | - | chr1.2:29275860-29275879 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1.2:29278530-29278549 | None:intergenic | 20.0% |
| !!! | TATTTTCTCTTAATTATTGC+AGG | + | chr1.2:29277239-29277258 | MS.gene53603:intron | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | - | chr1.2:29276180-29276199 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1.2:29276455-29276474 | MS.gene53603:CDS | 20.0% |
| !!! | TTTTATATTGTTGCTATATG+TGG | + | chr1.2:29277046-29277065 | MS.gene53603:CDS | 20.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1.2:29276393-29276412 | MS.gene53603:CDS | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1.2:29278589-29278608 | None:intergenic | 25.0% |
| ! | AAAGTATACCTTTGAATGTA+AGG | - | chr1.2:29277176-29277195 | None:intergenic | 25.0% |
| ! | AAGGAATGATGTGATAAATT+AGG | - | chr1.2:29278327-29278346 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | - | chr1.2:29276345-29276364 | None:intergenic | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | + | chr1.2:29276176-29276195 | MS.gene53603:intron | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1.2:29278591-29278610 | None:intergenic | 25.0% |
| ! | CTAATTATTTCAACATGTAG+GGG | - | chr1.2:29278146-29278165 | None:intergenic | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | - | chr1.2:29275979-29275998 | None:intergenic | 25.0% |
| ! | GTTGACTACAATTGATTAAA+AGG | - | chr1.2:29277363-29277382 | None:intergenic | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | - | chr1.2:29276278-29276297 | None:intergenic | 25.0% |
| ! | TACATTGACATGAAAAATTC+TGG | + | chr1.2:29277202-29277221 | MS.gene53603:intron | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1.2:29276831-29276850 | None:intergenic | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | - | chr1.2:29276543-29276562 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1.2:29275987-29276006 | MS.gene53603:intron | 25.0% |
| !! | AAAAACATGGAAGTGTATTA+TGG | - | chr1.2:29276658-29276677 | None:intergenic | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | + | chr1.2:29276019-29276038 | MS.gene53603:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | + | chr1.2:29276021-29276040 | MS.gene53603:CDS | 25.0% |
| !! | CATACATTGTTTTCTTATGT+TGG | + | chr1.2:29277298-29277317 | MS.gene53603:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | + | chr1.2:29276020-29276039 | MS.gene53603:CDS | 25.0% |
| !! | TCAAAAGTGACAATCATTTT+AGG | + | chr1.2:29277557-29277576 | MS.gene53603:intron | 25.0% |
| !! | TCAATATATTTTTCATCGCA+TGG | + | chr1.2:29277116-29277135 | MS.gene53603:CDS | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1.2:29278529-29278548 | None:intergenic | 25.0% |
| !!! | TTATTTTTGGAAAACTGTTG+AGG | - | chr1.2:29278176-29278195 | None:intergenic | 25.0% |
| AAACATCAACTACAACAGTT+AGG | - | chr1.2:29276769-29276788 | None:intergenic | 30.0% | |
| AACCAAGAAATTGGAAATAG+TGG | + | chr1.2:29277771-29277790 | MS.gene53603:CDS | 30.0% | |
| AACCACTATTTCCAATTTCT+TGG | - | chr1.2:29277776-29277795 | None:intergenic | 30.0% | |
| AAGAAATTGGAAATAGTGGT+TGG | + | chr1.2:29277775-29277794 | MS.gene53603:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1.2:29278299-29278318 | MS.gene53603:intron | 30.0% | |
| AATGCACATTTCATACCATT+AGG | + | chr1.2:29278387-29278406 | MS.gene53603:intron | 30.0% | |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1.2:29277143-29277162 | None:intergenic | 30.0% | |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1.2:29277912-29277931 | None:intergenic | 30.0% | |
| ATAGACTTACAATGAATCCA+AGG | - | chr1.2:29275660-29275679 | None:intergenic | 30.0% | |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1.2:29275996-29276015 | MS.gene53603:CDS | 30.0% | |
| ATCTTCATTGGAGTTAAACA+AGG | + | chr1.2:29275518-29275537 | MS.gene53603:CDS | 30.0% | |
| ATGTATACCAGTAACATGTT+TGG | - | chr1.2:29276148-29276167 | None:intergenic | 30.0% | |
| CAATTGATTAAAAGGAGACA+AGG | - | chr1.2:29277355-29277374 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1.2:29277904-29277923 | None:intergenic | 30.0% | |
| CTATTGAAGGGATAACAAAA+TGG | - | chr1.2:29276964-29276983 | None:intergenic | 30.0% | |
| CTTTCATTCACTTGAAGTTA+TGG | + | chr1.2:29276730-29276749 | MS.gene53603:intron | 30.0% | |
| GAGACAAATAACCAAGAAAT+TGG | + | chr1.2:29277762-29277781 | MS.gene53603:CDS | 30.0% | |
| GATACAAATACAACTATGCA+AGG | + | chr1.2:29278680-29278699 | MS.gene53603:CDS | 30.0% | |
| GGAAGAAGTAATATCTTCAT+TGG | + | chr1.2:29275506-29275525 | MS.gene53603:CDS | 30.0% | |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1.2:29277754-29277773 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1.2:29277249-29277268 | MS.gene53603:intron | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | + | chr1.2:29276406-29276425 | MS.gene53603:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1.2:29278271-29278290 | MS.gene53603:CDS | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1.2:29278270-29278289 | MS.gene53603:CDS | 30.0% | |
| ! | AAAATGCTAGTCTCTCAAAT+TGG | - | chr1.2:29275696-29275715 | None:intergenic | 30.0% |
| ! | AAAGAATAATAACTTGCGAG+TGG | + | chr1.2:29277474-29277493 | MS.gene53603:intron | 30.0% |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1.2:29277144-29277163 | MS.gene53603:CDS | 30.0% |
| ! | AGAATGCTAAGATTAGTCAT+TGG | + | chr1.2:29275942-29275961 | MS.gene53603:intron | 30.0% |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1.2:29276821-29276840 | MS.gene53603:CDS | 30.0% |
| ! | GTTGTAGTTGATGTTTACAT+AGG | + | chr1.2:29276773-29276792 | MS.gene53603:intron | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | + | chr1.2:29276836-29276855 | MS.gene53603:CDS | 30.0% |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1.2:29277272-29277291 | MS.gene53603:CDS | 30.0% |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1.2:29275604-29275623 | MS.gene53603:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1.2:29276824-29276843 | MS.gene53603:CDS | 30.0% |
| ! | TGATTGTTTTCATTCATTGG+GGG | + | chr1.2:29276022-29276041 | MS.gene53603:CDS | 30.0% |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1.2:29277907-29277926 | MS.gene53603:CDS | 30.0% |
| ! | TTTGAGAGATTAACTTGAGA+TGG | - | chr1.2:29278058-29278077 | None:intergenic | 30.0% |
| ! | TTTTCTTAATCGGTGTGAAA+TGG | - | chr1.2:29277419-29277438 | None:intergenic | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | + | chr1.2:29276119-29276138 | MS.gene53603:intron | 30.0% |
| !! | TTGATTTACCTGAAAGCATT+TGG | - | chr1.2:29277957-29277976 | None:intergenic | 30.0% |
| !!! | AGTTTTAAAGGTCTCTTTGA+AGG | - | chr1.2:29275825-29275844 | None:intergenic | 30.0% |
| AAATGCAGACATTTCTGTGA+AGG | - | chr1.2:29276987-29277006 | None:intergenic | 35.0% | |
| AAGTGATTGAATGCAAGTAC+TGG | + | chr1.2:29276199-29276218 | MS.gene53603:intron | 35.0% | |
| AATAAGGAAGCCCTATTAAG+AGG | - | chr1.2:29277888-29277907 | None:intergenic | 35.0% | |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1.2:29278585-29278604 | None:intergenic | 35.0% | |
| ACAGTTGTTTAACTGTGGTT+GGG | + | chr1.2:29275726-29275745 | MS.gene53603:intron | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1.2:29278650-29278669 | None:intergenic | 35.0% | |
| AGGTCTCTTATCCTCTTAAT+AGG | + | chr1.2:29277874-29277893 | MS.gene53603:intron | 35.0% | |
| ATAATTTCTCGTGAAGCATG+TGG | - | chr1.2:29276090-29276109 | None:intergenic | 35.0% | |
| ATTAGGATCGTGGTTATAGT+TGG | + | chr1.2:29276614-29276633 | MS.gene53603:intron | 35.0% | |
| ATTTCTGTGAAGGCTATTGA+AGG | - | chr1.2:29276977-29276996 | None:intergenic | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1.2:29277751-29277770 | None:intergenic | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | - | chr1.2:29276486-29276505 | None:intergenic | 35.0% | |
| CTATTTCACCTGCAAAAACA+TGG | - | chr1.2:29276671-29276690 | None:intergenic | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | + | chr1.2:29276418-29276437 | MS.gene53603:CDS | 35.0% | |
| GAACACTTTGTCCATAATCT+CGG | - | chr1.2:29275635-29275654 | None:intergenic | 35.0% | |
| GAAGATATTACTTCTTCCAG+AGG | - | chr1.2:29275504-29275523 | None:intergenic | 35.0% | |
| GATGATATTCCTTACAGCTA+TGG | + | chr1.2:29278209-29278228 | MS.gene53603:CDS | 35.0% | |
| GGTCATATCCTTACATTCAA+AGG | + | chr1.2:29277165-29277184 | MS.gene53603:CDS | 35.0% | |
| GGTCTCTTATCCTCTTAATA+GGG | + | chr1.2:29277875-29277894 | MS.gene53603:intron | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | + | chr1.2:29276597-29276616 | MS.gene53603:intron | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1.2:29278221-29278240 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | + | chr1.2:29276158-29276177 | MS.gene53603:intron | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1.2:29278652-29278671 | MS.gene53603:CDS | 35.0% | |
| TGTTGACACAAATAGTCCAA+AGG | - | chr1.2:29277023-29277042 | None:intergenic | 35.0% | |
| TTAAAAGGAGACAAGGATGA+AGG | - | chr1.2:29277348-29277367 | None:intergenic | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | + | chr1.2:29276379-29276398 | MS.gene53603:CDS | 35.0% | |
| TTTCTGTGAAGGCTATTGAA+GGG | - | chr1.2:29276976-29276995 | None:intergenic | 35.0% | |
| ! | CTTCATGCCCGTTATTATTT+TGG | + | chr1.2:29275570-29275589 | MS.gene53603:CDS | 35.0% |
| ! | TCACAGAAATGTCTGCATTT+TGG | + | chr1.2:29276987-29277006 | MS.gene53603:intron | 35.0% |
| !! | AAATGTCTGCATTTTGGTAC+AGG | + | chr1.2:29276993-29277012 | MS.gene53603:intron | 35.0% |
| !! | ATACACTTCCATGTTTTTGC+AGG | + | chr1.2:29276660-29276679 | MS.gene53603:intron | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1.2:29277946-29277965 | MS.gene53603:CDS | 35.0% |
| AACATCAATGCTCCACCTAA+TGG | - | chr1.2:29278405-29278424 | None:intergenic | 40.0% | |
| AGCTAGATTAGACGTGTGTT+TGG | - | chr1.2:29275902-29275921 | None:intergenic | 40.0% | |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1.2:29278420-29278439 | MS.gene53603:CDS | 40.0% | |
| ATTCATGGCATTCTAGATGG+TGG | + | chr1.2:29276421-29276440 | MS.gene53603:CDS | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1.2:29278586-29278605 | None:intergenic | 40.0% | |
| CACAGTTGTTTAACTGTGGT+TGG | + | chr1.2:29275725-29275744 | MS.gene53603:intron | 40.0% | |
| CAGCAGAATTCAGACAATTG+TGG | + | chr1.2:29275779-29275798 | MS.gene53603:intron | 40.0% | |
| CATCAACTACAACAGTTAGG+TGG | - | chr1.2:29276766-29276785 | None:intergenic | 40.0% | |
| CCACAGTTAAACAACTGTGA+TGG | - | chr1.2:29275724-29275743 | None:intergenic | 40.0% | |
| CCATCACAGTTGTTTAACTG+TGG | + | chr1.2:29275721-29275740 | MS.gene53603:intron | 40.0% | |
| GAAGCATGTGGCATAATTGA+AGG | - | chr1.2:29276078-29276097 | None:intergenic | 40.0% | |
| GACGGTTATTATGAGACAGA+GGG | + | chr1.2:29277601-29277620 | MS.gene53603:intron | 40.0% | |
| GCACATTTCATACCATTAGG+TGG | + | chr1.2:29278390-29278409 | MS.gene53603:intron | 40.0% | |
| GTATGAAGCCATAATTCCTG+AGG | - | chr1.2:29277283-29277302 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1.2:29277313-29277332 | MS.gene53603:CDS | 40.0% | |
| TGAATTCTGCTGCACTATCA+AGG | - | chr1.2:29275771-29275790 | None:intergenic | 40.0% | |
| TGACGGTTATTATGAGACAG+AGG | + | chr1.2:29277600-29277619 | MS.gene53603:intron | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1.2:29278421-29278440 | MS.gene53603:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | + | chr1.2:29276422-29276441 | MS.gene53603:CDS | 40.0% | |
| TTTAACTGTGGTTGGGATTG+CGG | + | chr1.2:29275733-29275752 | MS.gene53603:intron | 40.0% | |
| ! | ATCTGACTTTTCTCGCTACA+TGG | - | chr1.2:29276563-29276582 | None:intergenic | 40.0% |
| ! | ATGGACAAAGTGTTCTACCT+TGG | + | chr1.2:29275640-29275659 | MS.gene53603:CDS | 40.0% |
| ! | CAAAGCATCCTAAACTCACA+CGG | - | chr1.2:29276052-29276071 | None:intergenic | 40.0% |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1.2:29278223-29278242 | MS.gene53603:CDS | 40.0% |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1.2:29277264-29277283 | MS.gene53603:CDS | 40.0% |
| ! | GCATGGTTTTTCCGAGATTA+TGG | + | chr1.2:29275621-29275640 | MS.gene53603:CDS | 40.0% |
| ! | TAGACGTGTGTTTGGTTTCA+CGG | - | chr1.2:29275894-29275913 | None:intergenic | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1.2:29278236-29278255 | MS.gene53603:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1.2:29278235-29278254 | MS.gene53603:CDS | 40.0% |
| !! | ATTAGGTGGAGCATTGATGT+TGG | + | chr1.2:29278404-29278423 | MS.gene53603:intron | 40.0% |
| !! | TTAGGTGGAGCATTGATGTT+GGG | + | chr1.2:29278405-29278424 | MS.gene53603:intron | 40.0% |
| AAATAGCTCGAATCGGTGCA+GGG | + | chr1.2:29276685-29276704 | MS.gene53603:CDS | 45.0% | |
| ACGGACACCAAACATGTTAC+TGG | + | chr1.2:29276138-29276157 | MS.gene53603:intron | 45.0% | |
| CAGACGAAGAAACGAAGAAG+AGG | + | chr1.2:29276863-29276882 | MS.gene53603:CDS | 45.0% | |
| CTCTTCTTCGTTTCTTCGTC+TGG | - | chr1.2:29276865-29276884 | None:intergenic | 45.0% | |
| GCAGGTGAAATAGCTCGAAT+CGG | + | chr1.2:29276678-29276697 | MS.gene53603:intron | 45.0% | |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1.2:29277936-29277955 | None:intergenic | 45.0% | |
| GGTTATTATGAGACAGAGGG+CGG | + | chr1.2:29277604-29277623 | MS.gene53603:intron | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1.2:29278427-29278446 | MS.gene53603:CDS | 45.0% | |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1.2:29278255-29278274 | None:intergenic | 45.0% | |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1.2:29277942-29277961 | None:intergenic | 45.0% |
| ! | TTTTGGTACAGGTGCTCCTT+TGG | + | chr1.2:29277004-29277023 | MS.gene53603:intron | 45.0% |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1.2:29278241-29278260 | None:intergenic | 50.0% | |
| GAAATAGCTCGAATCGGTGC+AGG | + | chr1.2:29276684-29276703 | MS.gene53603:CDS | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1.2:29278441-29278460 | MS.gene53603:CDS | 50.0% | |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1.2:29277747-29277766 | None:intergenic | 50.0% | |
| ! | TGATAGGCAGAGTGTTCCTC+TGG | + | chr1.2:29275485-29275504 | MS.gene53603:CDS | 50.0% |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1.2:29277923-29277942 | MS.gene53603:CDS | 50.0% |
| GCATCTGAGGGATCAGCTGA+GGG | + | chr1.2:29275432-29275451 | MS.gene53603:CDS | 55.0% | |
| GGCACAGTGCATTAGGATCG+TGG | + | chr1.2:29276604-29276623 | MS.gene53603:intron | 55.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | + | chr1.2:29276041-29276060 | MS.gene53603:CDS | 55.0% | |
| TGCATCTGAGGGATCAGCTG+AGG | + | chr1.2:29275431-29275450 | MS.gene53603:CDS | 55.0% | |
| !! | GGTGGAGCATTGATGTTGGG+TGG | + | chr1.2:29278408-29278427 | MS.gene53603:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 29275426 | 29278727 | 29275426 | ID=MS.gene53603 |
| chr1.2 | mRNA | 29275426 | 29278727 | 29275426 | ID=MS.gene53603.t1;Parent=MS.gene53603 |
| chr1.2 | exon | 29275426 | 29275669 | 29275426 | ID=MS.gene53603.t1.exon1;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29275426 | 29275669 | 29275426 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29275994 | 29276070 | 29275994 | ID=MS.gene53603.t1.exon2;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29275994 | 29276070 | 29275994 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29276360 | 29276519 | 29276360 | ID=MS.gene53603.t1.exon3;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29276360 | 29276519 | 29276360 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29276682 | 29276706 | 29276682 | ID=MS.gene53603.t1.exon4;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29276682 | 29276706 | 29276682 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29276795 | 29276884 | 29276795 | ID=MS.gene53603.t1.exon5;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29276795 | 29276884 | 29276795 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29277015 | 29277186 | 29277015 | ID=MS.gene53603.t1.exon6;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29277015 | 29277186 | 29277015 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29277261 | 29277334 | 29277261 | ID=MS.gene53603.t1.exon7;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29277261 | 29277334 | 29277261 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29277740 | 29277809 | 29277740 | ID=MS.gene53603.t1.exon8;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29277740 | 29277809 | 29277740 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29277896 | 29277967 | 29277896 | ID=MS.gene53603.t1.exon9;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29277896 | 29277967 | 29277896 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29278182 | 29278315 | 29278182 | ID=MS.gene53603.t1.exon10;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29278182 | 29278315 | 29278182 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29278409 | 29278482 | 29278409 | ID=MS.gene53603.t1.exon11;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29278409 | 29278482 | 29278409 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| chr1.2 | exon | 29278630 | 29278727 | 29278630 | ID=MS.gene53603.t1.exon12;Parent=MS.gene53603.t1 |
| chr1.2 | CDS | 29278630 | 29278727 | 29278630 | ID=cds.MS.gene53603.t1;Parent=MS.gene53603.t1 |
| Gene Sequence |
| Protein sequence |
