Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53956.t1 | RHN51751.1 | 61 | 866 | 289 | 7 | 1 | 822 | 281 | 1141 | 3.30E-283 | 984.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53956.t1 | Q9UR07 | 30.5 | 715 | 429 | 16 | 2 | 663 | 576 | 1275 | 7.1e-85 | 317.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53956.t1 | A0A396HGT9 | 61.0 | 866 | 289 | 7 | 1 | 822 | 281 | 1141 | 2.4e-283 | 984.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052866 | MS.gene53956 | 0.897348 | 1.53E-76 | -1.69E-46 |
MS.gene052867 | MS.gene53956 | 0.851235 | 1.01E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53956.t1 | MTR_8g465890 | 84.615 | 468 | 21 | 3 | 818 | 1234 | 25 | 492 | 0.0 | 799 |
MS.gene53956.t1 | MTR_2g047855 | 76.201 | 458 | 55 | 5 | 827 | 1234 | 41 | 494 | 0.0 | 692 |
MS.gene53956.t1 | MTR_2g090290 | 45.538 | 437 | 178 | 5 | 827 | 1207 | 42 | 474 | 6.00e-114 | 365 |
MS.gene53956.t1 | MTR_6g045307 | 33.630 | 449 | 242 | 8 | 15 | 433 | 60 | 482 | 6.02e-69 | 252 |
MS.gene53956.t1 | MTR_6g045307 | 36.111 | 144 | 86 | 5 | 505 | 645 | 483 | 623 | 1.37e-17 | 89.4 |
MS.gene53956.t1 | MTR_1g052140 | 32.134 | 389 | 192 | 7 | 3 | 358 | 7 | 356 | 2.15e-52 | 197 |
MS.gene53956.t1 | MTR_8g069570 | 29.250 | 400 | 217 | 8 | 837 | 1179 | 43 | 433 | 6.36e-46 | 173 |
MS.gene53956.t1 | MTR_8g059115 | 29.082 | 392 | 235 | 7 | 870 | 1227 | 13 | 395 | 2.61e-45 | 169 |
MS.gene53956.t1 | MTR_2g013450 | 30.203 | 394 | 214 | 9 | 820 | 1156 | 24 | 413 | 5.97e-41 | 159 |
MS.gene53956.t1 | MTR_1g072300 | 28.283 | 396 | 242 | 6 | 831 | 1189 | 66 | 456 | 9.07e-41 | 159 |
MS.gene53956.t1 | MTR_8g007375 | 28.612 | 353 | 216 | 6 | 868 | 1187 | 12 | 361 | 7.05e-37 | 144 |
MS.gene53956.t1 | MTR_3g099753 | 26.034 | 411 | 235 | 9 | 835 | 1186 | 55 | 455 | 1.17e-36 | 146 |
MS.gene53956.t1 | MTR_3g099753 | 26.034 | 411 | 235 | 9 | 835 | 1186 | 79 | 479 | 1.41e-36 | 146 |
MS.gene53956.t1 | MTR_1g086820 | 27.481 | 393 | 225 | 8 | 833 | 1173 | 47 | 431 | 5.69e-34 | 137 |
MS.gene53956.t1 | MTR_7g029555 | 37.500 | 176 | 108 | 1 | 481 | 656 | 11 | 184 | 5.64e-30 | 120 |
MS.gene53956.t1 | MTR_0003s0410 | 45.385 | 130 | 68 | 2 | 34 | 162 | 614 | 741 | 1.78e-28 | 124 |
MS.gene53956.t1 | MTR_1g050845 | 38.462 | 182 | 109 | 2 | 448 | 628 | 551 | 730 | 3.12e-28 | 123 |
MS.gene53956.t1 | MTR_1g022400 | 30.734 | 218 | 130 | 3 | 829 | 1028 | 66 | 280 | 1.25e-23 | 105 |
MS.gene53956.t1 | MTR_7g089770 | 22.304 | 408 | 247 | 12 | 837 | 1190 | 176 | 567 | 3.07e-20 | 97.1 |
MS.gene53956.t1 | MTR_0001s0660 | 34.337 | 166 | 96 | 4 | 75 | 231 | 292 | 453 | 1.98e-18 | 90.5 |
MS.gene53956.t1 | MTR_4g044373 | 51.389 | 72 | 35 | 0 | 582 | 653 | 51 | 122 | 4.07e-17 | 80.5 |
MS.gene53956.t1 | MTR_8g031520 | 28.125 | 192 | 112 | 5 | 826 | 996 | 113 | 299 | 6.43e-17 | 83.6 |
MS.gene53956.t1 | MTR_6g025750 | 32.934 | 167 | 75 | 6 | 234 | 373 | 19 | 175 | 2.68e-14 | 73.2 |
MS.gene53956.t1 | MTR_1g050750 | 22.304 | 408 | 247 | 13 | 837 | 1190 | 110 | 501 | 1.89e-13 | 75.1 |
MS.gene53956.t1 | MTR_8g068990 | 39.744 | 78 | 47 | 0 | 11 | 88 | 377 | 454 | 2.75e-13 | 74.3 |
MS.gene53956.t1 | MTR_0037s0030 | 50.000 | 76 | 34 | 3 | 567 | 640 | 1 | 74 | 3.94e-13 | 70.5 |
MS.gene53956.t1 | MTR_0011s0100 | 40.000 | 95 | 53 | 3 | 548 | 640 | 1 | 93 | 7.58e-13 | 70.1 |
MS.gene53956.t1 | MTR_4g075270 | 23.502 | 434 | 293 | 16 | 743 | 1164 | 275 | 681 | 2.02e-12 | 72.4 |
MS.gene53956.t1 | MTR_8g031510 | 28.058 | 139 | 99 | 1 | 1061 | 1198 | 1 | 139 | 4.19e-12 | 66.2 |
MS.gene53956.t1 | MTR_4g068360 | 24.793 | 242 | 173 | 5 | 939 | 1179 | 252 | 485 | 4.77e-11 | 67.4 |
MS.gene53956.t1 | MTR_7g091410 | 25.439 | 228 | 158 | 7 | 881 | 1104 | 374 | 593 | 6.60e-11 | 67.4 |
MS.gene53956.t1 | MTR_0113s0060 | 43.373 | 83 | 43 | 3 | 565 | 645 | 226 | 306 | 9.54e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53956.t1 | AT2G20710 | 35.194 | 412 | 215 | 4 | 827 | 1189 | 48 | 456 | 2.31e-80 | 273 |
MS.gene53956.t1 | AT2G20710 | 36.538 | 364 | 196 | 3 | 858 | 1189 | 1 | 361 | 9.89e-75 | 254 |
MS.gene53956.t1 | AT1G60770 | 30.986 | 426 | 239 | 12 | 795 | 1179 | 25 | 436 | 9.37e-53 | 194 |
MS.gene53956.t1 | AT1G02150 | 28.153 | 444 | 257 | 11 | 826 | 1210 | 76 | 516 | 2.45e-46 | 176 |
MS.gene53956.t1 | AT5G27460 | 27.660 | 470 | 262 | 12 | 779 | 1186 | 5 | 458 | 1.08e-41 | 161 |
MS.gene53956.t1 | AT4G21705 | 28.354 | 395 | 224 | 10 | 815 | 1154 | 20 | 410 | 2.27e-41 | 160 |
MS.gene53956.t1 | AT4G01990 | 29.902 | 408 | 226 | 11 | 833 | 1189 | 56 | 454 | 1.33e-40 | 158 |
MS.gene53956.t1 | AT1G28020 | 31.871 | 342 | 167 | 8 | 833 | 1117 | 52 | 384 | 4.78e-36 | 144 |
MS.gene53956.t1 | AT1G28020 | 33.594 | 128 | 65 | 3 | 800 | 913 | 360 | 481 | 1.00e-11 | 69.3 |
MS.gene53956.t1 | AT4G02820 | 24.873 | 394 | 258 | 6 | 837 | 1197 | 96 | 484 | 3.19e-31 | 130 |
MS.gene53956.t1 | AT1G02370 | 27.326 | 344 | 194 | 9 | 819 | 1112 | 75 | 412 | 9.42e-31 | 129 |
MS.gene53956.t1 | AT3G11380 | 31.955 | 266 | 167 | 8 | 852 | 1110 | 95 | 353 | 2.13e-27 | 119 |
MS.gene53956.t1 | AT3G11380 | 34.940 | 166 | 100 | 5 | 835 | 995 | 379 | 541 | 2.00e-14 | 78.2 |
MS.gene53956.t1 | AT5G09450 | 27.928 | 333 | 181 | 7 | 820 | 1098 | 58 | 385 | 1.63e-24 | 108 |
MS.gene53956.t1 | AT1G80270 | 24.286 | 420 | 247 | 12 | 826 | 1190 | 137 | 540 | 3.78e-20 | 96.7 |
MS.gene53956.t1 | AT1G80270 | 24.286 | 420 | 247 | 12 | 826 | 1190 | 137 | 540 | 3.78e-20 | 96.7 |
MS.gene53956.t1 | AT1G80270 | 24.286 | 420 | 247 | 12 | 826 | 1190 | 137 | 540 | 3.78e-20 | 96.7 |
MS.gene53956.t1 | AT1G80270 | 24.286 | 420 | 247 | 12 | 826 | 1190 | 137 | 540 | 3.78e-20 | 96.7 |
MS.gene53956.t1 | AT1G80270 | 24.286 | 420 | 247 | 12 | 826 | 1190 | 137 | 540 | 3.78e-20 | 96.7 |
MS.gene53956.t1 | AT1G28000 | 28.054 | 221 | 129 | 6 | 833 | 1029 | 49 | 263 | 2.90e-18 | 89.0 |
MS.gene53956.t1 | AT1G15480 | 19.660 | 412 | 266 | 8 | 831 | 1190 | 140 | 538 | 3.03e-14 | 77.8 |
MS.gene53956.t1 | AT5G04810 | 24.516 | 310 | 195 | 7 | 902 | 1179 | 345 | 647 | 4.96e-13 | 74.3 |
MS.gene53956.t1 | AT5G04810 | 24.516 | 310 | 195 | 7 | 902 | 1179 | 345 | 647 | 7.95e-13 | 73.9 |
MS.gene53956.t1 | AT5G01110 | 25.000 | 308 | 203 | 11 | 875 | 1168 | 410 | 703 | 7.05e-12 | 70.5 |
MS.gene53956.t1 | AT5G01110 | 25.000 | 308 | 203 | 11 | 875 | 1168 | 382 | 675 | 7.88e-12 | 70.5 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
31139 | gene | 509 | 8115 | 509 | ID=MS.gene53956 |
31139 | mRNA | 509 | 8115 | 509 | ID=MS.gene53956.t1;Parent=MS.gene53956 |
31139 | exon | 7030 | 8115 | 7030 | ID=MS.gene53956.t1.exon1;Parent=MS.gene53956.t1 |
31139 | CDS | 7030 | 8115 | 7030 | ID=cds.MS.gene53956.t1;Parent=MS.gene53956.t1 |
31139 | exon | 5577 | 6956 | 5577 | ID=MS.gene53956.t1.exon2;Parent=MS.gene53956.t1 |
31139 | CDS | 5577 | 6956 | 5577 | ID=cds.MS.gene53956.t1;Parent=MS.gene53956.t1 |
31139 | exon | 5259 | 5351 | 5259 | ID=MS.gene53956.t1.exon3;Parent=MS.gene53956.t1 |
31139 | CDS | 5259 | 5351 | 5259 | ID=cds.MS.gene53956.t1;Parent=MS.gene53956.t1 |
31139 | exon | 1216 | 1746 | 1216 | ID=MS.gene53956.t1.exon4;Parent=MS.gene53956.t1 |
31139 | CDS | 1216 | 1746 | 1216 | ID=cds.MS.gene53956.t1;Parent=MS.gene53956.t1 |
31139 | exon | 509 | 1123 | 509 | ID=MS.gene53956.t1.exon5;Parent=MS.gene53956.t1 |
31139 | CDS | 509 | 1123 | 509 | ID=cds.MS.gene53956.t1;Parent=MS.gene53956.t1 |
Gene Sequence |
Protein sequence |