AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052867


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052867.t1 MTR_8g465890 96.324 408 15 0 1 408 85 492 0.0 812
MS.gene052867.t1 MTR_2g047855 86.098 410 51 3 1 408 89 494 0.0 712
MS.gene052867.t1 MTR_2g090290 51.459 377 173 2 12 381 101 474 2.75e-130 384
MS.gene052867.t1 MTR_8g059115 30.769 403 268 7 1 398 1 397 8.16e-60 200
MS.gene052867.t1 MTR_8g069570 32.958 355 229 5 4 353 83 433 4.19e-58 197
MS.gene052867.t1 MTR_8g007375 31.285 358 239 5 7 361 8 361 4.58e-52 179
MS.gene052867.t1 MTR_2g013450 34.277 318 203 4 15 330 100 413 8.65e-51 178
MS.gene052867.t1 MTR_1g072300 31.148 366 241 6 1 361 95 454 4.03e-48 171
MS.gene052867.t1 MTR_3g099753 29.570 372 239 8 1 360 95 455 2.01e-45 164
MS.gene052867.t1 MTR_3g099753 29.570 372 239 8 1 360 119 479 2.27e-45 164
MS.gene052867.t1 MTR_1g086820 30.747 348 228 6 5 347 92 431 1.60e-44 161
MS.gene052867.t1 MTR_1g022400 29.643 280 189 6 1 276 112 387 1.04e-26 110
MS.gene052867.t1 MTR_7g089770 25.201 373 251 12 1 364 214 567 1.39e-23 103
MS.gene052867.t1 MTR_1g050750 23.784 370 260 9 1 364 148 501 1.31e-17 85.1
MS.gene052867.t1 MTR_1g048080 24.841 314 218 8 46 353 340 641 8.62e-15 77.0
MS.gene052867.t1 MTR_8g031510 28.906 128 90 1 235 361 1 128 1.15e-12 66.2
MS.gene052867.t1 MTR_8g098755 22.713 317 229 8 47 354 240 549 3.34e-12 68.6
MS.gene052867.t1 MTR_8g031520 30.303 132 84 3 11 139 173 299 4.28e-12 67.0
MS.gene052867.t1 MTR_7g091410 23.263 331 211 9 25 316 130 456 9.38e-12 67.0
MS.gene052867.t1 MTR_5g077220 22.222 270 201 8 46 312 466 729 1.04e-11 67.4
MS.gene052867.t1 MTR_7g091410 23.263 331 211 9 25 316 171 497 1.07e-11 67.0
MS.gene052867.t1 MTR_7g091410 22.590 332 214 8 24 316 235 562 1.18e-11 67.0
MS.gene052867.t1 MTR_7g091410 23.193 332 212 9 24 316 374 701 1.21e-11 67.0
MS.gene052867.t1 MTR_2g096880 20.882 340 259 5 13 347 113 447 1.51e-11 66.2
MS.gene052867.t1 MTR_7g066990 20.552 326 245 8 18 338 194 510 3.74e-11 65.5
MS.gene052867.t1 MTR_3g033040 24.280 243 176 5 36 275 195 432 8.37e-11 63.9
MS.gene052867.t1 MTR_3g033040 24.280 243 176 5 36 275 195 432 9.06e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052867.t1 AT2G20710 39.835 364 215 2 1 363 1 361 1.07e-97 297
MS.gene052867.t1 AT2G20710 39.835 364 215 2 1 363 96 456 2.87e-96 296
MS.gene052867.t1 AT1G60770 34.637 358 222 7 4 353 83 436 5.33e-63 210
MS.gene052867.t1 AT1G02150 31.877 389 250 8 7 384 132 516 7.73e-58 197
MS.gene052867.t1 AT5G27460 32.162 370 234 7 1 360 96 458 1.30e-52 183
MS.gene052867.t1 AT4G21705 32.704 318 206 5 15 328 97 410 1.10e-49 175
MS.gene052867.t1 AT4G01990 31.507 365 242 5 5 366 101 460 8.02e-47 167
MS.gene052867.t1 AT1G28020 34.323 303 181 5 1 294 94 387 3.15e-43 158
MS.gene052867.t1 AT4G02820 27.151 372 264 5 1 371 119 484 1.14e-40 151
MS.gene052867.t1 AT1G02370 31.119 286 190 5 4 286 131 412 3.55e-38 145
MS.gene052867.t1 AT5G09450 30.682 264 178 4 12 272 124 385 7.22e-25 105
MS.gene052867.t1 AT3G11380 28.571 287 163 7 4 284 103 353 1.31e-24 106
MS.gene052867.t1 AT3G11380 34.752 141 86 4 1 138 404 541 6.22e-12 67.8
MS.gene052867.t1 AT1G80270 26.359 368 246 9 5 364 190 540 3.93e-23 102
MS.gene052867.t1 AT1G80270 26.359 368 246 9 5 364 190 540 3.93e-23 102
MS.gene052867.t1 AT1G80270 26.359 368 246 9 5 364 190 540 3.93e-23 102
MS.gene052867.t1 AT1G80270 26.359 368 246 9 5 364 190 540 3.93e-23 102
MS.gene052867.t1 AT1G80270 26.359 368 246 9 5 364 190 540 3.93e-23 102
MS.gene052867.t1 AT2G20720 28.826 281 167 11 88 353 1 263 1.12e-22 97.8
MS.gene052867.t1 AT5G04810 25.962 312 219 7 45 353 345 647 1.67e-18 88.6
MS.gene052867.t1 AT5G04810 25.962 312 219 7 45 353 345 647 1.75e-18 88.2
MS.gene052867.t1 AT1G28000 28.761 226 146 6 9 225 99 318 5.92e-18 85.5
MS.gene052867.t1 AT1G15480 21.972 355 262 6 13 364 196 538 3.08e-15 78.2
MS.gene052867.t1 AT2G01740 20.536 336 259 5 18 350 63 393 5.86e-14 73.9
MS.gene052867.t1 AT1G62590 22.222 333 233 8 43 365 259 575 7.12e-12 67.8
MS.gene052867.t1 AT1G62590 22.222 333 233 8 43 365 259 575 7.12e-12 67.8
MS.gene052867.t1 AT1G63330 22.253 364 246 10 12 365 164 500 2.33e-11 65.9
MS.gene052867.t1 AT1G63330 22.253 364 246 10 12 365 164 500 2.33e-11 65.9
MS.gene052867.t1 AT1G63330 22.253 364 246 10 12 365 164 500 2.33e-11 65.9
MS.gene052867.t1 AT5G61990 21.994 341 226 7 70 374 440 776 3.01e-11 65.9
MS.gene052867.t1 AT1G12300 22.507 351 239 10 47 388 276 602 5.06e-11 65.1
MS.gene052867.t1 AT3G15590 23.018 391 282 9 6 390 204 581 9.24e-11 64.3
MS.gene052867.t1 AT3G15590 23.018 391 282 9 6 390 204 581 9.24e-11 64.3

Find 79 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAAGTCTTGTTCATTAT+TGG 0.158338 4.2:-60172399 None:intergenic
AATATCTGCAAAAGCTTAAA+TGG 0.198675 4.2:+60172809 MS.gene052867:CDS
ATACATGCAGCAAAAGTAAA+TGG 0.236659 4.2:-60173163 None:intergenic
AGAAACCTTCATTTATTATC+AGG 0.259070 4.2:+60172188 MS.gene052867:CDS
GTAAATTAGATGGAAGAATA+TGG 0.272444 4.2:+60173038 MS.gene052867:CDS
AGGATGATGTGTATAGAATT+TGG 0.279819 4.2:+60172786 MS.gene052867:CDS
GTATGCTGCTATTGGGAAAA+AGG 0.284030 4.2:+60172766 MS.gene052867:CDS
TCAAAAGATTTCAAGGTCTA+TGG 0.286344 4.2:+60172296 MS.gene052867:CDS
CTATCAACGCCTTGTCAAAT+TGG 0.291657 4.2:-60172673 None:intergenic
CTAACTAAGTATGCTGCTAT+TGG 0.295443 4.2:+60172758 MS.gene052867:CDS
AAAAGAGATGGTAAATTAGA+TGG 0.307752 4.2:+60173028 MS.gene052867:CDS
TACAATGAAGAAAGCAATAT+TGG 0.324291 4.2:+60173114 MS.gene052867:CDS
AGATGAGATGGAGAAGTTAT+TGG 0.339068 4.2:+60172571 MS.gene052867:CDS
ACACACTTCAAAAGATTTCA+AGG 0.352580 4.2:+60172289 MS.gene052867:CDS
ATTCTAGAGGAATGGGAATC+TGG 0.360043 4.2:+60172905 MS.gene052867:CDS
CATGAAAGAAAAGAGAGATT+TGG 0.367770 4.2:+60173192 MS.gene052867:CDS
GCGATACGTCTCACCTTGAT+AGG 0.373282 4.2:+60172218 MS.gene052867:CDS
GAGTTGGCATTGGAGATTCT+TGG 0.376634 4.2:+60173214 MS.gene052867:CDS
CTATTATAAGTATAACGATA+TGG 0.383667 4.2:+60173078 MS.gene052867:CDS
TTCTGTTAAAGCTCTATTCT+CGG 0.395487 4.2:+60172435 MS.gene052867:CDS
GGAGAAGTTATTGGCGAAGA+TGG 0.400331 4.2:+60172580 MS.gene052867:CDS
GAGAGATTTGGAGTTGGCAT+TGG 0.400920 4.2:+60173204 MS.gene052867:CDS
AAATCTGAACAGTTGATTAG+AGG 0.401555 4.2:+60172704 MS.gene052867:CDS
TCGAATCTAAATGACATTGA+TGG 0.409997 4.2:+60172872 MS.gene052867:CDS
ATCACAACATAACTTTGAAC+TGG 0.418385 4.2:+60172609 MS.gene052867:CDS
AGTTGGCATTGGAGATTCTT+GGG 0.423822 4.2:+60173215 MS.gene052867:CDS
GTTAGTGCTTATTGTAAGAA+TGG 0.429380 4.2:+60172965 MS.gene052867:CDS
TAAGCACTAACCATCACATT+TGG 0.434733 4.2:-60172953 None:intergenic
TGGAAGAATATGGGATCGTT+TGG 0.441147 4.2:+60173048 MS.gene052867:CDS
TAACTAAGTATGCTGCTATT+GGG 0.452411 4.2:+60172759 MS.gene052867:CDS
CTTGGGACGTGTAGGGAACT+AGG 0.453871 4.2:+60173232 MS.gene052867:CDS
TAAGAATGGTATGTTGGAAA+AGG 0.454505 4.2:+60172979 MS.gene052867:CDS
CTGAGACGATTCTAGAGGAA+TGG 0.485090 4.2:+60172897 MS.gene052867:CDS
ACGTATTCTGCTGTTGCTGA+TGG 0.485242 4.2:+60172635 MS.gene052867:CDS
TGACATTAACATAGAAATGT+AGG 0.489387 4.2:-60172846 None:intergenic
ACAGTTCCACACTTACTAGT+TGG 0.490146 4.2:+60172519 MS.gene052867:CDS
AGAAAAGAGAGATTTGGAGT+TGG 0.495030 4.2:+60173198 MS.gene052867:CDS
ACATAGAAATGTAGGTTGAA+TGG 0.502220 4.2:-60172838 None:intergenic
TACATGCAGCAAAAGTAAAT+GGG 0.502567 4.2:-60173162 None:intergenic
TGAGACGATTCTAGAGGAAT+GGG 0.505779 4.2:+60172898 MS.gene052867:CDS
TAAATTAGATGGAAGAATAT+GGG 0.509804 4.2:+60173039 MS.gene052867:CDS
TGGAGATTCTTGGGACGTGT+AGG 0.512268 4.2:+60173224 MS.gene052867:CDS
GAAAAGGCAGAAGCATATGT+TGG 0.512700 4.2:+60172995 MS.gene052867:CDS
CACAATACAACTCTGTTGAG+AGG 0.513284 4.2:+60172339 MS.gene052867:CDS
TTCCAATAATGAACAAGACT+TGG 0.528671 4.2:+60172397 MS.gene052867:CDS
ACCGCGGACTTTACCTATCA+AGG 0.528914 4.2:-60172231 None:intergenic
TACTAGTAACATAGATGAGA+TGG 0.529015 4.2:+60172559 MS.gene052867:CDS
TTAAAGCTCTATTCTCGGAC+AGG 0.530539 4.2:+60172440 MS.gene052867:CDS
GGAGATTCTTGGGACGTGTA+GGG 0.531898 4.2:+60173225 MS.gene052867:CDS
GACAGGCCAACATGAGAAGT+TGG 0.534670 4.2:+60172457 MS.gene052867:CDS
GCTGATGGATATATTAAAGT+TGG 0.546261 4.2:+60172650 MS.gene052867:CDS
GCAGCAAAAGTAAATGGGTA+AGG 0.548795 4.2:-60173157 None:intergenic
ATTGATGAAGTGCCGGTGGA+TGG 0.549081 4.2:+60173358 MS.gene052867:CDS
TAGAAATGTAGGTTGAATGG+TGG 0.556781 4.2:-60172835 None:intergenic
TATCTCCTGATAATAAATGA+AGG 0.557018 4.2:-60172193 None:intergenic
TATTGGCAAGTCCACAAGGA+TGG 0.562473 4.2:+60173131 MS.gene052867:CDS
AAAAGGCAGAAGCATATGTT+GGG 0.563161 4.2:+60172996 MS.gene052867:CDS
ATATGGGATCGTTTGGCGCA+TGG 0.569764 4.2:+60173055 MS.gene052867:CDS
AATGCATTGAAACTATTGAA+AGG 0.583348 4.2:+60173319 MS.gene052867:CDS
TAAAGTTGGCCAATTTGACA+AGG 0.588172 4.2:+60172664 MS.gene052867:CDS
GAGCAACCAACTTCTCATGT+TGG 0.593793 4.2:-60172463 None:intergenic
TTATTGTAAGAATGGTATGT+TGG 0.595840 4.2:+60172973 MS.gene052867:CDS
GGGTAAGGTTTCCATCCTTG+TGG 0.602793 4.2:-60173142 None:intergenic
AGAAATGTAGGTTGAATGGT+GGG 0.604581 4.2:-60172834 None:intergenic
GCAATATTGGCAAGTCCACA+AGG 0.607044 4.2:+60173127 MS.gene052867:CDS
ATAATTTATCAACTCATCAC+AGG 0.610232 4.2:-60173272 None:intergenic
TCTGAGGATTGATGAAGTGC+CGG 0.623064 4.2:+60173351 MS.gene052867:CDS
ACAATACAACTCTGTTGAGA+GGG 0.624448 4.2:+60172340 MS.gene052867:CDS
TGAAAGGAGATTATCATCTG+AGG 0.625770 4.2:+60173335 MS.gene052867:CDS
TGTTGCTCCTCTCCATCCAC+CGG 0.627694 4.2:-60173370 None:intergenic
TGTCAGAATTCCAAATGTGA+TGG 0.654148 4.2:+60172943 MS.gene052867:CDS
ATTGAGCCAACTAGTAAGTG+TGG 0.661729 4.2:-60172525 None:intergenic
AGGCAGAAGCATATGTTGGG+AGG 0.666399 4.2:+60172999 MS.gene052867:CDS
GAGGATTGATGAAGTGCCGG+TGG 0.670912 4.2:+60173354 MS.gene052867:CDS
TGGAGCTGAGACGATTCTAG+AGG 0.681337 4.2:+60172892 MS.gene052867:CDS
TGAAGTGCCGGTGGATGGAG+AGG 0.684802 4.2:+60173363 MS.gene052867:CDS
GAGTTGATAAATTATGTGCA+AGG 0.689053 4.2:+60173280 MS.gene052867:CDS
TCTCTGCTTGATCTAGACCG+CGG 0.698359 4.2:-60172247 None:intergenic
ACCTTGATAGGTAAAGTCCG+CGG 0.730817 4.2:+60172230 MS.gene052867:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTATAAGTATAACGATA+TGG + chr4.2:60173078-60173097 MS.gene052867:CDS 20.0%
!! TAAATTAGATGGAAGAATAT+GGG + chr4.2:60173039-60173058 MS.gene052867:CDS 20.0%
! AAAAGAGATGGTAAATTAGA+TGG + chr4.2:60173028-60173047 MS.gene052867:CDS 25.0%
! AATATCTGCAAAAGCTTAAA+TGG + chr4.2:60172809-60172828 MS.gene052867:CDS 25.0%
! AATGCATTGAAACTATTGAA+AGG + chr4.2:60173319-60173338 MS.gene052867:CDS 25.0%
! AGAAACCTTCATTTATTATC+AGG + chr4.2:60172188-60172207 MS.gene052867:CDS 25.0%
! ATAATTTATCAACTCATCAC+AGG - chr4.2:60173275-60173294 None:intergenic 25.0%
! GTAAATTAGATGGAAGAATA+TGG + chr4.2:60173038-60173057 MS.gene052867:CDS 25.0%
! TACAATGAAGAAAGCAATAT+TGG + chr4.2:60173114-60173133 MS.gene052867:CDS 25.0%
! TATCTCCTGATAATAAATGA+AGG - chr4.2:60172196-60172215 None:intergenic 25.0%
! TGACATTAACATAGAAATGT+AGG - chr4.2:60172849-60172868 None:intergenic 25.0%
! TTATTGTAAGAATGGTATGT+TGG + chr4.2:60172973-60172992 MS.gene052867:CDS 25.0%
AAATCTGAACAGTTGATTAG+AGG + chr4.2:60172704-60172723 MS.gene052867:CDS 30.0%
ACACACTTCAAAAGATTTCA+AGG + chr4.2:60172289-60172308 MS.gene052867:CDS 30.0%
AGGATGATGTGTATAGAATT+TGG + chr4.2:60172786-60172805 MS.gene052867:CDS 30.0%
ATACATGCAGCAAAAGTAAA+TGG - chr4.2:60173166-60173185 None:intergenic 30.0%
ATCACAACATAACTTTGAAC+TGG + chr4.2:60172609-60172628 MS.gene052867:CDS 30.0%
CATGAAAGAAAAGAGAGATT+TGG + chr4.2:60173192-60173211 MS.gene052867:CDS 30.0%
GTTAGTGCTTATTGTAAGAA+TGG + chr4.2:60172965-60172984 MS.gene052867:CDS 30.0%
TAACTAAGTATGCTGCTATT+GGG + chr4.2:60172759-60172778 MS.gene052867:CDS 30.0%
TAAGAATGGTATGTTGGAAA+AGG + chr4.2:60172979-60172998 MS.gene052867:CDS 30.0%
TACATGCAGCAAAAGTAAAT+GGG - chr4.2:60173165-60173184 None:intergenic 30.0%
TACTAGTAACATAGATGAGA+TGG + chr4.2:60172559-60172578 MS.gene052867:CDS 30.0%
TCAAAAGATTTCAAGGTCTA+TGG + chr4.2:60172296-60172315 MS.gene052867:CDS 30.0%
TCGAATCTAAATGACATTGA+TGG + chr4.2:60172872-60172891 MS.gene052867:CDS 30.0%
TTCCAATAATGAACAAGACT+TGG + chr4.2:60172397-60172416 MS.gene052867:CDS 30.0%
TTCTGTTAAAGCTCTATTCT+CGG + chr4.2:60172435-60172454 MS.gene052867:CDS 30.0%
! ACATAGAAATGTAGGTTGAA+TGG - chr4.2:60172841-60172860 None:intergenic 30.0%
! GCTGATGGATATATTAAAGT+TGG + chr4.2:60172650-60172669 MS.gene052867:CDS 30.0%
!! GAGTTGATAAATTATGTGCA+AGG + chr4.2:60173280-60173299 MS.gene052867:CDS 30.0%
!! TACCAAGTCTTGTTCATTAT+TGG - chr4.2:60172402-60172421 None:intergenic 30.0%
!!! TTGAAATCTTTTGAAGTGTG+TGG - chr4.2:60172290-60172309 None:intergenic 30.0%
ACAATACAACTCTGTTGAGA+GGG + chr4.2:60172340-60172359 MS.gene052867:CDS 35.0%
AGATGAGATGGAGAAGTTAT+TGG + chr4.2:60172571-60172590 MS.gene052867:CDS 35.0%
CTAACTAAGTATGCTGCTAT+TGG + chr4.2:60172758-60172777 MS.gene052867:CDS 35.0%
TAAAGTTGGCCAATTTGACA+AGG + chr4.2:60172664-60172683 MS.gene052867:CDS 35.0%
TAAGCACTAACCATCACATT+TGG - chr4.2:60172956-60172975 None:intergenic 35.0%
TGAAAGGAGATTATCATCTG+AGG + chr4.2:60173335-60173354 MS.gene052867:CDS 35.0%
TGTCAGAATTCCAAATGTGA+TGG + chr4.2:60172943-60172962 MS.gene052867:CDS 35.0%
! AAAAGGCAGAAGCATATGTT+GGG + chr4.2:60172996-60173015 MS.gene052867:CDS 35.0%
! AGAAAAGAGAGATTTGGAGT+TGG + chr4.2:60173198-60173217 MS.gene052867:CDS 35.0%
! AGAAATGTAGGTTGAATGGT+GGG - chr4.2:60172837-60172856 None:intergenic 35.0%
! TAGAAATGTAGGTTGAATGG+TGG - chr4.2:60172838-60172857 None:intergenic 35.0%
ACAGTTCCACACTTACTAGT+TGG + chr4.2:60172519-60172538 MS.gene052867:CDS 40.0%
ATTGAGCCAACTAGTAAGTG+TGG - chr4.2:60172528-60172547 None:intergenic 40.0%
CACAATACAACTCTGTTGAG+AGG + chr4.2:60172339-60172358 MS.gene052867:CDS 40.0%
CTATCAACGCCTTGTCAAAT+TGG - chr4.2:60172676-60172695 None:intergenic 40.0%
GCAGCAAAAGTAAATGGGTA+AGG - chr4.2:60173160-60173179 None:intergenic 40.0%
GTATGCTGCTATTGGGAAAA+AGG + chr4.2:60172766-60172785 MS.gene052867:CDS 40.0%
TGGAAGAATATGGGATCGTT+TGG + chr4.2:60173048-60173067 MS.gene052867:CDS 40.0%
TTAAAGCTCTATTCTCGGAC+AGG + chr4.2:60172440-60172459 MS.gene052867:CDS 40.0%
! AGTTGGCATTGGAGATTCTT+GGG + chr4.2:60173215-60173234 MS.gene052867:CDS 40.0%
! ATTCTAGAGGAATGGGAATC+TGG + chr4.2:60172905-60172924 MS.gene052867:CDS 40.0%
! GAAAAGGCAGAAGCATATGT+TGG + chr4.2:60172995-60173014 MS.gene052867:CDS 40.0%
! TGAGACGATTCTAGAGGAAT+GGG + chr4.2:60172898-60172917 MS.gene052867:CDS 40.0%
!! GGGAGGCTTTTAAAAAGAGA+TGG + chr4.2:60173016-60173035 MS.gene052867:CDS 40.0%
ACCTTGATAGGTAAAGTCCG+CGG + chr4.2:60172230-60172249 MS.gene052867:CDS 45.0%
ACGTATTCTGCTGTTGCTGA+TGG + chr4.2:60172635-60172654 MS.gene052867:CDS 45.0%
GAGCAACCAACTTCTCATGT+TGG - chr4.2:60172466-60172485 None:intergenic 45.0%
GCAATATTGGCAAGTCCACA+AGG + chr4.2:60173127-60173146 MS.gene052867:CDS 45.0%
GGAGAAGTTATTGGCGAAGA+TGG + chr4.2:60172580-60172599 MS.gene052867:CDS 45.0%
TATTGGCAAGTCCACAAGGA+TGG + chr4.2:60173131-60173150 MS.gene052867:CDS 45.0%
TCTGAGGATTGATGAAGTGC+CGG + chr4.2:60173351-60173370 MS.gene052867:CDS 45.0%
! CTGAGACGATTCTAGAGGAA+TGG + chr4.2:60172897-60172916 MS.gene052867:CDS 45.0%
! GAGAGATTTGGAGTTGGCAT+TGG + chr4.2:60173204-60173223 MS.gene052867:CDS 45.0%
! GAGTTGGCATTGGAGATTCT+TGG + chr4.2:60173214-60173233 MS.gene052867:CDS 45.0%
ACCGCGGACTTTACCTATCA+AGG - chr4.2:60172234-60172253 None:intergenic 50.0%
ATATGGGATCGTTTGGCGCA+TGG + chr4.2:60173055-60173074 MS.gene052867:CDS 50.0%
GACAGGCCAACATGAGAAGT+TGG + chr4.2:60172457-60172476 MS.gene052867:CDS 50.0%
GCGATACGTCTCACCTTGAT+AGG + chr4.2:60172218-60172237 MS.gene052867:CDS 50.0%
GGAGATTCTTGGGACGTGTA+GGG + chr4.2:60173225-60173244 MS.gene052867:CDS 50.0%
GGGTAAGGTTTCCATCCTTG+TGG - chr4.2:60173145-60173164 None:intergenic 50.0%
TCTCTGCTTGATCTAGACCG+CGG - chr4.2:60172250-60172269 None:intergenic 50.0%
TGGAGATTCTTGGGACGTGT+AGG + chr4.2:60173224-60173243 MS.gene052867:CDS 50.0%
TGGAGCTGAGACGATTCTAG+AGG + chr4.2:60172892-60172911 MS.gene052867:CDS 50.0%
! AGGCAGAAGCATATGTTGGG+AGG + chr4.2:60172999-60173018 MS.gene052867:CDS 50.0%
!! ATTGATGAAGTGCCGGTGGA+TGG + chr4.2:60173358-60173377 MS.gene052867:CDS 50.0%
CTTGGGACGTGTAGGGAACT+AGG + chr4.2:60173232-60173251 MS.gene052867:CDS 55.0%
TGTTGCTCCTCTCCATCCAC+CGG - chr4.2:60173373-60173392 None:intergenic 55.0%
!! GAGGATTGATGAAGTGCCGG+TGG + chr4.2:60173354-60173373 MS.gene052867:CDS 55.0%
!! TGAAGTGCCGGTGGATGGAG+AGG + chr4.2:60173363-60173382 MS.gene052867:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 60172176 60173402 60172176 ID=MS.gene052867
chr4.2 mRNA 60172176 60173402 60172176 ID=MS.gene052867.t1;Parent=MS.gene052867
chr4.2 exon 60172176 60173402 60172176 ID=MS.gene052867.t1.exon1;Parent=MS.gene052867.t1
chr4.2 CDS 60172176 60173402 60172176 ID=cds.MS.gene052867.t1;Parent=MS.gene052867.t1
Gene Sequence

>MS.gene052867

ATGAGCAATGAAAGAAACCTTCATTTATTATCAGGAGATATTGCGATACGTCTCACCTTGATAGGTAAAGTCCGCGGTCTAGATCAAGCAGAGAAATATTTTAACAGTGTTCCACACACTTCAAAAGATTTCAAGGTCTATGGTGCTCTGTTGAATTGCTATGCACAATACAACTCTGTTGAGAGGGCAGAACTTATCATGAAGACATTAAAAGAGTCTTCTTCCAATAATGAACAAGACTTGGTAGTGAGTTATCATGTTCTGTTAAAGCTCTATTCTCGGACAGGCCAACATGAGAAGTTGGTTGCTCTGATGAAAGAAATGAAAGAGAAGAAAATGTGCAACAGTTCCACACTTACTAGTTGGCTCAATGCTTATGCGATTACTAGTAACATAGATGAGATGGAGAAGTTATTGGCGAAGATGGAAGTTGATCACAACATAACTTTGAACTGGCTCACGTATTCTGCTGTTGCTGATGGATATATTAAAGTTGGCCAATTTGACAAGGCGTTGATAGTGTTGAAAAAATCTGAACAGTTGATTAGAGGAAAGTCGAAGAGAGCTGTGTATCAATCTCTTCTAACTAAGTATGCTGCTATTGGGAAAAAGGATGATGTGTATAGAATTTGGAATATCTGCAAAAGCTTAAATGGTTCCCACCATTCAACCTACATTTCTATGTTAATGTCATTATCGAATCTAAATGACATTGATGGAGCTGAGACGATTCTAGAGGAATGGGAATCTGGAAATACATGCTTTGATGTCAGAATTCCAAATGTGATGGTTAGTGCTTATTGTAAGAATGGTATGTTGGAAAAGGCAGAAGCATATGTTGGGAGGCTTTTAAAAAGAGATGGTAAATTAGATGGAAGAATATGGGATCGTTTGGCGCATGGCTATTATAAGTATAACGATATGGATAAAGCAGTTCATACAATGAAGAAAGCAATATTGGCAAGTCCACAAGGATGGAAACCTTACCCATTTACTTTTGCTGCATGTATTGATCACATGAAAGAAAAGAGAGATTTGGAGTTGGCATTGGAGATTCTTGGGACGTGTAGGGAACTAGGTCATTTCTCTCAAGCTACCTGTGATGAGTTGATAAATTATGTGCAAGGTGAAATCTCAGAAACAAATGCATTGAAACTATTGAAAGGAGATTATCATCTGAGGATTGATGAAGTGCCGGTGGATGGAGAGGAGCAACATGAAATGTAG

Protein sequence

>MS.gene052867.t1

MSNERNLHLLSGDIAIRLTLIGKVRGLDQAEKYFNSVPHTSKDFKVYGALLNCYAQYNSVERAELIMKTLKESSSNNEQDLVVSYHVLLKLYSRTGQHEKLVALMKEMKEKKMCNSSTLTSWLNAYAITSNIDEMEKLLAKMEVDHNITLNWLTYSAVADGYIKVGQFDKALIVLKKSEQLIRGKSKRAVYQSLLTKYAAIGKKDDVYRIWNICKSLNGSHHSTYISMLMSLSNLNDIDGAETILEEWESGNTCFDVRIPNVMVSAYCKNGMLEKAEAYVGRLLKRDGKLDGRIWDRLAHGYYKYNDMDKAVHTMKKAILASPQGWKPYPFTFAACIDHMKEKRDLELALEILGTCRELGHFSQATCDELINYVQGEISETNALKLLKGDYHLRIDEVPVDGEEQHEM