Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54111.t1 | RHN76863.1 | 79.3 | 58 | 12 | 0 | 1 | 58 | 304 | 361 | 2.40E-19 | 104 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54111.t1 | A0A396JKP2 | 79.3 | 58 | 12 | 0 | 1 | 58 | 304 | 361 | 1.7e-19 | 104.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051492 | MS.gene54111 | 0.819111 | 1.38E-52 | -1.69E-46 |
| MS.gene051493 | MS.gene54111 | 0.802079 | 6.65E-49 | -1.69E-46 |
| MS.gene058477 | MS.gene54111 | 0.820564 | 6.42E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 12 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTGTAACAACACTTTT+GGG | + | 10026:1810-1829 | MS.gene54111:CDS | 25.0% |
| !! | TGTTACAATTTGCTTTACTT+AGG | - | 10026:1802-1821 | MS.gene54111:intergenic | 25.0% |
| ATTTGATATGCATTTCCATC+AGG | - | 10026:1902-1921 | MS.gene54110:intergenic | 30.0% | |
| ! | GCAAATTGTAACAACACTTT+TGG | + | 10026:1809-1828 | MS.gene54111:CDS | 30.0% |
| TTTGGAAATGGAACAAAGCT+AGG | + | 10026:1863-1882 | MS.gene54111:CDS | 35.0% | |
| CCATTTCCAAATTGTCCGAT+CGG | - | 10026:1854-1873 | MS.gene54110:intergenic | 40.0% | |
| GAAATGGAACAAAGCTAGGA+GGG | + | 10026:1867-1886 | MS.gene54111:CDS | 40.0% | |
| !! | TACACTTGTTTCTGTCCGAT+CGG | + | 10026:1836-1855 | MS.gene54111:CDS | 40.0% |
| CCGATCGGACAATTTGGAAA+TGG | + | 10026:1851-1870 | MS.gene54111:CDS | 45.0% | |
| GGAAATGGAACAAAGCTAGG+AGG | + | 10026:1866-1885 | MS.gene54111:CDS | 45.0% | |
| TTCTGTCCGATCGGACAATT+TGG | + | 10026:1845-1864 | MS.gene54111:CDS | 45.0% | |
| ! | GGAGGGTGCAAAGTACCTGA+TGG | + | 10026:1884-1903 | MS.gene54111:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10026 | gene | 1765 | 1941 | 1765 | ID=MS.gene54111 |
| 10026 | mRNA | 1765 | 1941 | 1765 | ID=MS.gene54111.t1;Parent=MS.gene54111 |
| 10026 | exon | 1765 | 1941 | 1765 | ID=MS.gene54111.t1.exon1;Parent=MS.gene54111.t1 |
| 10026 | CDS | 1765 | 1941 | 1765 | ID=cds.MS.gene54111.t1;Parent=MS.gene54111.t1 |
| Gene Sequence |
| Protein sequence |
