Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54200.t1 | XP_003611408.1 | 98 | 543 | 11 | 0 | 1 | 543 | 1 | 543 | 0.00E+00 | 1104 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54200.t1 | O23553 | 68.1 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 1.3e-221 | 770.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54200.t1 | G7JYN2 | 98.0 | 543 | 11 | 0 | 1 | 543 | 1 | 543 | 0.0e+00 | 1104.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051064 | MS.gene54200 | 0.848374 | 6.39E-60 | -1.69E-46 |
MS.gene052077 | MS.gene54200 | 0.801795 | 7.61E-49 | -1.69E-46 |
MS.gene059511 | MS.gene54200 | 0.83607 | 1.16E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54200.t1 | MTR_5g013620 | 97.974 | 543 | 11 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1121 |
MS.gene54200.t1 | MTR_5g013640 | 91.743 | 545 | 41 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1042 |
MS.gene54200.t1 | MTR_4g099110 | 73.985 | 542 | 123 | 5 | 1 | 535 | 1 | 531 | 0.0 | 835 |
MS.gene54200.t1 | MTR_6g477780 | 63.158 | 342 | 114 | 2 | 181 | 510 | 10 | 351 | 2.12e-165 | 474 |
MS.gene54200.t1 | MTR_4g045667 | 49.885 | 435 | 201 | 4 | 87 | 507 | 11 | 442 | 3.54e-156 | 455 |
MS.gene54200.t1 | MTR_2g089030 | 50.000 | 436 | 201 | 4 | 86 | 507 | 83 | 515 | 2.03e-149 | 441 |
MS.gene54200.t1 | MTR_8g099775 | 45.824 | 467 | 232 | 7 | 90 | 543 | 80 | 538 | 7.63e-140 | 415 |
MS.gene54200.t1 | MTR_7g077410 | 46.501 | 443 | 220 | 6 | 86 | 515 | 262 | 700 | 2.16e-123 | 378 |
MS.gene54200.t1 | MTR_2g020240 | 38.581 | 451 | 267 | 4 | 63 | 508 | 57 | 502 | 9.26e-106 | 327 |
MS.gene54200.t1 | MTR_5g026210 | 37.797 | 463 | 270 | 8 | 59 | 510 | 189 | 644 | 1.44e-103 | 325 |
MS.gene54200.t1 | MTR_2g020240 | 39.024 | 369 | 216 | 3 | 143 | 507 | 3 | 366 | 1.06e-89 | 281 |
MS.gene54200.t1 | MTR_5g026210 | 40.432 | 324 | 185 | 6 | 59 | 381 | 189 | 505 | 4.36e-80 | 260 |
MS.gene54200.t1 | MTR_5g026210 | 41.091 | 275 | 158 | 4 | 59 | 332 | 189 | 460 | 3.68e-68 | 227 |
MS.gene54200.t1 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 89 | 181 | 106 | 198 | 6.01e-40 | 144 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54200.t1 | AT4G17090 | 68.051 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 0.0 | 782 |
MS.gene54200.t1 | AT3G23920 | 65.367 | 436 | 137 | 2 | 89 | 510 | 106 | 541 | 0.0 | 613 |
MS.gene54200.t1 | AT4G15210 | 48.624 | 436 | 206 | 5 | 87 | 507 | 12 | 444 | 1.89e-149 | 438 |
MS.gene54200.t1 | AT4G15210 | 52.051 | 390 | 182 | 4 | 87 | 474 | 12 | 398 | 6.43e-147 | 429 |
MS.gene54200.t1 | AT2G32290 | 45.188 | 478 | 244 | 6 | 43 | 507 | 34 | 506 | 1.86e-141 | 421 |
MS.gene54200.t1 | AT4G00490 | 49.074 | 432 | 203 | 6 | 89 | 507 | 95 | 522 | 4.34e-139 | 413 |
MS.gene54200.t1 | AT4G15210 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 4.45e-139 | 410 |
MS.gene54200.t1 | AT4G15210 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 4.45e-139 | 410 |
MS.gene54200.t1 | AT5G55700 | 44.191 | 439 | 226 | 5 | 88 | 508 | 91 | 528 | 1.04e-130 | 391 |
MS.gene54200.t1 | AT2G45880 | 46.154 | 429 | 214 | 6 | 89 | 504 | 248 | 672 | 5.02e-122 | 374 |
MS.gene54200.t1 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 265 | 696 | 1.80e-99 | 316 |
MS.gene54200.t1 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 249 | 680 | 1.82e-99 | 316 |
MS.gene54200.t1 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 251 | 682 | 1.93e-99 | 315 |
MS.gene54200.t1 | AT5G55700 | 45.260 | 327 | 166 | 3 | 195 | 508 | 39 | 365 | 3.15e-98 | 302 |
MS.gene54200.t1 | AT5G18670 | 38.173 | 427 | 246 | 4 | 89 | 508 | 87 | 502 | 6.62e-90 | 286 |
Find 126 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATAGATTTACAGATTATT+TGG | 0.109679 | 5.1:-6513709 | MS.gene54200:CDS |
CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.1:+6512367 | None:intergenic |
TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.1:+6513219 | None:intergenic |
ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5.1:-6514164 | MS.gene54200:CDS |
ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5.1:+6512406 | None:intergenic |
TTGGTTTACACAGACAAATT+AGG | 0.267790 | 5.1:-6513834 | MS.gene54200:CDS |
ACTTGGAAGTTTCCTGGAAT+TGG | 0.295267 | 5.1:-6513204 | MS.gene54200:CDS |
GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.1:-6514196 | MS.gene54200:CDS |
TATATTGAATTTCACATGTA+TGG | 0.303816 | 5.1:-6512237 | MS.gene54200:CDS |
GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5.1:-6512016 | MS.gene54200:CDS |
GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.1:-6512494 | MS.gene54200:CDS |
AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.1:-6512533 | MS.gene54200:CDS |
GATGGAACTTGGAAGTTTCC+TGG | 0.321160 | 5.1:-6513210 | MS.gene54200:CDS |
TTATGTTGGACACATAATTA+AGG | 0.321924 | 5.1:-6511910 | MS.gene54200:CDS |
ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5.1:+6512393 | None:intergenic |
GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5.1:-6512602 | MS.gene54200:CDS |
ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.1:-6512475 | MS.gene54200:CDS |
CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5.1:-6514392 | MS.gene54200:CDS |
TGGTTTACACAGACAAATTA+GGG | 0.354994 | 5.1:-6513833 | MS.gene54200:CDS |
GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5.1:-6514059 | MS.gene54200:intron |
TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.1:+6512269 | None:intergenic |
CATCCCAGTGATATATATTC+AGG | 0.365694 | 5.1:+6513801 | None:intergenic |
ACAAGTGGACCTCATGATTC+TGG | 0.369913 | 5.1:-6512563 | MS.gene54200:CDS |
CTTATTTAAGAATAAATAAG+AGG | 0.373002 | 5.1:-6512037 | MS.gene54200:CDS |
AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5.1:-6514250 | MS.gene54200:CDS |
GATAGATTTACAGATTATTT+GGG | 0.377086 | 5.1:-6513708 | MS.gene54200:CDS |
AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.1:-6512095 | MS.gene54200:CDS |
CCCATTGTTACCGTATCTAA+TGG | 0.403700 | 5.1:+6514294 | None:intergenic |
CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.1:-6512367 | MS.gene54200:CDS |
CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5.1:-6511942 | MS.gene54200:CDS |
GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5.1:+6514159 | None:intergenic |
CTGATTTCTTCCATCACCCA+TGG | 0.422552 | 5.1:+6513870 | None:intergenic |
CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5.1:-6513273 | MS.gene54200:CDS |
AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5.1:-6513760 | MS.gene54200:CDS |
TTGAAGAGTGCTGGAGTTGA+AGG | 0.429269 | 5.1:-6514225 | MS.gene54200:CDS |
GGAGAATGATGTTATAATAG+AGG | 0.433712 | 5.1:-6511889 | MS.gene54200:CDS |
CATTGGAATTCTCCAATTCC+AGG | 0.435732 | 5.1:+6513192 | None:intergenic |
TGTTTCTTTCTGATTAATCA+AGG | 0.443999 | 5.1:+6514551 | None:intergenic |
TTTATACCTTGTCATAGCAT+TGG | 0.445074 | 5.1:+6513175 | None:intergenic |
GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5.1:+6513768 | None:intergenic |
TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.1:+6513220 | None:intergenic |
CATGGGTGATGGAAGAAATC+AGG | 0.453663 | 5.1:-6513869 | MS.gene54200:CDS |
AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.1:-6512377 | MS.gene54200:CDS |
TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5.1:-6511924 | MS.gene54200:CDS |
AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5.1:-6512601 | MS.gene54200:CDS |
ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5.1:-6513887 | MS.gene54200:intron |
CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.1:+6513228 | None:intergenic |
TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5.1:-6512003 | MS.gene54200:CDS |
TTGATGGCTTTGAAGAGTGC+TGG | 0.467245 | 5.1:-6514234 | MS.gene54200:CDS |
TTCAGTTTGTGACCAAAAGA+TGG | 0.467366 | 5.1:+6514468 | None:intergenic |
CCAGTATATGAGATCATCCT+TGG | 0.469208 | 5.1:-6512624 | MS.gene54200:intron |
AAATCCTGAATATATATCAC+TGG | 0.474793 | 5.1:-6513805 | MS.gene54200:CDS |
GCGGAAGCTTCTCATGTAAT+CGG | 0.475464 | 5.1:+6513731 | None:intergenic |
TTGTCTGTGTAAACCAACTC+AGG | 0.475976 | 5.1:+6513840 | None:intergenic |
AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.1:-6514202 | MS.gene54200:CDS |
TTTCACATGTATGGAAATGA+AGG | 0.478462 | 5.1:-6512228 | MS.gene54200:CDS |
TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5.1:-6512611 | MS.gene54200:CDS |
TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5.1:-6514163 | MS.gene54200:CDS |
ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5.1:-6512134 | MS.gene54200:CDS |
TCCATCACCCATGGAGGTAG+AGG | 0.485439 | 5.1:+6513879 | None:intergenic |
ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5.1:+6512173 | None:intergenic |
TCCTCTACCTCCATGGGTGA+TGG | 0.488299 | 5.1:-6513880 | MS.gene54200:CDS |
ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.1:-6513221 | MS.gene54200:CDS |
TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5.1:-6512183 | MS.gene54200:CDS |
TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5.1:-6512013 | MS.gene54200:CDS |
TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5.1:+6512607 | None:intergenic |
ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5.1:-6512026 | MS.gene54200:CDS |
GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.1:-6514203 | MS.gene54200:CDS |
CCATTAGATACGGTAACAAT+GGG | 0.513297 | 5.1:-6514294 | MS.gene54200:CDS |
TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5.1:-6514391 | MS.gene54200:CDS |
CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.1:-6514072 | MS.gene54200:CDS |
AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5.1:-6512027 | MS.gene54200:CDS |
TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.1:-6514136 | MS.gene54200:CDS |
TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5.1:-6511978 | MS.gene54200:CDS |
GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.1:-6514201 | MS.gene54200:CDS |
GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5.1:-6513777 | MS.gene54200:CDS |
TAGCATTCCTCTACCTCCAT+GGG | 0.534553 | 5.1:-6513886 | MS.gene54200:CDS |
CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.1:-6513228 | MS.gene54200:CDS |
TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5.1:-6511965 | MS.gene54200:CDS |
AGTGAGGATGGCAACAAAGA+TGG | 0.542830 | 5.1:-6512153 | MS.gene54200:CDS |
TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5.1:+6513747 | None:intergenic |
GCCATTAGATACGGTAACAA+TGG | 0.545301 | 5.1:-6514295 | MS.gene54200:CDS |
TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5.1:-6514217 | MS.gene54200:CDS |
AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5.1:-6513853 | MS.gene54200:CDS |
TGTGATGTTGCCATTAGATA+CGG | 0.551454 | 5.1:-6514304 | MS.gene54200:CDS |
GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.1:+6512462 | None:intergenic |
GGGCAATTGGGAAGAAAGAG+TGG | 0.553037 | 5.1:-6512589 | MS.gene54200:CDS |
AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5.1:-6512404 | MS.gene54200:CDS |
TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.1:-6512299 | MS.gene54200:CDS |
AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.1:-6514206 | MS.gene54200:CDS |
GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5.1:-6512188 | MS.gene54200:CDS |
GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5.1:-6511975 | MS.gene54200:CDS |
TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5.1:-6511941 | MS.gene54200:CDS |
AGGATGGCAACAAAGATGGC+AGG | 0.578781 | 5.1:-6512149 | MS.gene54200:CDS |
GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.1:-6512263 | MS.gene54200:CDS |
AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5.1:-6512578 | MS.gene54200:CDS |
CATGCAACTGAACTAACTGC+AGG | 0.595551 | 5.1:-6512326 | MS.gene54200:CDS |
ATTGGTTAATCAAGTGAGGA+TGG | 0.595555 | 5.1:-6512165 | MS.gene54200:CDS |
TCATTTGCAGGAAATTCAAG+TGG | 0.596130 | 5.1:-6513280 | MS.gene54200:intron |
GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.1:+6513249 | None:intergenic |
AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5.1:-6513263 | MS.gene54200:CDS |
GGCAATTGGGAAGAAAGAGT+GGG | 0.609694 | 5.1:-6512588 | MS.gene54200:CDS |
CATTTGCAGGAAATTCAAGT+GGG | 0.613333 | 5.1:-6513279 | MS.gene54200:intron |
CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5.1:-6512610 | MS.gene54200:CDS |
TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.1:-6512449 | MS.gene54200:CDS |
TGTCTGTGTAAACCAACTCA+GGG | 0.620140 | 5.1:+6513841 | None:intergenic |
CTGCAGGTTACTATAACACA+AGG | 0.621880 | 5.1:-6512310 | MS.gene54200:CDS |
AATCCTGAATATATATCACT+GGG | 0.633430 | 5.1:-6513804 | MS.gene54200:CDS |
AATAATCTGTAAATCTATCG+CGG | 0.635987 | 5.1:+6513712 | None:intergenic |
TGGTGATTCGAATAGAGTAC+CGG | 0.636351 | 5.1:-6514331 | MS.gene54200:CDS |
CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5.1:-6513264 | MS.gene54200:CDS |
AAGGATTGGTTAATCAAGTG+AGG | 0.645377 | 5.1:-6512169 | MS.gene54200:CDS |
TTAGATACGGTAACAATGGG+AGG | 0.652633 | 5.1:-6514291 | MS.gene54200:CDS |
GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5.1:+6512194 | None:intergenic |
AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.1:+6514312 | None:intergenic |
ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5.1:-6512609 | MS.gene54200:CDS |
TTGTATTGACCAGAATCATG+AGG | 0.670196 | 5.1:+6512554 | None:intergenic |
ATTTCTTCCATCACCCATGG+AGG | 0.672048 | 5.1:+6513873 | None:intergenic |
ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5.1:-6512146 | MS.gene54200:CDS |
AGAATTCCAATGCTATGACA+AGG | 0.682905 | 5.1:-6513181 | MS.gene54200:intron |
TCAATACAATCAATTTCCTG+AGG | 0.689657 | 5.1:-6512540 | MS.gene54200:CDS |
TTTACACAGACAAATTAGGG+AGG | 0.692025 | 5.1:-6513830 | MS.gene54200:CDS |
AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5.1:-6513262 | MS.gene54200:CDS |
CTCTATTCGAATCACCATCG+TGG | 0.716638 | 5.1:+6514337 | None:intergenic |
GCAATTGGGAAGAAAGAGTG+GGG | 0.730495 | 5.1:-6512587 | MS.gene54200:CDS |
TCTGTCACTCATAACCACGA+TGG | 0.739469 | 5.1:-6514351 | MS.gene54200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTCTAAATAATTTATATTT+AGG | + | chr5.1:6513403-6513422 | None:intergenic | 10.0% |
!!! | ATTAAATGATATAATTTTAC+GGG | + | chr5.1:6513426-6513445 | None:intergenic | 10.0% |
!!! | GATTAAATGATATAATTTTA+CGG | + | chr5.1:6513427-6513446 | None:intergenic | 10.0% |
!!! | TATTCTATTTTTATTCAATT+AGG | + | chr5.1:6512964-6512983 | None:intergenic | 10.0% |
!! | AAACAATTTCAAATATGATA+AGG | - | chr5.1:6513694-6513713 | MS.gene54200:intron | 15.0% |
!! | CTTATTTAAGAATAAATAAG+AGG | - | chr5.1:6514417-6514436 | MS.gene54200:CDS | 15.0% |
!!! | AATTCAATTTTTCCATATTA+AGG | - | chr5.1:6513008-6513027 | MS.gene54200:intron | 15.0% |
!!! | ATAAAAATCTAAGACTAATT+TGG | - | chr5.1:6512529-6512548 | MS.gene54200:CDS | 15.0% |
!!! | TTAAGATATTTTGCAATTAA+AGG | + | chr5.1:6513560-6513579 | None:intergenic | 15.0% |
!! | ACATTTGTTCAAAACTTTAA+CGG | - | chr5.1:6512870-6512889 | MS.gene54200:intron | 20.0% |
!! | GATAGATTTACAGATTATTT+GGG | - | chr5.1:6512746-6512765 | MS.gene54200:intron | 20.0% |
!! | TATATTGAATTTCACATGTA+TGG | - | chr5.1:6514217-6514236 | MS.gene54200:CDS | 20.0% |
!!! | GAGTTCAAAGAATATTTTTT+TGG | - | chr5.1:6513588-6513607 | MS.gene54200:intron | 20.0% |
!!! | GTCTAACACTAATATTATTT+TGG | + | chr5.1:6513338-6513357 | None:intergenic | 20.0% |
!!! | TAGTCTTAGATTTTTATGTT+TGG | + | chr5.1:6512526-6512545 | None:intergenic | 20.0% |
! | AAATCCTGAATATATATCAC+TGG | - | chr5.1:6512649-6512668 | MS.gene54200:intron | 25.0% |
! | AATAATCTGTAAATCTATCG+CGG | + | chr5.1:6512745-6512764 | None:intergenic | 25.0% |
! | AATCCTGAATATATATCACT+GGG | - | chr5.1:6512650-6512669 | MS.gene54200:intron | 25.0% |
! | ACTAACTATCATCCTTAATA+TGG | + | chr5.1:6513023-6513042 | None:intergenic | 25.0% |
! | ATTATAGAGAAAATCTTGTG+TGG | + | chr5.1:6513533-6513552 | None:intergenic | 25.0% |
! | ATTTGTTCAAAACTTTAACG+GGG | - | chr5.1:6512872-6512891 | MS.gene54200:intron | 25.0% |
! | CATTTGTTCAAAACTTTAAC+GGG | - | chr5.1:6512871-6512890 | MS.gene54200:intron | 25.0% |
! | CGATAGATTTACAGATTATT+TGG | - | chr5.1:6512745-6512764 | MS.gene54200:intron | 25.0% |
! | TAATATTCAACCACCAATTT+AGG | - | chr5.1:6512444-6512463 | MS.gene54200:CDS | 25.0% |
! | TGTAAAGAAAGACAAGAAAT+GGG | - | chr5.1:6512063-6512082 | MS.gene54200:CDS | 25.0% |
! | TGTTTCTTTCTGATTAATCA+AGG | + | chr5.1:6511906-6511925 | None:intergenic | 25.0% |
! | TTATGTTGGACACATAATTA+AGG | - | chr5.1:6514544-6514563 | MS.gene54200:CDS | 25.0% |
!! | CCAAAAATTAAACCATCTTT+TGG | - | chr5.1:6511974-6511993 | MS.gene54200:CDS | 25.0% |
!! | TAAGTACTTCATCAATTTTG+TGG | - | chr5.1:6512783-6512802 | MS.gene54200:intron | 25.0% |
!! | TTATCTAAGACATTACGTTA+AGG | + | chr5.1:6512938-6512957 | None:intergenic | 25.0% |
!!! | AGACATATTTTGTTGTAACT+AGG | - | chr5.1:6513354-6513373 | MS.gene54200:intron | 25.0% |
!!! | CCAAAAGATGGTTTAATTTT+TGG | + | chr5.1:6511977-6511996 | None:intergenic | 25.0% |
!!! | TAAAGTTTTGAACAAATGTG+TGG | + | chr5.1:6512869-6512888 | None:intergenic | 25.0% |
AATAAATAAGAGGTTGCTTG+AGG | - | chr5.1:6514427-6514446 | MS.gene54200:CDS | 30.0% | |
AGATATGATTCAAGTGCTTA+TGG | - | chr5.1:6514359-6514378 | MS.gene54200:CDS | 30.0% | |
AGCCAAGTATCTAAATTACT+CGG | + | chr5.1:6512812-6512831 | None:intergenic | 30.0% | |
ATAAATAAGAGGTTGCTTGA+GGG | - | chr5.1:6514428-6514447 | MS.gene54200:CDS | 30.0% | |
ATGGTCCTATGAAGTATAAT+TGG | - | chr5.1:6512290-6512309 | MS.gene54200:CDS | 30.0% | |
CACACAAAAAATTGAAAGGT+AGG | + | chr5.1:6513485-6513504 | None:intergenic | 30.0% | |
CTGTAAAGAAAGACAAGAAA+TGG | - | chr5.1:6512062-6512081 | MS.gene54200:CDS | 30.0% | |
GAATTTCCTGCAAATGAATT+TGG | + | chr5.1:6513171-6513190 | None:intergenic | 30.0% | |
GGAGAATGATGTTATAATAG+AGG | - | chr5.1:6514565-6514584 | MS.gene54200:CDS | 30.0% | |
GGATGATAGTTAGTTATAAG+AGG | - | chr5.1:6513029-6513048 | MS.gene54200:intron | 30.0% | |
TACCGAGTAATTTAGATACT+TGG | - | chr5.1:6512807-6512826 | MS.gene54200:intron | 30.0% | |
TATAACACAAGGTTTCATGA+TGG | - | chr5.1:6514155-6514174 | MS.gene54200:CDS | 30.0% | |
TCAATACAATCAATTTCCTG+AGG | - | chr5.1:6513914-6513933 | MS.gene54200:intron | 30.0% | |
TCACATTTAAGAGCCTAAAT+TGG | + | chr5.1:6512460-6512479 | None:intergenic | 30.0% | |
TGATAATTGGAGGAAATTTG+TGG | - | chr5.1:6514451-6514470 | MS.gene54200:CDS | 30.0% | |
TGGTCCTATGAAGTATAATT+GGG | - | chr5.1:6512291-6512310 | MS.gene54200:CDS | 30.0% | |
TGGTTTACACAGACAAATTA+GGG | - | chr5.1:6512621-6512640 | MS.gene54200:CDS | 30.0% | |
TTATGACCAAATTCATTTGC+AGG | - | chr5.1:6513162-6513181 | MS.gene54200:intron | 30.0% | |
TTGGTTTACACAGACAAATT+AGG | - | chr5.1:6512620-6512639 | MS.gene54200:CDS | 30.0% | |
TTTATACCTTGTCATAGCAT+TGG | + | chr5.1:6513282-6513301 | None:intergenic | 30.0% | |
TTTCACATGTATGGAAATGA+AGG | - | chr5.1:6514226-6514245 | MS.gene54200:CDS | 30.0% | |
! | AAAAGCATATTCCAAACAAG+TGG | - | chr5.1:6514050-6514069 | MS.gene54200:intron | 30.0% |
! | GTTATGTCTTTTCATCAATG+TGG | - | chr5.1:6512370-6512389 | MS.gene54200:CDS | 30.0% |
! | TTTTCAAAAGAGAAGGAACA+TGG | - | chr5.1:6513946-6513965 | MS.gene54200:intron | 30.0% |
! | TTTTGGACAAGAAACTTTGT+TGG | + | chr5.1:6511960-6511979 | None:intergenic | 30.0% |
!! | ACTGGATTTTTCAAAAGAGA+AGG | - | chr5.1:6513939-6513958 | MS.gene54200:intron | 30.0% |
!! | ACTTGTTTGGAATATGCTTT+TGG | + | chr5.1:6514051-6514070 | None:intergenic | 30.0% |
AAACTATCTGCCAAAATAGC+TGG | - | chr5.1:6514077-6514096 | MS.gene54200:CDS | 35.0% | |
AATCAATTTCCTGAGGATAC+TGG | - | chr5.1:6513921-6513940 | MS.gene54200:intron | 35.0% | |
ACTTGATTAACCAATCCTTC+TGG | + | chr5.1:6514284-6514303 | None:intergenic | 35.0% | |
AGAATTCCAATGCTATGACA+AGG | - | chr5.1:6513273-6513292 | MS.gene54200:CDS | 35.0% | |
ATAGTTTCACTCCACTTGTT+TGG | + | chr5.1:6514064-6514083 | None:intergenic | 35.0% | |
ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.1:6513979-6513998 | MS.gene54200:intron | 35.0% | |
ATTGGTTAATCAAGTGAGGA+TGG | - | chr5.1:6514289-6514308 | MS.gene54200:CDS | 35.0% | |
CATCCCAGTGATATATATTC+AGG | + | chr5.1:6512656-6512675 | None:intergenic | 35.0% | |
CATTTAAGAGCCTAAATTGG+TGG | + | chr5.1:6512457-6512476 | None:intergenic | 35.0% | |
CATTTGCAGGAAATTCAAGT+GGG | - | chr5.1:6513175-6513194 | MS.gene54200:intron | 35.0% | |
CCAAAATAGCTGGAATTCAT+TGG | - | chr5.1:6514087-6514106 | MS.gene54200:CDS | 35.0% | |
CCATTAGATACGGTAACAAT+GGG | - | chr5.1:6512160-6512179 | MS.gene54200:CDS | 35.0% | |
GCTTCCCAATTATACTTCAT+AGG | + | chr5.1:6512298-6512317 | None:intergenic | 35.0% | |
GGCACACACAAAAAATTGAA+AGG | + | chr5.1:6513489-6513508 | None:intergenic | 35.0% | |
GTTCAGATGGTACAAAAACA+TGG | - | chr5.1:6512331-6512350 | MS.gene54200:CDS | 35.0% | |
TAATTGTTCACCAGAAGGAT+TGG | - | chr5.1:6514271-6514290 | MS.gene54200:CDS | 35.0% | |
TATGGGACTGATCTTTATGT+TGG | - | chr5.1:6514530-6514549 | MS.gene54200:CDS | 35.0% | |
TCATTTGCAGGAAATTCAAG+TGG | - | chr5.1:6513174-6513193 | MS.gene54200:intron | 35.0% | |
TCCATTTGAGCACAACAATT+AGG | + | chr5.1:6513510-6513529 | None:intergenic | 35.0% | |
TGTGATGTTGCCATTAGATA+CGG | - | chr5.1:6512150-6512169 | MS.gene54200:CDS | 35.0% | |
TTCAGTTTGTGACCAAAAGA+TGG | + | chr5.1:6511989-6512008 | None:intergenic | 35.0% | |
TTGAAAAATCCAGTATCCTC+AGG | + | chr5.1:6513933-6513952 | None:intergenic | 35.0% | |
TTTACACAGACAAATTAGGG+AGG | - | chr5.1:6512624-6512643 | MS.gene54200:intron | 35.0% | |
TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.1:6514188-6514207 | None:intergenic | 35.0% | |
! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.1:6512204-6512223 | MS.gene54200:CDS | 35.0% |
! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.1:6512373-6512392 | MS.gene54200:CDS | 35.0% |
! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.1:6514090-6514109 | None:intergenic | 35.0% |
! | TTGCTGAAGCTGATTCATAT+GGG | - | chr5.1:6514513-6514532 | MS.gene54200:CDS | 35.0% |
! | TTGTATTGACCAGAATCATG+AGG | + | chr5.1:6513903-6513922 | None:intergenic | 35.0% |
! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.1:6514476-6514495 | MS.gene54200:CDS | 35.0% |
!! | AAGGATTGGTTAATCAAGTG+AGG | - | chr5.1:6514285-6514304 | MS.gene54200:CDS | 35.0% |
!! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.1:6514005-6514024 | MS.gene54200:intron | 35.0% |
AATGGCAACATCACAAACAC+CGG | + | chr5.1:6512145-6512164 | None:intergenic | 40.0% | |
ACTTGGAAGTTTCCTGGAAT+TGG | - | chr5.1:6513250-6513269 | MS.gene54200:CDS | 40.0% | |
CATTGGAATTCTCCAATTCC+AGG | + | chr5.1:6513265-6513284 | None:intergenic | 40.0% | |
CCAAGGATGATCTCATATAC+TGG | + | chr5.1:6513833-6513852 | None:intergenic | 40.0% | |
CCAGTATATGAGATCATCCT+TGG | - | chr5.1:6513830-6513849 | MS.gene54200:CDS | 40.0% | |
CCCATTGTTACCGTATCTAA+TGG | + | chr5.1:6512163-6512182 | None:intergenic | 40.0% | |
CTGCAGGTTACTATAACACA+AGG | - | chr5.1:6514144-6514163 | MS.gene54200:CDS | 40.0% | |
GATGCTAATTGTTCACCAGA+AGG | - | chr5.1:6514266-6514285 | MS.gene54200:CDS | 40.0% | |
GCACAAATGCTAGCAAAACA+TGG | - | chr5.1:6514191-6514210 | MS.gene54200:CDS | 40.0% | |
GCCATTAGATACGGTAACAA+TGG | - | chr5.1:6512159-6512178 | MS.gene54200:CDS | 40.0% | |
GCCTAATTGTTGTGCTCAAA+TGG | - | chr5.1:6513506-6513525 | MS.gene54200:intron | 40.0% | |
GGAACATGGAACACAGAATA+TGG | - | chr5.1:6513960-6513979 | MS.gene54200:intron | 40.0% | |
GGTGAACAATTAGCATCACA+AGG | + | chr5.1:6514263-6514282 | None:intergenic | 40.0% | |
GTTTGCTTGAGTACCAATCA+AGG | + | chr5.1:6513995-6514014 | None:intergenic | 40.0% | |
TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.1:6513237-6513256 | None:intergenic | 40.0% | |
TGGTGATTCGAATAGAGTAC+CGG | - | chr5.1:6512123-6512142 | MS.gene54200:CDS | 40.0% | |
TGTCTGTGTAAACCAACTCA+GGG | + | chr5.1:6512616-6512635 | None:intergenic | 40.0% | |
TTAACGGGGCTATATATCGT+CGG | - | chr5.1:6512886-6512905 | MS.gene54200:intron | 40.0% | |
TTAGATACGGTAACAATGGG+AGG | - | chr5.1:6512163-6512182 | MS.gene54200:CDS | 40.0% | |
TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.1:6513238-6513257 | None:intergenic | 40.0% | |
TTGTCTGTGTAAACCAACTC+AGG | + | chr5.1:6512617-6512636 | None:intergenic | 40.0% | |
! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.1:6512248-6512267 | MS.gene54200:CDS | 40.0% |
! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.1:6512252-6512271 | MS.gene54200:CDS | 40.0% |
! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.1:6512382-6512401 | MS.gene54200:CDS | 40.0% |
! | CTTGCTGAAGCTGATTCATA+TGG | - | chr5.1:6514512-6514531 | MS.gene54200:CDS | 40.0% |
! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.1:6512271-6512290 | MS.gene54200:CDS | 40.0% |
! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.1:6512318-6512337 | MS.gene54200:CDS | 40.0% |
!! | GGTCAAGTTTTGTCTACAAG+TGG | - | chr5.1:6514380-6514399 | MS.gene54200:CDS | 40.0% |
!! | GTTTTGAACAAATGTGTGGC+TGG | + | chr5.1:6512865-6512884 | None:intergenic | 40.0% |
!! | TGTCTGATGGTGGTAAACTA+AGG | - | chr5.1:6514489-6514508 | MS.gene54200:CDS | 40.0% |
AAGAAAGAGTGGGGAACAAG+TGG | - | chr5.1:6513876-6513895 | MS.gene54200:CDS | 45.0% | |
AATCAGGAAGAACCCTGAGT+TGG | - | chr5.1:6512601-6512620 | MS.gene54200:CDS | 45.0% | |
ACAAGTGGACCTCATGATTC+TGG | - | chr5.1:6513891-6513910 | MS.gene54200:intron | 45.0% | |
ACCCTGAAACTGATGGAACT+TGG | - | chr5.1:6513233-6513252 | MS.gene54200:CDS | 45.0% | |
AGTGAGGATGGCAACAAAGA+TGG | - | chr5.1:6514301-6514320 | MS.gene54200:CDS | 45.0% | |
ATAGCATTCCTCTACCTCCA+TGG | - | chr5.1:6512567-6512586 | MS.gene54200:CDS | 45.0% | |
ATTTCTTCCATCACCCATGG+AGG | + | chr5.1:6512584-6512603 | None:intergenic | 45.0% | |
CAGGAAATTCAAGTGGGACT+AGG | - | chr5.1:6513181-6513200 | MS.gene54200:intron | 45.0% | |
CATGCAACTGAACTAACTGC+AGG | - | chr5.1:6514128-6514147 | MS.gene54200:CDS | 45.0% | |
CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.1:6513229-6513248 | None:intergenic | 45.0% | |
CCATCTTACCCTGAAACTGA+TGG | - | chr5.1:6513226-6513245 | MS.gene54200:CDS | 45.0% | |
CTCTATTCGAATCACCATCG+TGG | + | chr5.1:6512120-6512139 | None:intergenic | 45.0% | |
CTGATTTCTTCCATCACCCA+TGG | + | chr5.1:6512587-6512606 | None:intergenic | 45.0% | |
GATGGAACTTGGAAGTTTCC+TGG | - | chr5.1:6513244-6513263 | MS.gene54200:CDS | 45.0% | |
GCAATTGGGAAGAAAGAGTG+GGG | - | chr5.1:6513867-6513886 | MS.gene54200:CDS | 45.0% | |
GCGGAAGCTTCTCATGTAAT+CGG | + | chr5.1:6512726-6512745 | None:intergenic | 45.0% | |
GGCAATTGGGAAGAAAGAGT+GGG | - | chr5.1:6513866-6513885 | MS.gene54200:CDS | 45.0% | |
GGTTGCTTGAGGGTGATAAT+TGG | - | chr5.1:6514438-6514457 | MS.gene54200:CDS | 45.0% | |
GTTGTGAGTATGTCTGATGG+TGG | - | chr5.1:6514479-6514498 | MS.gene54200:CDS | 45.0% | |
TAATCGGAGTAGACCTGAAG+TGG | + | chr5.1:6512710-6512729 | None:intergenic | 45.0% | |
TAGCATTCCTCTACCTCCAT+GGG | - | chr5.1:6512568-6512587 | MS.gene54200:CDS | 45.0% | |
TCTGTCACTCATAACCACGA+TGG | - | chr5.1:6512103-6512122 | MS.gene54200:CDS | 45.0% | |
TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5.1:6512237-6512256 | MS.gene54200:CDS | 45.0% | |
TGCTTGAGGGTGATAATTGG+AGG | - | chr5.1:6514441-6514460 | MS.gene54200:CDS | 45.0% | |
! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.1:6512251-6512270 | MS.gene54200:CDS | 45.0% |
! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.1:6512253-6512272 | MS.gene54200:CDS | 45.0% |
!! | CATGGGTGATGGAAGAAATC+AGG | - | chr5.1:6512585-6512604 | MS.gene54200:CDS | 45.0% |
!! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5.1:6512395-6512414 | MS.gene54200:CDS | 45.0% |
!! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5.1:6512229-6512248 | MS.gene54200:CDS | 45.0% |
!! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5.1:6512220-6512239 | MS.gene54200:CDS | 45.0% |
AAGCATCAGCAGGGGCAATT+GGG | - | chr5.1:6513853-6513872 | MS.gene54200:CDS | 50.0% | |
AAGTGGGACTAGGTCCATGT+GGG | - | chr5.1:6513191-6513210 | MS.gene54200:CDS | 50.0% | |
AGCAGGAAGAACTCCACTTC+AGG | - | chr5.1:6512694-6512713 | MS.gene54200:intron | 50.0% | |
AGGATGGCAACAAAGATGGC+AGG | - | chr5.1:6514305-6514324 | MS.gene54200:CDS | 50.0% | |
ATGGCAACAAAGATGGCAGG+TGG | - | chr5.1:6514308-6514327 | MS.gene54200:CDS | 50.0% | |
GATTCAGTGCCTGTTCTAGC+AGG | - | chr5.1:6512677-6512696 | MS.gene54200:intron | 50.0% | |
GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5.1:6512689-6512708 | None:intergenic | 50.0% | |
GGATATCTCAACTCCCCACA+TGG | + | chr5.1:6513208-6513227 | None:intergenic | 50.0% | |
GGCTATATATCGTCGGTCTC+AGG | - | chr5.1:6512893-6512912 | MS.gene54200:intron | 50.0% | |
GGGCAATTGGGAAGAAAGAG+TGG | - | chr5.1:6513865-6513884 | MS.gene54200:CDS | 50.0% | |
!! | ATCCTTGGAAGCATCAGCAG+GGG | - | chr5.1:6513845-6513864 | MS.gene54200:CDS | 50.0% |
!! | CATCCTTGGAAGCATCAGCA+GGG | - | chr5.1:6513844-6513863 | MS.gene54200:CDS | 50.0% |
!! | TCATCCTTGGAAGCATCAGC+AGG | - | chr5.1:6513843-6513862 | MS.gene54200:CDS | 50.0% |
AGTGGGACTAGGTCCATGTG+GGG | - | chr5.1:6513192-6513211 | MS.gene54200:CDS | 55.0% | |
ATGGCAGGTGGTGAACTTGC+TGG | - | chr5.1:6514320-6514339 | MS.gene54200:CDS | 55.0% | |
CAAGTGGGACTAGGTCCATG+TGG | - | chr5.1:6513190-6513209 | MS.gene54200:CDS | 55.0% | |
TCCATCACCCATGGAGGTAG+AGG | + | chr5.1:6512578-6512597 | None:intergenic | 55.0% | |
TCCTCTACCTCCATGGGTGA+TGG | - | chr5.1:6512574-6512593 | MS.gene54200:CDS | 55.0% | |
! | GAAGCATCAGCAGGGGCAAT+TGG | - | chr5.1:6513852-6513871 | MS.gene54200:CDS | 55.0% |
! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.1:6512258-6512277 | MS.gene54200:CDS | 55.0% |
TGCCCCTGCTGATGCTTCCA+AGG | + | chr5.1:6513850-6513869 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 6511875 | 6514601 | 6511875 | ID=MS.gene54200 |
chr5.1 | mRNA | 6511875 | 6514601 | 6511875 | ID=MS.gene54200.t1;Parent=MS.gene54200 |
chr5.1 | exon | 6514060 | 6514601 | 6514060 | ID=MS.gene54200.t1.exon1;Parent=MS.gene54200.t1 |
chr5.1 | CDS | 6514060 | 6514601 | 6514060 | ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1 |
chr5.1 | exon | 6513695 | 6513905 | 6513695 | ID=MS.gene54200.t1.exon2;Parent=MS.gene54200.t1 |
chr5.1 | CDS | 6513695 | 6513905 | 6513695 | ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1 |
chr5.1 | exon | 6513182 | 6513292 | 6513182 | ID=MS.gene54200.t1.exon3;Parent=MS.gene54200.t1 |
chr5.1 | CDS | 6513182 | 6513292 | 6513182 | ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1 |
chr5.1 | exon | 6511875 | 6512642 | 6511875 | ID=MS.gene54200.t1.exon4;Parent=MS.gene54200.t1 |
chr5.1 | CDS | 6511875 | 6512642 | 6511875 | ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1 |
Gene Sequence |
Protein sequence |