AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54200.t1 MTR_5g013620 97.974 543 11 0 1 543 1 543 0.0 1121
MS.gene54200.t1 MTR_5g013640 91.743 545 41 2 1 543 1 543 0.0 1042
MS.gene54200.t1 MTR_4g099110 73.985 542 123 5 1 535 1 531 0.0 835
MS.gene54200.t1 MTR_6g477780 63.158 342 114 2 181 510 10 351 2.12e-165 474
MS.gene54200.t1 MTR_4g045667 49.885 435 201 4 87 507 11 442 3.54e-156 455
MS.gene54200.t1 MTR_2g089030 50.000 436 201 4 86 507 83 515 2.03e-149 441
MS.gene54200.t1 MTR_8g099775 45.824 467 232 7 90 543 80 538 7.63e-140 415
MS.gene54200.t1 MTR_7g077410 46.501 443 220 6 86 515 262 700 2.16e-123 378
MS.gene54200.t1 MTR_2g020240 38.581 451 267 4 63 508 57 502 9.26e-106 327
MS.gene54200.t1 MTR_5g026210 37.797 463 270 8 59 510 189 644 1.44e-103 325
MS.gene54200.t1 MTR_2g020240 39.024 369 216 3 143 507 3 366 1.06e-89 281
MS.gene54200.t1 MTR_5g026210 40.432 324 185 6 59 381 189 505 4.36e-80 260
MS.gene54200.t1 MTR_5g026210 41.091 275 158 4 59 332 189 460 3.68e-68 227
MS.gene54200.t1 MTR_6g477770 66.667 93 31 0 89 181 106 198 6.01e-40 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54200.t1 AT4G17090 68.051 554 160 8 1 543 1 548 0.0 782
MS.gene54200.t1 AT3G23920 65.367 436 137 2 89 510 106 541 0.0 613
MS.gene54200.t1 AT4G15210 48.624 436 206 5 87 507 12 444 1.89e-149 438
MS.gene54200.t1 AT4G15210 52.051 390 182 4 87 474 12 398 6.43e-147 429
MS.gene54200.t1 AT2G32290 45.188 478 244 6 43 507 34 506 1.86e-141 421
MS.gene54200.t1 AT4G00490 49.074 432 203 6 89 507 95 522 4.34e-139 413
MS.gene54200.t1 AT4G15210 47.847 418 194 5 128 531 1 408 4.45e-139 410
MS.gene54200.t1 AT4G15210 47.847 418 194 5 128 531 1 408 4.45e-139 410
MS.gene54200.t1 AT5G55700 44.191 439 226 5 88 508 91 528 1.04e-130 391
MS.gene54200.t1 AT2G45880 46.154 429 214 6 89 504 248 672 5.02e-122 374
MS.gene54200.t1 AT5G45300 39.726 438 246 8 85 510 265 696 1.80e-99 316
MS.gene54200.t1 AT5G45300 39.726 438 246 8 85 510 249 680 1.82e-99 316
MS.gene54200.t1 AT5G45300 39.726 438 246 8 85 510 251 682 1.93e-99 315
MS.gene54200.t1 AT5G55700 45.260 327 166 3 195 508 39 365 3.15e-98 302
MS.gene54200.t1 AT5G18670 38.173 427 246 4 89 508 87 502 6.62e-90 286

Find 126 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAGATTTACAGATTATT+TGG 0.109679 5.1:-6513709 MS.gene54200:CDS
CCAATGAATTCCAGCTATTT+TGG 0.174268 5.1:+6512367 None:intergenic
TTCCAAGTTCCATCAGTTTC+AGG 0.191128 5.1:+6513219 None:intergenic
ATGGTCCTATGAAGTATAAT+TGG 0.246951 5.1:-6514164 MS.gene54200:CDS
ACTTGTTTGGAATATGCTTT+TGG 0.267147 5.1:+6512406 None:intergenic
TTGGTTTACACAGACAAATT+AGG 0.267790 5.1:-6513834 MS.gene54200:CDS
ACTTGGAAGTTTCCTGGAAT+TGG 0.295267 5.1:-6513204 MS.gene54200:CDS
GGTTGATGCTTGGTGGGGTT+TGG 0.299766 5.1:-6514196 MS.gene54200:CDS
TATATTGAATTTCACATGTA+TGG 0.303816 5.1:-6512237 MS.gene54200:CDS
GGTTGCTTGAGGGTGATAAT+TGG 0.305293 5.1:-6512016 MS.gene54200:CDS
GGAACATGGAACACAGAATA+TGG 0.310195 5.1:-6512494 MS.gene54200:CDS
AATCAATTTCCTGAGGATAC+TGG 0.317015 5.1:-6512533 MS.gene54200:CDS
GATGGAACTTGGAAGTTTCC+TGG 0.321160 5.1:-6513210 MS.gene54200:CDS
TTATGTTGGACACATAATTA+AGG 0.321924 5.1:-6511910 MS.gene54200:CDS
ATAGTTTCACTCCACTTGTT+TGG 0.337144 5.1:+6512393 None:intergenic
GAAGCATCAGCAGGGGCAAT+TGG 0.347112 5.1:-6512602 MS.gene54200:CDS
ATGGAGATTTCTTCCTTGAT+TGG 0.348721 5.1:-6512475 MS.gene54200:CDS
CTGTAAAGAAAGACAAGAAA+TGG 0.352936 5.1:-6514392 MS.gene54200:CDS
TGGTTTACACAGACAAATTA+GGG 0.354994 5.1:-6513833 MS.gene54200:CDS
GAAATGTTGGTGACTCTTGC+AGG 0.358515 5.1:-6514059 MS.gene54200:intron
TTTGCTAGCATTTGTGCTAT+TGG 0.361586 5.1:+6512269 None:intergenic
CATCCCAGTGATATATATTC+AGG 0.365694 5.1:+6513801 None:intergenic
ACAAGTGGACCTCATGATTC+TGG 0.369913 5.1:-6512563 MS.gene54200:CDS
CTTATTTAAGAATAAATAAG+AGG 0.373002 5.1:-6512037 MS.gene54200:CDS
AGCAATGAATGCTAGTTTGA+TGG 0.376383 5.1:-6514250 MS.gene54200:CDS
GATAGATTTACAGATTATTT+GGG 0.377086 5.1:-6513708 MS.gene54200:CDS
AGATATGATTCAAGTGCTTA+TGG 0.392336 5.1:-6512095 MS.gene54200:CDS
CCCATTGTTACCGTATCTAA+TGG 0.403700 5.1:+6514294 None:intergenic
CCAAAATAGCTGGAATTCAT+TGG 0.410744 5.1:-6512367 MS.gene54200:CDS
CTTGCTGAAGCTGATTCATA+TGG 0.414041 5.1:-6511942 MS.gene54200:CDS
GCTTCCCAATTATACTTCAT+AGG 0.415265 5.1:+6514159 None:intergenic
CTGATTTCTTCCATCACCCA+TGG 0.422552 5.1:+6513870 None:intergenic
CAGGAAATTCAAGTGGGACT+AGG 0.423979 5.1:-6513273 MS.gene54200:CDS
AGCAGGAAGAACTCCACTTC+AGG 0.426300 5.1:-6513760 MS.gene54200:CDS
TTGAAGAGTGCTGGAGTTGA+AGG 0.429269 5.1:-6514225 MS.gene54200:CDS
GGAGAATGATGTTATAATAG+AGG 0.433712 5.1:-6511889 MS.gene54200:CDS
CATTGGAATTCTCCAATTCC+AGG 0.435732 5.1:+6513192 None:intergenic
TGTTTCTTTCTGATTAATCA+AGG 0.443999 5.1:+6514551 None:intergenic
TTTATACCTTGTCATAGCAT+TGG 0.445074 5.1:+6513175 None:intergenic
GGAGTTCTTCCTGCTAGAAC+AGG 0.447514 5.1:+6513768 None:intergenic
TCCAAGTTCCATCAGTTTCA+GGG 0.453104 5.1:+6513220 None:intergenic
CATGGGTGATGGAAGAAATC+AGG 0.453663 5.1:-6513869 MS.gene54200:CDS
AAACTATCTGCCAAAATAGC+TGG 0.456022 5.1:-6512377 MS.gene54200:CDS
TATGGGACTGATCTTTATGT+TGG 0.456464 5.1:-6511924 MS.gene54200:CDS
AAGCATCAGCAGGGGCAATT+GGG 0.462242 5.1:-6512601 MS.gene54200:CDS
ATAGCATTCCTCTACCTCCA+TGG 0.463802 5.1:-6513887 MS.gene54200:intron
CCATCAGTTTCAGGGTAAGA+TGG 0.465255 5.1:+6513228 None:intergenic
TGATAATTGGAGGAAATTTG+TGG 0.467073 5.1:-6512003 MS.gene54200:CDS
TTGATGGCTTTGAAGAGTGC+TGG 0.467245 5.1:-6514234 MS.gene54200:CDS
TTCAGTTTGTGACCAAAAGA+TGG 0.467366 5.1:+6514468 None:intergenic
CCAGTATATGAGATCATCCT+TGG 0.469208 5.1:-6512624 MS.gene54200:intron
AAATCCTGAATATATATCAC+TGG 0.474793 5.1:-6513805 MS.gene54200:CDS
GCGGAAGCTTCTCATGTAAT+CGG 0.475464 5.1:+6513731 None:intergenic
TTGTCTGTGTAAACCAACTC+AGG 0.475976 5.1:+6513840 None:intergenic
AGTAATGGTTGATGCTTGGT+GGG 0.476693 5.1:-6514202 MS.gene54200:CDS
TTTCACATGTATGGAAATGA+AGG 0.478462 5.1:-6512228 MS.gene54200:CDS
TCATCCTTGGAAGCATCAGC+AGG 0.479509 5.1:-6512611 MS.gene54200:CDS
TGGTCCTATGAAGTATAATT+GGG 0.480087 5.1:-6514163 MS.gene54200:CDS
ATGGCAGGTGGTGAACTTGC+TGG 0.480529 5.1:-6512134 MS.gene54200:CDS
TCCATCACCCATGGAGGTAG+AGG 0.485439 5.1:+6513879 None:intergenic
ACTTGATTAACCAATCCTTC+TGG 0.487449 5.1:+6512173 None:intergenic
TCCTCTACCTCCATGGGTGA+TGG 0.488299 5.1:-6513880 MS.gene54200:CDS
ACCCTGAAACTGATGGAACT+TGG 0.491404 5.1:-6513221 MS.gene54200:CDS
TAATTGTTCACCAGAAGGAT+TGG 0.500260 5.1:-6512183 MS.gene54200:CDS
TGCTTGAGGGTGATAATTGG+AGG 0.503043 5.1:-6512013 MS.gene54200:CDS
TGCCCCTGCTGATGCTTCCA+AGG 0.505543 5.1:+6512607 None:intergenic
ATAAATAAGAGGTTGCTTGA+GGG 0.505894 5.1:-6512026 MS.gene54200:CDS
GAGTAATGGTTGATGCTTGG+TGG 0.507394 5.1:-6514203 MS.gene54200:CDS
CCATTAGATACGGTAACAAT+GGG 0.513297 5.1:-6514294 MS.gene54200:CDS
TGTAAAGAAAGACAAGAAAT+GGG 0.514719 5.1:-6514391 MS.gene54200:CDS
CATCAATGTGGTGGAAATGT+TGG 0.516528 5.1:-6514072 MS.gene54200:CDS
AATAAATAAGAGGTTGCTTG+AGG 0.517623 5.1:-6512027 MS.gene54200:CDS
TTATGCTGAGCTTGTTCAGA+TGG 0.518500 5.1:-6514136 MS.gene54200:CDS
TTTGTTGTGAGTATGTCTGA+TGG 0.525311 5.1:-6511978 MS.gene54200:CDS
GTAATGGTTGATGCTTGGTG+GGG 0.525670 5.1:-6514201 MS.gene54200:CDS
GATTCAGTGCCTGTTCTAGC+AGG 0.529878 5.1:-6513777 MS.gene54200:CDS
TAGCATTCCTCTACCTCCAT+GGG 0.534553 5.1:-6513886 MS.gene54200:CDS
CCATCTTACCCTGAAACTGA+TGG 0.538520 5.1:-6513228 MS.gene54200:CDS
TGTCTGATGGTGGTAAACTA+AGG 0.542826 5.1:-6511965 MS.gene54200:CDS
AGTGAGGATGGCAACAAAGA+TGG 0.542830 5.1:-6512153 MS.gene54200:CDS
TAATCGGAGTAGACCTGAAG+TGG 0.543820 5.1:+6513747 None:intergenic
GCCATTAGATACGGTAACAA+TGG 0.545301 5.1:-6514295 MS.gene54200:CDS
TGCTGGAGTTGAAGGAGTAA+TGG 0.546595 5.1:-6514217 MS.gene54200:CDS
AATCAGGAAGAACCCTGAGT+TGG 0.548086 5.1:-6513853 MS.gene54200:CDS
TGTGATGTTGCCATTAGATA+CGG 0.551454 5.1:-6514304 MS.gene54200:CDS
GTTTGCTTGAGTACCAATCA+AGG 0.552816 5.1:+6512462 None:intergenic
GGGCAATTGGGAAGAAAGAG+TGG 0.553037 5.1:-6512589 MS.gene54200:CDS
AAAAGCATATTCCAAACAAG+TGG 0.558992 5.1:-6512404 MS.gene54200:CDS
TATAACACAAGGTTTCATGA+TGG 0.559816 5.1:-6512299 MS.gene54200:CDS
AAGGAGTAATGGTTGATGCT+TGG 0.565190 5.1:-6514206 MS.gene54200:CDS
GATGCTAATTGTTCACCAGA+AGG 0.566913 5.1:-6512188 MS.gene54200:CDS
GTTGTGAGTATGTCTGATGG+TGG 0.571037 5.1:-6511975 MS.gene54200:CDS
TTGCTGAAGCTGATTCATAT+GGG 0.575219 5.1:-6511941 MS.gene54200:CDS
AGGATGGCAACAAAGATGGC+AGG 0.578781 5.1:-6512149 MS.gene54200:CDS
GCACAAATGCTAGCAAAACA+TGG 0.581514 5.1:-6512263 MS.gene54200:CDS
AAGAAAGAGTGGGGAACAAG+TGG 0.590788 5.1:-6512578 MS.gene54200:CDS
CATGCAACTGAACTAACTGC+AGG 0.595551 5.1:-6512326 MS.gene54200:CDS
ATTGGTTAATCAAGTGAGGA+TGG 0.595555 5.1:-6512165 MS.gene54200:CDS
TCATTTGCAGGAAATTCAAG+TGG 0.596130 5.1:-6513280 MS.gene54200:intron
GGATATCTCAACTCCCCACA+TGG 0.597220 5.1:+6513249 None:intergenic
AAGTGGGACTAGGTCCATGT+GGG 0.602013 5.1:-6513263 MS.gene54200:CDS
GGCAATTGGGAAGAAAGAGT+GGG 0.609694 5.1:-6512588 MS.gene54200:CDS
CATTTGCAGGAAATTCAAGT+GGG 0.613333 5.1:-6513279 MS.gene54200:intron
CATCCTTGGAAGCATCAGCA+GGG 0.618285 5.1:-6512610 MS.gene54200:CDS
TCAAGCAAACTTGTTGAACA+TGG 0.618498 5.1:-6512449 MS.gene54200:CDS
TGTCTGTGTAAACCAACTCA+GGG 0.620140 5.1:+6513841 None:intergenic
CTGCAGGTTACTATAACACA+AGG 0.621880 5.1:-6512310 MS.gene54200:CDS
AATCCTGAATATATATCACT+GGG 0.633430 5.1:-6513804 MS.gene54200:CDS
AATAATCTGTAAATCTATCG+CGG 0.635987 5.1:+6513712 None:intergenic
TGGTGATTCGAATAGAGTAC+CGG 0.636351 5.1:-6514331 MS.gene54200:CDS
CAAGTGGGACTAGGTCCATG+TGG 0.641124 5.1:-6513264 MS.gene54200:CDS
AAGGATTGGTTAATCAAGTG+AGG 0.645377 5.1:-6512169 MS.gene54200:CDS
TTAGATACGGTAACAATGGG+AGG 0.652633 5.1:-6514291 MS.gene54200:CDS
GGTGAACAATTAGCATCACA+AGG 0.655544 5.1:+6512194 None:intergenic
AATGGCAACATCACAAACAC+CGG 0.660873 5.1:+6514312 None:intergenic
ATCCTTGGAAGCATCAGCAG+GGG 0.664828 5.1:-6512609 MS.gene54200:CDS
TTGTATTGACCAGAATCATG+AGG 0.670196 5.1:+6512554 None:intergenic
ATTTCTTCCATCACCCATGG+AGG 0.672048 5.1:+6513873 None:intergenic
ATGGCAACAAAGATGGCAGG+TGG 0.674756 5.1:-6512146 MS.gene54200:CDS
AGAATTCCAATGCTATGACA+AGG 0.682905 5.1:-6513181 MS.gene54200:intron
TCAATACAATCAATTTCCTG+AGG 0.689657 5.1:-6512540 MS.gene54200:CDS
TTTACACAGACAAATTAGGG+AGG 0.692025 5.1:-6513830 MS.gene54200:CDS
AGTGGGACTAGGTCCATGTG+GGG 0.709601 5.1:-6513262 MS.gene54200:CDS
CTCTATTCGAATCACCATCG+TGG 0.716638 5.1:+6514337 None:intergenic
GCAATTGGGAAGAAAGAGTG+GGG 0.730495 5.1:-6512587 MS.gene54200:CDS
TCTGTCACTCATAACCACGA+TGG 0.739469 5.1:-6514351 MS.gene54200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTCTAAATAATTTATATTT+AGG + chr5.1:6513403-6513422 None:intergenic 10.0%
!!! ATTAAATGATATAATTTTAC+GGG + chr5.1:6513426-6513445 None:intergenic 10.0%
!!! GATTAAATGATATAATTTTA+CGG + chr5.1:6513427-6513446 None:intergenic 10.0%
!!! TATTCTATTTTTATTCAATT+AGG + chr5.1:6512964-6512983 None:intergenic 10.0%
!! AAACAATTTCAAATATGATA+AGG - chr5.1:6513694-6513713 MS.gene54200:intron 15.0%
!! CTTATTTAAGAATAAATAAG+AGG - chr5.1:6514417-6514436 MS.gene54200:CDS 15.0%
!!! AATTCAATTTTTCCATATTA+AGG - chr5.1:6513008-6513027 MS.gene54200:intron 15.0%
!!! ATAAAAATCTAAGACTAATT+TGG - chr5.1:6512529-6512548 MS.gene54200:CDS 15.0%
!!! TTAAGATATTTTGCAATTAA+AGG + chr5.1:6513560-6513579 None:intergenic 15.0%
!! ACATTTGTTCAAAACTTTAA+CGG - chr5.1:6512870-6512889 MS.gene54200:intron 20.0%
!! GATAGATTTACAGATTATTT+GGG - chr5.1:6512746-6512765 MS.gene54200:intron 20.0%
!! TATATTGAATTTCACATGTA+TGG - chr5.1:6514217-6514236 MS.gene54200:CDS 20.0%
!!! GAGTTCAAAGAATATTTTTT+TGG - chr5.1:6513588-6513607 MS.gene54200:intron 20.0%
!!! GTCTAACACTAATATTATTT+TGG + chr5.1:6513338-6513357 None:intergenic 20.0%
!!! TAGTCTTAGATTTTTATGTT+TGG + chr5.1:6512526-6512545 None:intergenic 20.0%
! AAATCCTGAATATATATCAC+TGG - chr5.1:6512649-6512668 MS.gene54200:intron 25.0%
! AATAATCTGTAAATCTATCG+CGG + chr5.1:6512745-6512764 None:intergenic 25.0%
! AATCCTGAATATATATCACT+GGG - chr5.1:6512650-6512669 MS.gene54200:intron 25.0%
! ACTAACTATCATCCTTAATA+TGG + chr5.1:6513023-6513042 None:intergenic 25.0%
! ATTATAGAGAAAATCTTGTG+TGG + chr5.1:6513533-6513552 None:intergenic 25.0%
! ATTTGTTCAAAACTTTAACG+GGG - chr5.1:6512872-6512891 MS.gene54200:intron 25.0%
! CATTTGTTCAAAACTTTAAC+GGG - chr5.1:6512871-6512890 MS.gene54200:intron 25.0%
! CGATAGATTTACAGATTATT+TGG - chr5.1:6512745-6512764 MS.gene54200:intron 25.0%
! TAATATTCAACCACCAATTT+AGG - chr5.1:6512444-6512463 MS.gene54200:CDS 25.0%
! TGTAAAGAAAGACAAGAAAT+GGG - chr5.1:6512063-6512082 MS.gene54200:CDS 25.0%
! TGTTTCTTTCTGATTAATCA+AGG + chr5.1:6511906-6511925 None:intergenic 25.0%
! TTATGTTGGACACATAATTA+AGG - chr5.1:6514544-6514563 MS.gene54200:CDS 25.0%
!! CCAAAAATTAAACCATCTTT+TGG - chr5.1:6511974-6511993 MS.gene54200:CDS 25.0%
!! TAAGTACTTCATCAATTTTG+TGG - chr5.1:6512783-6512802 MS.gene54200:intron 25.0%
!! TTATCTAAGACATTACGTTA+AGG + chr5.1:6512938-6512957 None:intergenic 25.0%
!!! AGACATATTTTGTTGTAACT+AGG - chr5.1:6513354-6513373 MS.gene54200:intron 25.0%
!!! CCAAAAGATGGTTTAATTTT+TGG + chr5.1:6511977-6511996 None:intergenic 25.0%
!!! TAAAGTTTTGAACAAATGTG+TGG + chr5.1:6512869-6512888 None:intergenic 25.0%
AATAAATAAGAGGTTGCTTG+AGG - chr5.1:6514427-6514446 MS.gene54200:CDS 30.0%
AGATATGATTCAAGTGCTTA+TGG - chr5.1:6514359-6514378 MS.gene54200:CDS 30.0%
AGCCAAGTATCTAAATTACT+CGG + chr5.1:6512812-6512831 None:intergenic 30.0%
ATAAATAAGAGGTTGCTTGA+GGG - chr5.1:6514428-6514447 MS.gene54200:CDS 30.0%
ATGGTCCTATGAAGTATAAT+TGG - chr5.1:6512290-6512309 MS.gene54200:CDS 30.0%
CACACAAAAAATTGAAAGGT+AGG + chr5.1:6513485-6513504 None:intergenic 30.0%
CTGTAAAGAAAGACAAGAAA+TGG - chr5.1:6512062-6512081 MS.gene54200:CDS 30.0%
GAATTTCCTGCAAATGAATT+TGG + chr5.1:6513171-6513190 None:intergenic 30.0%
GGAGAATGATGTTATAATAG+AGG - chr5.1:6514565-6514584 MS.gene54200:CDS 30.0%
GGATGATAGTTAGTTATAAG+AGG - chr5.1:6513029-6513048 MS.gene54200:intron 30.0%
TACCGAGTAATTTAGATACT+TGG - chr5.1:6512807-6512826 MS.gene54200:intron 30.0%
TATAACACAAGGTTTCATGA+TGG - chr5.1:6514155-6514174 MS.gene54200:CDS 30.0%
TCAATACAATCAATTTCCTG+AGG - chr5.1:6513914-6513933 MS.gene54200:intron 30.0%
TCACATTTAAGAGCCTAAAT+TGG + chr5.1:6512460-6512479 None:intergenic 30.0%
TGATAATTGGAGGAAATTTG+TGG - chr5.1:6514451-6514470 MS.gene54200:CDS 30.0%
TGGTCCTATGAAGTATAATT+GGG - chr5.1:6512291-6512310 MS.gene54200:CDS 30.0%
TGGTTTACACAGACAAATTA+GGG - chr5.1:6512621-6512640 MS.gene54200:CDS 30.0%
TTATGACCAAATTCATTTGC+AGG - chr5.1:6513162-6513181 MS.gene54200:intron 30.0%
TTGGTTTACACAGACAAATT+AGG - chr5.1:6512620-6512639 MS.gene54200:CDS 30.0%
TTTATACCTTGTCATAGCAT+TGG + chr5.1:6513282-6513301 None:intergenic 30.0%
TTTCACATGTATGGAAATGA+AGG - chr5.1:6514226-6514245 MS.gene54200:CDS 30.0%
! AAAAGCATATTCCAAACAAG+TGG - chr5.1:6514050-6514069 MS.gene54200:intron 30.0%
! GTTATGTCTTTTCATCAATG+TGG - chr5.1:6512370-6512389 MS.gene54200:CDS 30.0%
! TTTTCAAAAGAGAAGGAACA+TGG - chr5.1:6513946-6513965 MS.gene54200:intron 30.0%
! TTTTGGACAAGAAACTTTGT+TGG + chr5.1:6511960-6511979 None:intergenic 30.0%
!! ACTGGATTTTTCAAAAGAGA+AGG - chr5.1:6513939-6513958 MS.gene54200:intron 30.0%
!! ACTTGTTTGGAATATGCTTT+TGG + chr5.1:6514051-6514070 None:intergenic 30.0%
AAACTATCTGCCAAAATAGC+TGG - chr5.1:6514077-6514096 MS.gene54200:CDS 35.0%
AATCAATTTCCTGAGGATAC+TGG - chr5.1:6513921-6513940 MS.gene54200:intron 35.0%
ACTTGATTAACCAATCCTTC+TGG + chr5.1:6514284-6514303 None:intergenic 35.0%
AGAATTCCAATGCTATGACA+AGG - chr5.1:6513273-6513292 MS.gene54200:CDS 35.0%
ATAGTTTCACTCCACTTGTT+TGG + chr5.1:6514064-6514083 None:intergenic 35.0%
ATGGAGATTTCTTCCTTGAT+TGG - chr5.1:6513979-6513998 MS.gene54200:intron 35.0%
ATTGGTTAATCAAGTGAGGA+TGG - chr5.1:6514289-6514308 MS.gene54200:CDS 35.0%
CATCCCAGTGATATATATTC+AGG + chr5.1:6512656-6512675 None:intergenic 35.0%
CATTTAAGAGCCTAAATTGG+TGG + chr5.1:6512457-6512476 None:intergenic 35.0%
CATTTGCAGGAAATTCAAGT+GGG - chr5.1:6513175-6513194 MS.gene54200:intron 35.0%
CCAAAATAGCTGGAATTCAT+TGG - chr5.1:6514087-6514106 MS.gene54200:CDS 35.0%
CCATTAGATACGGTAACAAT+GGG - chr5.1:6512160-6512179 MS.gene54200:CDS 35.0%
GCTTCCCAATTATACTTCAT+AGG + chr5.1:6512298-6512317 None:intergenic 35.0%
GGCACACACAAAAAATTGAA+AGG + chr5.1:6513489-6513508 None:intergenic 35.0%
GTTCAGATGGTACAAAAACA+TGG - chr5.1:6512331-6512350 MS.gene54200:CDS 35.0%
TAATTGTTCACCAGAAGGAT+TGG - chr5.1:6514271-6514290 MS.gene54200:CDS 35.0%
TATGGGACTGATCTTTATGT+TGG - chr5.1:6514530-6514549 MS.gene54200:CDS 35.0%
TCATTTGCAGGAAATTCAAG+TGG - chr5.1:6513174-6513193 MS.gene54200:intron 35.0%
TCCATTTGAGCACAACAATT+AGG + chr5.1:6513510-6513529 None:intergenic 35.0%
TGTGATGTTGCCATTAGATA+CGG - chr5.1:6512150-6512169 MS.gene54200:CDS 35.0%
TTCAGTTTGTGACCAAAAGA+TGG + chr5.1:6511989-6512008 None:intergenic 35.0%
TTGAAAAATCCAGTATCCTC+AGG + chr5.1:6513933-6513952 None:intergenic 35.0%
TTTACACAGACAAATTAGGG+AGG - chr5.1:6512624-6512643 MS.gene54200:intron 35.0%
TTTGCTAGCATTTGTGCTAT+TGG + chr5.1:6514188-6514207 None:intergenic 35.0%
! AGCAATGAATGCTAGTTTGA+TGG - chr5.1:6512204-6512223 MS.gene54200:CDS 35.0%
! ATGTCTTTTCATCAATGTGG+TGG - chr5.1:6512373-6512392 MS.gene54200:CDS 35.0%
! CCAATGAATTCCAGCTATTT+TGG + chr5.1:6514090-6514109 None:intergenic 35.0%
! TTGCTGAAGCTGATTCATAT+GGG - chr5.1:6514513-6514532 MS.gene54200:CDS 35.0%
! TTGTATTGACCAGAATCATG+AGG + chr5.1:6513903-6513922 None:intergenic 35.0%
! TTTGTTGTGAGTATGTCTGA+TGG - chr5.1:6514476-6514495 MS.gene54200:CDS 35.0%
!! AAGGATTGGTTAATCAAGTG+AGG - chr5.1:6514285-6514304 MS.gene54200:CDS 35.0%
!! TCAAGCAAACTTGTTGAACA+TGG - chr5.1:6514005-6514024 MS.gene54200:intron 35.0%
AATGGCAACATCACAAACAC+CGG + chr5.1:6512145-6512164 None:intergenic 40.0%
ACTTGGAAGTTTCCTGGAAT+TGG - chr5.1:6513250-6513269 MS.gene54200:CDS 40.0%
CATTGGAATTCTCCAATTCC+AGG + chr5.1:6513265-6513284 None:intergenic 40.0%
CCAAGGATGATCTCATATAC+TGG + chr5.1:6513833-6513852 None:intergenic 40.0%
CCAGTATATGAGATCATCCT+TGG - chr5.1:6513830-6513849 MS.gene54200:CDS 40.0%
CCCATTGTTACCGTATCTAA+TGG + chr5.1:6512163-6512182 None:intergenic 40.0%
CTGCAGGTTACTATAACACA+AGG - chr5.1:6514144-6514163 MS.gene54200:CDS 40.0%
GATGCTAATTGTTCACCAGA+AGG - chr5.1:6514266-6514285 MS.gene54200:CDS 40.0%
GCACAAATGCTAGCAAAACA+TGG - chr5.1:6514191-6514210 MS.gene54200:CDS 40.0%
GCCATTAGATACGGTAACAA+TGG - chr5.1:6512159-6512178 MS.gene54200:CDS 40.0%
GCCTAATTGTTGTGCTCAAA+TGG - chr5.1:6513506-6513525 MS.gene54200:intron 40.0%
GGAACATGGAACACAGAATA+TGG - chr5.1:6513960-6513979 MS.gene54200:intron 40.0%
GGTGAACAATTAGCATCACA+AGG + chr5.1:6514263-6514282 None:intergenic 40.0%
GTTTGCTTGAGTACCAATCA+AGG + chr5.1:6513995-6514014 None:intergenic 40.0%
TCCAAGTTCCATCAGTTTCA+GGG + chr5.1:6513237-6513256 None:intergenic 40.0%
TGGTGATTCGAATAGAGTAC+CGG - chr5.1:6512123-6512142 MS.gene54200:CDS 40.0%
TGTCTGTGTAAACCAACTCA+GGG + chr5.1:6512616-6512635 None:intergenic 40.0%
TTAACGGGGCTATATATCGT+CGG - chr5.1:6512886-6512905 MS.gene54200:intron 40.0%
TTAGATACGGTAACAATGGG+AGG - chr5.1:6512163-6512182 MS.gene54200:CDS 40.0%
TTCCAAGTTCCATCAGTTTC+AGG + chr5.1:6513238-6513257 None:intergenic 40.0%
TTGTCTGTGTAAACCAACTC+AGG + chr5.1:6512617-6512636 None:intergenic 40.0%
! AAGGAGTAATGGTTGATGCT+TGG - chr5.1:6512248-6512267 MS.gene54200:CDS 40.0%
! AGTAATGGTTGATGCTTGGT+GGG - chr5.1:6512252-6512271 MS.gene54200:CDS 40.0%
! CATCAATGTGGTGGAAATGT+TGG - chr5.1:6512382-6512401 MS.gene54200:CDS 40.0%
! CTTGCTGAAGCTGATTCATA+TGG - chr5.1:6514512-6514531 MS.gene54200:CDS 40.0%
! TGGGGTTTGGTTGAAAAAGA+TGG - chr5.1:6512271-6512290 MS.gene54200:CDS 40.0%
! TTATGCTGAGCTTGTTCAGA+TGG - chr5.1:6512318-6512337 MS.gene54200:CDS 40.0%
!! GGTCAAGTTTTGTCTACAAG+TGG - chr5.1:6514380-6514399 MS.gene54200:CDS 40.0%
!! GTTTTGAACAAATGTGTGGC+TGG + chr5.1:6512865-6512884 None:intergenic 40.0%
!! TGTCTGATGGTGGTAAACTA+AGG - chr5.1:6514489-6514508 MS.gene54200:CDS 40.0%
AAGAAAGAGTGGGGAACAAG+TGG - chr5.1:6513876-6513895 MS.gene54200:CDS 45.0%
AATCAGGAAGAACCCTGAGT+TGG - chr5.1:6512601-6512620 MS.gene54200:CDS 45.0%
ACAAGTGGACCTCATGATTC+TGG - chr5.1:6513891-6513910 MS.gene54200:intron 45.0%
ACCCTGAAACTGATGGAACT+TGG - chr5.1:6513233-6513252 MS.gene54200:CDS 45.0%
AGTGAGGATGGCAACAAAGA+TGG - chr5.1:6514301-6514320 MS.gene54200:CDS 45.0%
ATAGCATTCCTCTACCTCCA+TGG - chr5.1:6512567-6512586 MS.gene54200:CDS 45.0%
ATTTCTTCCATCACCCATGG+AGG + chr5.1:6512584-6512603 None:intergenic 45.0%
CAGGAAATTCAAGTGGGACT+AGG - chr5.1:6513181-6513200 MS.gene54200:intron 45.0%
CATGCAACTGAACTAACTGC+AGG - chr5.1:6514128-6514147 MS.gene54200:CDS 45.0%
CCATCAGTTTCAGGGTAAGA+TGG + chr5.1:6513229-6513248 None:intergenic 45.0%
CCATCTTACCCTGAAACTGA+TGG - chr5.1:6513226-6513245 MS.gene54200:CDS 45.0%
CTCTATTCGAATCACCATCG+TGG + chr5.1:6512120-6512139 None:intergenic 45.0%
CTGATTTCTTCCATCACCCA+TGG + chr5.1:6512587-6512606 None:intergenic 45.0%
GATGGAACTTGGAAGTTTCC+TGG - chr5.1:6513244-6513263 MS.gene54200:CDS 45.0%
GCAATTGGGAAGAAAGAGTG+GGG - chr5.1:6513867-6513886 MS.gene54200:CDS 45.0%
GCGGAAGCTTCTCATGTAAT+CGG + chr5.1:6512726-6512745 None:intergenic 45.0%
GGCAATTGGGAAGAAAGAGT+GGG - chr5.1:6513866-6513885 MS.gene54200:CDS 45.0%
GGTTGCTTGAGGGTGATAAT+TGG - chr5.1:6514438-6514457 MS.gene54200:CDS 45.0%
GTTGTGAGTATGTCTGATGG+TGG - chr5.1:6514479-6514498 MS.gene54200:CDS 45.0%
TAATCGGAGTAGACCTGAAG+TGG + chr5.1:6512710-6512729 None:intergenic 45.0%
TAGCATTCCTCTACCTCCAT+GGG - chr5.1:6512568-6512587 MS.gene54200:CDS 45.0%
TCTGTCACTCATAACCACGA+TGG - chr5.1:6512103-6512122 MS.gene54200:CDS 45.0%
TGCTGGAGTTGAAGGAGTAA+TGG - chr5.1:6512237-6512256 MS.gene54200:CDS 45.0%
TGCTTGAGGGTGATAATTGG+AGG - chr5.1:6514441-6514460 MS.gene54200:CDS 45.0%
! GAGTAATGGTTGATGCTTGG+TGG - chr5.1:6512251-6512270 MS.gene54200:CDS 45.0%
! GTAATGGTTGATGCTTGGTG+GGG - chr5.1:6512253-6512272 MS.gene54200:CDS 45.0%
!! CATGGGTGATGGAAGAAATC+AGG - chr5.1:6512585-6512604 MS.gene54200:CDS 45.0%
!! GAAATGTTGGTGACTCTTGC+AGG - chr5.1:6512395-6512414 MS.gene54200:CDS 45.0%
!! TTGAAGAGTGCTGGAGTTGA+AGG - chr5.1:6512229-6512248 MS.gene54200:CDS 45.0%
!! TTGATGGCTTTGAAGAGTGC+TGG - chr5.1:6512220-6512239 MS.gene54200:CDS 45.0%
AAGCATCAGCAGGGGCAATT+GGG - chr5.1:6513853-6513872 MS.gene54200:CDS 50.0%
AAGTGGGACTAGGTCCATGT+GGG - chr5.1:6513191-6513210 MS.gene54200:CDS 50.0%
AGCAGGAAGAACTCCACTTC+AGG - chr5.1:6512694-6512713 MS.gene54200:intron 50.0%
AGGATGGCAACAAAGATGGC+AGG - chr5.1:6514305-6514324 MS.gene54200:CDS 50.0%
ATGGCAACAAAGATGGCAGG+TGG - chr5.1:6514308-6514327 MS.gene54200:CDS 50.0%
GATTCAGTGCCTGTTCTAGC+AGG - chr5.1:6512677-6512696 MS.gene54200:intron 50.0%
GGAGTTCTTCCTGCTAGAAC+AGG + chr5.1:6512689-6512708 None:intergenic 50.0%
GGATATCTCAACTCCCCACA+TGG + chr5.1:6513208-6513227 None:intergenic 50.0%
GGCTATATATCGTCGGTCTC+AGG - chr5.1:6512893-6512912 MS.gene54200:intron 50.0%
GGGCAATTGGGAAGAAAGAG+TGG - chr5.1:6513865-6513884 MS.gene54200:CDS 50.0%
!! ATCCTTGGAAGCATCAGCAG+GGG - chr5.1:6513845-6513864 MS.gene54200:CDS 50.0%
!! CATCCTTGGAAGCATCAGCA+GGG - chr5.1:6513844-6513863 MS.gene54200:CDS 50.0%
!! TCATCCTTGGAAGCATCAGC+AGG - chr5.1:6513843-6513862 MS.gene54200:CDS 50.0%
AGTGGGACTAGGTCCATGTG+GGG - chr5.1:6513192-6513211 MS.gene54200:CDS 55.0%
ATGGCAGGTGGTGAACTTGC+TGG - chr5.1:6514320-6514339 MS.gene54200:CDS 55.0%
CAAGTGGGACTAGGTCCATG+TGG - chr5.1:6513190-6513209 MS.gene54200:CDS 55.0%
TCCATCACCCATGGAGGTAG+AGG + chr5.1:6512578-6512597 None:intergenic 55.0%
TCCTCTACCTCCATGGGTGA+TGG - chr5.1:6512574-6512593 MS.gene54200:CDS 55.0%
! GAAGCATCAGCAGGGGCAAT+TGG - chr5.1:6513852-6513871 MS.gene54200:CDS 55.0%
! GGTTGATGCTTGGTGGGGTT+TGG - chr5.1:6512258-6512277 MS.gene54200:CDS 55.0%
TGCCCCTGCTGATGCTTCCA+AGG + chr5.1:6513850-6513869 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 6511875 6514601 6511875 ID=MS.gene54200
chr5.1 mRNA 6511875 6514601 6511875 ID=MS.gene54200.t1;Parent=MS.gene54200
chr5.1 exon 6514060 6514601 6514060 ID=MS.gene54200.t1.exon1;Parent=MS.gene54200.t1
chr5.1 CDS 6514060 6514601 6514060 ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1
chr5.1 exon 6513695 6513905 6513695 ID=MS.gene54200.t1.exon2;Parent=MS.gene54200.t1
chr5.1 CDS 6513695 6513905 6513695 ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1
chr5.1 exon 6513182 6513292 6513182 ID=MS.gene54200.t1.exon3;Parent=MS.gene54200.t1
chr5.1 CDS 6513182 6513292 6513182 ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1
chr5.1 exon 6511875 6512642 6511875 ID=MS.gene54200.t1.exon4;Parent=MS.gene54200.t1
chr5.1 CDS 6511875 6512642 6511875 ID=cds.MS.gene54200.t1;Parent=MS.gene54200.t1
Gene Sequence

>MS.gene54200

ATGGCTCAAGCACTTGGTTTTTCAATTTCCTTGATTAATCAGAAAGAAACAAGAGTCTTAAAATCTCTTGATGATTTTTTATCCAACAAAGTTTCTTGTCCAAAAATTAAACCATCTTTTGGTCACAAACTGAAAGCAAAGAGTTCAATGCAAGAAACACATTTCACAACAGACAACAACAACTCTGCTGTAAAGAAAGACAAGAAATGGGAGAAGATTCATACGTCATCTGTCACTCATAACCACGATGGTGATTCGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGATACGGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAGAGTGCTGGAGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAAGTATAATTGGGAAGCTTATGCTGAGCTTGTTCAGATGGTACAAAAACATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGGTATGCAAATAACACTCTTGTTAAACATAATATTCAACCACCAATTTAGGCTCTTAAATGTGATGATACAAATAATTGCTTATTTTATAATCATAGTCTTGCTAGACCAAACATAAAAATCTAAGACTAATTTGGTCTGTGTTACATTTTATAGCATTCCTCTACCTCCATGGGTGATGGAAGAAATCAGGAAGAACCCTGAGTTGGTTTACACAGACAAATTAGGGAGGAGAAATCCTGAATATATATCACTGGGATGTGATTCAGTGCCTGTTCTAGCAGGAAGAACTCCACTTCAGGTCTACTCCGATTACATGAGAAGCTTCCGCGATAGATTTACAGATTATTTGGGCAATGTTATCATAGTAAGTACTTCATCAATTTTGTGGTTACCGAGTAATTTAGATACTTGGCTAAGAATTTTGTATAGTAGATAGTGTTATTTCCAGCCACACATTTGTTCAAAACTTTAACGGGGCTATATATCGTCGGTCTCAGGAGTAGAAATTCATGATCATCCTTAACGTAATGTCTTAGATAATGACCTAATTGAATAAAAATAGAATAAGAGAAAACACATGTATGACTCATAATTCAATTTTTCCATATTAAGGATGATAGTTAGTTATAAGAGGAATACTTTTTAGAGACATTTGTGATTATTATCTTTTTGACAGAGACACTATTTTTTTGTGATTGATGATAAACTGACTTGATGCATATGTTGCAATGTATAAAATTCTAATTATGACCAAATTCATTTGCAGGAAATTCAAGTGGGACTAGGTCCATGTGGGGAGTTGAGATATCCATCTTACCCTGAAACTGATGGAACTTGGAAGTTTCCTGGAATTGGAGAATTCCAATGCTATGACAAGGTATAAACTAAGAAAGACATAAATTTTTAGAATAAATAGTCCAAAATAATATTAGTGTTAGACATATTTTGTTGTAACTAGGAGAAATAATTAGTTGATTACAATCCTAAATATAAATTATTTAGACACCCGTAAAATTATATCATTTAATCATTAAAAAAAATTACTTCATTTATTATCTTTCTTTCCTACCTTTCAATTTTTTGTGTGTGCCTAATTGTTGTGCTCAAATGGACCACACAAGATTTTCTCTATAATTAAACCTTTAATTGCAAAATATCTTAATTGAAACAGAGTTCAAAGAATATTTTTTTGGTACAAAAGAGAATATTTTTTATTAATATCTAGATATTTTGTTGTTATGTCACATTTGAGATGTCTTTTTTTAGATACTAATATAAACAATTTCAAATATGATAAGGACATCTCAAATATGACATAAATTAAATATGAATAAAAGTTTGAATATGTAACTTAAAAAGACTAAGCTCAATTTCTTTTGAAAACAACTAAACTAAAATGACTTATTTGTCATCCAGTATATGAGATCATCCTTGGAAGCATCAGCAGGGGCAATTGGGAAGAAAGAGTGGGGAACAAGTGGACCTCATGATTCTGGTCAATACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGAGATTTCTTCCTTGATTGGTACTCAAGCAAACTTGTTGAACATGGTGAGAAAATCTTAGTATCAGCCAAAAGCATATTCCAAACAAGTGGAGTGAAACTATCTGCCAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCACATGCAACTGAACTAACTGCAGGTTACTATAACACAAGGTTTCATGATGGTTATATACCAATAGCACAAATGCTAGCAAAACATGGAGTTATATTGAATTTCACATGTATGGAAATGAAGGACAATGAACAACCTTGTGATGCTAATTGTTCACCAGAAGGATTGGTTAATCAAGTGAGGATGGCAACAAAGATGGCAGGTGGTGAACTTGCTGGTGAGAATGCATTAGAGAGATATGATTCAAGTGCTTATGGTCAAGTTTTGTCTACAAGTGGATTAAGTGCTTTTACTTATTTAAGAATAAATAAGAGGTTGCTTGAGGGTGATAATTGGAGGAAATTTGTGGATTTTGTTGTGAGTATGTCTGATGGTGGTAAACTAAGGCTTGCTGAAGCTGATTCATATGGGACTGATCTTTATGTTGGACACATAATTAAGGAGAATGATGTTATAATAGAGGTTGCTCTTGTGTGA

Protein sequence

>MS.gene54200.t1

MAQALGFSISLINQKETRVLKSLDDFLSNKVSCPKIKPSFGHKLKAKSSMQETHFTTDNNNSAVKKDKKWEKIHTSSVTHNHDGDSNRVPVFVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVMEEIRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWKFPGIGEFQCYDKYMRSSLEASAGAIGKKEWGTSGPHDSGQYNQFPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGEKILVSAKSIFQTSGVKLSAKIAGIHWHYNARSHATELTAGYYNTRFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPCDANCSPEGLVNQVRMATKMAGGELAGENALERYDSSAYGQVLSTSGLSAFTYLRINKRLLEGDNWRKFVDFVVSMSDGGKLRLAEADSYGTDLYVGHIIKENDVIIEVALV