Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059511.t1 | XP_003607906.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.30E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059511.t1 | Q9SSL1 | 55.5 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 9.7e-49 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059511.t1 | G7JJZ3 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 4.6e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052077 | MS.gene059511 | 0.84762 | 1.03E-59 | -1.69E-46 |
| MS.gene054930 | MS.gene059511 | 0.832062 | 1.17E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene059511 | 0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene059511 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene059511 | 0.802959 | 4.38E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene059511 | 0.840824 | 6.89E-58 | -1.69E-46 |
| MS.gene059511 | MS.gene06652 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene068946 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene070829 | 0.820115 | 8.14E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene070831 | 0.827659 | 1.38E-54 | -1.69E-46 |
| MS.gene059511 | MS.gene072659 | -0.806409 | 8.34E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene21506 | 0.813555 | 2.41E-51 | -1.69E-46 |
| MS.gene059511 | MS.gene21508 | 0.8068 | 6.90E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene21509 | 0.821256 | 4.45E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene22691 | 0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene28853 | -0.817791 | 2.75E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene29000 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene29986 | 0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene059511 | MS.gene31116 | 0.863805 | 1.91E-64 | -1.69E-46 |
| MS.gene059511 | MS.gene31671 | 0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene35503 | -0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene40031 | 0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene40815 | 0.807889 | 4.05E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene42668 | 0.801205 | 1.00E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene45533 | 0.859713 | 3.42E-63 | -1.69E-46 |
| MS.gene059511 | MS.gene52512 | 0.823838 | 1.12E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene54200 | 0.83607 | 1.16E-56 | -1.69E-46 |
| MS.gene059511 | MS.gene54201 | 0.829427 | 5.18E-55 | -1.69E-46 |
| MS.gene059511 | MS.gene54606 | 0.815607 | 8.48E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene55041 | 0.858127 | 1.02E-62 | -1.69E-46 |
| MS.gene059511 | MS.gene56073 | 0.941431 | 4.21E-101 | -1.69E-46 |
| MS.gene059511 | MS.gene56278 | 0.80925 | 2.08E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene56404 | 0.928423 | 2.95E-92 | -1.69E-46 |
| MS.gene059511 | MS.gene56488 | 0.829342 | 5.43E-55 | -1.69E-46 |
| MS.gene059511 | MS.gene56490 | 0.818762 | 1.66E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene57950 | 0.831437 | 1.67E-55 | -1.69E-46 |
| MS.gene059511 | MS.gene57951 | 0.821412 | 4.09E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene60024 | 0.822143 | 2.77E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene62888 | -0.811438 | 7.00E-51 | -1.69E-46 |
| MS.gene059511 | MS.gene63883 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene65786 | 0.810254 | 1.26E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene71929 | -0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene71931 | -0.812518 | 4.07E-51 | -1.69E-46 |
| MS.gene059511 | MS.gene72142 | 0.802705 | 4.94E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene72343 | 0.800043 | 1.73E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene73759 | 0.847724 | 9.65E-60 | -1.69E-46 |
| MS.gene059511 | MS.gene75349 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene059511 | MS.gene76514 | 0.804778 | 1.83E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene78405 | 0.851246 | 1.01E-60 | -1.69E-46 |
| MS.gene059511 | MS.gene80157 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene81387 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene82358 | 0.829966 | 3.83E-55 | -1.69E-46 |
| MS.gene059511 | MS.gene82939 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene84401 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene84404 | 0.825732 | 3.99E-54 | -1.69E-46 |
| MS.gene059511 | MS.gene85129 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene85520 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene87170 | 0.823641 | 1.24E-53 | -1.69E-46 |
| MS.gene059511 | MS.gene90411 | 0.851169 | 1.06E-60 | -1.69E-46 |
| MS.gene059511 | MS.gene91810 | -0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene93743 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene95457 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene97268 | 0.851979 | 6.23E-61 | -1.69E-46 |
| MS.gene059511 | MS.gene97270 | 0.801473 | 8.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059511.t1 | MTR_4g084280 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.01e-123 | 343 |
| MS.gene059511.t1 | MTR_1g031650 | 66.871 | 163 | 53 | 1 | 3 | 164 | 4 | 166 | 1.59e-76 | 226 |
| MS.gene059511.t1 | MTR_3g067585 | 54.601 | 163 | 74 | 0 | 1 | 163 | 1 | 163 | 4.46e-64 | 194 |
| MS.gene059511.t1 | MTR_1g031650 | 69.531 | 128 | 39 | 0 | 37 | 164 | 2 | 129 | 4.24e-62 | 188 |
| MS.gene059511.t1 | MTR_8g107340 | 51.220 | 164 | 80 | 0 | 1 | 164 | 17 | 180 | 7.32e-58 | 179 |
| MS.gene059511.t1 | MTR_2g011590 | 51.235 | 162 | 79 | 0 | 3 | 164 | 2 | 163 | 1.75e-57 | 177 |
| MS.gene059511.t1 | MTR_6g069470 | 49.390 | 164 | 83 | 0 | 1 | 164 | 13 | 176 | 9.60e-56 | 174 |
| MS.gene059511.t1 | MTR_8g088320 | 40.000 | 160 | 95 | 1 | 1 | 159 | 161 | 320 | 4.07e-35 | 125 |
| MS.gene059511.t1 | MTR_2g030230 | 38.889 | 162 | 94 | 3 | 1 | 159 | 168 | 327 | 5.29e-32 | 117 |
| MS.gene059511.t1 | MTR_3g017500 | 37.952 | 166 | 94 | 2 | 1 | 161 | 209 | 370 | 7.66e-31 | 115 |
| MS.gene059511.t1 | MTR_8g038400 | 37.654 | 162 | 100 | 1 | 1 | 161 | 206 | 367 | 1.72e-30 | 114 |
| MS.gene059511.t1 | MTR_3g017500 | 37.952 | 166 | 94 | 2 | 1 | 161 | 239 | 400 | 2.19e-30 | 114 |
| MS.gene059511.t1 | MTR_2g027100 | 38.158 | 152 | 92 | 1 | 1 | 150 | 1 | 152 | 2.11e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059511.t1 | AT1G70810 | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.49e-63 | 192 |
| MS.gene059511.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.16e-61 | 188 |
| MS.gene059511.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.16e-61 | 188 |
| MS.gene059511.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 37 | 200 | 1.41e-61 | 189 |
| MS.gene059511.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene059511.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene059511.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene059511.t1 | AT3G17980 | 51.829 | 164 | 79 | 0 | 1 | 164 | 13 | 176 | 1.29e-58 | 181 |
| MS.gene059511.t1 | AT1G23140 | 51.852 | 162 | 78 | 0 | 1 | 162 | 1 | 162 | 3.19e-58 | 179 |
| MS.gene059511.t1 | AT1G73580 | 48.780 | 164 | 84 | 0 | 1 | 164 | 4 | 167 | 5.68e-58 | 179 |
| MS.gene059511.t1 | AT2G01540 | 53.659 | 164 | 69 | 2 | 5 | 166 | 6 | 164 | 1.10e-57 | 179 |
| MS.gene059511.t1 | AT1G70800 | 50.955 | 157 | 77 | 0 | 1 | 157 | 10 | 166 | 2.88e-55 | 172 |
| MS.gene059511.t1 | AT1G66360 | 45.402 | 174 | 93 | 1 | 1 | 172 | 1 | 174 | 2.79e-53 | 167 |
| MS.gene059511.t1 | AT5G37740 | 46.707 | 167 | 86 | 1 | 1 | 164 | 1 | 167 | 1.24e-51 | 163 |
| MS.gene059511.t1 | AT5G37740 | 44.068 | 177 | 86 | 2 | 1 | 164 | 1 | 177 | 3.37e-48 | 154 |
| MS.gene059511.t1 | AT1G70790 | 55.385 | 130 | 56 | 1 | 39 | 166 | 3 | 132 | 3.51e-46 | 148 |
| MS.gene059511.t1 | AT1G48590 | 45.509 | 167 | 56 | 2 | 1 | 167 | 37 | 168 | 3.10e-43 | 141 |
| MS.gene059511.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 140 | 297 | 2.75e-34 | 122 |
| MS.gene059511.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene059511.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene059511.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene059511.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene059511.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.01e-33 | 122 |
| MS.gene059511.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.01e-33 | 122 |
| MS.gene059511.t1 | AT3G07940 | 39.506 | 162 | 97 | 1 | 1 | 161 | 224 | 385 | 2.78e-32 | 119 |
| MS.gene059511.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene059511.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene059511.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene059511.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
Find 36 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCTTAAACTCATTTCT+TGG | 0.237962 | 4.4:-27520122 | None:intergenic |
| TTTCACTGTGGACGACAAAA+TGG | 0.248123 | 4.4:+27519945 | MS.gene059511:CDS |
| GTCAGTTCTTCATTCCATTC+AGG | 0.282274 | 4.4:-27519118 | None:intergenic |
| ATCTTCACACATTGGAGATA+TGG | 0.313339 | 4.4:-27519991 | None:intergenic |
| GTTTCGATGGCAAACATTCT+AGG | 0.356912 | 4.4:+27518731 | None:intergenic |
| GCTAGGCAATTAGTCGTATC+TGG | 0.362744 | 4.4:-27520060 | None:intergenic |
| GTCTTGACTACATGTCCATC+TGG | 0.383427 | 4.4:-27520030 | None:intergenic |
| CTCGGATAAGCCTTTGCCTT+CGG | 0.389439 | 4.4:-27520202 | None:intergenic |
| TCCATGGTGACAAGAACATA+AGG | 0.466228 | 4.4:-27518818 | None:intergenic |
| CCATACGCAGCTACTCTCTT+CGG | 0.489124 | 4.4:-27520082 | None:intergenic |
| CTAACTAACTTGTTCTTCCA+TGG | 0.492512 | 4.4:-27518834 | None:intergenic |
| AGTAGCTGCGTATGGAGAGA+TGG | 0.493455 | 4.4:+27520090 | MS.gene059511:CDS |
| AAGATAACTGCCATCCTGAA+TGG | 0.495110 | 4.4:+27519104 | MS.gene059511:CDS |
| TGTTAACACACCAATACATC+TGG | 0.500731 | 4.4:+27519156 | MS.gene059511:CDS |
| TTCACTGTGGACGACAAAAT+GGG | 0.505157 | 4.4:+27519946 | MS.gene059511:CDS |
| ATATCTCCAATGTGTGAAGA+TGG | 0.506001 | 4.4:+27519993 | MS.gene059511:CDS |
| TGAGTACTGACCAGATGTAT+TGG | 0.524936 | 4.4:-27519166 | None:intergenic |
| TATCTCCAATGTGTGAAGAT+GGG | 0.525049 | 4.4:+27519994 | MS.gene059511:CDS |
| CCGAAGAGAGTAGCTGCGTA+TGG | 0.539890 | 4.4:+27520082 | MS.gene059511:CDS |
| GACAAGAACATAAGGGTCGC+TGG | 0.578982 | 4.4:-27518810 | None:intergenic |
| AGATTGAGAAATGTTGACTC+TGG | 0.584076 | 4.4:+27520138 | MS.gene059511:CDS |
| CCCTTATGTTCTTGTCACCA+TGG | 0.587591 | 4.4:+27518817 | MS.gene059511:CDS |
| CCATGGTGACAAGAACATAA+GGG | 0.590675 | 4.4:-27518817 | None:intergenic |
| CGCAGCTACTCTCTTCGGCT+AGG | 0.597984 | 4.4:-27520077 | None:intergenic |
| GTTACAGAATCCGAAGGCAA+AGG | 0.605128 | 4.4:+27520192 | MS.gene059511:CDS |
| AAGTACTAGTCGAAATTGAG+TGG | 0.607422 | 4.4:+27520163 | MS.gene059511:CDS |
| TCTTGACTACATGTCCATCT+GGG | 0.611492 | 4.4:-27520029 | None:intergenic |
| GGGTTGAGCGATCTCCCAGA+TGG | 0.612527 | 4.4:+27520015 | MS.gene059511:CDS |
| GTTCTTCATTCCATTCAGGA+TGG | 0.627122 | 4.4:-27519114 | None:intergenic |
| ATCTCCAATGTGTGAAGATG+GGG | 0.633945 | 4.4:+27519995 | MS.gene059511:CDS |
| TCAACCCCATCTTCACACAT+TGG | 0.658196 | 4.4:-27519999 | None:intergenic |
| CGACAAAGACACTTTCACTG+TGG | 0.661032 | 4.4:+27519933 | MS.gene059511:CDS |
| GTACTCCTAAAACTCAACCT+CGG | 0.669415 | 4.4:-27520220 | None:intergenic |
| ATTGATGTTACAGAATCCGA+AGG | 0.687927 | 4.4:+27520186 | MS.gene059511:CDS |
| CGAAGGCAAAGGCTTATCCG+AGG | 0.695987 | 4.4:+27520203 | MS.gene059511:CDS |
| TCGCTGGTACGAGAATCATG+AGG | 0.744769 | 4.4:-27518794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAGGAAAAA+TGG | + | chr4.4:27519234-27519253 | MS.gene059511:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4.4:27519235-27519254 | MS.gene059511:intron | 10.0% |
| !! | CAAAAGAGAAAATAAATAAA+AGG | + | chr4.4:27519226-27519245 | MS.gene059511:intron | 15.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4.4:27519054-27519073 | MS.gene059511:intron | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4.4:27519482-27519501 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4.4:27519481-27519500 | None:intergenic | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4.4:27519452-27519471 | None:intergenic | 15.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4.4:27519314-27519333 | None:intergenic | 20.0% |
| !!! | ACTAAGATCTTTCTTTTTAT+TGG | + | chr4.4:27518995-27519014 | MS.gene059511:intron | 20.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4.4:27518915-27518934 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4.4:27519854-27519873 | None:intergenic | 20.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4.4:27519881-27519900 | None:intergenic | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4.4:27519759-27519778 | MS.gene059511:intron | 25.0% |
| ! | ATTGAGATTTGAATAACCAT+AGG | + | chr4.4:27519607-27519626 | MS.gene059511:intron | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4.4:27520125-27520144 | None:intergenic | 25.0% |
| ! | TTCTGCAACTTAAAAAAAGT+TGG | - | chr4.4:27519196-27519215 | None:intergenic | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4.4:27519355-27519374 | MS.gene059511:intron | 25.0% |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4.4:27519707-27519726 | MS.gene059511:intron | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4.4:27519374-27519393 | None:intergenic | 30.0% | |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4.4:27518758-27518777 | MS.gene059511:CDS | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4.4:27519874-27519893 | MS.gene059511:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4.4:27519513-27519532 | None:intergenic | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4.4:27519877-27519896 | MS.gene059511:intron | 30.0% | |
| TCCAAATTTCAATCAGTTCT+TGG | - | chr4.4:27518940-27518959 | None:intergenic | 30.0% | |
| TCCAAGAACTGATTGAAATT+TGG | + | chr4.4:27518936-27518955 | MS.gene059511:intron | 30.0% | |
| TGAATAACCATAGGATCAAA+GGG | + | chr4.4:27519616-27519635 | MS.gene059511:intron | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4.4:27519375-27519394 | MS.gene059511:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4.4:27519721-27519740 | None:intergenic | 30.0% | |
| TTGAATAACCATAGGATCAA+AGG | + | chr4.4:27519615-27519634 | MS.gene059511:intron | 30.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4.4:27519639-27519658 | MS.gene059511:intron | 35.0% | |
| AAGTACTAGTCGAAATTGAG+TGG | + | chr4.4:27520163-27520182 | MS.gene059511:CDS | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4.4:27519993-27520012 | MS.gene059511:CDS | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4.4:27519994-27520013 | None:intergenic | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4.4:27520186-27520205 | MS.gene059511:CDS | 35.0% | |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4.4:27519561-27519580 | MS.gene059511:intron | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4.4:27519994-27520013 | MS.gene059511:CDS | 35.0% | |
| TGTTAACACACCAATACATC+TGG | + | chr4.4:27519156-27519175 | MS.gene059511:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4.4:27520138-27520157 | MS.gene059511:CDS | 35.0% |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4.4:27519563-27519582 | None:intergenic | 35.0% |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4.4:27518837-27518856 | None:intergenic | 35.0% |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4.4:27519104-27519123 | MS.gene059511:CDS | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4.4:27519995-27520014 | MS.gene059511:CDS | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4.4:27518820-27518839 | None:intergenic | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4.4:27519818-27519837 | MS.gene059511:intron | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4.4:27519121-27519140 | None:intergenic | 40.0% | |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4.4:27519645-27519664 | MS.gene059511:intron | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4.4:27519117-27519136 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4.4:27518821-27518840 | None:intergenic | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4.4:27520032-27520051 | None:intergenic | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4.4:27519817-27519836 | MS.gene059511:intron | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4.4:27519946-27519965 | MS.gene059511:CDS | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4.4:27519945-27519964 | MS.gene059511:CDS | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4.4:27519169-27519188 | None:intergenic | 40.0% |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4.4:27518817-27518836 | MS.gene059511:CDS | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4.4:27519933-27519952 | MS.gene059511:CDS | 45.0% | |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4.4:27519626-27519645 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4.4:27520063-27520082 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4.4:27520033-27520052 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4.4:27520192-27520211 | MS.gene059511:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4.4:27520002-27520021 | None:intergenic | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4.4:27519575-27519594 | None:intergenic | 45.0% |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4.4:27520090-27520109 | MS.gene059511:CDS | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4.4:27520085-27520104 | None:intergenic | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4.4:27520205-27520224 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4.4:27518813-27518832 | None:intergenic | 50.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4.4:27518797-27518816 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4.4:27519831-27519850 | None:intergenic | 50.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4.4:27520082-27520101 | MS.gene059511:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4.4:27520203-27520222 | MS.gene059511:CDS | 55.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4.4:27520080-27520099 | None:intergenic | 60.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4.4:27520015-27520034 | MS.gene059511:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 27518737 | 27520236 | 27518737 | ID=MS.gene059511 |
| chr4.4 | mRNA | 27518737 | 27520236 | 27518737 | ID=MS.gene059511.t1;Parent=MS.gene059511 |
| chr4.4 | exon | 27518737 | 27518847 | 27518737 | ID=MS.gene059511.t1.exon1;Parent=MS.gene059511.t1 |
| chr4.4 | CDS | 27518737 | 27518847 | 27518737 | ID=cds.MS.gene059511.t1;Parent=MS.gene059511.t1 |
| chr4.4 | exon | 27519082 | 27519177 | 27519082 | ID=MS.gene059511.t1.exon2;Parent=MS.gene059511.t1 |
| chr4.4 | CDS | 27519082 | 27519177 | 27519082 | ID=cds.MS.gene059511.t1;Parent=MS.gene059511.t1 |
| chr4.4 | exon | 27519925 | 27520236 | 27519925 | ID=MS.gene059511.t1.exon3;Parent=MS.gene059511.t1 |
| chr4.4 | CDS | 27519925 | 27520236 | 27519925 | ID=cds.MS.gene059511.t1;Parent=MS.gene059511.t1 |
| Gene Sequence |
| Protein sequence |
