Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54202.t1 | XP_003611409.1 | 98.6 | 293 | 4 | 0 | 7 | 299 | 250 | 542 | 1.50E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54202.t1 | O23553 | 70.7 | 300 | 80 | 3 | 7 | 299 | 249 | 547 | 4.5e-126 | 452.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54202.t1 | G7JYN3 | 98.6 | 293 | 4 | 0 | 7 | 299 | 250 | 542 | 1.1e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene54202 | 0.818226 | 2.19E-52 | -1.69E-46 |
| MS.gene052590 | MS.gene54202 | 0.809994 | 1.44E-50 | -1.69E-46 |
| MS.gene055946 | MS.gene54202 | 0.800506 | 1.40E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54202.t1 | MTR_5g013640 | 98.299 | 294 | 5 | 0 | 7 | 300 | 250 | 543 | 0.0 | 606 |
| MS.gene54202.t1 | MTR_5g013620 | 94.218 | 294 | 15 | 1 | 7 | 300 | 252 | 543 | 0.0 | 584 |
| MS.gene54202.t1 | MTR_4g099110 | 74.403 | 293 | 68 | 2 | 7 | 292 | 241 | 533 | 2.22e-161 | 460 |
| MS.gene54202.t1 | MTR_6g477780 | 62.868 | 272 | 89 | 2 | 6 | 265 | 80 | 351 | 3.14e-126 | 365 |
| MS.gene54202.t1 | MTR_4g045667 | 50.370 | 270 | 118 | 3 | 6 | 262 | 176 | 442 | 1.00e-87 | 271 |
| MS.gene54202.t1 | MTR_2g089030 | 48.327 | 269 | 123 | 3 | 7 | 262 | 250 | 515 | 1.67e-79 | 252 |
| MS.gene54202.t1 | MTR_8g099775 | 43.066 | 274 | 144 | 4 | 8 | 269 | 243 | 516 | 5.28e-69 | 224 |
| MS.gene54202.t1 | MTR_7g077410 | 44.195 | 267 | 133 | 5 | 8 | 262 | 430 | 692 | 9.48e-62 | 208 |
| MS.gene54202.t1 | MTR_2g020240 | 39.852 | 271 | 156 | 3 | 8 | 274 | 108 | 375 | 1.06e-60 | 198 |
| MS.gene54202.t1 | MTR_2g020240 | 39.852 | 271 | 156 | 3 | 8 | 274 | 243 | 510 | 3.61e-59 | 197 |
| MS.gene54202.t1 | MTR_5g026210 | 38.060 | 268 | 150 | 6 | 8 | 265 | 383 | 644 | 4.85e-53 | 184 |
| MS.gene54202.t1 | MTR_5g026210 | 44.961 | 129 | 65 | 4 | 8 | 136 | 383 | 505 | 2.22e-30 | 120 |
| MS.gene54202.t1 | MTR_5g026210 | 50.000 | 80 | 38 | 2 | 8 | 87 | 383 | 460 | 2.63e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54202.t1 | AT4G17090 | 70.199 | 302 | 82 | 3 | 6 | 300 | 248 | 548 | 1.15e-158 | 454 |
| MS.gene54202.t1 | AT3G23920 | 64.234 | 274 | 84 | 2 | 6 | 265 | 268 | 541 | 3.97e-125 | 369 |
| MS.gene54202.t1 | AT4G15210 | 49.259 | 270 | 121 | 3 | 6 | 262 | 125 | 391 | 1.21e-85 | 264 |
| MS.gene54202.t1 | AT4G15210 | 49.259 | 270 | 121 | 3 | 6 | 262 | 125 | 391 | 1.21e-85 | 264 |
| MS.gene54202.t1 | AT4G15210 | 49.259 | 270 | 121 | 3 | 6 | 262 | 178 | 444 | 2.87e-85 | 265 |
| MS.gene54202.t1 | AT4G15210 | 55.357 | 224 | 97 | 2 | 6 | 229 | 178 | 398 | 5.17e-83 | 256 |
| MS.gene54202.t1 | AT2G32290 | 48.327 | 269 | 124 | 4 | 6 | 262 | 241 | 506 | 6.06e-81 | 256 |
| MS.gene54202.t1 | AT5G55700 | 44.815 | 270 | 136 | 3 | 7 | 263 | 96 | 365 | 1.72e-79 | 246 |
| MS.gene54202.t1 | AT4G00490 | 47.464 | 276 | 129 | 5 | 7 | 270 | 259 | 530 | 1.52e-77 | 246 |
| MS.gene54202.t1 | AT5G55700 | 44.815 | 270 | 136 | 3 | 7 | 263 | 259 | 528 | 1.56e-77 | 246 |
| MS.gene54202.t1 | AT2G45880 | 42.424 | 264 | 136 | 5 | 8 | 259 | 413 | 672 | 2.07e-59 | 201 |
| MS.gene54202.t1 | AT5G45300 | 39.033 | 269 | 147 | 7 | 8 | 265 | 420 | 682 | 3.26e-50 | 176 |
| MS.gene54202.t1 | AT5G45300 | 39.033 | 269 | 147 | 7 | 8 | 265 | 418 | 680 | 3.53e-50 | 176 |
| MS.gene54202.t1 | AT5G45300 | 39.033 | 269 | 147 | 7 | 8 | 265 | 434 | 696 | 3.90e-50 | 176 |
| MS.gene54202.t1 | AT5G18670 | 37.643 | 263 | 151 | 3 | 8 | 263 | 246 | 502 | 1.86e-45 | 161 |
Find 76 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAGTTCCTTCAGTTTC+AGG | 0.137478 | 5.1:+6567833 | None:intergenic |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.1:+6567373 | None:intergenic |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5.1:-6567630 | MS.gene54202:intron |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5.1:+6567412 | None:intergenic |
| TGGACACATTAAAGCAATTA+AGG | 0.267776 | 5.1:-6566910 | MS.gene54202:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.1:-6567818 | MS.gene54202:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.1:-6567500 | MS.gene54202:CDS |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | 5.1:-6567022 | MS.gene54202:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.1:-6567539 | MS.gene54202:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.321608 | 5.1:-6566948 | MS.gene54202:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5.1:+6567806 | None:intergenic |
| GAAGCATCAGCTGCCGCAAT+TGG | 0.335419 | 5.1:-6567608 | MS.gene54202:CDS |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5.1:+6567399 | None:intergenic |
| ACAAGTGGACCCCATGATTC+AGG | 0.347118 | 5.1:-6567569 | MS.gene54202:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.1:-6567481 | MS.gene54202:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.1:+6567275 | None:intergenic |
| GAAGGAACTTGGAAGTTTCC+AGG | 0.362863 | 5.1:-6567824 | MS.gene54202:CDS |
| CAGGAAATTCAAGTGGGACT+TGG | 0.366525 | 5.1:-6567887 | MS.gene54202:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.1:-6567101 | MS.gene54202:CDS |
| ACTAAGACTTGATGCACATT+TGG | 0.400626 | 5.1:-6567947 | None:intergenic |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.1:-6567373 | MS.gene54202:CDS |
| TCCAAGTTCCTTCAGTTTCA+GGG | 0.423547 | 5.1:+6567834 | None:intergenic |
| ACTTGCTGGTGAGAATGCTT+TGG | 0.442476 | 5.1:-6567126 | MS.gene54202:CDS |
| CCGCAATTGGGAAGAAAGAA+TGG | 0.442569 | 5.1:-6567595 | MS.gene54202:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.443560 | 5.1:-6567009 | MS.gene54202:CDS |
| CCTTCAGTTTCAGGGTAAGA+TGG | 0.448441 | 5.1:+6567842 | None:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5.1:-6567234 | MS.gene54202:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.1:-6567383 | MS.gene54202:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5.1:-6566930 | MS.gene54202:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5.1:+6567789 | None:intergenic |
| AAGATGGCAACCAAGATTGC+GGG | 0.457404 | 5.1:-6567155 | MS.gene54202:CDS |
| AAGTTCACCACCCGCAATCT+TGG | 0.459671 | 5.1:+6567145 | None:intergenic |
| ATTGCGGGTGGTGAACTTGC+TGG | 0.464723 | 5.1:-6567140 | MS.gene54202:CDS |
| ACTTGATTCACCAATCCTTC+CGG | 0.472396 | 5.1:+6567179 | None:intergenic |
| GATTGTATTGACCTGAATCA+TGG | 0.478768 | 5.1:+6567558 | None:intergenic |
| CGCAATTGGGAAGAAAGAAT+GGG | 0.478886 | 5.1:-6567594 | MS.gene54202:CDS |
| TTTCAAAATCTGATTCATAT+GGG | 0.479314 | 5.1:-6566947 | MS.gene54202:CDS |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5.1:-6567243 | MS.gene54202:CDS |
| ACCCTGAAACTGAAGGAACT+TGG | 0.488235 | 5.1:-6567835 | MS.gene54202:CDS |
| AAGCATCAGCTGCCGCAATT+GGG | 0.510467 | 5.1:-6567607 | MS.gene54202:CDS |
| TAATTGTTCACCGGAAGGAT+TGG | 0.517053 | 5.1:-6567189 | MS.gene54202:CDS |
| CCATTCTTTCTTCCCAATTG+CGG | 0.534058 | 5.1:+6567595 | None:intergenic |
| ATTGGTGAATCAAGTGAAGA+TGG | 0.538317 | 5.1:-6567171 | MS.gene54202:CDS |
| ATAAACAAGAGGTTGCTTGA+GGG | 0.540389 | 5.1:-6567032 | MS.gene54202:CDS |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.540642 | 5.1:-6567019 | MS.gene54202:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.1:+6567468 | None:intergenic |
| CTTATTTAAGAATAAACAAG+AGG | 0.556225 | 5.1:-6567043 | MS.gene54202:CDS |
| CATGCTAATTGTTCACCGGA+AGG | 0.556485 | 5.1:-6567194 | MS.gene54202:CDS |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5.1:-6567410 | MS.gene54202:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.1:-6567305 | MS.gene54202:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5.1:-6567316 | MS.gene54202:CDS |
| ATTGTATTGACCTGAATCAT+GGG | 0.566012 | 5.1:+6567559 | None:intergenic |
| TTGCCATGCTAATTGTTCAC+CGG | 0.569138 | 5.1:-6567198 | MS.gene54202:CDS |
| AATAAACAAGAGGTTGCTTG+AGG | 0.573981 | 5.1:-6567033 | MS.gene54202:CDS |
| AAGTGGGACTTGGTCCATGT+GGG | 0.575092 | 5.1:-6567877 | MS.gene54202:CDS |
| CAAGTGGGACTTGGTCCATG+TGG | 0.580992 | 5.1:-6567878 | MS.gene54202:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.1:-6567269 | MS.gene54202:CDS |
| GAAGATGGCAACCAAGATTG+CGG | 0.585914 | 5.1:-6567156 | MS.gene54202:CDS |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5.1:-6567332 | MS.gene54202:CDS |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | 5.1:-6567584 | MS.gene54202:CDS |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5.1:-6567894 | MS.gene54202:intron |
| CCATCTTACCCTGAAACTGA+AGG | 0.596657 | 5.1:-6567842 | MS.gene54202:CDS |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.1:+6567863 | None:intergenic |
| AGTGGGACTTGGTCCATGTG+GGG | 0.599653 | 5.1:-6567876 | MS.gene54202:CDS |
| GGTGAACAATTAGCATGGCA+AGG | 0.606783 | 5.1:+6567200 | None:intergenic |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5.1:-6566984 | MS.gene54202:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.1:-6567455 | MS.gene54202:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5.1:-6566981 | MS.gene54202:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5.1:-6567893 | MS.gene54202:intron |
| CTTCCGGTGAACAATTAGCA+TGG | 0.643708 | 5.1:+6567195 | None:intergenic |
| ATGGCAACCAAGATTGCGGG+TGG | 0.673251 | 5.1:-6567152 | MS.gene54202:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5.1:-6567546 | MS.gene54202:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5.1:-6567795 | MS.gene54202:intron |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5.1:-6566971 | MS.gene54202:CDS |
| GCAATTGGGAAGAAAGAATG+GGG | 0.700840 | 5.1:-6567593 | MS.gene54202:CDS |
| TTGTATTGACCTGAATCATG+GGG | 0.724619 | 5.1:+6567560 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTATTTAAGAATAAACAAG+AGG | - | chr5.1:6567762-6567781 | MS.gene54202:intron | 20.0% |
| !! | TTTCAAAATCTGATTCATAT+GGG | - | chr5.1:6567858-6567877 | MS.gene54202:CDS | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | chr5.1:6567158-6567177 | None:intergenic | 20.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5.1:6567857-6567876 | MS.gene54202:CDS | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5.1:6567562-6567581 | MS.gene54202:CDS | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | + | chr5.1:6567078-6567097 | None:intergenic | 25.0% |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5.1:6567175-6567194 | MS.gene54202:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.1:6567704-6567723 | MS.gene54202:intron | 30.0% | |
| ATTAAGACCAAATTGTTTGC+AGG | - | chr5.1:6566899-6566918 | MS.gene54202:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.1:6567500-6567519 | MS.gene54202:CDS | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5.1:6567259-6567278 | MS.gene54202:CDS | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | chr5.1:6566909-6566928 | None:intergenic | 30.0% | |
| TGGACACATTAAAGCAATTA+AGG | - | chr5.1:6567895-6567914 | MS.gene54202:intron | 30.0% | |
| ! | AAAAGCATATTCCAAACAAG+TGG | - | chr5.1:6567395-6567414 | MS.gene54202:CDS | 30.0% |
| ! | ATTGTATTGACCTGAATCAT+GGG | + | chr5.1:6567249-6567268 | None:intergenic | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | + | chr5.1:6567396-6567415 | None:intergenic | 30.0% |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | chr5.1:6567279-6567298 | MS.gene54202:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | chr5.1:6567280-6567299 | MS.gene54202:CDS | 30.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5.1:6567422-6567441 | MS.gene54202:CDS | 35.0% | |
| AATAAACAAGAGGTTGCTTG+AGG | - | chr5.1:6567772-6567791 | MS.gene54202:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5.1:6567266-6567285 | MS.gene54202:CDS | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5.1:6567010-6567029 | MS.gene54202:CDS | 35.0% | |
| ATAAACAAGAGGTTGCTTGA+GGG | - | chr5.1:6567773-6567792 | MS.gene54202:intron | 35.0% | |
| ATAGTTTCACTCCACTTGTT+TGG | + | chr5.1:6567409-6567428 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.1:6567324-6567343 | MS.gene54202:CDS | 35.0% | |
| ATTGGTGAATCAAGTGAAGA+TGG | - | chr5.1:6567634-6567653 | MS.gene54202:intron | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5.1:6567432-6567451 | MS.gene54202:CDS | 35.0% | |
| TATGGGACTGATCTTTATGT+TGG | - | chr5.1:6567875-6567894 | MS.gene54202:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5.1:6567796-6567815 | MS.gene54202:CDS | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | chr5.1:6566912-6566931 | MS.gene54202:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5.1:6567278-6567297 | None:intergenic | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | chr5.1:6566911-6566930 | MS.gene54202:CDS | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5.1:6567571-6567590 | MS.gene54202:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.1:6567533-6567552 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5.1:6567019-6567038 | None:intergenic | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.1:6567435-6567454 | None:intergenic | 35.0% |
| ! | GATTGTATTGACCTGAATCA+TGG | + | chr5.1:6567250-6567269 | None:intergenic | 35.0% |
| ! | TTGTATTGACCTGAATCATG+GGG | + | chr5.1:6567248-6567267 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.1:6567821-6567840 | MS.gene54202:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5.1:6567291-6567310 | MS.gene54202:CDS | 35.0% |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5.1:6567284-6567303 | MS.gene54202:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5.1:6567385-6567404 | None:intergenic | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5.1:6567854-6567873 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.1:6567350-6567369 | MS.gene54202:CDS | 35.0% |
| AAGAAAGAATGGGGAACAAG+TGG | - | chr5.1:6567221-6567240 | MS.gene54202:CDS | 40.0% | |
| ACTTGATTCACCAATCCTTC+CGG | + | chr5.1:6567629-6567648 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.1:6566987-6567006 | MS.gene54202:CDS | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5.1:6567473-6567492 | MS.gene54202:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.1:6567002-6567021 | None:intergenic | 40.0% | |
| CCATTCTTTCTTCCCAATTG+CGG | + | chr5.1:6567213-6567232 | None:intergenic | 40.0% | |
| CGCAATTGGGAAGAAAGAAT+GGG | - | chr5.1:6567211-6567230 | MS.gene54202:CDS | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5.1:6567489-6567508 | MS.gene54202:CDS | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | chr5.1:6567212-6567231 | MS.gene54202:CDS | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5.1:6567536-6567555 | MS.gene54202:CDS | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | chr5.1:6567305-6567324 | MS.gene54202:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.1:6567340-6567359 | None:intergenic | 40.0% | |
| TAATTGTTCACCGGAAGGAT+TGG | - | chr5.1:6567616-6567635 | MS.gene54202:CDS | 40.0% | |
| TCCAAGTTCCTTCAGTTTCA+GGG | + | chr5.1:6566974-6566993 | None:intergenic | 40.0% | |
| TTCCAAGTTCCTTCAGTTTC+AGG | + | chr5.1:6566975-6566994 | None:intergenic | 40.0% | |
| TTGCCATGCTAATTGTTCAC+CGG | - | chr5.1:6567607-6567626 | MS.gene54202:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5.1:6567725-6567744 | MS.gene54202:intron | 40.0% |
| AAGATGGCAACCAAGATTGC+GGG | - | chr5.1:6567650-6567669 | MS.gene54202:intron | 45.0% | |
| ACCCTGAAACTGAAGGAACT+TGG | - | chr5.1:6566970-6566989 | MS.gene54202:CDS | 45.0% | |
| CAGGAAATTCAAGTGGGACT+TGG | - | chr5.1:6566918-6566937 | MS.gene54202:CDS | 45.0% | |
| CATGCTAATTGTTCACCGGA+AGG | - | chr5.1:6567611-6567630 | MS.gene54202:CDS | 45.0% | |
| CCATCTTACCCTGAAACTGA+AGG | - | chr5.1:6566963-6566982 | MS.gene54202:CDS | 45.0% | |
| CCGCAATTGGGAAGAAAGAA+TGG | - | chr5.1:6567210-6567229 | MS.gene54202:CDS | 45.0% | |
| CCTTCAGTTTCAGGGTAAGA+TGG | + | chr5.1:6566966-6566985 | None:intergenic | 45.0% | |
| CTTCCGGTGAACAATTAGCA+TGG | + | chr5.1:6567613-6567632 | None:intergenic | 45.0% | |
| GAAGATGGCAACCAAGATTG+CGG | - | chr5.1:6567649-6567668 | MS.gene54202:intron | 45.0% | |
| GAAGGAACTTGGAAGTTTCC+AGG | - | chr5.1:6566981-6567000 | MS.gene54202:CDS | 45.0% | |
| GGTGAACAATTAGCATGGCA+AGG | + | chr5.1:6567608-6567627 | None:intergenic | 45.0% | |
| GGTTGCTTGAGGGTGAAAAT+TGG | - | chr5.1:6567783-6567802 | MS.gene54202:intron | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.1:6567824-6567843 | MS.gene54202:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | - | chr5.1:6567786-6567805 | MS.gene54202:intron | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCTT+TGG | - | chr5.1:6567679-6567698 | MS.gene54202:intron | 45.0% |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5.1:6567834-6567853 | MS.gene54202:CDS | 45.0% |
| AAGCATCAGCTGCCGCAATT+GGG | - | chr5.1:6567198-6567217 | MS.gene54202:CDS | 50.0% | |
| AAGTTCACCACCCGCAATCT+TGG | + | chr5.1:6567663-6567682 | None:intergenic | 50.0% | |
| ACAAGTGGACCCCATGATTC+AGG | - | chr5.1:6567236-6567255 | MS.gene54202:CDS | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5.1:6566945-6566964 | None:intergenic | 50.0% | |
| ! | AAGTGGGACTTGGTCCATGT+GGG | - | chr5.1:6566928-6566947 | MS.gene54202:CDS | 50.0% |
| ATGGCAACCAAGATTGCGGG+TGG | - | chr5.1:6567653-6567672 | MS.gene54202:intron | 55.0% | |
| ATTGCGGGTGGTGAACTTGC+TGG | - | chr5.1:6567665-6567684 | MS.gene54202:intron | 55.0% | |
| ! | AGTGGGACTTGGTCCATGTG+GGG | - | chr5.1:6566929-6566948 | MS.gene54202:CDS | 55.0% |
| ! | CAAGTGGGACTTGGTCCATG+TGG | - | chr5.1:6566927-6566946 | MS.gene54202:CDS | 55.0% |
| ! | GAAGCATCAGCTGCCGCAAT+TGG | - | chr5.1:6567197-6567216 | MS.gene54202:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6566869 | 6567958 | 6566869 | ID=MS.gene54202 |
| chr5.1 | mRNA | 6566869 | 6567958 | 6566869 | ID=MS.gene54202.t1;Parent=MS.gene54202 |
| chr5.1 | exon | 6567941 | 6567958 | 6567941 | ID=MS.gene54202.t1.exon1;Parent=MS.gene54202.t1 |
| chr5.1 | CDS | 6567941 | 6567958 | 6567941 | ID=cds.MS.gene54202.t1;Parent=MS.gene54202.t1 |
| chr5.1 | exon | 6567796 | 6567906 | 6567796 | ID=MS.gene54202.t1.exon2;Parent=MS.gene54202.t1 |
| chr5.1 | CDS | 6567796 | 6567906 | 6567796 | ID=cds.MS.gene54202.t1;Parent=MS.gene54202.t1 |
| chr5.1 | exon | 6566869 | 6567648 | 6566869 | ID=MS.gene54202.t1.exon3;Parent=MS.gene54202.t1 |
| chr5.1 | CDS | 6566869 | 6567648 | 6566869 | ID=cds.MS.gene54202.t1;Parent=MS.gene54202.t1 |
| Gene Sequence |
| Protein sequence |
