AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54647

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54647.t1 MTR_6g007663 98.153 379 7 0 1 379 1 379 0.0 754
MS.gene54647.t1 MTR_2g436750 36.304 303 133 4 75 372 47 294 3.19e-56 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54647.t1 AT5G14790 53.906 384 125 8 1 379 1 337 1.08e-117 345
MS.gene54647.t1 AT3G01450 51.571 382 124 5 1 379 1 324 3.56e-112 331
MS.gene54647.t1 AT3G01450 51.571 382 124 5 1 379 1 324 3.56e-112 331
MS.gene54647.t1 AT4G15830 38.511 309 133 4 68 371 38 294 3.84e-61 199
MS.gene54647.t1 AT3G18530 45.126 277 142 5 1 276 1 268 3.92e-53 180
MS.gene54647.t1 AT3G18530 67.647 136 44 0 115 250 9 144 7.83e-50 169
MS.gene54647.t1 AT3G18530 66.400 125 42 0 126 250 1 125 5.49e-43 150

Find 80 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCTTATAATAGATTCTT+TGG 0.215909 6.1:+3206099 MS.gene54647:CDS
TCACTCTTCCTTTCAGTTGC+AGG 0.227531 6.1:-3205302 None:intergenic
TTAAGGTATGGTTGCACTTT+TGG 0.258199 6.1:-3206347 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.1:-3207281 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.1:-3207308 None:intergenic
CAGGAAGCTGGTCGCTCAAT+TGG 0.275487 6.1:-3207163 None:intergenic
TTGGTTTCCCCACATGTTAA+TGG 0.287937 6.1:+3205416 MS.gene54647:CDS
TCAGATACTGTCACGGTCTC+TGG 0.338960 6.1:-3207389 None:intergenic
AGTACAGCTTGAGCACTTAA+AGG 0.343680 6.1:-3207467 None:intergenic
TCAGATACTGTCACGGTCTC+TGG 0.360081 6.1:-3207362 None:intergenic
TTCTCGAAGTGTTCCACAAC+TGG 0.360569 6.1:+3206412 MS.gene54647:CDS
CCCACATGTTAATGGAAATC+AGG 0.366358 6.1:+3205424 MS.gene54647:CDS
AGCAGCTCGAACCCTACTTC+TGG 0.366714 6.1:+3207196 MS.gene54647:CDS
CAAGATTCTGTCGCGATCTC+TGG 0.369704 6.1:-3207416 None:intergenic
CAGAGATCGCGACAGAATCT+TGG 0.372783 6.1:+3207417 MS.gene54647:CDS
AATAGATTCTTTGGATCCTC+TGG 0.383460 6.1:+3206108 MS.gene54647:CDS
AGTGGCTGCTGGCACGAGAT+TGG 0.387556 6.1:-3207246 None:intergenic
GCTGATTCTGTTGTAGAGAT+TGG 0.388850 6.1:+3205455 MS.gene54647:CDS
TAGGGTTCGAGCTGCTTCTC+TGG 0.400244 6.1:-3207189 None:intergenic
GTGGCTGCTGGCACGAGATT+GGG 0.420543 6.1:-3207245 None:intergenic
TGTTAACAGACCCTCTTAGC+TGG 0.450176 6.1:+3205744 MS.gene54647:intron
ACAAGTAGTCATTGATATCA+AGG 0.452524 6.1:-3206303 None:intergenic
CTTGAGCACTTAAAGGAGAA+AGG 0.455045 6.1:-3207460 None:intergenic
AAGACCCTCCCGTGCAATGC+TGG 0.466560 6.1:-3207498 None:intergenic
AGGAAGCTGGTCGCTCAATT+GGG 0.467947 6.1:-3207162 None:intergenic
AGAGATCGCGACAGAATCTT+GGG 0.469637 6.1:+3207418 MS.gene54647:CDS
AGCATTGTCAACAGGAGGCT+TGG 0.476134 6.1:-3205348 None:intergenic
CTGGACTAGACTCAAAGGAT+TGG 0.485003 6.1:+3205763 MS.gene54647:CDS
GCAGAAGGCATAAATACATA+TGG 0.486424 6.1:+3207110 MS.gene54647:CDS
CTTCTCTGGACTCAGGAAGC+TGG 0.493252 6.1:-3207175 None:intergenic
TGCATCCTCTGATACTGTCT+CGG 0.499453 6.1:-3207315 None:intergenic
TGGACTAGACTCAAAGGATT+GGG 0.500742 6.1:+3205764 MS.gene54647:CDS
TGATGCCTTTGCACGAACAC+GGG 0.509631 6.1:-3206381 None:intergenic
AGACTCAAAGGATTGGGTCC+TGG 0.512503 6.1:+3205770 MS.gene54647:CDS
TTGTTTGGATAGGGTGCAGA+AGG 0.515020 6.1:+3207095 MS.gene54647:intron
TTGATGCCTTTGCACGAACA+CGG 0.516013 6.1:-3206382 None:intergenic
TTGAGTCTAGTCCAGCTAAG+AGG 0.519140 6.1:-3205755 None:intergenic
CCAAGGCCCTGAAAAGTCCT+AGG 0.528718 6.1:+3206020 MS.gene54647:CDS
GCTTCTTCTCAAGTCTTCAC+AGG 0.533896 6.1:+3206247 MS.gene54647:CDS
TGGATCCTCTGATACTGTCT+CGG 0.534414 6.1:-3207288 None:intergenic
GAAGAGTGAGGGCTCTGGTA+AGG 0.534884 6.1:+3205316 MS.gene54647:CDS
TCCTCAGATACAGTGGCTGC+TGG 0.535902 6.1:-3207257 None:intergenic
TGTGACCAGCATTGCACGGG+AGG 0.542793 6.1:+3207493 MS.gene54647:CDS
GGGTGCTTGTGCTTAAGGTA+TGG 0.543193 6.1:-3206359 None:intergenic
TTCGTGTGACCAGCATTGCA+CGG 0.548504 6.1:+3207489 MS.gene54647:CDS
TGAGTCTAGTCCAGCTAAGA+GGG 0.551003 6.1:-3205754 None:intergenic
ATAATATTCCTGCAACTGAA+AGG 0.555415 6.1:+3205294 MS.gene54647:CDS
GAAAGGAAGAGTGAGGGCTC+TGG 0.555889 6.1:+3205311 MS.gene54647:CDS
AAAGGTACTCATACCAGTTG+TGG 0.558875 6.1:-3206425 None:intergenic
GCCTGATTTCCATTAACATG+TGG 0.560884 6.1:-3205425 None:intergenic
CGAGCTGCTTCTCTGGACTC+AGG 0.564410 6.1:-3207182 None:intergenic
TCGTGTGACCAGCATTGCAC+GGG 0.575627 6.1:+3207490 MS.gene54647:CDS
ATCTCTACAACAGAATCAGC+AGG 0.577215 6.1:-3205452 None:intergenic
TCATTAGCATTGTCAACAGG+AGG 0.580927 6.1:-3205353 None:intergenic
CCTGATTTCCATTAACATGT+GGG 0.582748 6.1:-3205424 None:intergenic
GATGTCGGAGACAGCACTGA+AGG 0.584563 6.1:+3205265 None:intergenic
AATGTCAGCAGATGTCATAA+TGG 0.592994 6.1:-3206062 None:intergenic
GCCAGCAGCCACTGTATCTG+AGG 0.601163 6.1:+3207256 MS.gene54647:CDS
CTTAGCTGGACTAGACTCAA+AGG 0.601990 6.1:+3205758 MS.gene54647:CDS
GATGCCTTTGCACGAACACG+GGG 0.604224 6.1:-3206380 None:intergenic
TGGATCCTCTGATACTGTCA+CGG 0.608295 6.1:-3207342 None:intergenic
GTGACCAGCATTGCACGGGA+GGG 0.615180 6.1:+3207494 MS.gene54647:CDS
CTGATTTCCATTAACATGTG+GGG 0.618242 6.1:-3205423 None:intergenic
TGCAACTGAAAGGAAGAGTG+AGG 0.618257 6.1:+3205304 MS.gene54647:CDS
AACATGTGGGGAAACCAAAG+AGG 0.636905 6.1:-3205411 None:intergenic
TGTGATCACACGTATTGCCA+AGG 0.639205 6.1:+3206003 MS.gene54647:CDS
TACAACAGAATCAGCAGGCA+CGG 0.640260 6.1:-3205447 None:intergenic
GGACAAACGCTTTGTATGTG+AGG 0.643274 6.1:+3206268 MS.gene54647:CDS
GCAACTGAAAGGAAGAGTGA+GGG 0.647825 6.1:+3205305 MS.gene54647:CDS
TGGTTCCTCAGATACTGTCA+CGG 0.648009 6.1:-3207396 None:intergenic
TATTTAGAGTATCACAAACC+AGG 0.649406 6.1:-3205788 None:intergenic
CTTTGGATCCTCAGATACAG+TGG 0.658342 6.1:-3207264 None:intergenic
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.1:+3207283 MS.gene54647:CDS
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.1:+3207310 MS.gene54647:CDS
TGGATCCTCAGATACTGTCA+CGG 0.660853 6.1:-3207369 None:intergenic
AGAGACCGTGACAGTATCTG+AGG 0.663328 6.1:+3207364 MS.gene54647:CDS
AAATGTTGATGCTTGTGTCA+AGG 0.672297 6.1:+3205526 MS.gene54647:CDS
AGAGACCGTGACAGTATCTG+AGG 0.675746 6.1:+3207391 MS.gene54647:CDS
AAAGACCGTGACAGTATCAG+AGG 0.679340 6.1:+3207337 MS.gene54647:CDS
ATGCCTTTGCACGAACACGG+GGG 0.759816 6.1:-3206379 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACAAATTAATATTTTC+AGG - chr6.1:3206870-3206889 None:intergenic 10.0%
!!! GAAAATATTAATTTGTTTAT+TGG + chr6.1:3206870-3206889 MS.gene54647:intron 10.0%
!!! TAAACAAATTAATATTTTCA+GGG - chr6.1:3206869-3206888 None:intergenic 10.0%
!! AAAACAAACGTAAAAAATTA+TGG - chr6.1:3206632-3206651 None:intergenic 15.0%
!! TAAATTATTCATATGCTATA+TGG + chr6.1:3205967-3205986 MS.gene54647:intron 15.0%
!! TATATAAAGCTAATAATCAA+AGG - chr6.1:3205672-3205691 None:intergenic 15.0%
!!! ATAATTTTTTACGTTTGTTT+TGG + chr6.1:3206631-3206650 MS.gene54647:intron 15.0%
!!! ATTATTTTATCCATCTTTTT+TGG + chr6.1:3205550-3205569 MS.gene54647:intron 15.0%
!!! TTATTTTATCCATCTTTTTT+GGG + chr6.1:3205551-3205570 MS.gene54647:intron 15.0%
!! AGAAGCTTTCTTAAATAATT+TGG - chr6.1:3206692-3206711 None:intergenic 20.0%
!! GAAGCTTTCTTAAATAATTT+GGG - chr6.1:3206691-3206710 None:intergenic 20.0%
!! TAAACTGCTAGTATTAATAT+TGG + chr6.1:3206931-3206950 MS.gene54647:intron 20.0%
!! TGATCTTATAATAGATTCTT+TGG + chr6.1:3206099-3206118 MS.gene54647:CDS 20.0%
!! TTGCAAATTTAATAGTACAA+AGG - chr6.1:3206149-3206168 None:intergenic 20.0%
!!! CAATGATTTTAATTGATACA+TGG + chr6.1:3206837-3206856 MS.gene54647:intron 20.0%
!!! TTAACATCTTCTTTTTTGTT+TGG + chr6.1:3207080-3207099 MS.gene54647:intron 20.0%
! ACATAGCAAAATCAAATAGA+AGG + chr6.1:3206790-3206809 MS.gene54647:intron 25.0%
! CAAATTTAATAGTACAAAGG+AGG - chr6.1:3206146-3206165 None:intergenic 25.0%
! CCTTATGAAAAATAGAGAAA+CGG - chr6.1:3205821-3205840 None:intergenic 25.0%
! GTAAATTGACATGTTCTTAA+TGG + chr6.1:3206207-3206226 MS.gene54647:intron 25.0%
! GTCTATGTTAAATTTGTGAA+TGG + chr6.1:3206715-3206734 MS.gene54647:intron 25.0%
! TAACGATACTGACATAAAAT+AGG - chr6.1:3205709-3205728 None:intergenic 25.0%
!! AATATGCAATGGTTTTTGTT+TGG + chr6.1:3205931-3205950 MS.gene54647:intron 25.0%
!! AATGTTTTCTGATTGAAAGA+TGG + chr6.1:3205883-3205902 MS.gene54647:intron 25.0%
!!! AAGTTGATAACCATTGAAAT+TGG + chr6.1:3205597-3205616 MS.gene54647:intron 25.0%
!!! ATCTTCTTTTTTGTTTGGAT+AGG + chr6.1:3207085-3207104 MS.gene54647:intron 25.0%
!!! CTATTTGATTTTGCTATGTT+AGG - chr6.1:3206789-3206808 None:intergenic 25.0%
!!! TAATTGGCTTCCTAAAATTT+TGG - chr6.1:3206566-3206585 None:intergenic 25.0%
!!! TCTTCTTTTTTGTTTGGATA+GGG + chr6.1:3207086-3207105 MS.gene54647:intron 25.0%
!!! TGACATAAAATAGGTATTGA+AGG - chr6.1:3205700-3205719 None:intergenic 25.0%
AACCATTGCATATTAAGCAA+TGG - chr6.1:3205925-3205944 None:intergenic 30.0%
AAGAAGAGCAAAAGTCATAA+AGG - chr6.1:3206446-3206465 None:intergenic 30.0%
AATTGACATGTTCTTAATGG+TGG + chr6.1:3206210-3206229 MS.gene54647:intron 30.0%
ACAAGTAGTCATTGATATCA+AGG - chr6.1:3206306-3206325 None:intergenic 30.0%
ATAATATTCCTGCAACTGAA+AGG + chr6.1:3205294-3205313 MS.gene54647:CDS 30.0%
ATATGCTATATGGTAAACAG+GGG + chr6.1:3205977-3205996 MS.gene54647:intron 30.0%
ATCACAGAAAATCATTTCGT+GGG - chr6.1:3206522-3206541 None:intergenic 30.0%
CATATGCTATATGGTAAACA+GGG + chr6.1:3205976-3205995 MS.gene54647:intron 30.0%
GCTAGGAAGGTTAATAAATA+TGG + chr6.1:3207026-3207045 MS.gene54647:intron 30.0%
TACCATTGCTTAATATGCAA+TGG + chr6.1:3205920-3205939 MS.gene54647:intron 30.0%
TCATATGCTATATGGTAAAC+AGG + chr6.1:3205975-3205994 MS.gene54647:intron 30.0%
TGCTCTGCTAGTATTAATAT+TGG + chr6.1:3206983-3207002 MS.gene54647:intron 30.0%
TTATGGAATTTCATCATCAG+TGG - chr6.1:3206615-3206634 None:intergenic 30.0%
! TATTTAGAGTATCACAAACC+AGG - chr6.1:3205791-3205810 None:intergenic 30.0%
! TTTTCATTAGCATTGTCAAC+AGG - chr6.1:3205359-3205378 None:intergenic 30.0%
!! ATATCTGTTTTGTTCTACCA+TGG + chr6.1:3206958-3206977 MS.gene54647:intron 30.0%
!! CCGTTTCTCTATTTTTCATA+AGG + chr6.1:3205818-3205837 MS.gene54647:CDS 30.0%
AAATGTTGATGCTTGTGTCA+AGG + chr6.1:3205526-3205545 MS.gene54647:CDS 35.0%
AATAGATTCTTTGGATCCTC+TGG + chr6.1:3206108-3206127 MS.gene54647:CDS 35.0%
AATGTCAGCAGATGTCATAA+TGG - chr6.1:3206065-3206084 None:intergenic 35.0%
CATCACAGAAAATCATTTCG+TGG - chr6.1:3206523-3206542 None:intergenic 35.0%
CCTGATTTCCATTAACATGT+GGG - chr6.1:3205427-3205446 None:intergenic 35.0%
CTGATTTCCATTAACATGTG+GGG - chr6.1:3205426-3205445 None:intergenic 35.0%
GAAGAAAAACTGTTCCTCTT+TGG + chr6.1:3205397-3205416 MS.gene54647:CDS 35.0%
GAATTTAATGAAACACCCCA+AGG - chr6.1:3205635-3205654 None:intergenic 35.0%
GATAACCATTGAAATTGGTG+TGG + chr6.1:3205602-3205621 MS.gene54647:intron 35.0%
GTAATCTCAGAATACACTTG+TGG + chr6.1:3206182-3206201 MS.gene54647:intron 35.0%
TATATCTGTTCTGTTCAGCT+AGG + chr6.1:3207009-3207028 MS.gene54647:intron 35.0%
TATGCTATATGGTAAACAGG+GGG + chr6.1:3205978-3205997 MS.gene54647:intron 35.0%
TCTTTGCCTGCATCATTAAT+TGG - chr6.1:3206582-3206601 None:intergenic 35.0%
TTGAACCACACCAATTTCAA+TGG - chr6.1:3205610-3205629 None:intergenic 35.0%
! ACTTTTGGCAGCAATGAAAT+AGG - chr6.1:3206335-3206354 None:intergenic 35.0%
! AGCGACGAAACCAAAATTTT+AGG + chr6.1:3206553-3206572 MS.gene54647:intron 35.0%
! ATGACATCTGCTGACATTTT+CGG + chr6.1:3206067-3206086 MS.gene54647:CDS 35.0%
! CACGAAATGATTTTCTGTGA+TGG + chr6.1:3206521-3206540 MS.gene54647:intron 35.0%
! CTTTTGGCAGCAATGAAATA+GGG - chr6.1:3206334-3206353 None:intergenic 35.0%
! GCAGAAGGCATAAATACATA+TGG + chr6.1:3207110-3207129 MS.gene54647:CDS 35.0%
! TGTTTATTGGGAGCATGTAT+TGG + chr6.1:3206883-3206902 MS.gene54647:intron 35.0%
! TTAAGGTATGGTTGCACTTT+TGG - chr6.1:3206350-3206369 None:intergenic 35.0%
! TTTTGGCAGCAATGAAATAG+GGG - chr6.1:3206333-3206352 None:intergenic 35.0%
!!! ATCCATCTTTTTTGGGTAGA+GGG + chr6.1:3205558-3205577 MS.gene54647:intron 35.0%
!!! TATCCATCTTTTTTGGGTAG+AGG + chr6.1:3205557-3205576 MS.gene54647:intron 35.0%
AGGAAGCCAATTAATGATGC+AGG + chr6.1:3206573-3206592 MS.gene54647:intron 40.0%
AGTACAGCTTGAGCACTTAA+AGG - chr6.1:3207470-3207489 None:intergenic 40.0%
ATCTCTACAACAGAATCAGC+AGG - chr6.1:3205455-3205474 None:intergenic 40.0%
ATGCTATATGGTAAACAGGG+GGG + chr6.1:3205979-3205998 MS.gene54647:intron 40.0%
ATTGGTGTGGTTCAATACCT+TGG + chr6.1:3205615-3205634 MS.gene54647:intron 40.0%
CCCACATGTTAATGGAAATC+AGG + chr6.1:3205424-3205443 MS.gene54647:CDS 40.0%
CTTGAGCACTTAAAGGAGAA+AGG - chr6.1:3207463-3207482 None:intergenic 40.0%
GAGGAATTCTAACTTACCAG+AGG - chr6.1:3206127-3206146 None:intergenic 40.0%
GCCTGATTTCCATTAACATG+TGG - chr6.1:3205428-3205447 None:intergenic 40.0%
GGAGCATGTATTGGATTTCT+AGG + chr6.1:3206892-3206911 MS.gene54647:intron 40.0%
TCATTAGCATTGTCAACAGG+AGG - chr6.1:3205356-3205375 None:intergenic 40.0%
TTGGTGTGGTTCAATACCTT+GGG + chr6.1:3205616-3205635 MS.gene54647:intron 40.0%
TTGGTTTCCCCACATGTTAA+TGG + chr6.1:3205416-3205435 MS.gene54647:CDS 40.0%
! AATACTAGCAGAGCATTCCA+TGG - chr6.1:3206978-3206997 None:intergenic 40.0%
! GCTGATTCTGTTGTAGAGAT+TGG + chr6.1:3205455-3205474 MS.gene54647:CDS 40.0%
! TGGACTAGACTCAAAGGATT+GGG + chr6.1:3205764-3205783 MS.gene54647:CDS 40.0%
!! AAAGGTACTCATACCAGTTG+TGG - chr6.1:3206428-3206447 None:intergenic 40.0%
!! GTTTTGATAACAGCACTCCT+AGG - chr6.1:3206040-3206059 None:intergenic 40.0%
!!! GTTTTGAAGCTCCAGAAGTA+GGG - chr6.1:3207210-3207229 None:intergenic 40.0%
AAAGACCGAGACAGTATCAG+AGG + chr6.1:3207283-3207302 MS.gene54647:CDS 45.0%
AAAGACCGTGACAGTATCAG+AGG + chr6.1:3207337-3207356 MS.gene54647:CDS 45.0%
AACATGTGGGGAAACCAAAG+AGG - chr6.1:3205414-3205433 None:intergenic 45.0%
AGAGATCGCGACAGAATCTT+GGG + chr6.1:3207418-3207437 MS.gene54647:CDS 45.0%
ATGATGCAGGCAAAGAACCT+TGG + chr6.1:3206586-3206605 MS.gene54647:intron 45.0%
ATTCAGTCGCAAACATAGGC+TGG - chr6.1:3207052-3207071 None:intergenic 45.0%
CCACATTCAGTCGCAAACAT+AGG - chr6.1:3207056-3207075 None:intergenic 45.0%
CCTATGTTTGCGACTGAATG+TGG + chr6.1:3207053-3207072 MS.gene54647:intron 45.0%
CTTTGGATCCTCAGATACAG+TGG - chr6.1:3207267-3207286 None:intergenic 45.0%
GCAACTGAAAGGAAGAGTGA+GGG + chr6.1:3205305-3205324 MS.gene54647:CDS 45.0%
GCTTCTTCTCAAGTCTTCAC+AGG + chr6.1:3206247-3206266 MS.gene54647:CDS 45.0%
GGACAAACGCTTTGTATGTG+AGG + chr6.1:3206268-3206287 MS.gene54647:CDS 45.0%
GTCCCTCTACCCAAAAAAGA+TGG - chr6.1:3205563-3205582 None:intergenic 45.0%
TACAACAGAATCAGCAGGCA+CGG - chr6.1:3205450-3205469 None:intergenic 45.0%
TCACTCTTCCTTTCAGTTGC+AGG - chr6.1:3205305-3205324 None:intergenic 45.0%
TCTGATACTGTCTCGGTCTT+TGG - chr6.1:3207284-3207303 None:intergenic 45.0%
TCTGTTCTGTTCAGCTAGGA+AGG + chr6.1:3207013-3207032 MS.gene54647:intron 45.0%
TGAGTCTAGTCCAGCTAAGA+GGG - chr6.1:3205757-3205776 None:intergenic 45.0%
TGCAACTGAAAGGAAGAGTG+AGG + chr6.1:3205304-3205323 MS.gene54647:CDS 45.0%
TGCATCCTCTGATACTGTCT+CGG - chr6.1:3207318-3207337 None:intergenic 45.0%
TGGATCCTCAGATACTGTCA+CGG - chr6.1:3207372-3207391 None:intergenic 45.0%
TGGATCCTCTGATACTGTCA+CGG - chr6.1:3207345-3207364 None:intergenic 45.0%
TGGATCCTCTGATACTGTCT+CGG - chr6.1:3207291-3207310 None:intergenic 45.0%
TGGTGTGGTTCAATACCTTG+GGG + chr6.1:3205617-3205636 MS.gene54647:intron 45.0%
TGGTTCCTCAGATACTGTCA+CGG - chr6.1:3207399-3207418 None:intergenic 45.0%
TGTGATCACACGTATTGCCA+AGG + chr6.1:3206003-3206022 MS.gene54647:CDS 45.0%
TGTTAACAGACCCTCTTAGC+TGG + chr6.1:3205744-3205763 MS.gene54647:intron 45.0%
TTCATCATCAGTGGTGACCA+AGG - chr6.1:3206606-3206625 None:intergenic 45.0%
TTGAGTCTAGTCCAGCTAAG+AGG - chr6.1:3205758-3205777 None:intergenic 45.0%
TTGATGCCTTTGCACGAACA+CGG - chr6.1:3206385-3206404 None:intergenic 45.0%
TTGTTTGGATAGGGTGCAGA+AGG + chr6.1:3207095-3207114 MS.gene54647:intron 45.0%
TTTGGGTAGAGGGACTAGAT+GGG + chr6.1:3205568-3205587 MS.gene54647:intron 45.0%
! AGCACTCCTAGGACTTTTCA+GGG - chr6.1:3206029-3206048 None:intergenic 45.0%
! CTGGACTAGACTCAAAGGAT+TGG + chr6.1:3205763-3205782 MS.gene54647:CDS 45.0%
! CTTAGCTGGACTAGACTCAA+AGG + chr6.1:3205758-3205777 MS.gene54647:CDS 45.0%
! TTCTCGAAGTGTTCCACAAC+TGG + chr6.1:3206412-3206431 MS.gene54647:CDS 45.0%
!! TTTTGGGTAGAGGGACTAGA+TGG + chr6.1:3205567-3205586 MS.gene54647:intron 45.0%
!!! CGTTTTGAAGCTCCAGAAGT+AGG - chr6.1:3207211-3207230 None:intergenic 45.0%
!!! AAAATATTAATTTGTTTATT+GGG + chr6.1:3206871-3206890 MS.gene54647:intron 5.0%
AGACTCAAAGGATTGGGTCC+TGG + chr6.1:3205770-3205789 MS.gene54647:CDS 50.0%
AGAGACCGTGACAGTATCTG+AGG + chr6.1:3207364-3207383 MS.gene54647:CDS 50.0%
AGCATTGTCAACAGGAGGCT+TGG - chr6.1:3205351-3205370 None:intergenic 50.0%
AGGAAGCTGGTCGCTCAATT+GGG - chr6.1:3207165-3207184 None:intergenic 50.0%
CAAGATTCTGTCGCGATCTC+TGG - chr6.1:3207419-3207438 None:intergenic 50.0%
CAGAGATCGCGACAGAATCT+TGG + chr6.1:3207417-3207436 MS.gene54647:CDS 50.0%
GGGTGCTTGTGCTTAAGGTA+TGG - chr6.1:3206362-3206381 None:intergenic 50.0%
TCAGATACTGTCACGGTCTC+TGG - chr6.1:3207365-3207384 None:intergenic 50.0%
TGATGCCTTTGCACGAACAC+GGG - chr6.1:3206384-3206403 None:intergenic 50.0%
TTCGTGTGACCAGCATTGCA+CGG + chr6.1:3207489-3207508 MS.gene54647:CDS 50.0%
! CAGCACTCCTAGGACTTTTC+AGG - chr6.1:3206030-3206049 None:intergenic 50.0%
AGCAGCTCGAACCCTACTTC+TGG + chr6.1:3207196-3207215 MS.gene54647:CDS 55.0%
ATGCCTTTGCACGAACACGG+GGG - chr6.1:3206382-3206401 None:intergenic 55.0%
CAGGAAGCTGGTCGCTCAAT+TGG - chr6.1:3207166-3207185 None:intergenic 55.0%
CCAAGGCCCTGAAAAGTCCT+AGG + chr6.1:3206020-3206039 MS.gene54647:CDS 55.0%
CTTCTCTGGACTCAGGAAGC+TGG - chr6.1:3207178-3207197 None:intergenic 55.0%
GAAAGGAAGAGTGAGGGCTC+TGG + chr6.1:3205311-3205330 MS.gene54647:CDS 55.0%
GATGCCTTTGCACGAACACG+GGG - chr6.1:3206383-3206402 None:intergenic 55.0%
TAGGGTTCGAGCTGCTTCTC+TGG - chr6.1:3207192-3207211 None:intergenic 55.0%
TCCTCAGATACAGTGGCTGC+TGG - chr6.1:3207260-3207279 None:intergenic 55.0%
TCGTGTGACCAGCATTGCAC+GGG + chr6.1:3207490-3207509 MS.gene54647:CDS 55.0%
! GAAGAGTGAGGGCTCTGGTA+AGG + chr6.1:3205316-3205335 MS.gene54647:CDS 55.0%
!! CCTAGGACTTTTCAGGGCCT+TGG - chr6.1:3206023-3206042 None:intergenic 55.0%
AAGACCCTCCCGTGCAATGC+TGG - chr6.1:3207501-3207520 None:intergenic 60.0%
AGTGGCTGCTGGCACGAGAT+TGG - chr6.1:3207249-3207268 None:intergenic 60.0%
CGAGCTGCTTCTCTGGACTC+AGG - chr6.1:3207185-3207204 None:intergenic 60.0%
GCCAGCAGCCACTGTATCTG+AGG + chr6.1:3207256-3207275 MS.gene54647:CDS 60.0%
GTGACCAGCATTGCACGGGA+GGG + chr6.1:3207494-3207513 MS.gene54647:CDS 60.0%
GTGGCTGCTGGCACGAGATT+GGG - chr6.1:3207248-3207267 None:intergenic 60.0%
TGTGACCAGCATTGCACGGG+AGG + chr6.1:3207493-3207512 MS.gene54647:CDS 60.0%
!! CACGGGGGTGCTTGTGCTTA+AGG - chr6.1:3206367-3206386 None:intergenic 60.0%
GCACCCCCGTGTTCGTGCAA+AGG + chr6.1:3206376-3206395 MS.gene54647:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 3205266 3207529 3205266 ID=MS.gene54647
chr6.1 mRNA 3205266 3207529 3205266 ID=MS.gene54647.t1;Parent=MS.gene54647
chr6.1 exon 3205266 3205547 3205266 ID=MS.gene54647.t1.exon1;Parent=MS.gene54647.t1
chr6.1 CDS 3205266 3205547 3205266 ID=cds.MS.gene54647.t1;Parent=MS.gene54647.t1
chr6.1 exon 3205753 3205859 3205753 ID=MS.gene54647.t1.exon2;Parent=MS.gene54647.t1
chr6.1 CDS 3205753 3205859 3205753 ID=cds.MS.gene54647.t1;Parent=MS.gene54647.t1
chr6.1 exon 3205997 3206129 3205997 ID=MS.gene54647.t1.exon3;Parent=MS.gene54647.t1
chr6.1 CDS 3205997 3206129 3205997 ID=cds.MS.gene54647.t1;Parent=MS.gene54647.t1
chr6.1 exon 3206239 3206433 3206239 ID=MS.gene54647.t1.exon4;Parent=MS.gene54647.t1
chr6.1 CDS 3206239 3206433 3206239 ID=cds.MS.gene54647.t1;Parent=MS.gene54647.t1
chr6.1 exon 3207107 3207529 3207107 ID=MS.gene54647.t1.exon5;Parent=MS.gene54647.t1
chr6.1 CDS 3207107 3207529 3207107 ID=cds.MS.gene54647.t1;Parent=MS.gene54647.t1
Gene Sequence

>MS.gene54647

ATGTCGGAGACAGCACTGAAGGATCTCAATAATATTCCTGCAACTGAAAGGAAGAGTGAGGGCTCTGGTAAGGCGTGTTTGACCAAGCCTCCTGTTGACAATGCTAATGAAAATACTGAAGAAAGTCAAAAGAAGAAAAACTGTTCCTCTTTGGTTTCCCCACATGTTAATGGAAATCAGGCCGTGCCTGCTGATTCTGTTGTAGAGATTGGAACTGTAGAAGTAGAATACATTGATTCTGAGAACTTAAATGATCTAGAAAATGTTGATGCTTGTGTCAAGGTATTATTTTATCCATCTTTTTTGGGTAGAGGGACTAGATGGGTTTGAAAAGTTGATAACCATTGAAATTGGTGTGGTTCAATACCTTGGGGTGTTTCATTAAATTCTTTTTCGATATTTACCTTTGATTATTAGCTTTATATAATATTCCTTCAATACCTATTTTATGTCAGTATCGTTATTAGTTTTTTTTTTTTGTTAACAGACCCTCTTAGCTGGACTAGACTCAAAGGATTGGGTCCTGGTTTGTGATACTCTAAATAATGTACGCCGTTTCTCTATTTTTCATAAGGAAGCAATGCTTGATATTCTGTAAGTATTGAACTTTTTTCTTCAATGTTTTCTGATTGAAAGATGGTTTTTAAATTAAAATACCATTGCTTAATATGCAATGGTTTTTGTTTGGTTTTATAAGTTATTAAATTATTCATATGCTATATGGTAAACAGGGGGGATGTGATCACACGTATTGCCAAGGCCCTGAAAAGTCCTAGGAGTGCTGTTATCAAAACTGCCATTATGACATCTGCTGACATTTTCGGTGCATATAATGATCTTATAATAGATTCTTTGGATCCTCTGGTAAGTTAGAATTCCTCCTTTGTACTATTAAATTTGCAATCTTAAGCATTATGTAATCTCAGAATACACTTGTGGTAGTAAATTGACATGTTCTTAATGGTGGATGCAGCTACTACAGCTTCTTCTCAAGTCTTCACAGGACAAACGCTTTGTATGTGAGGCAGCAGAAAAAGCCTTGATATCAATGACTACTTGTATTTCCCCTATTTCATTGCTGCCAAAAGTGCAACCATACCTTAAGCACAAGCACCCCCGTGTTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACAACTGGTATGAGTACCTTTATGACTTTTGCTCTTCTTGATGACTCTTCATATTGATGTCTTTTAGTTTTAATTTATTTCTAGAGTTGTTTCCCACGAAATGATTTTCTGTGATGGAAAAAGAAAAGCGACGAAACCAAAATTTTAGGAAGCCAATTAATGATGCAGGCAAAGAACCTTGGTCACCACTGATGATGAAATTCCATAATTTTTTACGTTTGTTTTGGACATCTGACTGAATTTGAAAAAAGTTGTTTCAGACCCAAATTATTTAAGAAAGCTTCTCATGTCTATGTTAAATTTGTGAATGGTTTATCATGATCATGCATGTAATTCTGTTGTTGATAATTGATATATTGCCTAACATAGCAAAATCAAATAGAAGGACACTTAGTTGTGTGATCAAATAGCAATGATTTTAATTGATACATGGCATATGCCCTGAAAATATTAATTTGTTTATTGGGAGCATGTATTGGATTTCTAGGTTAATGATTATATGTTTAAACTGCTAGTATTAATATTGGTCTTATATCTGTTTTGTTCTACCATGGAATGCTCTGCTAGTATTAATATTGGTCTTATATCTGTTCTGTTCAGCTAGGAAGGTTAATAAATATGGCCAGCCTATGTTTGCGACTGAATGTGGATCATTAACATCTTCTTTTTTGTTTGGATAGGGTGCAGAAGGCATAAATACATATGGCATTGACAAATTGATTCAAGTAGCTGCATCCCAATTGAGCGACCAGCTTCCTGAGTCCAGAGAAGCAGCTCGAACCCTACTTCTGGAGCTTCAAAACGTGTACGAGAAATTTCCCAATCTCGTGCCAGCAGCCACTGTATCTGAGGATCCAAAGACCGAGACAGTATCAGAGGATCCAAAGACCGAGACAGTATCAGAGGATGCAAAGACCGTGACAGTATCAGAGGATCCAGAGACCGTGACAGTATCTGAGGATCCAGAGACCGTGACAGTATCTGAGGAACCAGAGATCGCGACAGAATCTTGGGAAAGCTTCTGTCAGTCAAACCTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTGACCAGCATTGCACGGGAGGGTCTTGTTTCATGA
Protein sequence

>MS.gene54647.t1

MSETALKDLNNIPATERKSEGSGKACLTKPPVDNANENTEESQKKKNCSSLVSPHVNGNQAVPADSVVEIGTVEVEYIDSENLNDLENVDACVKTLLAGLDSKDWVLVCDTLNNVRRFSIFHKEAMLDILGDVITRIAKALKSPRSAVIKTAIMTSADIFGAYNDLIIDSLDPLLLQLLLKSSQDKRFVCEAAEKALISMTTCISPISLLPKVQPYLKHKHPRVRAKASMCFSRSVPQLGAEGINTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKFPNLVPAATVSEDPKTETVSEDPKTETVSEDAKTVTVSEDPETVTVSEDPETVTVSEEPEIATESWESFCQSNLSPLSAQAVLRVTSIAREGLVS