Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54676.t1 | XP_013450864.1 | 98.5 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 2.00E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54676.t1 | Q9LYK6 | 83.1 | 314 | 53 | 0 | 4 | 317 | 2 | 315 | 1.1e-157 | 557.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54676.t1 | A0A072U5A3 | 98.5 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 1.4e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051568 | MS.gene54676 | -0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene052637 | MS.gene54676 | -0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene54676 | 0.841082 | 5.90E-58 | -1.69E-46 |
| MS.gene054468 | MS.gene54676 | -0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene054581 | MS.gene54676 | -0.809376 | 1.95E-50 | -1.69E-46 |
| MS.gene05491 | MS.gene54676 | 0.801671 | 8.07E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene54676 | -0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene055455 | MS.gene54676 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene54676 | 0.808331 | 3.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048383 | MS.gene54676 | PPI |
| MS.gene04593 | MS.gene54676 | PPI |
| MS.gene072377 | MS.gene54676 | PPI |
| MS.gene017957 | MS.gene54676 | PPI |
| MS.gene008950 | MS.gene54676 | PPI |
| MS.gene65922 | MS.gene54676 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54676.t1 | MTR_6g007797 | 98.529 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 0.0 | 703 |
| MS.gene54676.t1 | MTR_8g068320 | 49.363 | 314 | 150 | 5 | 7 | 316 | 14 | 322 | 4.61e-109 | 322 |
| MS.gene54676.t1 | MTR_8g068320 | 49.363 | 314 | 150 | 5 | 7 | 316 | 15 | 323 | 5.80e-109 | 321 |
| MS.gene54676.t1 | MTR_1g072140 | 21.942 | 278 | 205 | 5 | 32 | 306 | 33 | 301 | 1.70e-16 | 79.3 |
| MS.gene54676.t1 | MTR_4g119620 | 21.233 | 292 | 207 | 6 | 29 | 307 | 30 | 311 | 2.74e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54676.t1 | AT5G14530 | 83.121 | 314 | 53 | 0 | 4 | 317 | 2 | 315 | 0.0 | 555 |
| MS.gene54676.t1 | AT5G66240 | 49.518 | 311 | 152 | 3 | 7 | 316 | 14 | 320 | 4.84e-105 | 311 |
| MS.gene54676.t1 | AT5G66240 | 49.518 | 311 | 152 | 3 | 7 | 316 | 11 | 317 | 7.48e-105 | 310 |
| MS.gene54676.t1 | AT5G66240 | 49.196 | 311 | 151 | 4 | 7 | 316 | 11 | 315 | 6.52e-102 | 303 |
| MS.gene54676.t1 | AT4G02730 | 21.318 | 258 | 184 | 6 | 25 | 275 | 42 | 287 | 9.78e-14 | 71.6 |
| MS.gene54676.t1 | AT5G50230 | 25.091 | 275 | 184 | 10 | 31 | 297 | 230 | 490 | 1.19e-13 | 72.0 |
| MS.gene54676.t1 | AT3G49660 | 20.209 | 287 | 212 | 6 | 29 | 307 | 27 | 304 | 4.84e-12 | 66.2 |
Find 93 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACTGTTCTCACATTT+TGG | 0.113826 | 6.1:-3651153 | MS.gene54676:CDS |
| CCATCGTAAGGATGATTTAT+TGG | 0.221583 | 6.1:-3651968 | MS.gene54676:CDS |
| ATGCTCTTCAAGGTACAATT+TGG | 0.267475 | 6.1:-3651818 | MS.gene54676:CDS |
| TGGGTCGGTTCACTGGGGTT+GGG | 0.270302 | 6.1:+3651060 | None:intergenic |
| GGGTCGGTTCACTGGGGTTG+GGG | 0.328947 | 6.1:+3651061 | None:intergenic |
| GTGTGCCTTCATGCTTGAAA+TGG | 0.333505 | 6.1:-3651204 | MS.gene54676:CDS |
| TAAGCGCTGCGGATTTAGTT+TGG | 0.334470 | 6.1:-3651365 | MS.gene54676:CDS |
| TTGGGTCGGTTCACTGGGGT+TGG | 0.342028 | 6.1:+3651059 | None:intergenic |
| TTCAGATTCGGTTCGTTGTT+TGG | 0.346342 | 6.1:+3651127 | None:intergenic |
| GCCACTACATACTTCCCGTC+TGG | 0.359890 | 6.1:+3651304 | None:intergenic |
| ACCATGTTTCTTATGATAAG+TGG | 0.368405 | 6.1:+3651882 | None:intergenic |
| TCGACCACAGTGTAAGGTTA+TGG | 0.368885 | 6.1:-3651663 | MS.gene54676:CDS |
| TATTCTTCAGCTTTCAGATT+CGG | 0.379412 | 6.1:+3651115 | None:intergenic |
| AGCATGAAGGCACACCAATA+TGG | 0.401017 | 6.1:+3651212 | None:intergenic |
| GCATATTGGGTCGGTTCACT+GGG | 0.405903 | 6.1:+3651054 | None:intergenic |
| CGGCAAAGACAAGGCCTTGT+TGG | 0.412654 | 6.1:+3651575 | None:intergenic |
| ATATATGTTCTTGATGCATA+TGG | 0.423567 | 6.1:-3651394 | MS.gene54676:CDS |
| AATCTGAAAGCTGAAGAATA+TGG | 0.427295 | 6.1:-3651112 | MS.gene54676:CDS |
| CGACCACAGTGTAAGGTTAT+GGG | 0.429130 | 6.1:-3651662 | MS.gene54676:CDS |
| TGTGCCTTCATGCTTGAAAT+GGG | 0.431254 | 6.1:-3651203 | MS.gene54676:CDS |
| GCATGTTGGAGCAGCCATAT+TGG | 0.431934 | 6.1:-3651226 | MS.gene54676:CDS |
| GATATTAAATTCAGCAATGA+TGG | 0.432124 | 6.1:-3651451 | MS.gene54676:CDS |
| TTCGATTGATTTCCATCGTA+AGG | 0.442446 | 6.1:-3651980 | MS.gene54676:CDS |
| GTTCTGTCATATGCTCTTCA+AGG | 0.445567 | 6.1:-3651828 | MS.gene54676:CDS |
| TAGTGGCAGGCTCAGGAGGC+GGG | 0.458698 | 6.1:-3651288 | MS.gene54676:CDS |
| GAAGAGCATATGACAGAACT+TGG | 0.462044 | 6.1:+3651832 | None:intergenic |
| GTCTTTGCCGTAGCAATGGA+AGG | 0.466359 | 6.1:-3651562 | MS.gene54676:CDS |
| TTGGGGCTGAAGTCCTGCTT+CGG | 0.472052 | 6.1:+3651078 | None:intergenic |
| CGCGTACATGTAAGATTCCC+TGG | 0.474657 | 6.1:+3651620 | None:intergenic |
| CCGCTGCCTACGATACTTCA+AGG | 0.476986 | 6.1:-3651752 | MS.gene54676:CDS |
| GAGGCGGGACCATGCACGCT+TGG | 0.482153 | 6.1:-3651273 | MS.gene54676:CDS |
| TCTACGTGTAAATGCATGCC+AGG | 0.490219 | 6.1:-3651638 | MS.gene54676:CDS |
| ATCAATGATAGCTTCATGTC+TGG | 0.494202 | 6.1:-3651691 | MS.gene54676:CDS |
| GGCGGCACAGACGCCGAAGC+AGG | 0.497543 | 6.1:-3651091 | MS.gene54676:CDS |
| GTTCTATCGACCACAGTGTA+AGG | 0.499201 | 6.1:-3651669 | MS.gene54676:CDS |
| GACATGAAGCTATCATTGAT+AGG | 0.501421 | 6.1:+3651694 | None:intergenic |
| ATCTCATGGTACCTCAATAG+AGG | 0.509631 | 6.1:-3651338 | MS.gene54676:CDS |
| GACAAGGCCTTGTTGGTCAT+AGG | 0.519019 | 6.1:+3651582 | None:intergenic |
| CCACTACATACTTCCCGTCT+GGG | 0.519962 | 6.1:+3651305 | None:intergenic |
| GACGGGAAGTATGTAGTGGC+AGG | 0.522246 | 6.1:-3651301 | MS.gene54676:CDS |
| GATGATTTATTGGTCACAGC+TGG | 0.522307 | 6.1:-3651958 | MS.gene54676:CDS |
| AGTTGAGGCTGCAGCAAACA+TGG | 0.526145 | 6.1:+3651168 | None:intergenic |
| GTAGTGGCAGGCTCAGGAGG+CGG | 0.527933 | 6.1:-3651289 | MS.gene54676:CDS |
| AGGTACAATTTGGAGTCTAC+CGG | 0.528433 | 6.1:-3651808 | MS.gene54676:CDS |
| AAGTATGTAGTGGCAGGCTC+AGG | 0.532223 | 6.1:-3651295 | MS.gene54676:CDS |
| CCTTGTCTTTGCCGTAGCAA+TGG | 0.536478 | 6.1:-3651566 | MS.gene54676:CDS |
| GAGGATGACAGCATCACTTA+CGG | 0.538066 | 6.1:-3652073 | None:intergenic |
| AGGCTGCAGCAAACATGGCT+CGG | 0.538980 | 6.1:+3651173 | None:intergenic |
| TAAATACCTCAACGATTCTC+CGG | 0.546938 | 6.1:+3651789 | None:intergenic |
| TGCACGCTTGGAGTATTGAC+AGG | 0.554704 | 6.1:-3651261 | MS.gene54676:CDS |
| CGCTGCCTACGATACTTCAA+GGG | 0.558491 | 6.1:-3651751 | MS.gene54676:CDS |
| GAGGCTACATTTACCCCAGA+CGG | 0.561514 | 6.1:-3651319 | MS.gene54676:CDS |
| TTTAGTTTGGAACCATCTCA+TGG | 0.564025 | 6.1:-3651352 | MS.gene54676:CDS |
| ATTGTCCGCACCATGTCCAT+AGG | 0.567688 | 6.1:-3652036 | MS.gene54676:CDS |
| TCTTTGCCGTAGCAATGGAA+GGG | 0.575146 | 6.1:-3651561 | MS.gene54676:CDS |
| TATGTAGTGGCAGGCTCAGG+AGG | 0.576632 | 6.1:-3651292 | MS.gene54676:CDS |
| CTTTGCCGTAGCAATGGAAG+GGG | 0.578605 | 6.1:-3651560 | MS.gene54676:CDS |
| GTCAATACTCCAAGCGTGCA+TGG | 0.585442 | 6.1:+3651264 | None:intergenic |
| ACCGACAAGAAAAGTGTCGA+AGG | 0.593960 | 6.1:+3651495 | None:intergenic |
| GCAGCAAACATGGCTCGGCG+AGG | 0.601478 | 6.1:+3651178 | None:intergenic |
| CCAAAATGTGAGAACAGTTG+AGG | 0.608499 | 6.1:+3651153 | None:intergenic |
| ATATATCTTCCCAACATAGT+CGG | 0.608921 | 6.1:+3652002 | None:intergenic |
| GGTAAATGTAGCCTCTATTG+AGG | 0.612541 | 6.1:+3651327 | None:intergenic |
| GATTCACGTTCGTATGACAA+AGG | 0.613913 | 6.1:-3651520 | MS.gene54676:CDS |
| TATGCCCCTTGAAGTATCGT+AGG | 0.614852 | 6.1:+3651746 | None:intergenic |
| TCTATTGAGGTACCATGAGA+TGG | 0.615901 | 6.1:+3651340 | None:intergenic |
| CCAATAAATCATCCTTACGA+TGG | 0.616705 | 6.1:+3651968 | None:intergenic |
| TGTCGGTGGTGATACTGCTG+AGG | 0.617340 | 6.1:-3651479 | MS.gene54676:CDS |
| GGAGCCCATTTCAAGCATGA+AGG | 0.618503 | 6.1:+3651199 | None:intergenic |
| AGGCTACATTTACCCCAGAC+GGG | 0.619588 | 6.1:-3651318 | MS.gene54676:CDS |
| TGTTGGTCATAGGCAACAGT+AGG | 0.620319 | 6.1:+3651592 | None:intergenic |
| GGAATTACGAGGTAGCATGT+TGG | 0.622795 | 6.1:-3651240 | MS.gene54676:CDS |
| CCATTGCTACGGCAAAGACA+AGG | 0.633354 | 6.1:+3651566 | None:intergenic |
| CCTTGAAGTATCGTAGGCAG+CGG | 0.633936 | 6.1:+3651752 | None:intergenic |
| CGGCTCCTATGGACATGGTG+CGG | 0.635826 | 6.1:+3652031 | None:intergenic |
| CCCAGACGGGAAGTATGTAG+TGG | 0.649182 | 6.1:-3651305 | MS.gene54676:CDS |
| TATGTTCTTGATGCATATGG+AGG | 0.651997 | 6.1:-3651391 | MS.gene54676:CDS |
| AAGAGCATATGACAGAACTT+GGG | 0.654133 | 6.1:+3651833 | None:intergenic |
| ACCACTTATCATAAGAAACA+TGG | 0.669454 | 6.1:-3651883 | MS.gene54676:CDS |
| CTACGTGTAAATGCATGCCA+GGG | 0.671133 | 6.1:-3651637 | MS.gene54676:CDS |
| CCGACAAGAAAAGTGTCGAA+GGG | 0.674207 | 6.1:+3651496 | None:intergenic |
| CACTACATACTTCCCGTCTG+GGG | 0.675821 | 6.1:+3651306 | None:intergenic |
| CAGGGAATCTTACATGTACG+CGG | 0.690267 | 6.1:-3651619 | MS.gene54676:CDS |
| AGTCTACCGGAGAATCGTTG+AGG | 0.691573 | 6.1:-3651795 | MS.gene54676:CDS |
| GAGTATTGACAGGAATTACG+AGG | 0.691671 | 6.1:-3651251 | MS.gene54676:CDS |
| TTTGCCGTAGCAATGGAAGG+GGG | 0.702301 | 6.1:-3651559 | MS.gene54676:CDS |
| CTGAAAGCTGAAGAATATGG+CGG | 0.702890 | 6.1:-3651109 | MS.gene54676:CDS |
| CATATTGGGTCGGTTCACTG+GGG | 0.704543 | 6.1:+3651055 | None:intergenic |
| GCTGCCTACGATACTTCAAG+GGG | 0.709960 | 6.1:-3651750 | MS.gene54676:CDS |
| TTTATTGGTCACAGCTGGTG+AGG | 0.710015 | 6.1:-3651953 | MS.gene54676:CDS |
| ACTGTTGCCTATGACCAACA+AGG | 0.730445 | 6.1:-3651589 | MS.gene54676:CDS |
| TATGGAGGAGATAAGCGCTG+CGG | 0.743293 | 6.1:-3651376 | MS.gene54676:CDS |
| GATCCCATAACCTTACACTG+TGG | 0.791126 | 6.1:+3651659 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATATGTTCTTGATGCATA+TGG | - | chr6.1:3651744-3651763 | MS.gene54676:CDS | 25.0% |
| ! | GATATTAAATTCAGCAATGA+TGG | - | chr6.1:3651687-3651706 | MS.gene54676:CDS | 25.0% |
| AATCTGAAAGCTGAAGAATA+TGG | - | chr6.1:3652026-3652045 | MS.gene54676:CDS | 30.0% | |
| ACCACTTATCATAAGAAACA+TGG | - | chr6.1:3651255-3651274 | MS.gene54676:CDS | 30.0% | |
| ACCATGTTTCTTATGATAAG+TGG | + | chr6.1:3651259-3651278 | None:intergenic | 30.0% | |
| ATATATCTTCCCAACATAGT+CGG | + | chr6.1:3651139-3651158 | None:intergenic | 30.0% | |
| TATTCTTCAGCTTTCAGATT+CGG | + | chr6.1:3652026-3652045 | None:intergenic | 30.0% | |
| ATCAATGATAGCTTCATGTC+TGG | - | chr6.1:3651447-3651466 | MS.gene54676:CDS | 35.0% | |
| ATGCTCTTCAAGGTACAATT+TGG | - | chr6.1:3651320-3651339 | MS.gene54676:CDS | 35.0% | |
| CCAATAAATCATCCTTACGA+TGG | + | chr6.1:3651173-3651192 | None:intergenic | 35.0% | |
| CCATCGTAAGGATGATTTAT+TGG | - | chr6.1:3651170-3651189 | MS.gene54676:CDS | 35.0% | |
| GACATGAAGCTATCATTGAT+AGG | + | chr6.1:3651447-3651466 | None:intergenic | 35.0% | |
| TAAATACCTCAACGATTCTC+CGG | + | chr6.1:3651352-3651371 | None:intergenic | 35.0% | |
| TATGTTCTTGATGCATATGG+AGG | - | chr6.1:3651747-3651766 | MS.gene54676:CDS | 35.0% | |
| ! | AAGAGCATATGACAGAACTT+GGG | + | chr6.1:3651308-3651327 | None:intergenic | 35.0% |
| ! | TTCGATTGATTTCCATCGTA+AGG | - | chr6.1:3651158-3651177 | MS.gene54676:CDS | 35.0% |
| !! | TTTAGTTTGGAACCATCTCA+TGG | - | chr6.1:3651786-3651805 | MS.gene54676:CDS | 35.0% |
| ATCTCATGGTACCTCAATAG+AGG | - | chr6.1:3651800-3651819 | MS.gene54676:CDS | 40.0% | |
| CCAAAATGTGAGAACAGTTG+AGG | + | chr6.1:3651988-3652007 | None:intergenic | 40.0% | |
| CCCAACATAGTCGGAAAAAA+CGG | + | chr6.1:3651130-3651149 | None:intergenic | 40.0% | |
| CTGAAAGCTGAAGAATATGG+CGG | - | chr6.1:3652029-3652048 | MS.gene54676:CDS | 40.0% | |
| GATGATTTATTGGTCACAGC+TGG | - | chr6.1:3651180-3651199 | MS.gene54676:CDS | 40.0% | |
| GATTCACGTTCGTATGACAA+AGG | - | chr6.1:3651618-3651637 | MS.gene54676:CDS | 40.0% | |
| GGTAAATGTAGCCTCTATTG+AGG | + | chr6.1:3651814-3651833 | None:intergenic | 40.0% | |
| GTTCTGTCATATGCTCTTCA+AGG | - | chr6.1:3651310-3651329 | MS.gene54676:CDS | 40.0% | |
| TGTGCCTTCATGCTTGAAAT+GGG | - | chr6.1:3651935-3651954 | MS.gene54676:CDS | 40.0% | |
| ! | AGGTACAATTTGGAGTCTAC+CGG | - | chr6.1:3651330-3651349 | MS.gene54676:CDS | 40.0% |
| ! | CCTCAACTGTTCTCACATTT+TGG | - | chr6.1:3651985-3652004 | MS.gene54676:CDS | 40.0% |
| ! | GAAGAGCATATGACAGAACT+TGG | + | chr6.1:3651309-3651328 | None:intergenic | 40.0% |
| ! | TCTATTGAGGTACCATGAGA+TGG | + | chr6.1:3651801-3651820 | None:intergenic | 40.0% |
| ! | TTCAGATTCGGTTCGTTGTT+TGG | + | chr6.1:3652014-3652033 | None:intergenic | 40.0% |
| !! | GAGTATTGACAGGAATTACG+AGG | - | chr6.1:3651887-3651906 | MS.gene54676:CDS | 40.0% |
| !!! | CCGTTTTTTCCGACTATGTT+GGG | - | chr6.1:3651127-3651146 | MS.gene54676:CDS | 40.0% |
| AAAAACGGCTCCTATGGACA+TGG | + | chr6.1:3651115-3651134 | None:intergenic | 45.0% | |
| ACTGTTGCCTATGACCAACA+AGG | - | chr6.1:3651549-3651568 | MS.gene54676:CDS | 45.0% | |
| CAGGGAATCTTACATGTACG+CGG | - | chr6.1:3651519-3651538 | MS.gene54676:CDS | 45.0% | |
| CGACCACAGTGTAAGGTTAT+GGG | - | chr6.1:3651476-3651495 | MS.gene54676:CDS | 45.0% | |
| CTACGTGTAAATGCATGCCA+GGG | - | chr6.1:3651501-3651520 | MS.gene54676:CDS | 45.0% | |
| GATCCCATAACCTTACACTG+TGG | + | chr6.1:3651482-3651501 | None:intergenic | 45.0% | |
| GGAATTACGAGGTAGCATGT+TGG | - | chr6.1:3651898-3651917 | MS.gene54676:CDS | 45.0% | |
| GTGTGCCTTCATGCTTGAAA+TGG | - | chr6.1:3651934-3651953 | MS.gene54676:CDS | 45.0% | |
| GTTCTATCGACCACAGTGTA+AGG | - | chr6.1:3651469-3651488 | MS.gene54676:CDS | 45.0% | |
| TCGACCACAGTGTAAGGTTA+TGG | - | chr6.1:3651475-3651494 | MS.gene54676:CDS | 45.0% | |
| TCTACGTGTAAATGCATGCC+AGG | - | chr6.1:3651500-3651519 | MS.gene54676:CDS | 45.0% | |
| TCTTTGCCGTAGCAATGGAA+GGG | - | chr6.1:3651577-3651596 | MS.gene54676:CDS | 45.0% | |
| TGTTGGTCATAGGCAACAGT+AGG | + | chr6.1:3651549-3651568 | None:intergenic | 45.0% | |
| TTTATTGGTCACAGCTGGTG+AGG | - | chr6.1:3651185-3651204 | MS.gene54676:CDS | 45.0% | |
| ! | AGCATGAAGGCACACCAATA+TGG | + | chr6.1:3651929-3651948 | None:intergenic | 45.0% |
| ! | CCCTTCGACACTTTTCTTGT+CGG | - | chr6.1:3651642-3651661 | MS.gene54676:CDS | 45.0% |
| ! | TAAGCGCTGCGGATTTAGTT+TGG | - | chr6.1:3651773-3651792 | MS.gene54676:CDS | 45.0% |
| ! | TTCGACACTTTTCTTGTCGG+TGG | - | chr6.1:3651645-3651664 | MS.gene54676:CDS | 45.0% |
| !! | ACCGACAAGAAAAGTGTCGA+AGG | + | chr6.1:3651646-3651665 | None:intergenic | 45.0% |
| !! | CCGACAAGAAAAGTGTCGAA+GGG | + | chr6.1:3651645-3651664 | None:intergenic | 45.0% |
| !! | TATGCCCCTTGAAGTATCGT+AGG | + | chr6.1:3651395-3651414 | None:intergenic | 45.0% |
| !!! | GCCGTTTTTTCCGACTATGT+TGG | - | chr6.1:3651126-3651145 | MS.gene54676:CDS | 45.0% |
| AAGTATGTAGTGGCAGGCTC+AGG | - | chr6.1:3651843-3651862 | MS.gene54676:CDS | 50.0% | |
| AGGCTACATTTACCCCAGAC+GGG | - | chr6.1:3651820-3651839 | MS.gene54676:CDS | 50.0% | |
| AGTCTACCGGAGAATCGTTG+AGG | - | chr6.1:3651343-3651362 | MS.gene54676:CDS | 50.0% | |
| AGTTGAGGCTGCAGCAAACA+TGG | + | chr6.1:3651973-3651992 | None:intergenic | 50.0% | |
| ATTGTCCGCACCATGTCCAT+AGG | - | chr6.1:3651102-3651121 | MS.gene54676:CDS | 50.0% | |
| CACTACATACTTCCCGTCTG+GGG | + | chr6.1:3651835-3651854 | None:intergenic | 50.0% | |
| CCACTACATACTTCCCGTCT+GGG | + | chr6.1:3651836-3651855 | None:intergenic | 50.0% | |
| CCATTGCTACGGCAAAGACA+AGG | + | chr6.1:3651575-3651594 | None:intergenic | 50.0% | |
| CCTTGTCTTTGCCGTAGCAA+TGG | - | chr6.1:3651572-3651591 | MS.gene54676:CDS | 50.0% | |
| CGCGTACATGTAAGATTCCC+TGG | + | chr6.1:3651521-3651540 | None:intergenic | 50.0% | |
| CGCTGCCTACGATACTTCAA+GGG | - | chr6.1:3651387-3651406 | MS.gene54676:CDS | 50.0% | |
| CTTTGCCGTAGCAATGGAAG+GGG | - | chr6.1:3651578-3651597 | MS.gene54676:CDS | 50.0% | |
| GAGGCTACATTTACCCCAGA+CGG | - | chr6.1:3651819-3651838 | MS.gene54676:CDS | 50.0% | |
| GCATGTTGGAGCAGCCATAT+TGG | - | chr6.1:3651912-3651931 | MS.gene54676:CDS | 50.0% | |
| GCTGCCTACGATACTTCAAG+GGG | - | chr6.1:3651388-3651407 | MS.gene54676:CDS | 50.0% | |
| GGAGCCCATTTCAAGCATGA+AGG | + | chr6.1:3651942-3651961 | None:intergenic | 50.0% | |
| GTCAATACTCCAAGCGTGCA+TGG | + | chr6.1:3651877-3651896 | None:intergenic | 50.0% | |
| GTCGGAAAAAACGGCTCCTA+TGG | + | chr6.1:3651121-3651140 | None:intergenic | 50.0% | |
| GTCTTTGCCGTAGCAATGGA+AGG | - | chr6.1:3651576-3651595 | MS.gene54676:CDS | 50.0% | |
| TTTGCCGTAGCAATGGAAGG+GGG | - | chr6.1:3651579-3651598 | MS.gene54676:CDS | 50.0% | |
| ! | TATGGAGGAGATAAGCGCTG+CGG | - | chr6.1:3651762-3651781 | MS.gene54676:CDS | 50.0% |
| !! | CCTTGAAGTATCGTAGGCAG+CGG | + | chr6.1:3651389-3651408 | None:intergenic | 50.0% |
| !! | GACAAGGCCTTGTTGGTCAT+AGG | + | chr6.1:3651559-3651578 | None:intergenic | 50.0% |
| !! | TGCACGCTTGGAGTATTGAC+AGG | - | chr6.1:3651877-3651896 | MS.gene54676:CDS | 50.0% |
| AGCTCCCCCTTCCATTGCTA+CGG | + | chr6.1:3651586-3651605 | None:intergenic | 55.0% | |
| AGGCTGCAGCAAACATGGCT+CGG | + | chr6.1:3651968-3651987 | None:intergenic | 55.0% | |
| CCGCTGCCTACGATACTTCA+AGG | - | chr6.1:3651386-3651405 | MS.gene54676:CDS | 55.0% | |
| GCCACTACATACTTCCCGTC+TGG | + | chr6.1:3651837-3651856 | None:intergenic | 55.0% | |
| TATGTAGTGGCAGGCTCAGG+AGG | - | chr6.1:3651846-3651865 | MS.gene54676:CDS | 55.0% | |
| TGTCGGTGGTGATACTGCTG+AGG | - | chr6.1:3651659-3651678 | MS.gene54676:CDS | 55.0% | |
| TTGGGGCTGAAGTCCTGCTT+CGG | + | chr6.1:3652063-3652082 | None:intergenic | 55.0% | |
| ! | CCCAGACGGGAAGTATGTAG+TGG | - | chr6.1:3651833-3651852 | MS.gene54676:CDS | 55.0% |
| ! | CGGCAAAGACAAGGCCTTGT+TGG | + | chr6.1:3651566-3651585 | None:intergenic | 55.0% |
| ! | GACGGGAAGTATGTAGTGGC+AGG | - | chr6.1:3651837-3651856 | MS.gene54676:CDS | 55.0% |
| CGGCTCCTATGGACATGGTG+CGG | + | chr6.1:3651110-3651129 | None:intergenic | 60.0% | |
| GTAGTGGCAGGCTCAGGAGG+CGG | - | chr6.1:3651849-3651868 | MS.gene54676:CDS | 65.0% | |
| TAGTGGCAGGCTCAGGAGGC+GGG | - | chr6.1:3651850-3651869 | MS.gene54676:CDS | 65.0% | |
| ! | GCAGCAAACATGGCTCGGCG+AGG | + | chr6.1:3651963-3651982 | None:intergenic | 65.0% |
| GAGGCGGGACCATGCACGCT+TGG | - | chr6.1:3651865-3651884 | MS.gene54676:CDS | 70.0% | |
| GGCGGCACAGACGCCGAAGC+AGG | - | chr6.1:3652047-3652066 | MS.gene54676:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3651069 | 3652091 | 3651069 | ID=MS.gene54676 |
| chr6.1 | mRNA | 3651069 | 3652091 | 3651069 | ID=MS.gene54676.t1;Parent=MS.gene54676 |
| chr6.1 | exon | 3651069 | 3652091 | 3651069 | ID=MS.gene54676.t1.exon1;Parent=MS.gene54676.t1 |
| chr6.1 | CDS | 3651069 | 3652091 | 3651069 | ID=cds.MS.gene54676.t1;Parent=MS.gene54676.t1 |
| Gene Sequence |
| Protein sequence |
