AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54701

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54701.t1 MTR_6g007897 93.033 244 3 1 1 230 5 248 1.04e-147 411
MS.gene54701.t1 MTR_6g007917 41.739 230 62 5 1 230 1 158 1.31e-45 149
MS.gene54701.t1 MTR_0254s0070 51.773 141 52 4 95 230 35 164 1.66e-39 134
MS.gene54701.t1 MTR_6g007913 60.577 104 36 2 132 230 35 138 1.71e-35 123
MS.gene54701.t1 MTR_8g062800 68.750 64 20 0 167 230 49 112 3.51e-27 100
MS.gene54701.t1 MTR_4g106860 72.131 61 17 0 170 230 55 115 5.95e-24 92.8
MS.gene54701.t1 MTR_1g096370 46.914 81 42 1 150 230 16 95 8.92e-18 75.9
MS.gene54701.t1 MTR_3g113890 57.377 61 25 1 170 230 44 103 1.87e-15 70.1
MS.gene54701.t1 MTR_1g025220 59.016 61 24 1 170 230 42 101 5.23e-15 68.9
MS.gene54701.t1 MTR_1g025250 57.377 61 25 1 170 230 41 100 3.72e-13 63.9
MS.gene54701.t1 MTR_1g106915 47.541 61 31 1 170 230 31 90 3.07e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54701.t1 AT5G14920 66.154 65 22 0 166 230 211 275 3.17e-28 108
MS.gene54701.t1 AT1G75750 57.377 61 25 1 170 230 39 98 1.78e-14 67.4
MS.gene54701.t1 AT1G75750 57.377 61 25 1 170 230 38 97 2.34e-14 67.0
MS.gene54701.t1 AT2G18420 57.377 61 25 1 170 230 35 94 2.36e-13 64.3
MS.gene54701.t1 AT2G18420 57.377 61 25 1 170 230 11 70 3.18e-13 63.2
MS.gene54701.t1 AT1G22690 52.459 61 28 1 170 230 60 119 3.63e-13 64.3
MS.gene54701.t1 AT1G22690 52.459 61 28 1 170 230 60 119 3.63e-13 64.3
MS.gene54701.t1 AT1G22690 52.459 61 28 1 170 230 60 119 3.63e-13 64.3
MS.gene54701.t1 AT4G09600 55.738 61 26 1 170 230 40 99 8.80e-13 62.8
MS.gene54701.t1 AT2G14900 37.209 86 49 3 147 230 26 108 6.18e-11 58.2

Find 72 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCCATGATTTGACTAT+TGG 0.215760 6.1:-3953310 None:intergenic
GCATTCCACTATGTGGTTAT+AGG 0.264033 6.1:+3953759 MS.gene54701:CDS
ATCACCTCCTTCTCCTCCTT+TGG 0.313521 6.1:+3953156 MS.gene54701:CDS
TCTCTGTTACCATAAGTTCC+TGG 0.385043 6.1:-3953857 None:intergenic
ACAATAGGTGGTGATTGATA+TGG 0.386150 6.1:-3953085 None:intergenic
TGTGTCCCTCCAGGAACTTA+TGG 0.404918 6.1:+3953848 MS.gene54701:CDS
GGTGTTGGTGGTGCCTTCAC+TGG 0.418572 6.1:-3952965 None:intergenic
ACTATTGGTGGTGATTGATA+AGG 0.424720 6.1:-3953253 None:intergenic
GTTGGTGGTGCCTTCACTAT+AGG 0.433989 6.1:-3953205 None:intergenic
TGGCAAGTGTTACACTGATA+TGG 0.441521 6.1:+3953886 MS.gene54701:CDS
TAAGGTGGTGATTTAACTAA+AGG 0.446310 6.1:-3952989 None:intergenic
GAAGGAGGTGATTTCACAAT+AGG 0.447190 6.1:-3953040 None:intergenic
GAAGGAGGTGATTTCACAAT+AGG 0.449629 6.1:-3953145 None:intergenic
GGAGAAGGTGGTGTTACTAT+AGG 0.467704 6.1:-3952944 None:intergenic
GGTGGTGGAGATGGAGCAAC+AGG 0.470027 6.1:-3953283 None:intergenic
ACTATAGGTGGAGGAGTTGG+TGG 0.476412 6.1:-3953220 None:intergenic
TTCACTATAGGTGGAGGAGT+TGG 0.477408 6.1:-3953223 None:intergenic
GGAGAAGGTGCCTTTACAAT+AGG 0.477945 6.1:-3953100 None:intergenic
CTACTCCAATAGTCAAATCA+TGG 0.478634 6.1:+3953305 MS.gene54701:CDS
ATCACCTCCTTCACCACCAT+TGG 0.482927 6.1:+3953051 MS.gene54701:CDS
ATAGGTGGTGTTGGTTTCAC+TGG 0.498511 6.1:-3953022 None:intergenic
ACTATAGGTGGTGATTGATA+AGG 0.503850 6.1:-3953190 None:intergenic
GATTTCACAATAGGTGGTGT+TGG 0.507384 6.1:-3953031 None:intergenic
GATTTCACAATAGGTGGTGT+TGG 0.507384 6.1:-3953136 None:intergenic
TTCACTGGTGGTGATTGATA+AGG 0.508150 6.1:-3953007 None:intergenic
TGATGAAGATCTCAAGATAG+TGG 0.509151 6.1:+3952118 MS.gene54701:CDS
CGGTGCAAATGTGTCCCTCC+AGG 0.510158 6.1:+3953839 MS.gene54701:CDS
ATAGGACTTGGTGGAGCTGT+AGG 0.510347 6.1:-3952926 None:intergenic
TAATGTATCTATGGACACTT+AGG 0.518660 6.1:-3953926 None:intergenic
CATGATTTGACTATTGGAGT+AGG 0.520632 6.1:-3953304 None:intergenic
GATTTAACTAAAGGTGGTGT+TGG 0.520898 6.1:-3952980 None:intergenic
TTGACTATTGGAGTAGGTGG+TGG 0.529784 6.1:-3953298 None:intergenic
GAGTAAAGATTATACCTTCG+TGG 0.536465 6.1:-3951896 None:intergenic
TCCAATAGTCAAATCATGGA+AGG 0.539250 6.1:+3953309 MS.gene54701:CDS
ATTGGAGTAGGTGGTGGAGA+TGG 0.542148 6.1:-3953292 None:intergenic
TCAATCACCACCTATTGTAA+AGG 0.543871 6.1:+3953090 MS.gene54701:CDS
TAGGACTTGGTGGAGCTGTA+GGG 0.552061 6.1:-3952925 None:intergenic
TTAACTAAAGGTGGTGTTGG+TGG 0.560001 6.1:-3952977 None:intergenic
GGTGGTGCCTTCACTGGAGA+AGG 0.561894 6.1:-3952959 None:intergenic
GGTGTTACTATAGGACTTGG+TGG 0.562271 6.1:-3952935 None:intergenic
GGTGGTGATTTAACTAAAGG+TGG 0.563616 6.1:-3952986 None:intergenic
TGGCACCTATAACCACATAG+TGG 0.564127 6.1:-3953764 None:intergenic
GGTGGTGTTACTATAGGACT+TGG 0.566564 6.1:-3952938 None:intergenic
GAAGGTGCCTTTACAATAGG+TGG 0.569135 6.1:-3953097 None:intergenic
GGTGGTGTTGGTTTCACTAG+AGG 0.574102 6.1:-3953124 None:intergenic
CTGGAGGGACACATTTGCAC+CGG 0.583431 6.1:-3953838 None:intergenic
CCAATAGTCAAATCATGGAA+GGG 0.585464 6.1:+3953310 MS.gene54701:CDS
GGTTTCACTAGAGGAGGAGA+AGG 0.586785 6.1:-3953115 None:intergenic
TTCACCAAAGGAGGAGAAGG+AGG 0.588422 6.1:-3953160 None:intergenic
AACACCACCTTCTCCAGTGA+AGG 0.591450 6.1:+3952952 MS.gene54701:CDS
GCAGATTGCATTCCACTATG+TGG 0.591494 6.1:+3953752 MS.gene54701:intron
GGTGTTGGTTTCACTAGAGG+AGG 0.593802 6.1:-3953121 None:intergenic
GATTTCACCAATGGTGGTGA+AGG 0.594431 6.1:-3953058 None:intergenic
GGTGGTGTTGGTTTCACTGG+TGG 0.594612 6.1:-3953019 None:intergenic
GGAGGTGATTTCACAATAGG+TGG 0.599121 6.1:-3953037 None:intergenic
GGAGGTGATTTCACAATAGG+TGG 0.599121 6.1:-3953142 None:intergenic
TATGGTGGTGATTTCACCAA+TGG 0.601372 6.1:-3953067 None:intergenic
GGTGCCTTCACTGGAGAAGG+TGG 0.604169 6.1:-3952956 None:intergenic
ATTGGTGGTGATTGATAAGG+AGG 0.614855 6.1:-3953250 None:intergenic
TCAATCACCACCTATAGTGA+AGG 0.619479 6.1:+3953195 MS.gene54701:CDS
ATAGGTGGTGATTGATATGG+TGG 0.620609 6.1:-3953082 None:intergenic
ACTGGTGGTGATTGATAAGG+TGG 0.624494 6.1:-3953004 None:intergenic
CATGCATGACTTGTTGTGAC+CGG 0.628034 6.1:+3953819 MS.gene54701:CDS
TACACTGATATGGTGACTCA+TGG 0.628922 6.1:+3953896 MS.gene54701:CDS
TTCACCAATGGTGGTGAAGG+AGG 0.636204 6.1:-3953055 None:intergenic
GGTGGTGCCTTCACTATAGG+TGG 0.638916 6.1:-3953202 None:intergenic
CTGTTACCATAAGTTCCTGG+AGG 0.651625 6.1:-3953854 None:intergenic
GATTTGACTATTGGAGTAGG+TGG 0.657281 6.1:-3953301 None:intergenic
GGTGGAGATGGAGCAACAGG+TGG 0.659007 6.1:-3953280 None:intergenic
ATAGGTGGTGATTGATAAGG+TGG 0.660552 6.1:-3953187 None:intergenic
GGTGGTGATTTCACCAATGG+TGG 0.693978 6.1:-3953064 None:intergenic
TGTTACCATAAGTTCCTGGA+GGG 0.694188 6.1:-3953853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATTAGAAGTA+TGG - chr6.1:3952540-3952559 None:intergenic 10.0%
!!! TATTTATACTAAAATTTTAG+AGG - chr6.1:3953443-3953462 None:intergenic 10.0%
!! AAAATTAGTAATGTGATATT+TGG + chr6.1:3952883-3952902 MS.gene54701:intron 15.0%
!! ATAAATTCACATATATATTG+TGG + chr6.1:3953638-3953657 MS.gene54701:intron 15.0%
!! CAAAAATATGATTATATGTT+TGG + chr6.1:3953471-3953490 MS.gene54701:intron 15.0%
!! TAAATCAAGAAGAAAAAAAT+TGG - chr6.1:3952027-3952046 None:intergenic 15.0%
!! AAAAATGCTTAGAAGAAAAA+TGG - chr6.1:3951866-3951885 None:intergenic 20.0%
!! AACATATTTATCTACTTAGA+AGG + chr6.1:3951943-3951962 MS.gene54701:intron 20.0%
!! GAATCAAACAAAAATAGAAA+GGG - chr6.1:3952171-3952190 None:intergenic 20.0%
!! GAGTAGTGATTAATTAATAT+TGG + chr6.1:3953675-3953694 MS.gene54701:intron 20.0%
!! TATAATATATCTTTATGTGC+AGG + chr6.1:3952085-3952104 MS.gene54701:intron 20.0%
!! TTGACAAAATTATCGTAATA+TGG - chr6.1:3952655-3952674 None:intergenic 20.0%
!!! AAAAATGAGCAAAAAAGTTT+TGG - chr6.1:3953498-3953517 None:intergenic 20.0%
!!! AAAATGAGCAAAAAAGTTTT+GGG - chr6.1:3953497-3953516 None:intergenic 20.0%
!!! AAACCTGTATTTTTATTTTG+TGG + chr6.1:3953729-3953748 MS.gene54701:intron 20.0%
!!! AAACTTTTTTGCTCATTTTT+TGG + chr6.1:3953498-3953517 MS.gene54701:intron 20.0%
!!! AACCTGTATTTTTATTTTGT+GGG + chr6.1:3953730-3953749 MS.gene54701:intron 20.0%
!!! ATAAAAATTAGAAGTATGGT+AGG - chr6.1:3952536-3952555 None:intergenic 20.0%
!!! GTTGATCTGTTTTTTAATAA+AGG - chr6.1:3952345-3952364 None:intergenic 20.0%
!!! TTGTATAGTAGTTAATGTTT+TGG - chr6.1:3952710-3952729 None:intergenic 20.0%
! ACATATTAAAGACAGAGAAA+TGG - chr6.1:3953347-3953366 None:intergenic 25.0%
! AGTTAGAGAAAAGAGAAATT+AGG + chr6.1:3952399-3952418 MS.gene54701:intron 25.0%
! ATATTTATCTACTTAGAAGG+TGG + chr6.1:3951946-3951965 MS.gene54701:intron 25.0%
! GGAATCAAACAAAAATAGAA+AGG - chr6.1:3952172-3952191 None:intergenic 25.0%
! TAAGAAAGAACTTTCTGATA+AGG - chr6.1:3952205-3952224 None:intergenic 25.0%
! TTCTGATAAGGATGTTTAAA+GGG - chr6.1:3952193-3952212 None:intergenic 25.0%
! TTTCTGATAAGGATGTTTAA+AGG - chr6.1:3952194-3952213 None:intergenic 25.0%
!! AAATATGAAGTGTTACGTTA+TGG - chr6.1:3952683-3952702 None:intergenic 25.0%
!! TCTAAAACTAAAAAGACCAA+TGG + chr6.1:3952428-3952447 MS.gene54701:intron 25.0%
!! TCTTTTCTATATCTTTCCAT+TGG - chr6.1:3952447-3952466 None:intergenic 25.0%
!!! AAAAATCCTTGTTTGTTATG+AGG - chr6.1:3952599-3952618 None:intergenic 25.0%
!!! AAAATTTTAGAGGTGAAGTA+TGG - chr6.1:3953433-3953452 None:intergenic 25.0%
ACAAGTAGAGTTACTAAGTT+AGG - chr6.1:3953543-3953562 None:intergenic 30.0%
GAGTGAATTTGACAAAATCA+CGG - chr6.1:3952809-3952828 None:intergenic 30.0%
TAAGGTGGTGATTTAACTAA+AGG - chr6.1:3952992-3953011 None:intergenic 30.0%
TATGGTAACAGAGAAAAATG+TGG + chr6.1:3953866-3953885 MS.gene54701:CDS 30.0%
TGCCCACAAAATAAAAATAC+AGG - chr6.1:3953735-3953754 None:intergenic 30.0%
TTTCTCTAACTTAGAACAAG+AGG - chr6.1:3952390-3952409 None:intergenic 30.0%
! TGTTTTGCCTAGAATGTTTT+TGG - chr6.1:3953787-3953806 None:intergenic 30.0%
ACAATAGGTGGTGATTGATA+TGG - chr6.1:3953088-3953107 None:intergenic 35.0%
ACTATAGGTGGTGATTGATA+AGG - chr6.1:3953193-3953212 None:intergenic 35.0%
ATAGGTGCCAAAAACATTCT+AGG + chr6.1:3953777-3953796 MS.gene54701:CDS 35.0%
CATGATTTGACTATTGGAGT+AGG - chr6.1:3953307-3953326 None:intergenic 35.0%
CCAATAGTCAAATCATGGAA+GGG + chr6.1:3953310-3953329 MS.gene54701:CDS 35.0%
CTACTCCAATAGTCAAATCA+TGG + chr6.1:3953305-3953324 MS.gene54701:CDS 35.0%
GAGTAAAGATTATACCTTCG+TGG - chr6.1:3951899-3951918 None:intergenic 35.0%
GATTTAACTAAAGGTGGTGT+TGG - chr6.1:3952983-3953002 None:intergenic 35.0%
TCAATCACCACCTATTGTAA+AGG + chr6.1:3953090-3953109 MS.gene54701:CDS 35.0%
TCCAATAGTCAAATCATGGA+AGG + chr6.1:3953309-3953328 MS.gene54701:CDS 35.0%
TCTCGTCTATAGTAAAATCG+CGG - chr6.1:3952756-3952775 None:intergenic 35.0%
TGATGAAGATCTCAAGATAG+TGG + chr6.1:3952118-3952137 MS.gene54701:CDS 35.0%
TTATGAGGTTAGGGAAATGT+CGG - chr6.1:3952584-3952603 None:intergenic 35.0%
TTGACAAAATCACGGTAACA+TGG - chr6.1:3952801-3952820 None:intergenic 35.0%
!! ACTATTGGTGGTGATTGATA+AGG - chr6.1:3953256-3953275 None:intergenic 35.0%
!! AGTAATGTGATATTTGGTGC+AGG + chr6.1:3952889-3952908 MS.gene54701:intron 35.0%
!! CCTTGTTTGTTATGAGGTTA+GGG - chr6.1:3952593-3952612 None:intergenic 35.0%
!! TCCTTGTTTGTTATGAGGTT+AGG - chr6.1:3952594-3952613 None:intergenic 35.0%
!!! CTCATTTTTTGGTACTAGAG+AGG + chr6.1:3953509-3953528 MS.gene54701:intron 35.0%
!!! TAAGGAGGTGTTTTCACTAT+AGG - chr6.1:3953238-3953257 None:intergenic 35.0%
ATAGGTGGTGATTGATAAGG+TGG - chr6.1:3953190-3953209 None:intergenic 40.0%
ATAGGTGGTGATTGATATGG+TGG - chr6.1:3953085-3953104 None:intergenic 40.0%
CCCTAACCTCATAACAAACA+AGG + chr6.1:3952590-3952609 MS.gene54701:intron 40.0%
CCCTTCCATGATTTGACTAT+TGG - chr6.1:3953313-3953332 None:intergenic 40.0%
GAAGGAGGTGATTTCACAAT+AGG - chr6.1:3953043-3953062 None:intergenic 40.0%
GAGTTACTAAGTTAGGCATG+TGG - chr6.1:3953536-3953555 None:intergenic 40.0%
GATTTCACAATAGGTGGTGT+TGG - chr6.1:3953034-3953053 None:intergenic 40.0%
GATTTGACTATTGGAGTAGG+TGG - chr6.1:3953304-3953323 None:intergenic 40.0%
GCATTCCACTATGTGGTTAT+AGG + chr6.1:3953759-3953778 MS.gene54701:CDS 40.0%
GGTGGTGATTTAACTAAAGG+TGG - chr6.1:3952989-3953008 None:intergenic 40.0%
TACACTGATATGGTGACTCA+TGG + chr6.1:3953896-3953915 MS.gene54701:CDS 40.0%
TCAATCACCACCTATAGTGA+AGG + chr6.1:3953195-3953214 MS.gene54701:CDS 40.0%
TCTCTGTTACCATAAGTTCC+TGG - chr6.1:3953860-3953879 None:intergenic 40.0%
TGGCAAGTGTTACACTGATA+TGG + chr6.1:3953886-3953905 MS.gene54701:CDS 40.0%
TGTTACCATAAGTTCCTGGA+GGG - chr6.1:3953856-3953875 None:intergenic 40.0%
! TAAGGTGGTGTTTTCACCAA+AGG - chr6.1:3953175-3953194 None:intergenic 40.0%
! TATGGTGGTGATTTCACCAA+TGG - chr6.1:3953070-3953089 None:intergenic 40.0%
! TTAACTAAAGGTGGTGTTGG+TGG - chr6.1:3952980-3952999 None:intergenic 40.0%
! TTCACTGGTGGTGATTGATA+AGG - chr6.1:3953010-3953029 None:intergenic 40.0%
!! ACAGGTGGTTTTACTATTGG+TGG - chr6.1:3953268-3953287 None:intergenic 40.0%
!! ATTGGTGGTGATTGATAAGG+AGG - chr6.1:3953253-3953272 None:intergenic 40.0%
!! GCAACAGGTGGTTTTACTAT+TGG - chr6.1:3953271-3953290 None:intergenic 40.0%
CTGTTACCATAAGTTCCTGG+AGG - chr6.1:3953857-3953876 None:intergenic 45.0%
GCAGATTGCATTCCACTATG+TGG + chr6.1:3953752-3953771 MS.gene54701:intron 45.0%
GGAGGTGATTTCACAATAGG+TGG - chr6.1:3953040-3953059 None:intergenic 45.0%
TGGCACCTATAACCACATAG+TGG - chr6.1:3953767-3953786 None:intergenic 45.0%
TTCACTATAGGTGGAGGAGT+TGG - chr6.1:3953226-3953245 None:intergenic 45.0%
TTGACTATTGGAGTAGGTGG+TGG - chr6.1:3953301-3953320 None:intergenic 45.0%
! ACTGGTGGTGATTGATAAGG+TGG - chr6.1:3953007-3953026 None:intergenic 45.0%
! GATTTCACCAATGGTGGTGA+AGG - chr6.1:3953061-3953080 None:intergenic 45.0%
! GGTGTTTTCACTATAGGTGG+AGG - chr6.1:3953232-3953251 None:intergenic 45.0%
! GTTTTCACCAAAGGAGGAGA+AGG - chr6.1:3953166-3953185 None:intergenic 45.0%
!! ATAGGTGGTGTTGGTTTCAC+TGG - chr6.1:3953025-3953044 None:intergenic 45.0%
!! CATGCATGACTTGTTGTGAC+CGG + chr6.1:3953819-3953838 MS.gene54701:CDS 45.0%
!! GAAGGTGCCTTTACAATAGG+TGG - chr6.1:3953100-3953119 None:intergenic 45.0%
!! GGAGAAGGTGCCTTTACAAT+AGG - chr6.1:3953103-3953122 None:intergenic 45.0%
!! GGAGAAGGTGGTGTTACTAT+AGG - chr6.1:3952947-3952966 None:intergenic 45.0%
!! GGTGGTGTTACTATAGGACT+TGG - chr6.1:3952941-3952960 None:intergenic 45.0%
!! GGTGTTACTATAGGACTTGG+TGG - chr6.1:3952938-3952957 None:intergenic 45.0%
!!! GGAGGTGTTTTCACTATAGG+TGG - chr6.1:3953235-3953254 None:intergenic 45.0%
!!! TTTTTTTTTTAAAGAAAATT+AGG + chr6.1:3952615-3952634 MS.gene54701:intron 5.0%
AACACCACCTTCTCCAGTGA+AGG + chr6.1:3952952-3952971 MS.gene54701:CDS 50.0%
ACTATAGGTGGAGGAGTTGG+TGG - chr6.1:3953223-3953242 None:intergenic 50.0%
ATCACCTCCTTCACCACCAT+TGG + chr6.1:3953051-3953070 MS.gene54701:CDS 50.0%
ATCACCTCCTTCTCCTCCTT+TGG + chr6.1:3953156-3953175 MS.gene54701:CDS 50.0%
GGTGGTGATTTCACCAATGG+TGG - chr6.1:3953067-3953086 None:intergenic 50.0%
GGTTTCACTAGAGGAGGAGA+AGG - chr6.1:3953118-3953137 None:intergenic 50.0%
TGTGTCCCTCCAGGAACTTA+TGG + chr6.1:3953848-3953867 MS.gene54701:CDS 50.0%
TTCACCAAAGGAGGAGAAGG+AGG - chr6.1:3953163-3953182 None:intergenic 50.0%
! GGTGGTGTTTTCACCAAAGG+AGG - chr6.1:3953172-3953191 None:intergenic 50.0%
! TTCACCAATGGTGGTGAAGG+AGG - chr6.1:3953058-3953077 None:intergenic 50.0%
! TTTTCTTGTGCTCGCCACGA+AGG + chr6.1:3951882-3951901 MS.gene54701:CDS 50.0%
!! ATAGGACTTGGTGGAGCTGT+AGG - chr6.1:3952929-3952948 None:intergenic 50.0%
!! ATTGGAGTAGGTGGTGGAGA+TGG - chr6.1:3953295-3953314 None:intergenic 50.0%
!! GGTGGTGTTGGTTTCACTAG+AGG - chr6.1:3953127-3953146 None:intergenic 50.0%
!! GGTGTTGGTTTCACTAGAGG+AGG - chr6.1:3953124-3953143 None:intergenic 50.0%
!! GTTGGTGGTGCCTTCACTAT+AGG - chr6.1:3953208-3953227 None:intergenic 50.0%
!! TAGGACTTGGTGGAGCTGTA+GGG - chr6.1:3952928-3952947 None:intergenic 50.0%
CTGGAGGGACACATTTGCAC+CGG - chr6.1:3953841-3953860 None:intergenic 55.0%
GGTGGTGCCTTCACTATAGG+TGG - chr6.1:3953205-3953224 None:intergenic 55.0%
!! GGTGGTGTTGGTTTCACTGG+TGG - chr6.1:3953022-3953041 None:intergenic 55.0%
CGGTGCAAATGTGTCCCTCC+AGG + chr6.1:3953839-3953858 MS.gene54701:CDS 60.0%
GGTGCCTTCACTGGAGAAGG+TGG - chr6.1:3952959-3952978 None:intergenic 60.0%
GGTGGAGATGGAGCAACAGG+TGG - chr6.1:3953283-3953302 None:intergenic 60.0%
GGTGGTGCCTTCACTGGAGA+AGG - chr6.1:3952962-3952981 None:intergenic 60.0%
!! GGTGGTGGAGATGGAGCAAC+AGG - chr6.1:3953286-3953305 None:intergenic 60.0%
!! GGTGTTGGTGGTGCCTTCAC+TGG - chr6.1:3952968-3952987 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 3951850 3953940 3951850 ID=MS.gene54701
chr6.1 mRNA 3951850 3953940 3951850 ID=MS.gene54701.t1;Parent=MS.gene54701
chr6.1 exon 3951850 3951903 3951850 ID=MS.gene54701.t1.exon1;Parent=MS.gene54701.t1
chr6.1 CDS 3951850 3951903 3951850 ID=cds.MS.gene54701.t1;Parent=MS.gene54701.t1
chr6.1 exon 3952107 3952139 3952107 ID=MS.gene54701.t1.exon2;Parent=MS.gene54701.t1
chr6.1 CDS 3952107 3952139 3952107 ID=cds.MS.gene54701.t1;Parent=MS.gene54701.t1
chr6.1 exon 3952911 3953331 3952911 ID=MS.gene54701.t1.exon3;Parent=MS.gene54701.t1
chr6.1 CDS 3952911 3953331 3952911 ID=cds.MS.gene54701.t1;Parent=MS.gene54701.t1
chr6.1 exon 3953756 3953940 3953756 ID=MS.gene54701.t1.exon4;Parent=MS.gene54701.t1
chr6.1 CDS 3953756 3953940 3953756 ID=cds.MS.gene54701.t1;Parent=MS.gene54701.t1
Gene Sequence

>MS.gene54701

ATGGCTTCAAAATCCATTTTTCTTCTAAGCATTTTTCTTGTGCTCGCCACGAAGGTATAATCTTTACTCTACTTTTCACTTACTCATTATTTGAACATATTTATCTACTTAGAAGGTGGAATTTATTTATTTAATTTCATGATTAAGAGTTAAAAGTTTTTTCATTTGAACATACCAATTTTTTTCTTCTTGATTTAGTGTTTTATTTAACTTGAATATTTCACACTAATGTTAATATAATATATCTTTATGTGCAGGTTTATTCTTATGATGAAGATCTCAAGATAGTGGTATGTTTTTTAAACTTATAAAATATTTCCCTTTCTATTTTTGTTTGATTCCCTTTAAACATCCTTATCAGAAAGTTCTTTCTTATATAGTATTGTCACTATCTAGATTTTTTTTTAATAAATAATATTAAACATTAATAGAGTTCTAATCTAGCTTATTATGCATTTCATTTCATTTTCTAAGAAAAACGTTATTGCATTTCCTTTATTAAAAAACAGATCAACAACTCTGTTTTTCTAGTCATGTCCTCTTGTTCTAAGTTAGAGAAAAGAGAAATTAGGTTAAAATCTAAAACTAAAAAGACCAATGGAAAGATATAGAAAAGAGTAATTAACACTGTTAAAAATATAACACACTATTATTACTACATATAATGTACATTTAATATATTACCTACCATACTTCTAATTTTTATTTTAAGAAAATTAGTAGTTGTTTTTCCGACATTTCCCTAACCTCATAACAAACAAGGATTTTTTTTTTTAAAGAAAATTAGGCATATATAGATTCACCATATTACGATAATTTTGTCAAATTCACCATAACGTAACACTTCATATTTTGATCCAAAACATTAACTACTATACAAATGAGTGCATCTATAGTATAACACCGCGATTTTACTATAGACGAGACATTAAAAATACAATAGATGAACCATGTTACCGTGATTTTGTCAAATTCACTCTATACATACAATGAGCGTTTAGAAGTTAGCATTTTTCTTATGAAAAAAAGCTACAAAATTAGTAATGTGATATTTGGTGCAGGTGAACTATGCAAACCCTACAGCTCCACCAAGTCCTATAGTAACACCACCTTCTCCAGTGAAGGCACCACCAACACCACCTTTAGTTAAATCACCACCTTATCAATCACCACCAGTGAAACCAACACCACCTATTGTGAAATCACCTCCTTCACCACCATTGGTGAAATCACCACCATATCAATCACCACCTATTGTAAAGGCACCTTCTCCTCCTCTAGTGAAACCAACACCACCTATTGTGAAATCACCTCCTTCTCCTCCTTTGGTGAAAACACCACCTTATCAATCACCACCTATAGTGAAGGCACCACCAACTCCTCCACCTATAGTGAAAACACCTCCTTATCAATCACCACCAATAGTAAAACCACCTGTTGCTCCATCTCCACCACCTACTCCAATAGTCAAATCATGGAAGGGTAAGTTAATTTCCATTTCTCTGTCTTTAATATGTAACATTTTAATAGTACATAGATTATGCAAATGTTTCACAATATAATAGTTTTAAAATTTAGAACCATACTTCACCTCTAAAATTTTAGTATAAATATTTATATACAAAAATATGATTATATGTTTGGCCCAAAACTTTTTTGCTCATTTTTTGGTACTAGAGAGGACCACATGCCTAACTTAGTAACTCTACTTGTGCATAGTAATTAAATTCTAAGACTTGTACATATGTCAAGTTGAATTTACATTTTATTTATTATATGATAAGTATCATAAATTCACATATATATTGTGGTAAAATGTTTGTTAGAGTAGTGATTAATTAATATTGGATTATTGATGTTAATTAGTGATTAATTACTGAAACCTGTATTTTTATTTTGTGGGCAGATTGCATTCCACTATGTGGTTATAGGTGCCAAAAACATTCTAGGCAAAACACATGCATAAGAGCATGCATGACTTGTTGTGACCGGTGCAAATGTGTCCCTCCAGGAACTTATGGTAACAGAGAAAAATGTGGCAAGTGTTACACTGATATGGTGACTCATGGCAATAGACCTAAGTGTCCATAG
Protein sequence

>MS.gene54701.t1

MASKSIFLLSIFLVLATKVYSYDEDLKIVVNYANPTAPPSPIVTPPSPVKAPPTPPLVKSPPYQSPPVKPTPPIVKSPPSPPLVKSPPYQSPPIVKAPSPPLVKPTPPIVKSPPSPPLVKTPPYQSPPIVKAPPTPPPIVKTPPYQSPPIVKPPVAPSPPPTPIVKSWKDCIPLCGYRCQKHSRQNTCIRACMTCCDRCKCVPPGTYGNREKCGKCYTDMVTHGNRPKCP