AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54756.t1 MTR_1g095810 99.660 589 2 0 1 589 1 589 0.0 1203
MS.gene54756.t1 MTR_1g026830 94.037 587 34 1 3 589 6 591 0.0 1128
MS.gene54756.t1 MTR_2g100230 40.431 418 236 5 115 529 66 473 3.50e-100 313
MS.gene54756.t1 MTR_3g467550 38.614 404 226 5 109 498 77 472 1.98e-96 305
MS.gene54756.t1 MTR_4g105100 40.334 419 237 5 115 530 172 580 1.86e-94 302
MS.gene54756.t1 MTR_3g083690 38.889 414 227 7 134 530 134 538 1.37e-93 300
MS.gene54756.t1 MTR_7g109720 43.468 421 222 8 115 530 202 611 1.52e-93 304
MS.gene54756.t1 MTR_1g054630 39.803 407 224 7 134 526 143 542 2.53e-91 293
MS.gene54756.t1 MTR_6g005550 39.563 412 229 8 124 529 144 541 2.62e-91 296
MS.gene54756.t1 MTR_3g467550 38.250 400 202 6 109 498 77 441 2.98e-90 288
MS.gene54756.t1 MTR_4g134170 36.449 428 247 4 118 527 260 680 7.20e-90 292
MS.gene54756.t1 MTR_6g005320 36.574 432 247 5 114 527 218 640 1.10e-88 288
MS.gene54756.t1 MTR_4g114120 38.537 410 228 5 136 528 131 533 1.26e-86 283
MS.gene54756.t1 MTR_2g007000 36.726 452 263 9 115 558 474 910 1.74e-83 283
MS.gene54756.t1 MTR_2g032630 39.709 413 231 7 123 530 474 873 1.03e-82 281
MS.gene54756.t1 MTR_3g467550 36.675 379 218 5 109 473 77 447 5.91e-82 265
MS.gene54756.t1 MTR_5g027840 38.481 395 226 8 136 523 95 479 2.44e-78 257
MS.gene54756.t1 MTR_4g105100 39.368 348 199 4 115 459 172 510 2.09e-71 239
MS.gene54756.t1 MTR_5g090120 38.889 360 197 9 155 506 91 435 2.61e-64 221
MS.gene54756.t1 MTR_4g079320 33.498 406 246 7 146 541 20 411 2.78e-64 225
MS.gene54756.t1 MTR_6g033070 31.616 427 275 9 124 546 120 533 2.93e-63 217
MS.gene54756.t1 MTR_7g056830 33.777 376 225 6 137 505 2 360 5.82e-63 214
MS.gene54756.t1 MTR_6g082080 33.777 376 225 6 137 505 2 360 6.67e-63 214
MS.gene54756.t1 MTR_3g449250 37.989 358 199 9 155 504 100 442 8.92e-63 216
MS.gene54756.t1 MTR_3g449250 37.989 358 199 9 155 504 100 442 1.48e-62 216
MS.gene54756.t1 MTR_3g049990 35.342 365 216 6 145 502 152 503 5.56e-61 216
MS.gene54756.t1 MTR_7g100820 34.135 416 243 11 125 529 110 505 1.57e-59 209
MS.gene54756.t1 MTR_2g041140 34.771 371 223 6 145 509 141 498 2.30e-59 211
MS.gene54756.t1 MTR_2g066050 34.239 368 215 6 145 502 53 403 2.01e-57 201
MS.gene54756.t1 MTR_2g039960 30.848 389 250 8 145 530 41 413 7.60e-55 191
MS.gene54756.t1 MTR_4g125970 30.848 389 250 8 145 530 41 413 1.47e-54 191
MS.gene54756.t1 MTR_2g438110 31.458 391 249 7 143 530 32 406 1.90e-54 190
MS.gene54756.t1 MTR_4g125970 30.848 389 250 8 145 530 58 430 3.90e-54 190
MS.gene54756.t1 MTR_2g099620 30.513 390 252 8 144 530 24 397 4.47e-53 186
MS.gene54756.t1 MTR_2g099620 30.513 390 252 8 144 530 40 413 5.84e-53 186
MS.gene54756.t1 MTR_4g112340 35.629 334 196 9 163 488 115 437 1.12e-52 189
MS.gene54756.t1 MTR_8g018400 29.820 389 254 8 145 530 41 413 4.06e-52 184
MS.gene54756.t1 MTR_3g071620 32.419 401 231 13 146 517 15 404 4.59e-52 188
MS.gene54756.t1 MTR_2g055850 31.492 362 233 6 144 499 90 442 9.27e-52 187
MS.gene54756.t1 MTR_8g027780 34.511 368 213 10 146 493 102 461 5.44e-50 182
MS.gene54756.t1 MTR_7g076820 28.756 386 258 5 146 530 151 520 2.78e-49 179
MS.gene54756.t1 MTR_7g076830 29.016 386 257 5 146 530 144 513 3.19e-49 179
MS.gene54756.t1 MTR_1g102410 32.678 407 218 11 132 504 34 418 4.70e-49 181
MS.gene54756.t1 MTR_2g043360 28.365 416 218 8 163 505 60 468 5.43e-49 180
MS.gene54756.t1 MTR_7g076800 28.756 386 258 5 146 530 142 511 5.56e-49 178
MS.gene54756.t1 MTR_6g056080 32.533 375 229 9 140 504 101 461 8.57e-49 181
MS.gene54756.t1 MTR_4g059460 28.780 410 212 9 163 499 63 465 1.07e-48 179
MS.gene54756.t1 MTR_8g027775 32.391 389 224 11 133 493 80 457 2.61e-48 177
MS.gene54756.t1 MTR_4g010565 30.939 362 227 8 146 500 125 470 3.40e-48 176
MS.gene54756.t1 MTR_3g107420 30.641 359 232 7 146 500 48 393 3.98e-47 171
MS.gene54756.t1 MTR_1g012420 29.319 382 253 7 146 523 48 416 1.05e-46 170
MS.gene54756.t1 MTR_6g039840 29.306 389 235 9 137 501 102 474 1.90e-43 165
MS.gene54756.t1 MTR_8g027770 32.865 356 210 8 156 493 212 556 6.39e-43 164
MS.gene54756.t1 MTR_8g097000 33.148 359 217 10 156 499 299 649 1.46e-42 163
MS.gene54756.t1 MTR_2g063080 27.446 419 247 8 137 503 101 514 2.13e-41 157
MS.gene54756.t1 MTR_5g092560 33.140 344 211 9 164 499 95 427 3.37e-41 159
MS.gene54756.t1 MTR_1g061970 31.139 395 212 15 166 521 102 475 2.14e-40 154
MS.gene54756.t1 MTR_8g027780 32.945 343 202 10 146 468 102 436 9.66e-40 151
MS.gene54756.t1 MTR_7g057250 27.902 448 245 11 146 523 164 603 3.71e-39 154
MS.gene54756.t1 MTR_4g068990 31.662 379 234 13 141 510 73 435 1.71e-37 148
MS.gene54756.t1 MTR_1g083130 26.506 415 238 9 144 506 25 424 4.19e-36 143
MS.gene54756.t1 MTR_4g112320 35.294 238 143 6 259 488 21 255 4.41e-35 137
MS.gene54756.t1 MTR_3g118120 26.494 385 246 11 143 499 130 505 7.42e-34 135
MS.gene54756.t1 MTR_4g049910 29.737 380 214 10 146 499 56 408 1.02e-33 134
MS.gene54756.t1 MTR_2g043360 26.857 350 173 7 239 505 1 350 9.54e-33 132
MS.gene54756.t1 MTR_0915s0010 28.425 292 193 4 162 452 6 282 8.78e-32 124
MS.gene54756.t1 MTR_1g046570 29.603 277 181 8 264 530 126 398 3.19e-30 123
MS.gene54756.t1 MTR_6g039840 28.947 304 177 8 221 501 11 298 5.59e-29 121
MS.gene54756.t1 MTR_5g069330 26.287 369 240 12 143 500 5 352 8.18e-29 119
MS.gene54756.t1 MTR_5g069330 26.287 369 240 12 143 500 1 348 1.12e-28 119
MS.gene54756.t1 MTR_4g131750 28.426 394 219 13 135 488 72 442 5.57e-28 117
MS.gene54756.t1 MTR_4g459350 32.512 203 111 4 163 346 60 255 2.97e-26 108
MS.gene54756.t1 MTR_8g018370 23.823 361 231 7 175 530 3 324 1.38e-24 105
MS.gene54756.t1 MTR_4g077370 33.810 210 112 6 145 346 250 440 8.56e-24 105
MS.gene54756.t1 MTR_4g077370 30.806 211 102 6 145 346 2 177 1.33e-18 89.0
MS.gene54756.t1 MTR_5g092560 32.178 202 131 4 304 499 15 216 1.30e-23 105
MS.gene54756.t1 MTR_4g068990 31.925 213 136 6 304 510 15 224 2.46e-21 98.2
MS.gene54756.t1 MTR_8g042690 24.425 348 228 9 168 499 41 369 3.53e-21 97.1
MS.gene54756.t1 MTR_3g107420 30.049 203 127 5 146 346 48 237 1.99e-20 92.8
MS.gene54756.t1 MTR_8g032230 35.294 170 96 4 137 305 2 158 5.42e-20 87.8
MS.gene54756.t1 MTR_1g022305 25.731 342 176 11 167 504 26 293 7.69e-20 93.2
MS.gene54756.t1 MTR_5g077690 25.393 382 218 12 182 503 70 444 2.25e-19 92.0
MS.gene54756.t1 MTR_3g063040 23.810 357 230 10 153 496 2 329 2.26e-13 73.9
MS.gene54756.t1 MTR_8g080160 33.051 118 74 1 388 500 480 597 9.93e-13 71.6
MS.gene54756.t1 MTR_8g062720 25.743 202 132 4 320 505 345 544 4.09e-12 69.3
MS.gene54756.t1 MTR_0427s0010 28.302 212 115 6 314 508 1 192 1.03e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54756.t1 AT5G51280 87.097 589 74 1 1 589 5 591 0.0 1061
MS.gene54756.t1 AT4G33370 75.382 589 98 1 1 589 1 542 0.0 910
MS.gene54756.t1 AT1G55150 39.277 415 239 5 118 529 73 477 9.55e-100 312
MS.gene54756.t1 AT1G55150 39.277 415 239 5 118 529 98 502 6.24e-99 311
MS.gene54756.t1 AT5G63120 41.190 420 232 7 115 530 136 544 2.35e-97 309
MS.gene54756.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.41e-93 300
MS.gene54756.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.41e-93 300
MS.gene54756.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.41e-93 300
MS.gene54756.t1 AT2G47330 40.708 452 251 9 85 530 168 608 3.56e-93 302
MS.gene54756.t1 AT2G33730 37.617 428 242 4 118 527 287 707 1.07e-92 300
MS.gene54756.t1 AT3G58570 38.875 409 229 7 132 526 134 535 3.62e-92 297
MS.gene54756.t1 AT2G42520 37.897 409 233 6 132 526 147 548 5.95e-92 296
MS.gene54756.t1 AT2G42520 37.897 409 233 6 132 526 147 548 5.95e-92 296
MS.gene54756.t1 AT2G42520 37.897 409 233 6 132 526 147 548 5.95e-92 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 162 600 5.29e-90 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.26e-88 296
MS.gene54756.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.64e-87 284
MS.gene54756.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.64e-87 284
MS.gene54756.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.64e-87 284
MS.gene54756.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.74e-87 284
MS.gene54756.t1 AT5G14610 38.765 405 228 7 132 530 149 539 7.11e-86 280
MS.gene54756.t1 AT5G14610 38.765 405 228 7 132 530 149 539 8.42e-86 280
MS.gene54756.t1 AT5G14610 38.765 405 228 7 132 530 157 547 1.51e-85 280
MS.gene54756.t1 AT3G06480 39.709 413 231 7 123 530 414 813 1.38e-80 275
MS.gene54756.t1 AT1G31970 38.462 416 220 12 127 523 95 493 5.23e-80 262
MS.gene54756.t1 AT5G14610 37.440 414 237 8 125 530 208 607 1.62e-78 262
MS.gene54756.t1 AT5G14610 39.050 379 211 7 158 530 44 408 1.64e-78 257
MS.gene54756.t1 AT5G14610 39.050 379 211 7 158 530 44 408 1.64e-78 257
MS.gene54756.t1 AT3G09620 34.581 454 245 9 115 560 367 776 6.47e-75 258
MS.gene54756.t1 AT3G09620 34.581 454 245 9 115 560 368 777 7.02e-75 258
MS.gene54756.t1 AT5G63120 39.828 349 196 6 115 459 136 474 6.48e-73 241
MS.gene54756.t1 AT5G63120 39.828 349 196 6 115 459 136 474 1.04e-72 241
MS.gene54756.t1 AT5G63120 39.828 349 196 6 115 459 136 474 1.04e-72 241
MS.gene54756.t1 AT5G63120 39.828 349 196 6 115 459 136 474 1.04e-72 241
MS.gene54756.t1 AT1G28180 38.375 357 207 5 174 527 3 349 2.16e-71 234
MS.gene54756.t1 AT1G77030 34.010 394 242 6 146 535 30 409 1.50e-65 229
MS.gene54756.t1 AT5G14610 35.754 358 211 6 128 479 153 497 8.26e-65 221
MS.gene54756.t1 AT5G60990 33.867 375 236 4 137 505 2 370 1.04e-64 219
MS.gene54756.t1 AT1G16280 33.257 436 255 11 145 567 59 471 1.64e-64 219
MS.gene54756.t1 AT3G02065 32.220 419 266 7 119 529 83 491 7.31e-64 218
MS.gene54756.t1 AT3G02065 32.220 419 266 7 119 529 83 491 7.31e-64 218
MS.gene54756.t1 AT3G09720 33.488 430 254 11 111 529 105 513 8.01e-62 214
MS.gene54756.t1 AT3G09720 33.488 430 254 11 111 529 105 513 8.01e-62 214
MS.gene54756.t1 AT3G06480 38.286 350 199 6 124 468 415 752 2.15e-61 217
MS.gene54756.t1 AT4G16630 33.824 408 237 9 145 536 168 558 4.34e-61 216
MS.gene54756.t1 AT3G22330 35.311 354 214 7 155 504 115 457 1.21e-60 212
MS.gene54756.t1 AT5G26742 32.990 388 220 6 135 506 98 461 1.63e-58 209
MS.gene54756.t1 AT5G26742 32.990 388 220 6 135 506 98 461 1.65e-58 209
MS.gene54756.t1 AT3G22310 34.626 361 221 7 148 504 120 469 7.39e-58 204
MS.gene54756.t1 AT3G22310 34.626 361 221 7 148 504 120 469 9.62e-58 204
MS.gene54756.t1 AT5G65900 33.428 353 214 7 144 488 154 493 7.97e-57 202
MS.gene54756.t1 AT3G13920 30.513 390 252 8 144 530 39 412 2.10e-56 196
MS.gene54756.t1 AT3G13920 30.513 390 252 8 144 530 29 402 2.15e-56 195
MS.gene54756.t1 AT1G51380 31.122 392 248 6 142 530 20 392 3.63e-56 194
MS.gene54756.t1 AT3G18600 33.425 362 226 6 131 488 77 427 1.14e-55 197
MS.gene54756.t1 AT5G26742 32.115 383 224 6 179 545 44 406 1.84e-55 199
MS.gene54756.t1 AT3G13920 31.183 372 237 8 162 530 52 407 3.75e-55 192
MS.gene54756.t1 AT3G19760 30.964 394 249 7 142 530 33 408 5.18e-55 192
MS.gene54756.t1 AT3G13920 30.130 385 251 7 144 525 39 408 2.62e-54 190
MS.gene54756.t1 AT1G72730 29.820 389 254 8 145 530 42 414 3.63e-54 190
MS.gene54756.t1 AT3G13920 30.130 385 251 7 144 525 43 412 3.65e-54 190
MS.gene54756.t1 AT1G54270 30.612 392 249 8 144 530 39 412 5.23e-53 186
MS.gene54756.t1 AT3G02065 31.593 364 233 6 172 529 1 354 5.61e-53 185
MS.gene54756.t1 AT1G71370 32.086 374 232 9 139 499 9 373 6.10e-53 190
MS.gene54756.t1 AT1G54270 31.283 374 234 8 162 530 52 407 8.76e-52 183
MS.gene54756.t1 AT5G62190 32.283 381 234 9 140 510 95 461 5.31e-51 187
MS.gene54756.t1 AT2G45810 30.618 356 231 4 146 500 156 496 7.18e-50 181
MS.gene54756.t1 AT5G05450 30.990 384 227 10 144 499 9 382 1.01e-49 182
MS.gene54756.t1 AT3G61240 30.337 356 230 5 146 499 126 465 1.22e-49 179
MS.gene54756.t1 AT3G61240 30.337 356 230 5 146 499 126 465 1.22e-49 179
MS.gene54756.t1 AT4G00660 29.737 380 250 5 146 524 133 496 1.50e-49 179
MS.gene54756.t1 AT4G00660 29.737 380 250 5 146 524 133 496 1.50e-49 179
MS.gene54756.t1 AT5G11170 30.789 380 231 11 134 499 31 392 2.87e-48 174
MS.gene54756.t1 AT5G11200 30.789 380 231 11 134 499 31 392 2.87e-48 174
MS.gene54756.t1 AT2G40700 29.710 414 205 10 163 499 50 454 1.11e-46 174
MS.gene54756.t1 AT1G12770 27.725 422 242 9 138 503 101 515 2.75e-45 169
MS.gene54756.t1 AT1G12770 27.725 422 242 9 138 503 101 515 2.75e-45 169
MS.gene54756.t1 AT5G54910 33.075 387 230 12 143 519 70 437 8.28e-44 167
MS.gene54756.t1 AT5G63630 31.429 350 223 6 156 493 66 410 1.16e-43 164
MS.gene54756.t1 AT5G11170 32.209 326 194 10 183 499 2 309 1.70e-43 159
MS.gene54756.t1 AT5G11200 28.637 433 233 14 134 510 31 443 3.87e-43 161
MS.gene54756.t1 AT5G63630 31.429 350 223 6 156 493 260 604 9.94e-43 164
MS.gene54756.t1 AT2G07750 31.281 406 243 10 111 493 340 732 1.25e-42 164
MS.gene54756.t1 AT5G08610 32.022 356 213 7 156 493 394 738 2.01e-42 164
MS.gene54756.t1 AT4G09730 28.646 384 232 10 143 501 111 477 7.51e-42 160
MS.gene54756.t1 AT5G11200 28.082 438 226 13 134 499 31 451 1.49e-41 157
MS.gene54756.t1 AT1G63250 31.116 421 255 12 156 556 340 745 1.77e-41 160
MS.gene54756.t1 AT5G08620 30.806 422 254 13 156 556 92 496 4.75e-41 157
MS.gene54756.t1 AT1G71280 30.838 334 190 10 137 463 11 310 1.71e-37 142
MS.gene54756.t1 AT3G53110 29.319 382 233 13 133 493 80 445 5.16e-37 144
MS.gene54756.t1 AT1G71280 30.473 338 194 10 137 467 11 314 8.42e-37 143
MS.gene54756.t1 AT3G06980 28.460 383 238 13 144 499 374 747 5.52e-33 135
MS.gene54756.t1 AT4G34910 28.101 395 225 10 144 489 46 430 5.80e-33 134
MS.gene54756.t1 AT3G16840 27.209 430 232 11 146 504 193 612 6.92e-32 132
MS.gene54756.t1 AT3G16840 27.209 430 232 11 146 504 192 611 7.50e-32 131
MS.gene54756.t1 AT1G51380 29.044 272 175 5 142 410 20 276 2.31e-28 115
MS.gene54756.t1 AT5G19210 26.579 380 243 11 134 488 66 434 1.77e-27 116
MS.gene54756.t1 AT1G51380 30.093 216 137 2 142 357 20 221 1.27e-25 107
MS.gene54756.t1 AT1G51380 30.093 216 137 2 142 357 20 221 1.76e-25 107
MS.gene54756.t1 AT4G15850 25.182 413 233 12 157 503 44 446 2.61e-23 104
MS.gene54756.t1 AT5G19210 26.180 233 148 7 279 488 46 277 3.27e-16 80.5
MS.gene54756.t1 AT5G19210 26.180 233 148 7 279 488 46 277 3.27e-16 80.5
MS.gene54756.t1 AT1G28180 36.885 122 71 1 174 295 3 118 5.21e-15 72.0
MS.gene54756.t1 AT1G27880 23.955 359 228 12 171 513 274 603 2.97e-12 70.1
MS.gene54756.t1 AT1G27880 23.955 359 228 12 171 513 274 603 3.18e-12 70.1
MS.gene54756.t1 AT4G35740 20.800 375 241 13 140 488 5 349 3.83e-12 69.7

Find 156 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGCAAAGTTCTGAATTT+TGG 0.149090 1.2:+72677901 None:intergenic
AATAATAGAAAGGATTATTT+TGG 0.164744 1.2:-72677209 MS.gene54756:CDS
GTATGCCATTTCATCATTTA+AGG 0.167719 1.2:-72677624 MS.gene54756:CDS
CTCTTCTGATGTTCTAATTT+AGG 0.202029 1.2:+72677245 None:intergenic
CAGTGGCATATTATTGTTAA+TGG 0.225650 1.2:-72678544 MS.gene54756:CDS
CGTCCCACATTGACAATAAT+AGG 0.278247 1.2:+72677863 None:intergenic
ATATCCTTAAAATTCTTAAT+CGG 0.278731 1.2:+72678505 None:intergenic
GGCTGATCGATTGGTCGATT+TGG 0.290280 1.2:-72678005 MS.gene54756:CDS
GGCAAATCTTGATGTTATTC+AGG 0.295497 1.2:-72677831 MS.gene54756:CDS
GCTGATCGATTGGTCGATTT+GGG 0.307880 1.2:-72678004 MS.gene54756:CDS
CATATAGTTGTTGCTACTCC+TGG 0.309941 1.2:-72678097 MS.gene54756:CDS
TGTGCAGCCAACGCCTATTC+AGG 0.330764 1.2:-72678437 MS.gene54756:CDS
TTGATGACATGTTGAATATC+AGG 0.337184 1.2:+72677545 None:intergenic
TGTGCATATTGTGGCGGGCT+TGG 0.337993 1.2:-72677287 MS.gene54756:CDS
ATTATGATGCCGATTGTTCC+TGG 0.348651 1.2:-72678298 MS.gene54756:CDS
AGCTTCCATGGCGCGACGCT+TGG 0.358137 1.2:+72678888 None:intergenic
TATACTGAGCCTTTGCCTAC+TGG 0.358544 1.2:-72678628 MS.gene54756:CDS
TATTTGTCCGTCAAGGGAAT+TGG 0.365662 1.2:-72678254 MS.gene54756:CDS
TATTCAGGTGCAGGGTCTTC+CGG 0.370124 1.2:-72678422 MS.gene54756:CDS
TTGGCATAGTAGCAGAAAAT+AGG 0.371521 1.2:+72677924 None:intergenic
TTCTCACAAAATATAAGAAC+AGG 0.372394 1.2:+72677740 None:intergenic
TATCCTTAAAATTCTTAATC+GGG 0.374649 1.2:+72678506 None:intergenic
TCAACCAGCTCAGCCAAAAC+AGG 0.388073 1.2:+72677359 None:intergenic
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 1.2:-72677473 MS.gene54756:CDS
TCCAGCCTTAAATGATGAAA+TGG 0.394298 1.2:+72677619 None:intergenic
GAACTTTGCTAGAAGTGCTT+TGG 0.398689 1.2:-72677891 MS.gene54756:CDS
TGCCTAGCCAATTCCCTTGA+CGG 0.400861 1.2:+72678247 None:intergenic
GGAAGACCCTGCACCTGAAT+AGG 0.412380 1.2:+72678424 None:intergenic
GAAAATTATGTCCATAGGAT+TGG 0.415181 1.2:-72677500 MS.gene54756:CDS
ATTTCTTCATTATCTTCCAT+TGG 0.416148 1.2:+72677335 None:intergenic
GTGGAAGCCGTGGCTATTCA+TGG 0.417643 1.2:-72677671 MS.gene54756:CDS
CGCAATGGAAGAAGATGATT+CGG 0.423328 1.2:-72678830 MS.gene54756:CDS
TGCATTGCCATCATAATCAT+TGG 0.423892 1.2:+72678328 None:intergenic
CTCAGGCCTTTGCTTTGTAT+CGG 0.425118 1.2:-72678166 MS.gene54756:CDS
ATTGTCAATGTGGGACGTGC+AGG 0.426137 1.2:-72677857 MS.gene54756:CDS
TAAGCCAAGTCTACTTGTTA+AGG 0.431259 1.2:-72678785 MS.gene54756:CDS
GCAACTGATGTTGCATCTAA+AGG 0.432180 1.2:-72677578 MS.gene54756:CDS
ATGGCGCGACGCTTGGCCAC+AGG 0.433274 1.2:+72678895 None:intergenic
CAAGCAATGTTGTCTCACTT+TGG 0.433879 1.2:+72677423 None:intergenic
AACATCTTCAAAATCGGATC+CGG 0.439066 1.2:+72678475 None:intergenic
TCCCTCCCAGATAAAATAAC+CGG 0.440851 1.2:+72678403 None:intergenic
ATACTGAGCCTTTGCCTACT+GGG 0.441611 1.2:-72678627 MS.gene54756:CDS
GGAAGAAGAAGATGATTATG+AGG 0.447944 1.2:-72678926 MS.gene54756:CDS
TTGTTACCTTTGAAGGAAGC+TGG 0.448833 1.2:-72678199 MS.gene54756:CDS
CTAATTCACGAACCGACATA+AGG 0.449435 1.2:+72678665 None:intergenic
TCTGTTTAGCTTCTTGCAAA+AGG 0.453849 1.2:+72677390 None:intergenic
GCCATTTCATCATTTAAGGC+TGG 0.454604 1.2:-72677620 MS.gene54756:CDS
GTTCCTGGGGAAGGTCCGTT+TGG 0.454718 1.2:-72678283 MS.gene54756:CDS
TTCCGGTACGTCCAATCCTA+TGG 0.458107 1.2:+72677489 None:intergenic
ATCCTTTCTATTATTTGCAA+TGG 0.461654 1.2:+72677217 None:intergenic
TGCTACTCCTGGGAGGTTGA+AGG 0.465424 1.2:-72678086 MS.gene54756:CDS
TTTGAAGGAAGCTGGATATC+CGG 0.466679 1.2:-72678191 MS.gene54756:CDS
GCCAACGCCTATTCAGGTGC+AGG 0.470151 1.2:-72678431 MS.gene54756:CDS
TAATTCACGAACCGACATAA+GGG 0.473252 1.2:+72678666 None:intergenic
ATATAGTTGTTGCTACTCCT+GGG 0.476403 1.2:-72678096 MS.gene54756:CDS
AAGCTGGATATCCGGAGCTC+AGG 0.476787 1.2:-72678183 MS.gene54756:CDS
CATGAGTATCTTCTCTTGAA+AGG 0.476814 1.2:-72677695 MS.gene54756:CDS
TTATCTGGGAGGGATATGAT+TGG 0.476899 1.2:-72678394 MS.gene54756:CDS
CGTTGGCTGCACAATCCCCT+TGG 0.477106 1.2:+72678447 None:intergenic
TATTCATGGAGGCAAGGATC+AGG 0.479994 1.2:-72677657 MS.gene54756:CDS
CTCAGTATAAGTAATCCCTT+TGG 0.481450 1.2:+72678642 None:intergenic
GTCTGATTATTTGTCCGTCA+AGG 0.482454 1.2:-72678261 MS.gene54756:CDS
AATGATTATGATGGCAATGC+AGG 0.483668 1.2:-72678326 MS.gene54756:CDS
TGTTCTGTGACACTGATCTC+AGG 0.484362 1.2:+72678739 None:intergenic
GGACCTTCCCCAGGAACAAT+CGG 0.494587 1.2:+72678289 None:intergenic
TGTGGCCAAGCGTCGCGCCA+TGG 0.495459 1.2:-72678893 MS.gene54756:CDS
GAAGAAATCACAGGCATAAG+TGG 0.497165 1.2:-72677320 MS.gene54756:CDS
GGAGATGATTGAGAATTTGT+CGG 0.499681 1.2:-72678698 MS.gene54756:CDS
TTGAAGATGTTGAAAACCAA+GGG 0.508448 1.2:-72678463 MS.gene54756:CDS
CAAAGCAAAGGCCTGAGCTC+CGG 0.515925 1.2:+72678172 None:intergenic
TTATGATGCCGATTGTTCCT+GGG 0.517162 1.2:-72678297 MS.gene54756:CDS
TGTGCTTCCAATGATTATGA+TGG 0.518446 1.2:-72678335 MS.gene54756:CDS
ATGCCGATTGTTCCTGGGGA+AGG 0.520774 1.2:-72678292 MS.gene54756:CDS
ATCCTTAAAATTCTTAATCG+GGG 0.521926 1.2:+72678507 None:intergenic
AGGGAAAGCAACCGCCGCAA+TGG 0.523486 1.2:-72678845 MS.gene54756:CDS
AGGCCTTTGCTTTGTATCGG+TGG 0.524480 1.2:-72678163 MS.gene54756:CDS
GGCCATTGCAAATAATAGAA+AGG 0.524636 1.2:-72677219 MS.gene54756:CDS
ATTAGATGAGGCTGATCGAT+TGG 0.526285 1.2:-72678014 MS.gene54756:CDS
GGATATCCAGCTTCCTTCAA+AGG 0.531513 1.2:+72678193 None:intergenic
GGCTGAGCTGGTTGATCCAA+TGG 0.532926 1.2:-72677351 MS.gene54756:CDS
CACAGGCATAAGTGGTGTCA+AGG 0.533189 1.2:-72677312 MS.gene54756:CDS
ACAGCTTGAGATTGTCAAGA+AGG 0.534600 1.2:-72678125 MS.gene54756:CDS
GTCCGTCAAGGGAATTGGCT+AGG 0.535331 1.2:-72678249 MS.gene54756:CDS
TTGTCAATGTGGGACGTGCA+GGG 0.535671 1.2:-72677856 MS.gene54756:CDS
CAATGTGGGACGTGCAGGGG+CGG 0.538248 1.2:-72677852 MS.gene54756:CDS
AAATTGAAAATTATGTCCAT+AGG 0.540038 1.2:-72677505 MS.gene54756:CDS
TTTGAAGATGTTGAAAACCA+AGG 0.541708 1.2:-72678464 MS.gene54756:CDS
AGAAGATTCTACAACGCAAA+GGG 0.543952 1.2:-72678864 MS.gene54756:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 1.2:-72677491 MS.gene54756:CDS
CGGTTCGTGAATTAGCCAAA+GGG 0.544464 1.2:-72678657 MS.gene54756:CDS
AGGGCTGTGCATATTGTGGC+GGG 0.545255 1.2:-72677292 MS.gene54756:CDS
AACATATCCTTCAACCTCCC+AGG 0.545633 1.2:+72678079 None:intergenic
TATAAGAAGGATGTCGAAGA+AGG 0.546105 1.2:-72678587 MS.gene54756:CDS
CCCTGCACCTGAATAGGCGT+TGG 0.547462 1.2:+72678430 None:intergenic
TAGAATCTTCTGAGCTTCCA+TGG 0.548818 1.2:+72678876 None:intergenic
TCTGATTATTTGTCCGTCAA+GGG 0.548890 1.2:-72678260 MS.gene54756:CDS
ACAGATTGTTCAACAAGAGA+AGG 0.551879 1.2:-72678719 MS.gene54756:CDS
AGCCTCCTTTGCATATAAGA+AGG 0.556618 1.2:-72678600 MS.gene54756:CDS
TTGATCACTTCAAAGCTCAA+AGG 0.557864 1.2:-72677955 MS.gene54756:CDS
GACATCCTTCTTATATGCAA+AGG 0.558548 1.2:+72678595 None:intergenic
TGGGAGGTTGAAGGATATGT+TGG 0.560706 1.2:-72678077 MS.gene54756:CDS
GGCTTCCACCCAGTAGGCAA+AGG 0.565662 1.2:+72678619 None:intergenic
GGACAAATAATCAGACCAAA+CGG 0.567574 1.2:+72678268 None:intergenic
GGCTGGAAAGAAAGATGTGT+TGG 0.568095 1.2:-72677603 MS.gene54756:CDS
TGGCGCGACGCTTGGCCACA+GGG 0.572510 1.2:+72678896 None:intergenic
AAAACCTATTATTGTCAATG+TGG 0.574587 1.2:-72677867 MS.gene54756:CDS
GTGATTTGATTCAGAAACAG+TGG 0.579699 1.2:-72678561 MS.gene54756:CDS
GTTCTAATTTAGGACAATCA+CGG 0.582056 1.2:+72677255 None:intergenic
CAGCTTGAGATTGTCAAGAA+GGG 0.585138 1.2:-72678124 MS.gene54756:CDS
CAACCAGCTCAGCCAAAACA+GGG 0.585303 1.2:+72677360 None:intergenic
AAGGGCTGTGCATATTGTGG+CGG 0.588782 1.2:-72677293 MS.gene54756:CDS
GATGCCTTAACAAGTAGACT+TGG 0.589716 1.2:+72678781 None:intergenic
TTGGATCTGGAGGTTACCGA+GGG 0.589965 1.2:-72677190 MS.gene54756:CDS
ATCATCTTCTTCCATTGCGG+CGG 0.590603 1.2:+72678834 None:intergenic
TGTCAATGTGGGACGTGCAG+GGG 0.592163 1.2:-72677855 MS.gene54756:CDS
AAACCTATTATTGTCAATGT+GGG 0.592275 1.2:-72677866 MS.gene54756:CDS
GTCAAGGGCTGTGCATATTG+TGG 0.594696 1.2:-72677296 MS.gene54756:CDS
GAAGATAATGAAGAAATCAC+AGG 0.595506 1.2:-72677329 MS.gene54756:CDS
CGAATCATCTTCTTCCATTG+CGG 0.596138 1.2:+72678831 None:intergenic
TAGGTATTTAACATTAGATG+AGG 0.597304 1.2:-72678026 MS.gene54756:CDS
ACAGGCATAAGTGGTGTCAA+GGG 0.600892 1.2:-72677311 MS.gene54756:CDS
AGACCAAACGGACCTTCCCC+AGG 0.602098 1.2:+72678280 None:intergenic
TCCTTAAAATTCTTAATCGG+GGG 0.602509 1.2:+72678508 None:intergenic
ATTGGACGTACCGGAAGATG+TGG 0.605046 1.2:-72677482 MS.gene54756:CDS
ACAGCTTTCAAATTTCCCCT+CGG 0.605453 1.2:+72677174 None:intergenic
AAATGAATCTTGATAACTGT+AGG 0.605954 1.2:-72678045 MS.gene54756:CDS
CAGAAGATTCTACAACGCAA+AGG 0.606512 1.2:-72678865 MS.gene54756:CDS
TCGGTTCGTGAATTAGCCAA+AGG 0.607239 1.2:-72678658 MS.gene54756:CDS
TATGATGCCGATTGTTCCTG+GGG 0.607823 1.2:-72678296 MS.gene54756:CDS
CGTGGCTATTCATGGAGGCA+AGG 0.609440 1.2:-72677663 MS.gene54756:CDS
TTTGGATCTGGAGGTTACCG+AGG 0.611360 1.2:-72677191 MS.gene54756:CDS
ATCCTTCTTATATGCAAAGG+AGG 0.611900 1.2:+72678598 None:intergenic
GTATCTTCTCTTGAAAGGAG+TGG 0.613245 1.2:-72677690 MS.gene54756:CDS
TGATTCGGAGAAACTTAAAG+TGG 0.617162 1.2:-72678815 MS.gene54756:CDS
ACCAGCTCAGCCAAAACAGG+GGG 0.618612 1.2:+72677362 None:intergenic
CCAACGCCTATTCAGGTGCA+GGG 0.626028 1.2:-72678430 MS.gene54756:CDS
GATTATGATGGCAATGCAGG+AGG 0.626866 1.2:-72678323 MS.gene54756:CDS
CTTGCCTCCATGAATAGCCA+CGG 0.627088 1.2:+72677664 None:intergenic
AAATCTTGATGTTATTCAGG+AGG 0.630055 1.2:-72677828 MS.gene54756:CDS
GGTAGAGTATGTCAAGCAAG+AGG 0.633475 1.2:-72677807 MS.gene54756:CDS
ATTAGAACATCAGAAGAGTG+TGG 0.644869 1.2:-72677240 MS.gene54756:CDS
TAGTTGTTGCTACTCCTGGG+AGG 0.648311 1.2:-72678093 MS.gene54756:CDS
GGATAAGAAAACCCTTATGT+CGG 0.648731 1.2:-72678677 MS.gene54756:CDS
TCACAAAATATAAGAACAGG+GGG 0.651713 1.2:+72677743 None:intergenic
TCTCACAAAATATAAGAACA+GGG 0.655996 1.2:+72677741 None:intergenic
CTGAGCCTTTGCCTACTGGG+TGG 0.663961 1.2:-72678624 MS.gene54756:CDS
TGAAGATGTTGAAAACCAAG+GGG 0.665813 1.2:-72678462 MS.gene54756:CDS
AAAGGAGGCTTCCACCCAGT+AGG 0.671260 1.2:+72678613 None:intergenic
CTCACAAAATATAAGAACAG+GGG 0.671503 1.2:+72677742 None:intergenic
CTTGAAAGGAGTGGAAGCCG+TGG 0.671745 1.2:-72677681 MS.gene54756:CDS
ATTCCACCGATACAAAGCAA+AGG 0.681232 1.2:+72678160 None:intergenic
AACCAGCTCAGCCAAAACAG+GGG 0.687019 1.2:+72677361 None:intergenic
GAAGCCGTGGCTATTCATGG+AGG 0.745575 1.2:-72677668 MS.gene54756:CDS
CCAGCTCAGCCAAAACAGGG+GGG 0.756991 1.2:+72677363 None:intergenic
TTATGAGGAGTATATCCCTG+TGG 0.764837 1.2:-72678911 MS.gene54756:CDS
TGGATCTGGAGGTTACCGAG+GGG 0.774006 1.2:-72677189 MS.gene54756:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCCTTAAAATTCTTAAT+CGG + chr1.2:72677607-72677626 None:intergenic 15.0%
!!! AATAATAGAAAGGATTATTT+TGG - chr1.2:72678900-72678919 MS.gene54756:CDS 15.0%
!! AAATTGAAAATTATGTCCAT+AGG - chr1.2:72678604-72678623 MS.gene54756:CDS 20.0%
!! TATCCTTAAAATTCTTAATC+GGG + chr1.2:72677606-72677625 None:intergenic 20.0%
!!! TCTTATATTTTGTGAGAATA+AGG - chr1.2:72678374-72678393 MS.gene54756:CDS 20.0%
!!! TTAAGAATTTTAAGGATATG+AGG - chr1.2:72677608-72677627 MS.gene54756:CDS 20.0%
! AAAACCTATTATTGTCAATG+TGG - chr1.2:72678242-72678261 MS.gene54756:CDS 25.0%
! AAACCTATTATTGTCAATGT+GGG - chr1.2:72678243-72678262 MS.gene54756:CDS 25.0%
! ATCCTTAAAATTCTTAATCG+GGG + chr1.2:72677605-72677624 None:intergenic 25.0%
! ATCCTTTCTATTATTTGCAA+TGG + chr1.2:72678895-72678914 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG + chr1.2:72678777-72678796 None:intergenic 25.0%
! TAGGTATTTAACATTAGATG+AGG - chr1.2:72678083-72678102 MS.gene54756:CDS 25.0%
! TCTCACAAAATATAAGAACA+GGG + chr1.2:72678371-72678390 None:intergenic 25.0%
! TTCTCACAAAATATAAGAAC+AGG + chr1.2:72678372-72678391 None:intergenic 25.0%
!! AAATGAATCTTGATAACTGT+AGG - chr1.2:72678064-72678083 MS.gene54756:CDS 25.0%
!! ACATAATTTTCAATTTCAGC+TGG + chr1.2:72678600-72678619 None:intergenic 25.0%
!! AGAATTTTTGTTACCTTTGA+AGG - chr1.2:72677903-72677922 MS.gene54756:CDS 25.0%
!! ATCAAGATTCATTTTCTTCT+TGG + chr1.2:72678058-72678077 None:intergenic 25.0%
!! GTTTTCAACATCTTCAAAAT+CGG + chr1.2:72677643-72677662 None:intergenic 25.0%
!!! TATGATTGGAATTGCTTTTA+CGG - chr1.2:72677729-72677748 MS.gene54756:CDS 25.0%
AAATCTTGATGTTATTCAGG+AGG - chr1.2:72678281-72678300 MS.gene54756:CDS 30.0%
CAGTGGCATATTATTGTTAA+TGG - chr1.2:72677565-72677584 MS.gene54756:CDS 30.0%
CTCACAAAATATAAGAACAG+GGG + chr1.2:72678370-72678389 None:intergenic 30.0%
CTCTTCTGATGTTCTAATTT+AGG + chr1.2:72678867-72678886 None:intergenic 30.0%
GAAAATTATGTCCATAGGAT+TGG - chr1.2:72678609-72678628 MS.gene54756:CDS 30.0%
GAAGATAATGAAGAAATCAC+AGG - chr1.2:72678780-72678799 MS.gene54756:CDS 30.0%
TCACAAAATATAAGAACAGG+GGG + chr1.2:72678369-72678388 None:intergenic 30.0%
TCCTTAAAATTCTTAATCGG+GGG + chr1.2:72677604-72677623 None:intergenic 30.0%
TTGAAGATGTTGAAAACCAA+GGG - chr1.2:72677646-72677665 MS.gene54756:CDS 30.0%
TTTGAAGATGTTGAAAACCA+AGG - chr1.2:72677645-72677664 MS.gene54756:CDS 30.0%
! GTATGCCATTTCATCATTTA+AGG - chr1.2:72678485-72678504 MS.gene54756:CDS 30.0%
! GTTCTAATTTAGGACAATCA+CGG + chr1.2:72678857-72678876 None:intergenic 30.0%
! TTGATGACATGTTGAATATC+AGG + chr1.2:72678567-72678586 None:intergenic 30.0%
!! ATGATTGGAATTGCTTTTAC+GGG - chr1.2:72677730-72677749 MS.gene54756:CDS 30.0%
!! TTTTAAGGATATGAGGTTTC+CGG - chr1.2:72677615-72677634 MS.gene54756:CDS 30.0%
!!! AGAAAGGATTATTTTGGATC+TGG - chr1.2:72678906-72678925 MS.gene54756:CDS 30.0%
!!! TCTAGCAAAGTTCTGAATTT+TGG + chr1.2:72678211-72678230 None:intergenic 30.0%
AACATCTTCAAAATCGGATC+CGG + chr1.2:72677637-72677656 None:intergenic 35.0%
AATGATTATGATGGCAATGC+AGG - chr1.2:72677783-72677802 MS.gene54756:CDS 35.0%
ACAGATTGTTCAACAAGAGA+AGG - chr1.2:72677390-72677409 MS.gene54756:CDS 35.0%
AGAAGATTCTACAACGCAAA+GGG - chr1.2:72677245-72677264 MS.gene54756:CDS 35.0%
ATATAGTTGTTGCTACTCCT+GGG - chr1.2:72678013-72678032 MS.gene54756:CDS 35.0%
ATCCTTCTTATATGCAAAGG+AGG + chr1.2:72677514-72677533 None:intergenic 35.0%
ATTAGAACATCAGAAGAGTG+TGG - chr1.2:72678869-72678888 MS.gene54756:CDS 35.0%
CATGAGTATCTTCTCTTGAA+AGG - chr1.2:72678414-72678433 MS.gene54756:CDS 35.0%
CTCAGTATAAGTAATCCCTT+TGG + chr1.2:72677470-72677489 None:intergenic 35.0%
GACATCCTTCTTATATGCAA+AGG + chr1.2:72677517-72677536 None:intergenic 35.0%
GGAAGAAGAAGATGATTATG+AGG - chr1.2:72677183-72677202 MS.gene54756:CDS 35.0%
GGACAAATAATCAGACCAAA+CGG + chr1.2:72677844-72677863 None:intergenic 35.0%
GGAGATGATTGAGAATTTGT+CGG - chr1.2:72677411-72677430 MS.gene54756:CDS 35.0%
GGATAAGAAAACCCTTATGT+CGG - chr1.2:72677432-72677451 MS.gene54756:CDS 35.0%
GGCAAATCTTGATGTTATTC+AGG - chr1.2:72678278-72678297 MS.gene54756:CDS 35.0%
GGCCATTGCAAATAATAGAA+AGG - chr1.2:72678890-72678909 MS.gene54756:CDS 35.0%
GTGATTTGATTCAGAAACAG+TGG - chr1.2:72677548-72677567 MS.gene54756:CDS 35.0%
TAATTCACGAACCGACATAA+GGG + chr1.2:72677446-72677465 None:intergenic 35.0%
TATAAGAAGGATGTCGAAGA+AGG - chr1.2:72677522-72677541 MS.gene54756:CDS 35.0%
TCCAGCCTTAAATGATGAAA+TGG + chr1.2:72678493-72678512 None:intergenic 35.0%
TCTGATTATTTGTCCGTCAA+GGG - chr1.2:72677849-72677868 MS.gene54756:CDS 35.0%
TGAAGATGTTGAAAACCAAG+GGG - chr1.2:72677647-72677666 MS.gene54756:CDS 35.0%
TGCATTGCCATCATAATCAT+TGG + chr1.2:72677784-72677803 None:intergenic 35.0%
TGTGCTTCCAATGATTATGA+TGG - chr1.2:72677774-72677793 MS.gene54756:CDS 35.0%
TTAAAATTCTTAATCGGGGG+CGG + chr1.2:72677601-72677620 None:intergenic 35.0%
TTGATCACTTCAAAGCTCAA+AGG - chr1.2:72678154-72678173 MS.gene54756:CDS 35.0%
TTGGCATAGTAGCAGAAAAT+AGG + chr1.2:72678188-72678207 None:intergenic 35.0%
! TAAGCCAAGTCTACTTGTTA+AGG - chr1.2:72677324-72677343 MS.gene54756:CDS 35.0%
! TCTGTTTAGCTTCTTGCAAA+AGG + chr1.2:72678722-72678741 None:intergenic 35.0%
! TGATTCGGAGAAACTTAAAG+TGG - chr1.2:72677294-72677313 MS.gene54756:CDS 35.0%
! TTTTGCAAGAAGCTAAACAG+AGG - chr1.2:72678721-72678740 MS.gene54756:CDS 35.0%
!! GTCTTCCGGTTATTTTATCT+GGG - chr1.2:72677701-72677720 MS.gene54756:CDS 35.0%
!!! AAGGATTATTTTGGATCTGG+AGG - chr1.2:72678909-72678928 MS.gene54756:CDS 35.0%
!!! GCAAAGTTCTGAATTTTGGT+TGG + chr1.2:72678207-72678226 None:intergenic 35.0%
ACAGCTTGAGATTGTCAAGA+AGG - chr1.2:72677984-72678003 MS.gene54756:CDS 40.0%
AGCCTCCTTTGCATATAAGA+AGG - chr1.2:72677509-72677528 MS.gene54756:CDS 40.0%
ATTAGATGAGGCTGATCGAT+TGG - chr1.2:72678095-72678114 MS.gene54756:CDS 40.0%
ATTCCACCGATACAAAGCAA+AGG + chr1.2:72677952-72677971 None:intergenic 40.0%
CAAAATATAAGAACAGGGGG+TGG + chr1.2:72678366-72678385 None:intergenic 40.0%
CAAGCAATGTTGTCTCACTT+TGG + chr1.2:72678689-72678708 None:intergenic 40.0%
CAGAAGATTCTACAACGCAA+AGG - chr1.2:72677244-72677263 MS.gene54756:CDS 40.0%
CAGCTTGAGATTGTCAAGAA+GGG - chr1.2:72677985-72678004 MS.gene54756:CDS 40.0%
CATATAGTTGTTGCTACTCC+TGG - chr1.2:72678012-72678031 MS.gene54756:CDS 40.0%
CGAATCATCTTCTTCCATTG+CGG + chr1.2:72677281-72677300 None:intergenic 40.0%
CGCAATGGAAGAAGATGATT+CGG - chr1.2:72677279-72677298 MS.gene54756:CDS 40.0%
CGTCCCACATTGACAATAAT+AGG + chr1.2:72678249-72678268 None:intergenic 40.0%
CTAATTCACGAACCGACATA+AGG + chr1.2:72677447-72677466 None:intergenic 40.0%
GAAGAAATCACAGGCATAAG+TGG - chr1.2:72678789-72678808 MS.gene54756:CDS 40.0%
GATGCCTTAACAAGTAGACT+TGG + chr1.2:72677331-72677350 None:intergenic 40.0%
GCAACTGATGTTGCATCTAA+AGG - chr1.2:72678531-72678550 MS.gene54756:CDS 40.0%
GTATCTTCTCTTGAAAGGAG+TGG - chr1.2:72678419-72678438 MS.gene54756:CDS 40.0%
GTCTGATTATTTGTCCGTCA+AGG - chr1.2:72677848-72677867 MS.gene54756:CDS 40.0%
TAGAATCTTCTGAGCTTCCA+TGG + chr1.2:72677236-72677255 None:intergenic 40.0%
TATTTGTCCGTCAAGGGAAT+TGG - chr1.2:72677855-72677874 MS.gene54756:CDS 40.0%
TCCCTCCCAGATAAAATAAC+CGG + chr1.2:72677709-72677728 None:intergenic 40.0%
TTATCTGGGAGGGATATGAT+TGG - chr1.2:72677715-72677734 MS.gene54756:CDS 40.0%
TTTGAAGGAAGCTGGATATC+CGG - chr1.2:72677918-72677937 MS.gene54756:CDS 40.0%
! ATTATGATGCCGATTGTTCC+TGG - chr1.2:72677811-72677830 MS.gene54756:CDS 40.0%
! GCCATTTCATCATTTAAGGC+TGG - chr1.2:72678489-72678508 MS.gene54756:CDS 40.0%
! GCCCCCGATTAAGAATTTTA+AGG - chr1.2:72677600-72677619 MS.gene54756:CDS 40.0%
! TTATGAGGAGTATATCCCTG+TGG - chr1.2:72677198-72677217 MS.gene54756:CDS 40.0%
! TTATGATGCCGATTGTTCCT+GGG - chr1.2:72677812-72677831 MS.gene54756:CDS 40.0%
! TTGTTACCTTTGAAGGAAGC+TGG - chr1.2:72677910-72677929 MS.gene54756:CDS 40.0%
!! GAACTTTGCTAGAAGTGCTT+TGG - chr1.2:72678218-72678237 MS.gene54756:CDS 40.0%
!! GGTCTTCCGGTTATTTTATC+TGG - chr1.2:72677700-72677719 MS.gene54756:CDS 40.0%
!! TACGGGTTCTGGAAAAACTT+TGG - chr1.2:72677747-72677766 MS.gene54756:CDS 40.0%
!! TCCGGTTATTTTATCTGGGA+GGG - chr1.2:72677705-72677724 MS.gene54756:CDS 40.0%
!! TTCCGGTTATTTTATCTGGG+AGG - chr1.2:72677704-72677723 MS.gene54756:CDS 40.0%
AACATATCCTTCAACCTCCC+AGG + chr1.2:72678033-72678052 None:intergenic 45.0%
ATACTGAGCCTTTGCCTACT+GGG - chr1.2:72677482-72677501 MS.gene54756:CDS 45.0%
ATCATCTTCTTCCATTGCGG+CGG + chr1.2:72677278-72677297 None:intergenic 45.0%
CGGTTCGTGAATTAGCCAAA+GGG - chr1.2:72677452-72677471 MS.gene54756:CDS 45.0%
CTCAGGCCTTTGCTTTGTAT+CGG - chr1.2:72677943-72677962 MS.gene54756:CDS 45.0%
GATTATGATGGCAATGCAGG+AGG - chr1.2:72677786-72677805 MS.gene54756:CDS 45.0%
GGATATCCAGCTTCCTTCAA+AGG + chr1.2:72677919-72677938 None:intergenic 45.0%
GGCTGGAAAGAAAGATGTGT+TGG - chr1.2:72678506-72678525 MS.gene54756:CDS 45.0%
GGTAGAGTATGTCAAGCAAG+AGG - chr1.2:72678302-72678321 MS.gene54756:CDS 45.0%
TATACTGAGCCTTTGCCTAC+TGG - chr1.2:72677481-72677500 MS.gene54756:CDS 45.0%
TATTCATGGAGGCAAGGATC+AGG - chr1.2:72678452-72678471 MS.gene54756:CDS 45.0%
TGGGAGGTTGAAGGATATGT+TGG - chr1.2:72678032-72678051 MS.gene54756:CDS 45.0%
TGTTCTGTGACACTGATCTC+AGG + chr1.2:72677373-72677392 None:intergenic 45.0%
! ACAGGCATAAGTGGTGTCAA+GGG - chr1.2:72678798-72678817 MS.gene54756:CDS 45.0%
! ACCAGTTTTGCCACATCTTC+CGG + chr1.2:72678640-72678659 None:intergenic 45.0%
! GCTGATCGATTGGTCGATTT+GGG - chr1.2:72678105-72678124 MS.gene54756:CDS 45.0%
! TATGATGCCGATTGTTCCTG+GGG - chr1.2:72677813-72677832 MS.gene54756:CDS 45.0%
! TCGGTTCGTGAATTAGCCAA+AGG - chr1.2:72677451-72677470 MS.gene54756:CDS 45.0%
!! GGAATTGCTTTTACGGGTTC+TGG - chr1.2:72677736-72677755 MS.gene54756:CDS 45.0%
!!! GAGTTTTCTGAAGGCACTCA+AGG + chr1.2:72678344-72678363 None:intergenic 45.0%
!!! TTTTCTGAAGGCACTCAAGG+AGG + chr1.2:72678341-72678360 None:intergenic 45.0%
AACCAGCTCAGCCAAAACAG+GGG + chr1.2:72678751-72678770 None:intergenic 50.0%
AAGGGCTGTGCATATTGTGG+CGG - chr1.2:72678816-72678835 MS.gene54756:CDS 50.0%
ACCGGAAGATGTGGCAAAAC+TGG - chr1.2:72678636-72678655 MS.gene54756:CDS 50.0%
AGGCCTTTGCTTTGTATCGG+TGG - chr1.2:72677946-72677965 MS.gene54756:CDS 50.0%
ATTGGACGTACCGGAAGATG+TGG - chr1.2:72678627-72678646 MS.gene54756:CDS 50.0%
ATTGTCAATGTGGGACGTGC+AGG - chr1.2:72678252-72678271 MS.gene54756:CDS 50.0%
CAACCAGCTCAGCCAAAACA+GGG + chr1.2:72678752-72678771 None:intergenic 50.0%
CTTGCCTCCATGAATAGCCA+CGG + chr1.2:72678448-72678467 None:intergenic 50.0%
GTCAAGGGCTGTGCATATTG+TGG - chr1.2:72678813-72678832 MS.gene54756:CDS 50.0%
GTCCATAGGATTGGACGTAC+CGG - chr1.2:72678618-72678637 MS.gene54756:CDS 50.0%
TAGTTGTTGCTACTCCTGGG+AGG - chr1.2:72678016-72678035 MS.gene54756:CDS 50.0%
TATTCAGGTGCAGGGTCTTC+CGG - chr1.2:72677687-72677706 MS.gene54756:CDS 50.0%
TCAACCAGCTCAGCCAAAAC+AGG + chr1.2:72678753-72678772 None:intergenic 50.0%
TGCCTAGCCAATTCCCTTGA+CGG + chr1.2:72677865-72677884 None:intergenic 50.0%
TTCCGGTACGTCCAATCCTA+TGG + chr1.2:72678623-72678642 None:intergenic 50.0%
TTGGATCTGGAGGTTACCGA+GGG - chr1.2:72678919-72678938 MS.gene54756:CDS 50.0%
TTGTCAATGTGGGACGTGCA+GGG - chr1.2:72678253-72678272 MS.gene54756:CDS 50.0%
TTTGGATCTGGAGGTTACCG+AGG - chr1.2:72678918-72678937 MS.gene54756:CDS 50.0%
! CACAGGCATAAGTGGTGTCA+AGG - chr1.2:72678797-72678816 MS.gene54756:CDS 50.0%
! GGCTGATCGATTGGTCGATT+TGG - chr1.2:72678104-72678123 MS.gene54756:CDS 50.0%
AAAGGAGGCTTCCACCCAGT+AGG + chr1.2:72677499-72677518 None:intergenic 55.0%
AAGCTGGATATCCGGAGCTC+AGG - chr1.2:72677926-72677945 MS.gene54756:CDS 55.0%
ACCAGCTCAGCCAAAACAGG+GGG + chr1.2:72678750-72678769 None:intergenic 55.0%
AGGGCTGTGCATATTGTGGC+GGG - chr1.2:72678817-72678836 MS.gene54756:CDS 55.0%
CAAAGCAAAGGCCTGAGCTC+CGG + chr1.2:72677940-72677959 None:intergenic 55.0%
CCAACGCCTATTCAGGTGCA+GGG - chr1.2:72677679-72677698 MS.gene54756:CDS 55.0%
CGTGGCTATTCATGGAGGCA+AGG - chr1.2:72678446-72678465 MS.gene54756:CDS 55.0%
CTTGAAAGGAGTGGAAGCCG+TGG - chr1.2:72678428-72678447 MS.gene54756:CDS 55.0%
GAAGCCGTGGCTATTCATGG+AGG - chr1.2:72678441-72678460 MS.gene54756:CDS 55.0%
GGAAGACCCTGCACCTGAAT+AGG + chr1.2:72677688-72677707 None:intergenic 55.0%
GGACCTTCCCCAGGAACAAT+CGG + chr1.2:72677823-72677842 None:intergenic 55.0%
GGCTGAGCTGGTTGATCCAA+TGG - chr1.2:72678758-72678777 MS.gene54756:CDS 55.0%
GTCCGTCAAGGGAATTGGCT+AGG - chr1.2:72677860-72677879 MS.gene54756:CDS 55.0%
GTGGAAGCCGTGGCTATTCA+TGG - chr1.2:72678438-72678457 MS.gene54756:CDS 55.0%
TGCTACTCCTGGGAGGTTGA+AGG - chr1.2:72678023-72678042 MS.gene54756:CDS 55.0%
TGGATCTGGAGGTTACCGAG+GGG - chr1.2:72678920-72678939 MS.gene54756:CDS 55.0%
TGTCAATGTGGGACGTGCAG+GGG - chr1.2:72678254-72678273 MS.gene54756:CDS 55.0%
TGTGCAGCCAACGCCTATTC+AGG - chr1.2:72677672-72677691 MS.gene54756:CDS 55.0%
! ACAGAGGATCCCCCCTGTTT+TGG - chr1.2:72678737-72678756 MS.gene54756:CDS 55.0%
! ATGCCGATTGTTCCTGGGGA+AGG - chr1.2:72677817-72677836 MS.gene54756:CDS 55.0%
! CAGGGGGTGGAGTTTTCTGA+AGG + chr1.2:72678353-72678372 None:intergenic 55.0%
!! TGTGCATATTGTGGCGGGCT+TGG - chr1.2:72678822-72678841 MS.gene54756:CDS 55.0%
AGACCAAACGGACCTTCCCC+AGG + chr1.2:72677832-72677851 None:intergenic 60.0%
AGGGAAAGCAACCGCCGCAA+TGG - chr1.2:72677264-72677283 MS.gene54756:CDS 60.0%
CCAGCTCAGCCAAAACAGGG+GGG + chr1.2:72678749-72678768 None:intergenic 60.0%
CCCTGCACCTGAATAGGCGT+TGG + chr1.2:72677682-72677701 None:intergenic 60.0%
CTGAGCCTTTGCCTACTGGG+TGG - chr1.2:72677485-72677504 MS.gene54756:CDS 60.0%
GCCAACGCCTATTCAGGTGC+AGG - chr1.2:72677678-72677697 MS.gene54756:CDS 60.0%
GGCTTCCACCCAGTAGGCAA+AGG + chr1.2:72677493-72677512 None:intergenic 60.0%
GTTCCTGGGGAAGGTCCGTT+TGG - chr1.2:72677826-72677845 MS.gene54756:CDS 60.0%
! CGTTGGCTGCACAATCCCCT+TGG + chr1.2:72677665-72677684 None:intergenic 60.0%
AGCTTCCATGGCGCGACGCT+TGG + chr1.2:72677224-72677243 None:intergenic 65.0%
CAATGTGGGACGTGCAGGGG+CGG - chr1.2:72678257-72678276 MS.gene54756:CDS 65.0%
!!! CCCCCCTGTTTTGGCTGAGC+TGG - chr1.2:72678746-72678765 MS.gene54756:CDS 65.0%
ATGGCGCGACGCTTGGCCAC+AGG + chr1.2:72677217-72677236 None:intergenic 70.0%
TGGCGCGACGCTTGGCCACA+GGG + chr1.2:72677216-72677235 None:intergenic 70.0%
! TGTGGCCAAGCGTCGCGCCA+TGG - chr1.2:72677216-72677235 MS.gene54756:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72677181 72678950 72677181 ID=MS.gene54756
chr1.2 mRNA 72677181 72678950 72677181 ID=MS.gene54756.t1;Parent=MS.gene54756
chr1.2 exon 72677181 72678950 72677181 ID=MS.gene54756.t1.exon1;Parent=MS.gene54756.t1
chr1.2 CDS 72677181 72678950 72677181 ID=cds.MS.gene54756.t1;Parent=MS.gene54756.t1
Gene Sequence

>MS.gene54756

ATGGAAGAAGAAGATGATTATGAGGAGTATATCCCTGTGGCCAAGCGTCGCGCCATGGAAGCTCAGAAGATTCTACAACGCAAAGGGAAAGCAACCGCCGCAATGGAAGAAGATGATTCGGAGAAACTTAAAGTGGTTGAAACTAAGCCAAGTCTACTTGTTAAGGCATCACAGTTGAAGAAAGATCAACCTGAGATCAGTGTCACAGAACAGATTGTTCAACAAGAGAAGGAGATGATTGAGAATTTGTCGGATAAGAAAACCCTTATGTCGGTTCGTGAATTAGCCAAAGGGATTACTTATACTGAGCCTTTGCCTACTGGGTGGAAGCCTCCTTTGCATATAAGAAGGATGTCGAAGAAGGATTGTGATTTGATTCAGAAACAGTGGCATATTATTGTTAATGGCGAAGAGATTCCGCCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCGATTTTGAAGATGTTGAAAACCAAGGGGATTGTGCAGCCAACGCCTATTCAGGTGCAGGGTCTTCCGGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTTACGGGTTCTGGAAAAACTTTGGTTTTTGTGCTTCCAATGATTATGATGGCAATGCAGGAGGAGATTATGATGCCGATTGTTCCTGGGGAAGGTCCGTTTGGTCTGATTATTTGTCCGTCAAGGGAATTGGCTAGGCAAACTTATGAAGTCATTGAAGAATTTTTGTTACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATCGATATGAGATCACAGCTTGAGATTGTCAAGAAGGGTGTTCATATAGTTGTTGCTACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGTAGGTATTTAACATTAGATGAGGCTGATCGATTGGTCGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAAACTCTCCTATTTTCTGCTACTATGCCAACCAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCGGCAAATCTTGATGTTATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCGAAAATAGTTTACCTCCTTGAGTGCCTTCAGAAAACTCCACCCCCTGTTCTTATATTTTGTGAGAATAAGGCTGATGTTGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCATTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCTAAAGGTTTAGATTTTCCTGATATTCAACATGTCATCAACTATGATATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCAACAACATTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCTAAACAGAGGATCCCCCCTGTTTTGGCTGAGCTGGTTGATCCAATGGAAGATAATGAAGAAATCACAGGCATAAGTGGTGTCAAGGGCTGTGCATATTGTGGCGGGCTTGGTCATCGTATCCGTGATTGTCCTAAATTAGAACATCAGAAGAGTGTGGCCATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACCGAGGGGAAATTTGA
Protein sequence

>MS.gene54756.t1

MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAMEEDDSEKLKVVETKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI