AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54866

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54866.t1 MTR_2g091130 96.552 638 22 0 1 638 1 638 0.0 1255
MS.gene54866.t1 MTR_2g091135 92.233 618 34 3 1 606 1 616 0.0 1132
MS.gene54866.t1 MTR_2g091135 92.437 595 32 2 1 583 1 594 0.0 1099
MS.gene54866.t1 MTR_4g079650 62.806 449 130 8 136 582 497 910 5.91e-175 523
MS.gene54866.t1 MTR_4g079650 62.806 449 130 8 136 582 497 910 1.56e-174 522
MS.gene54866.t1 MTR_4g079650 66.488 373 117 5 136 506 497 863 1.58e-160 483
MS.gene54866.t1 MTR_4g092900 45.367 313 128 8 265 549 128 425 1.21e-69 235
MS.gene54866.t1 MTR_4g092900 45.367 313 128 8 265 549 128 425 1.50e-69 235
MS.gene54866.t1 MTR_4g092880 40.979 327 116 10 254 549 121 401 9.34e-59 206
MS.gene54866.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 8.89e-46 172
MS.gene54866.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 2.86e-45 172
MS.gene54866.t1 MTR_4g092880 40.602 266 105 9 254 488 121 364 7.53e-44 162
MS.gene54866.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 1.10e-36 145
MS.gene54866.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 2.28e-36 145
MS.gene54866.t1 MTR_2g018270 56.190 105 46 0 300 404 83 187 1.20e-34 138
MS.gene54866.t1 MTR_8g070660 29.268 246 155 4 293 535 90 319 1.02e-28 118
MS.gene54866.t1 MTR_6g033375 31.120 241 137 5 303 535 75 294 1.50e-27 114
MS.gene54866.t1 MTR_8g070660 44.444 108 57 1 293 397 90 197 1.55e-25 107
MS.gene54866.t1 MTR_5g069490 31.466 232 126 4 309 537 111 312 2.05e-21 96.7
MS.gene54866.t1 MTR_2g437920 30.131 229 132 6 311 535 146 350 2.00e-17 85.1
MS.gene54866.t1 MTR_6g045290 28.372 215 123 5 333 537 79 272 2.60e-14 76.3
MS.gene54866.t1 MTR_2g005820 38.298 94 57 1 303 395 202 295 3.47e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54866.t1 AT1G06230 59.657 466 167 8 144 596 272 729 5.35e-163 486
MS.gene54866.t1 AT1G06230 59.657 466 167 8 144 596 272 729 5.35e-163 486
MS.gene54866.t1 AT1G06230 59.657 466 167 8 144 596 272 729 5.35e-163 486
MS.gene54866.t1 AT1G06230 59.657 466 167 8 144 596 272 729 5.35e-163 486
MS.gene54866.t1 AT1G73150 50.316 316 129 6 263 559 86 392 1.48e-84 272
MS.gene54866.t1 AT1G73150 50.316 316 129 6 263 559 86 392 2.85e-84 272
MS.gene54866.t1 AT1G17790 44.762 315 137 7 287 574 122 426 6.29e-72 240
MS.gene54866.t1 AT3G27260 40.486 247 115 6 297 537 177 397 3.60e-43 166
MS.gene54866.t1 AT3G27260 40.486 247 115 6 297 537 177 397 8.62e-43 165
MS.gene54866.t1 AT3G27260 40.486 247 115 6 297 537 177 397 9.80e-43 165
MS.gene54866.t1 AT3G27260 40.323 248 116 6 296 537 127 348 1.04e-42 165
MS.gene54866.t1 AT5G14270 37.066 259 135 5 293 550 134 365 5.60e-42 162
MS.gene54866.t1 AT5G14270 37.066 259 135 5 293 550 134 365 5.60e-42 162
MS.gene54866.t1 AT5G14270 37.066 259 135 5 293 550 134 365 7.08e-42 162
MS.gene54866.t1 AT3G01770 38.559 236 115 5 297 531 130 336 1.04e-39 152
MS.gene54866.t1 AT3G01770 38.559 236 115 5 297 531 130 336 3.21e-39 153
MS.gene54866.t1 AT5G63320 32.121 330 182 10 221 544 95 388 5.09e-36 142
MS.gene54866.t1 AT5G63320 32.121 330 182 10 221 544 95 388 5.09e-36 142
MS.gene54866.t1 AT5G63320 32.915 319 172 10 232 544 106 388 9.19e-36 144
MS.gene54866.t1 AT5G65630 62.000 100 38 0 292 391 165 264 1.01e-33 136
MS.gene54866.t1 AT5G65630 54.717 106 47 1 444 549 374 478 1.27e-27 118
MS.gene54866.t1 AT2G34900 30.522 249 155 3 297 544 1 232 3.43e-32 126
MS.gene54866.t1 AT5G10550 59.000 100 41 0 292 391 170 269 4.33e-32 131
MS.gene54866.t1 AT5G10550 57.292 96 41 0 454 549 378 473 1.76e-26 114
MS.gene54866.t1 AT2G34900 30.522 249 155 3 297 544 111 342 7.31e-32 128
MS.gene54866.t1 AT5G46550 47.107 121 57 2 300 414 73 192 1.95e-28 119
MS.gene54866.t1 AT3G52280 27.755 245 156 5 297 537 95 322 2.53e-24 105
MS.gene54866.t1 AT3G52280 27.686 242 156 4 297 535 112 337 3.22e-24 105

Find 181 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCGTCTGGGTCTGATTC+AGG 0.166031 2.1:-9827014 MS.gene54866:CDS
ACATGAACATCTTGCCCTTT+AGG 0.234304 2.1:+9828072 None:intergenic
ATGAGGTATGGCTTGGATTA+TGG 0.238032 2.1:-9827979 MS.gene54866:CDS
GGAGAAATGGGACATGGATT+TGG 0.255723 2.1:-9828342 MS.gene54866:CDS
CTAACACCATTACACTTAAC+TGG 0.281372 2.1:+9828523 None:intergenic
CGGTGAGGTCGTTGGTGATT+AGG 0.282820 2.1:-9828698 MS.gene54866:CDS
CTCCGCCAGTTGTGAATTCT+AGG 0.296493 2.1:-9828944 MS.gene54866:CDS
CGAGTCAAGCTCAAGGGATT+TGG 0.299517 2.1:+9827850 None:intergenic
GATCGTTATAGGGTTGATAA+TGG 0.315135 2.1:-9828618 MS.gene54866:CDS
GAGAAATGGGACATGGATTT+GGG 0.327055 2.1:-9828341 MS.gene54866:CDS
GAAATTCGAGTCGATAATAA+TGG 0.328180 2.1:-9827226 MS.gene54866:CDS
GTGTGGATGCAGAGACTCTT+TGG 0.328188 2.1:-9827627 MS.gene54866:CDS
AGCAGCTCAAGCAGTGATTC+TGG 0.334206 2.1:-9827184 MS.gene54866:CDS
CAACTATAACTGGTGGTTCT+TGG 0.335527 2.1:+9827403 None:intergenic
TCAACAGTTGGATAGTGTTT+TGG 0.336808 2.1:-9828988 MS.gene54866:CDS
GTTGTTCCTCATACTCATTC+TGG 0.339532 2.1:-9829071 MS.gene54866:CDS
CGCAAGCAAGAATTCCGAAT+TGG 0.349984 2.1:+9828431 None:intergenic
TTCAATTTCATCATCATGTT+GGG 0.352389 2.1:+9827663 None:intergenic
TGAGGTATGGCTTGGATTAT+GGG 0.352869 2.1:-9827978 MS.gene54866:CDS
CCCTTGCACGGGCAAGGATG+GGG 0.358928 2.1:+9827249 None:intergenic
ATGTGTCTGTGGATCGTTAT+AGG 0.361266 2.1:-9828629 MS.gene54866:CDS
GTGTTCCGAGAGAGGCTAAT+AGG 0.362707 2.1:-9828554 MS.gene54866:CDS
AGTGATAGCTCCTCATCGTC+TGG 0.364047 2.1:-9827026 MS.gene54866:CDS
CTCGGGGCATCAACTATAAC+TGG 0.373580 2.1:+9827393 None:intergenic
TCCCCTTGCACGGGCAAGGA+TGG 0.381629 2.1:+9827247 None:intergenic
CATCTCACATCCGATGGACT+TGG 0.390431 2.1:-9828193 MS.gene54866:CDS
GACTTCTTGTTACTCTCTGC+AGG 0.391383 2.1:+9828393 None:intergenic
GAAGCATGGCGTTGGAGAAA+TGG 0.393841 2.1:-9828355 MS.gene54866:CDS
GGTTCCGGAGGATGGGAATT+CGG 0.396211 2.1:-9828967 MS.gene54866:CDS
CCCCTTGCACGGGCAAGGAT+GGG 0.397080 2.1:+9827248 None:intergenic
ATTGTAATTTGACTCTATAA+TGG 0.399524 2.1:+9828008 None:intergenic
AAACCTGCTTGTCTTTCTCT+CGG 0.407774 2.1:+9827375 None:intergenic
AACCTGCTTGTCTTTCTCTC+GGG 0.408916 2.1:+9827376 None:intergenic
GCCTCTTGACATGAGGAATC+TGG 0.411079 2.1:-9827899 MS.gene54866:CDS
AGAGGATAACGTTAATTCCT+TGG 0.411103 2.1:-9829096 MS.gene54866:CDS
CAACGGATGGCTGGGAGGTA+TGG 0.413417 2.1:-9828663 MS.gene54866:CDS
TTATCAGGATCGTTTGCCTT+CGG 0.416620 2.1:+9827799 None:intergenic
ACATCCTCCGCAAACTCCTT+TGG 0.418265 2.1:+9828129 None:intergenic
ACCGCCACCGTCACTGTTGA+TGG 0.421112 2.1:-9829041 MS.gene54866:CDS
GAAGAGAAACAACGGATGGC+TGG 0.423094 2.1:-9828672 MS.gene54866:CDS
GAATAGAACTGGTTCGCCTT+AGG 0.428319 2.1:+9828453 None:intergenic
CTTCAATTTCATCATCATGT+TGG 0.431836 2.1:+9827662 None:intergenic
ATTCCGAATTGGAATAGAAC+TGG 0.439085 2.1:+9828442 None:intergenic
CAGCATTATTCGAGGAAAGA+TGG 0.443395 2.1:-9828032 MS.gene54866:CDS
CCCCATCCTTGCCCGTGCAA+GGG 0.443866 2.1:-9827249 MS.gene54866:CDS
CTAGAAAGACTCCTGCTTTG+CGG 0.445924 2.1:-9827927 MS.gene54866:CDS
GAGGAGATGTGATGATAAGA+AGG 0.445935 2.1:-9828811 MS.gene54866:CDS
GGATAACGGGAATAATGTTT+CGG 0.452791 2.1:-9829012 MS.gene54866:CDS
GATCATTAAGAAACGAAATT+CGG 0.453860 2.1:-9827692 MS.gene54866:CDS
CATCGTCTGGGTCTGATTCA+GGG 0.454571 2.1:-9827013 MS.gene54866:CDS
ATCGTTATAGGGTTGATAAT+GGG 0.456646 2.1:-9828617 MS.gene54866:CDS
CACTCTGAGGTAGCTTCTGC+AGG 0.459504 2.1:-9828576 MS.gene54866:CDS
AAGCATGGCGTTGGAGAAAT+GGG 0.460416 2.1:-9828354 MS.gene54866:CDS
AGAGGCGGTGGCCGCAAAGC+AGG 0.462424 2.1:+9827916 None:intergenic
TAGTCTTGATGTTGTTCAGC+TGG 0.468758 2.1:-9828865 MS.gene54866:CDS
ATTTGTTAGAACCAGCTTTG+AGG 0.470294 2.1:-9828830 MS.gene54866:CDS
TACACGCCAGTTAAGTGTAA+TGG 0.471994 2.1:-9828529 MS.gene54866:CDS
TTGATGGGACGAAGGATAAC+GGG 0.473241 2.1:-9829025 MS.gene54866:CDS
CCATGACATATAATCCTAAA+GGG 0.476230 2.1:-9828086 MS.gene54866:CDS
CCCTTTAGGATTATATGTCA+TGG 0.477104 2.1:+9828086 None:intergenic
AGTCGAGGCTCAGCAAGAAT+TGG 0.481219 2.1:-9828161 MS.gene54866:CDS
AGGAGATGTGATGATAAGAA+GGG 0.481966 2.1:-9828810 MS.gene54866:CDS
CCAACGACCTCACCGTTTCA+AGG 0.483405 2.1:+9828706 None:intergenic
ACGGTCGAAGCAAGAGATGC+GGG 0.484337 2.1:-9828754 MS.gene54866:CDS
GAACCAGTTCTATTCCAATT+CGG 0.484886 2.1:-9828445 MS.gene54866:CDS
GCCATGACATATAATCCTAA+AGG 0.486072 2.1:-9828087 MS.gene54866:CDS
TAATGTTTCGGTTCAACAGT+TGG 0.486868 2.1:-9829000 MS.gene54866:CDS
TGTGGATGCAGAGACTCTTT+GGG 0.487754 2.1:-9827626 MS.gene54866:CDS
GGGATTAAAAGGAAGCTTGA+GGG 0.488906 2.1:-9828732 MS.gene54866:CDS
CCAGTGGATGTTGAACGTCT+TGG 0.491052 2.1:-9828237 MS.gene54866:CDS
CCTTGCACGGGCAAGGATGG+GGG 0.494527 2.1:+9827250 None:intergenic
TCTAGCTTGAATAGCAAGTT+CGG 0.494718 2.1:+9827546 None:intergenic
TGTGTCTGTGGATCGTTATA+GGG 0.499515 2.1:-9828628 MS.gene54866:CDS
TTAAGAATGGACTGGCTTCA+CGG 0.501932 2.1:-9828773 MS.gene54866:CDS
AATTAGTGAAGGTGTTGAGA+AGG 0.503461 2.1:-9828487 MS.gene54866:CDS
TTGGAGAATGGTGTTAAGAA+TGG 0.503549 2.1:-9828786 MS.gene54866:CDS
AATTTCCCCTTGCACGGGCA+AGG 0.506581 2.1:+9827243 None:intergenic
AAATTCGAGTCGATAATAAT+GGG 0.507929 2.1:-9827225 MS.gene54866:CDS
CTTCTGCTGGGCAATTCGCT+CGG 0.507968 2.1:+9827516 None:intergenic
TCATGAGATGAGGTATGGCT+TGG 0.513576 2.1:-9827986 MS.gene54866:CDS
GTCAAGCTCAAGGGATTTGG+AGG 0.514668 2.1:+9827853 None:intergenic
TCCAACCTAGAATTCACAAC+TGG 0.516769 2.1:+9828939 None:intergenic
CATGGAAAGAAGCATGGCGT+TGG 0.520162 2.1:-9828363 MS.gene54866:CDS
CCCATCCTTGCCCGTGCAAG+GGG 0.520316 2.1:-9827248 MS.gene54866:CDS
ATCAACAGTGACGGTGGCGG+TGG 0.521030 2.1:+9829043 None:intergenic
GACTCGAATTTCCCCTTGCA+CGG 0.521051 2.1:+9827237 None:intergenic
GTTGATGGGACGAAGGATAA+CGG 0.523599 2.1:-9829026 MS.gene54866:CDS
GCCAGTTGTGAATTCTAGGT+TGG 0.525168 2.1:-9828940 MS.gene54866:CDS
GTCGAGTTTGAATCGTAGGC+AGG 0.526047 2.1:-9828898 MS.gene54866:CDS
AGCATTATTCGAGGAAAGAT+GGG 0.527838 2.1:-9828031 MS.gene54866:CDS
AGTGTAATGGTGTTAGAGAA+TGG 0.529484 2.1:-9828516 MS.gene54866:CDS
TGATGAAACACAAGCACGGT+TGG 0.531315 2.1:-9828272 MS.gene54866:CDS
TACAATCATGAGATGAGGTA+TGG 0.535160 2.1:-9827991 MS.gene54866:CDS
AAGAGAAACAACGGATGGCT+GGG 0.537737 2.1:-9828671 MS.gene54866:CDS
GCTCAAGGGATTTGGAGGGT+TGG 0.539474 2.1:+9827858 None:intergenic
GATAAGAAGGGGTTGGAGAA+TGG 0.540938 2.1:-9828798 MS.gene54866:CDS
CAAATCACCAAAGGAGTTTG+CGG 0.541456 2.1:-9828136 MS.gene54866:CDS
ACCTGCTTGTCTTTCTCTCG+GGG 0.543462 2.1:+9827377 None:intergenic
GATGAAACACAAGCACGGTT+GGG 0.544423 2.1:-9828271 MS.gene54866:CDS
AGGGCAAGATGTTCATGTAA+TGG 0.545167 2.1:-9828067 MS.gene54866:CDS
CCAAGACGTTCAACATCCAC+TGG 0.547510 2.1:+9828237 None:intergenic
ATTCGTCGAGTTTGAATCGT+AGG 0.549038 2.1:-9828902 MS.gene54866:CDS
TCATCACATCTCCTCAAAGC+TGG 0.550575 2.1:+9828819 None:intergenic
GTCTTTCTAGACAGAGGTGA+AGG 0.552966 2.1:+9827940 None:intergenic
GATGTTGTTCAGCTGGAAGA+TGG 0.557828 2.1:-9828858 MS.gene54866:CDS
TTCCTCATGTCAAGAGGCGG+TGG 0.558440 2.1:+9827904 None:intergenic
ATCTCACATCCGATGGACTT+GGG 0.558638 2.1:-9828192 MS.gene54866:CDS
ACTCGAATTTCCCCTTGCAC+GGG 0.558672 2.1:+9827238 None:intergenic
GCTTGAGGGCGACCTTGAAA+CGG 0.560792 2.1:-9828718 MS.gene54866:CDS
TATAGGGTTGATAATGGGAG+TGG 0.560910 2.1:-9828612 MS.gene54866:CDS
TATTATCATCTCACATCCGA+TGG 0.564977 2.1:-9828199 MS.gene54866:CDS
CGGATGGCTGGGAGGTATGG+TGG 0.565095 2.1:-9828660 MS.gene54866:CDS
GAGATACAGAGATACTCGGA+GGG 0.565135 2.1:-9829152 MS.gene54866:CDS
AAAGTTTGAGCAAATACAAG+AGG 0.565822 2.1:-9827573 MS.gene54866:CDS
GCCCCGAGAGAAAGACAAGC+AGG 0.567318 2.1:-9827378 MS.gene54866:intron
GTAAACCTATTAGCCTCTCT+CGG 0.567513 2.1:+9828549 None:intergenic
CCGCCACCGTCACTGTTGAT+GGG 0.567667 2.1:-9829040 MS.gene54866:CDS
GGAGCCGAATTCCCATCCTC+CGG 0.571712 2.1:+9828963 None:intergenic
ATGTGATGATAAGAAGGGGT+TGG 0.572103 2.1:-9828805 MS.gene54866:CDS
GTAGCGCCAGAATGAGTATG+AGG 0.573179 2.1:+9829065 None:intergenic
ACATGATGATGAAATTGAAG+TGG 0.573976 2.1:-9827659 MS.gene54866:CDS
CGAGCGAATTGCCCAGCAGA+AGG 0.576938 2.1:-9827515 MS.gene54866:intron
GGGGACTGTAGCTGAAGATA+AGG 0.578014 2.1:-9829183 MS.gene54866:CDS
TTGACATGAGGAATCTGGAT+AGG 0.578459 2.1:-9827894 MS.gene54866:CDS
GTGATAGCTCCTCATCGTCT+GGG 0.578733 2.1:-9827025 MS.gene54866:CDS
TTCTGCAGGTGTTCCGAGAG+AGG 0.582364 2.1:-9828562 MS.gene54866:CDS
CCCATCAACAGTGACGGTGG+CGG 0.584798 2.1:+9829040 None:intergenic
CCTTGAAACGGTGAGGTCGT+TGG 0.585920 2.1:-9828706 MS.gene54866:CDS
TGTGAATTCTAGGTTGGACG+TGG 0.587021 2.1:-9828934 MS.gene54866:CDS
AGCTGAACGAGTCAAGCTCA+AGG 0.587721 2.1:+9827843 None:intergenic
TGAAGTGGACATTGATAGTG+TGG 0.589368 2.1:-9827644 MS.gene54866:CDS
AGATGTTCATGTAATGGCGG+AGG 0.593716 2.1:-9828061 MS.gene54866:CDS
GGTGAAGGTGCAGATATAGC+GGG 0.603194 2.1:+9827955 None:intergenic
GAAGGAGAAGAGAACACCTA+AGG 0.603536 2.1:-9828469 MS.gene54866:CDS
AGGTGAAGGTGCAGATATAG+CGG 0.604052 2.1:+9827954 None:intergenic
GATTCTGGCTCTTCATCAAG+TGG 0.609326 2.1:-9827169 MS.gene54866:intron
AACCTAGAATTCACAACTGG+CGG 0.610102 2.1:+9828942 None:intergenic
TAGAGAGATACAGAGATACT+CGG 0.610318 2.1:-9829156 MS.gene54866:CDS
GGCGTTGGAGAAATGGGACA+TGG 0.610803 2.1:-9828348 MS.gene54866:CDS
GGAGCTATCAGCATTATTCG+AGG 0.611908 2.1:-9828040 MS.gene54866:CDS
CACGGTCGAAGCAAGAGATG+CGG 0.611992 2.1:-9828755 MS.gene54866:CDS
TTCACAGTACCCAAGTCCAT+CGG 0.615883 2.1:+9828183 None:intergenic
GGTCGAAGCAAGAGATGCGG+GGG 0.619895 2.1:-9828752 MS.gene54866:CDS
AATGGTCATGGAATTAGTGA+AGG 0.620816 2.1:-9828498 MS.gene54866:CDS
AGTATGAGGAACAACTTCCA+AGG 0.625080 2.1:+9829079 None:intergenic
CAAATTACAATCATGAGATG+AGG 0.627329 2.1:-9827996 MS.gene54866:CDS
GCTGAACGAGTCAAGCTCAA+GGG 0.627872 2.1:+9827844 None:intergenic
TCCAGATTCCTCATGTCAAG+AGG 0.627985 2.1:+9827898 None:intergenic
TTTGAGCAAATACAAGAGGA+AGG 0.629083 2.1:-9827569 MS.gene54866:CDS
TTGGGTGTTTAATACTCCAG+TGG 0.632618 2.1:-9828253 MS.gene54866:CDS
GGCCACCGCCTCTTGACATG+AGG 0.633195 2.1:-9827906 MS.gene54866:CDS
GCAGGAGTCTTTCTAGACAG+AGG 0.633710 2.1:+9827934 None:intergenic
AAATCACATGGAAAGAAGCA+TGG 0.633912 2.1:-9828369 MS.gene54866:CDS
CGGTCGAAGCAAGAGATGCG+GGG 0.634842 2.1:-9828753 MS.gene54866:CDS
ATGGTGTTAGAGAATGGTCA+TGG 0.636665 2.1:-9828510 MS.gene54866:CDS
TGGTGGTTTGAATGTGTCTG+TGG 0.636743 2.1:-9828640 MS.gene54866:CDS
AACAAGAAGTCAAAATCACA+TGG 0.638541 2.1:-9828381 MS.gene54866:CDS
AGCTAAGCACGCTCACTCTG+AGG 0.643578 2.1:-9828589 MS.gene54866:CDS
TTCTTGTTACTCTCTGCAGG+CGG 0.647277 2.1:+9828396 None:intergenic
TCAAGCTCAAGGGATTTGGA+GGG 0.651277 2.1:+9827854 None:intergenic
CGTCCCATCAACAGTGACGG+TGG 0.653161 2.1:+9829037 None:intergenic
CTTCGTCCCATCAACAGTGA+CGG 0.654668 2.1:+9829034 None:intergenic
TGAATCAGACCCAGACGATG+AGG 0.655171 2.1:+9827016 None:intergenic
ATGGCTGGGAGGTATGGTGG+TGG 0.655927 2.1:-9828657 MS.gene54866:CDS
GGGGATTAAAAGGAAGCTTG+AGG 0.665812 2.1:-9828733 MS.gene54866:CDS
GAATGGTGTTAAGAATGGAC+TGG 0.666740 2.1:-9828781 MS.gene54866:CDS
GCAAGATGTTCATGTAATGG+CGG 0.668019 2.1:-9828064 MS.gene54866:CDS
CGTCACTGTTGATGGGACGA+AGG 0.671055 2.1:-9829033 MS.gene54866:CDS
ATCACCAAAGGAGTTTGCGG+AGG 0.671626 2.1:-9828133 MS.gene54866:CDS
AGATTCCTCATGTCAAGAGG+CGG 0.676274 2.1:+9827901 None:intergenic
GATTGAAGAGAAACAACGGA+TGG 0.679746 2.1:-9828676 MS.gene54866:CDS
GGGGCATCAACTATAACTGG+TGG 0.680239 2.1:+9827396 None:intergenic
GAATTGGTACAAATCACCAA+AGG 0.690101 2.1:-9828145 MS.gene54866:CDS
ACTTGGGTACTGTGAAGTCG+AGG 0.692988 2.1:-9828176 MS.gene54866:CDS
AGAAACAACGGATGGCTGGG+AGG 0.697772 2.1:-9828668 MS.gene54866:CDS
AGGGCGACCTTGAAACGGTG+AGG 0.698598 2.1:-9828713 MS.gene54866:CDS
AAGTTGATGAAACACAAGCA+CGG 0.699310 2.1:-9828276 MS.gene54866:CDS
AGAGATACAGAGATACTCGG+AGG 0.700043 2.1:-9829153 MS.gene54866:CDS
TTAGGATTGAAGAGAAACAA+CGG 0.702409 2.1:-9828680 MS.gene54866:CDS
AGATACAGAGATACTCGGAG+GGG 0.714927 2.1:-9829151 MS.gene54866:CDS
GGAGATGTGATGATAAGAAG+GGG 0.717368 2.1:-9828809 MS.gene54866:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTCAAAGTTTCAG+AGG - chr2.1:9827081-9827100 MS.gene54866:intron 20.0%
!! ATTGTAATTTGACTCTATAA+TGG + chr2.1:9828190-9828209 None:intergenic 20.0%
! AAATTCGAGTCGATAATAAT+GGG - chr2.1:9828970-9828989 MS.gene54866:CDS 25.0%
! ACCTTGTATAACCTAAATTA+TGG + chr2.1:9829084-9829103 None:intergenic 25.0%
! CCTTGTATAACCTAAATTAT+GGG + chr2.1:9829083-9829102 None:intergenic 25.0%
! GATCATTAAGAAACGAAATT+CGG - chr2.1:9828503-9828522 MS.gene54866:CDS 25.0%
! TTCAATTTCATCATCATGTT+GGG + chr2.1:9828535-9828554 None:intergenic 25.0%
! TTTGAATAAAAGTAAAAGCC+AGG + chr2.1:9829110-9829129 None:intergenic 25.0%
AAAGTTTGAGCAAATACAAG+AGG - chr2.1:9828622-9828641 MS.gene54866:CDS 30.0%
AACAAGAAGTCAAAATCACA+TGG - chr2.1:9827814-9827833 MS.gene54866:CDS 30.0%
AGATATCTGTCCCATAATTT+AGG - chr2.1:9829070-9829089 MS.gene54866:CDS 30.0%
CAAATTACAATCATGAGATG+AGG - chr2.1:9828199-9828218 MS.gene54866:CDS 30.0%
CCATGACATATAATCCTAAA+GGG - chr2.1:9828109-9828128 MS.gene54866:CDS 30.0%
CTTCAATTTCATCATCATGT+TGG + chr2.1:9828536-9828555 None:intergenic 30.0%
GAAATTCGAGTCGATAATAA+TGG - chr2.1:9828969-9828988 MS.gene54866:CDS 30.0%
TTAATATCCAGTGTCTTCTT+TGG - chr2.1:9828724-9828743 MS.gene54866:CDS 30.0%
TTAGGATTGAAGAGAAACAA+CGG - chr2.1:9827515-9827534 MS.gene54866:intron 30.0%
! ACATGATGATGAAATTGAAG+TGG - chr2.1:9828536-9828555 MS.gene54866:CDS 30.0%
! CCCATAATTTAGGTTATACA+AGG - chr2.1:9829080-9829099 MS.gene54866:CDS 30.0%
! GCTCAAACTTTTCTTATAGT+TGG + chr2.1:9828613-9828632 None:intergenic 30.0%
! TATGTCATGTCTCTTTTATC+AGG + chr2.1:9828414-9828433 None:intergenic 30.0%
!! ATCGTTATAGGGTTGATAAT+GGG - chr2.1:9827578-9827597 MS.gene54866:CDS 30.0%
!!! ACAATAGCATCTAGTTTTTC+AGG + chr2.1:9828480-9828499 None:intergenic 30.0%
AAATCACATGGAAAGAAGCA+TGG - chr2.1:9827826-9827845 MS.gene54866:CDS 35.0%
AATGGTCATGGAATTAGTGA+AGG - chr2.1:9827697-9827716 MS.gene54866:CDS 35.0%
AGAGGATAACGTTAATTCCT+TGG - chr2.1:9827099-9827118 MS.gene54866:intron 35.0%
AGCATTATTCGAGGAAAGAT+GGG - chr2.1:9828164-9828183 MS.gene54866:CDS 35.0%
AGGAGATGTGATGATAAGAA+GGG - chr2.1:9827385-9827404 MS.gene54866:CDS 35.0%
ATTCCGAATTGGAATAGAAC+TGG + chr2.1:9827756-9827775 None:intergenic 35.0%
CAACAATAATAGTCCACAAG+AGG + chr2.1:9828848-9828867 None:intergenic 35.0%
CTAACACCATTACACTTAAC+TGG + chr2.1:9827675-9827694 None:intergenic 35.0%
GAACCAGTTCTATTCCAATT+CGG - chr2.1:9827750-9827769 MS.gene54866:CDS 35.0%
GAATTGGTACAAATCACCAA+AGG - chr2.1:9828050-9828069 MS.gene54866:CDS 35.0%
GCCATGACATATAATCCTAA+AGG - chr2.1:9828108-9828127 MS.gene54866:CDS 35.0%
TAATGTTTCGGTTCAACAGT+TGG - chr2.1:9827195-9827214 MS.gene54866:CDS 35.0%
TACAATCATGAGATGAGGTA+TGG - chr2.1:9828204-9828223 MS.gene54866:CDS 35.0%
TAGAGAGATACAGAGATACT+CGG - chr2.1:9827039-9827058 MS.gene54866:intron 35.0%
TATTATCATCTCACATCCGA+TGG - chr2.1:9827996-9828015 MS.gene54866:CDS 35.0%
TTATTTGCCAAAGAAGACAC+TGG + chr2.1:9828734-9828753 None:intergenic 35.0%
TTTGAGCAAATACAAGAGGA+AGG - chr2.1:9828626-9828645 MS.gene54866:CDS 35.0%
! AGTGTAATGGTGTTAGAGAA+TGG - chr2.1:9827679-9827698 MS.gene54866:CDS 35.0%
! ATTTGTTAGAACCAGCTTTG+AGG - chr2.1:9827365-9827384 MS.gene54866:intron 35.0%
! TCAACAGTTGGATAGTGTTT+TGG - chr2.1:9827207-9827226 MS.gene54866:CDS 35.0%
! TCTAGCTTGAATAGCAAGTT+CGG + chr2.1:9828652-9828671 None:intergenic 35.0%
! TGTCAATTTTACCTTCTGCT+GGG + chr2.1:9828694-9828713 None:intergenic 35.0%
! TTGGAGAATGGTGTTAAGAA+TGG - chr2.1:9827409-9827428 MS.gene54866:intron 35.0%
! TTGTCAATTTTACCTTCTGC+TGG + chr2.1:9828695-9828714 None:intergenic 35.0%
!! AAGTTGATGAAACACAAGCA+CGG - chr2.1:9827919-9827938 MS.gene54866:CDS 35.0%
!! AATTAGTGAAGGTGTTGAGA+AGG - chr2.1:9827708-9827727 MS.gene54866:CDS 35.0%
!! CCCTTTAGGATTATATGTCA+TGG + chr2.1:9828112-9828131 None:intergenic 35.0%
!! GATCGTTATAGGGTTGATAA+TGG - chr2.1:9827577-9827596 MS.gene54866:CDS 35.0%
!! GGATAACGGGAATAATGTTT+CGG - chr2.1:9827183-9827202 MS.gene54866:CDS 35.0%
!!! ATAGCATCTAGTTTTTCAGG+TGG + chr2.1:9828477-9828496 None:intergenic 35.0%
AAACCTGCTTGTCTTTCTCT+CGG + chr2.1:9828823-9828842 None:intergenic 40.0%
AACCTAGAATTCACAACTGG+CGG + chr2.1:9827256-9827275 None:intergenic 40.0%
ACATGAACATCTTGCCCTTT+AGG + chr2.1:9828126-9828145 None:intergenic 40.0%
AGGGCAAGATGTTCATGTAA+TGG - chr2.1:9828128-9828147 MS.gene54866:CDS 40.0%
AGTATGAGGAACAACTTCCA+AGG + chr2.1:9827119-9827138 None:intergenic 40.0%
ATGTGATGATAAGAAGGGGT+TGG - chr2.1:9827390-9827409 MS.gene54866:CDS 40.0%
ATGTGTCTGTGGATCGTTAT+AGG - chr2.1:9827566-9827585 MS.gene54866:CDS 40.0%
ATTCGTCGAGTTTGAATCGT+AGG - chr2.1:9827293-9827312 MS.gene54866:intron 40.0%
CAAATCACCAAAGGAGTTTG+CGG - chr2.1:9828059-9828078 MS.gene54866:CDS 40.0%
CAACTATAACTGGTGGTTCT+TGG + chr2.1:9828795-9828814 None:intergenic 40.0%
CAGCATTATTCGAGGAAAGA+TGG - chr2.1:9828163-9828182 MS.gene54866:CDS 40.0%
GAGAAATGGGACATGGATTT+GGG - chr2.1:9827854-9827873 MS.gene54866:CDS 40.0%
GAGGAGATGTGATGATAAGA+AGG - chr2.1:9827384-9827403 MS.gene54866:CDS 40.0%
GATTGAAGAGAAACAACGGA+TGG - chr2.1:9827519-9827538 MS.gene54866:CDS 40.0%
GCAAGATGTTCATGTAATGG+CGG - chr2.1:9828131-9828150 MS.gene54866:CDS 40.0%
GGAGATGTGATGATAAGAAG+GGG - chr2.1:9827386-9827405 MS.gene54866:CDS 40.0%
GGGATTAAAAGGAAGCTTGA+GGG - chr2.1:9827463-9827482 MS.gene54866:intron 40.0%
GTTGTTCCTCATACTCATTC+TGG - chr2.1:9827124-9827143 MS.gene54866:intron 40.0%
TACACGCCAGTTAAGTGTAA+TGG - chr2.1:9827666-9827685 MS.gene54866:CDS 40.0%
TAGGTTATACAAGGTCAACC+TGG - chr2.1:9829089-9829108 MS.gene54866:CDS 40.0%
TCCAACCTAGAATTCACAAC+TGG + chr2.1:9827259-9827278 None:intergenic 40.0%
TGTGTCTGTGGATCGTTATA+GGG - chr2.1:9827567-9827586 MS.gene54866:CDS 40.0%
TTATCAGGATCGTTTGCCTT+CGG + chr2.1:9828399-9828418 None:intergenic 40.0%
TTGACATGAGGAATCTGGAT+AGG - chr2.1:9828301-9828320 MS.gene54866:CDS 40.0%
TTGGGTGTTTAATACTCCAG+TGG - chr2.1:9827942-9827961 MS.gene54866:CDS 40.0%
! ATGAGGTATGGCTTGGATTA+TGG - chr2.1:9828216-9828235 MS.gene54866:CDS 40.0%
! ATGGTGTTAGAGAATGGTCA+TGG - chr2.1:9827685-9827704 MS.gene54866:CDS 40.0%
! GAATGGTGTTAAGAATGGAC+TGG - chr2.1:9827414-9827433 MS.gene54866:intron 40.0%
! GTAAACCTATTAGCCTCTCT+CGG + chr2.1:9827649-9827668 None:intergenic 40.0%
! TAGTCTTGATGTTGTTCAGC+TGG - chr2.1:9827330-9827349 MS.gene54866:intron 40.0%
! TGAGGTATGGCTTGGATTAT+GGG - chr2.1:9828217-9828236 MS.gene54866:CDS 40.0%
!! TATAGGGTTGATAATGGGAG+TGG - chr2.1:9827583-9827602 MS.gene54866:CDS 40.0%
!! TGAAGTGGACATTGATAGTG+TGG - chr2.1:9828551-9828570 MS.gene54866:CDS 40.0%
!! TTAAGAATGGACTGGCTTCA+CGG - chr2.1:9827422-9827441 MS.gene54866:intron 40.0%
!!! GTTGGATAGTGTTTTGGTTC+CGG - chr2.1:9827213-9827232 MS.gene54866:CDS 40.0%
AACCTGCTTGTCTTTCTCTC+GGG + chr2.1:9828822-9828841 None:intergenic 45.0%
AAGAGAAACAACGGATGGCT+GGG - chr2.1:9827524-9827543 MS.gene54866:CDS 45.0%
AAGAGATGCGGGGGATTAAA+AGG - chr2.1:9827452-9827471 MS.gene54866:intron 45.0%
AGAGATACAGAGATACTCGG+AGG - chr2.1:9827042-9827061 MS.gene54866:intron 45.0%
AGATACAGAGATACTCGGAG+GGG - chr2.1:9827044-9827063 MS.gene54866:intron 45.0%
AGATGTTCATGTAATGGCGG+AGG - chr2.1:9828134-9828153 MS.gene54866:CDS 45.0%
AGATTCCTCATGTCAAGAGG+CGG + chr2.1:9828297-9828316 None:intergenic 45.0%
CGCAAGCAAGAATTCCGAAT+TGG + chr2.1:9827767-9827786 None:intergenic 45.0%
CTAGAAAGACTCCTGCTTTG+CGG - chr2.1:9828268-9828287 MS.gene54866:CDS 45.0%
GAAGGAGAAGAGAACACCTA+AGG - chr2.1:9827726-9827745 MS.gene54866:CDS 45.0%
GACTTCTTGTTACTCTCTGC+AGG + chr2.1:9827805-9827824 None:intergenic 45.0%
GAGAGAAAGACAAGCAGGTT+TGG - chr2.1:9828822-9828841 MS.gene54866:CDS 45.0%
GAGATACAGAGATACTCGGA+GGG - chr2.1:9827043-9827062 MS.gene54866:intron 45.0%
GATAAGAAGGGGTTGGAGAA+TGG - chr2.1:9827397-9827416 MS.gene54866:CDS 45.0%
GATGAAACACAAGCACGGTT+GGG - chr2.1:9827924-9827943 MS.gene54866:CDS 45.0%
GATGTTGTTCAGCTGGAAGA+TGG - chr2.1:9827337-9827356 MS.gene54866:intron 45.0%
GCCAGTTGTGAATTCTAGGT+TGG - chr2.1:9827255-9827274 MS.gene54866:CDS 45.0%
GGAGAAATGGGACATGGATT+TGG - chr2.1:9827853-9827872 MS.gene54866:CDS 45.0%
GGAGCTATCAGCATTATTCG+AGG - chr2.1:9828155-9828174 MS.gene54866:CDS 45.0%
GGGGATTAAAAGGAAGCTTG+AGG - chr2.1:9827462-9827481 MS.gene54866:intron 45.0%
GTCTTTCTAGACAGAGGTGA+AGG + chr2.1:9828258-9828277 None:intergenic 45.0%
TCAAGCTCAAGGGATTTGGA+GGG + chr2.1:9828344-9828363 None:intergenic 45.0%
TCATCACATCTCCTCAAAGC+TGG + chr2.1:9827379-9827398 None:intergenic 45.0%
TCATGAGATGAGGTATGGCT+TGG - chr2.1:9828209-9828228 MS.gene54866:CDS 45.0%
TCCAGATTCCTCATGTCAAG+AGG + chr2.1:9828300-9828319 None:intergenic 45.0%
TGATGAAACACAAGCACGGT+TGG - chr2.1:9827923-9827942 MS.gene54866:CDS 45.0%
TGGTGGTTTGAATGTGTCTG+TGG - chr2.1:9827555-9827574 MS.gene54866:CDS 45.0%
TGTGGATGCAGAGACTCTTT+GGG - chr2.1:9828569-9828588 MS.gene54866:CDS 45.0%
TTCACAGTACCCAAGTCCAT+CGG + chr2.1:9828015-9828034 None:intergenic 45.0%
TTCTTGTTACTCTCTGCAGG+CGG + chr2.1:9827802-9827821 None:intergenic 45.0%
TTGATGGGACGAAGGATAAC+GGG - chr2.1:9827170-9827189 MS.gene54866:CDS 45.0%
! AAGCATGGCGTTGGAGAAAT+GGG - chr2.1:9827841-9827860 MS.gene54866:CDS 45.0%
! AGGTGAAGGTGCAGATATAG+CGG + chr2.1:9828244-9828263 None:intergenic 45.0%
! ATCTCACATCCGATGGACTT+GGG - chr2.1:9828003-9828022 MS.gene54866:CDS 45.0%
! GTTGATGGGACGAAGGATAA+CGG - chr2.1:9827169-9827188 MS.gene54866:intron 45.0%
! TGTGAATTCTAGGTTGGACG+TGG - chr2.1:9827261-9827280 MS.gene54866:CDS 45.0%
!! GAATAGAACTGGTTCGCCTT+AGG + chr2.1:9827745-9827764 None:intergenic 45.0%
!! GATTCTGGCTCTTCATCAAG+TGG - chr2.1:9829026-9829045 MS.gene54866:CDS 45.0%
!!! TCGTTTGCCTTCGGCTTTTT+TGG + chr2.1:9828390-9828409 None:intergenic 45.0%
ACATCCTCCGCAAACTCCTT+TGG + chr2.1:9828069-9828088 None:intergenic 50.0%
ACCTGCTTGTCTTTCTCTCG+GGG + chr2.1:9828821-9828840 None:intergenic 50.0%
ACTCGAATTTCCCCTTGCAC+GGG + chr2.1:9828960-9828979 None:intergenic 50.0%
AGCAGCTCAAGCAGTGATTC+TGG - chr2.1:9829011-9829030 MS.gene54866:CDS 50.0%
AGCTGAACGAGTCAAGCTCA+AGG + chr2.1:9828355-9828374 None:intergenic 50.0%
AGTCGAGGCTCAGCAAGAAT+TGG - chr2.1:9828034-9828053 MS.gene54866:CDS 50.0%
AGTGATAGCTCCTCATCGTC+TGG - chr2.1:9829169-9829188 MS.gene54866:CDS 50.0%
ATCACCAAAGGAGTTTGCGG+AGG - chr2.1:9828062-9828081 MS.gene54866:CDS 50.0%
CATCGTCTGGGTCTGATTCA+GGG - chr2.1:9829182-9829201 MS.gene54866:CDS 50.0%
CCAAGACGTTCAACATCCAC+TGG + chr2.1:9827961-9827980 None:intergenic 50.0%
CCAGTGGATGTTGAACGTCT+TGG - chr2.1:9827958-9827977 MS.gene54866:CDS 50.0%
CGAGTCAAGCTCAAGGGATT+TGG + chr2.1:9828348-9828367 None:intergenic 50.0%
CTCCGCCAGTTGTGAATTCT+AGG - chr2.1:9827251-9827270 MS.gene54866:CDS 50.0%
CTTCGTCCCATCAACAGTGA+CGG + chr2.1:9827164-9827183 None:intergenic 50.0%
GAAGAGAAACAACGGATGGC+TGG - chr2.1:9827523-9827542 MS.gene54866:CDS 50.0%
GACTCGAATTTCCCCTTGCA+CGG + chr2.1:9828961-9828980 None:intergenic 50.0%
GCAGGAGTCTTTCTAGACAG+AGG + chr2.1:9828264-9828283 None:intergenic 50.0%
GCCTCTTGACATGAGGAATC+TGG - chr2.1:9828296-9828315 MS.gene54866:CDS 50.0%
GCTGAACGAGTCAAGCTCAA+GGG + chr2.1:9828354-9828373 None:intergenic 50.0%
GGGGACTGTAGCTGAAGATA+AGG - chr2.1:9827012-9827031 MS.gene54866:CDS 50.0%
GTAGCGCCAGAATGAGTATG+AGG + chr2.1:9827133-9827152 None:intergenic 50.0%
GTCAAGCTCAAGGGATTTGG+AGG + chr2.1:9828345-9828364 None:intergenic 50.0%
GTCGAGTTTGAATCGTAGGC+AGG - chr2.1:9827297-9827316 MS.gene54866:intron 50.0%
GTGATAGCTCCTCATCGTCT+GGG - chr2.1:9829170-9829189 MS.gene54866:CDS 50.0%
GTGTGGATGCAGAGACTCTT+TGG - chr2.1:9828568-9828587 MS.gene54866:CDS 50.0%
GTGTTCCGAGAGAGGCTAAT+AGG - chr2.1:9827641-9827660 MS.gene54866:CDS 50.0%
TCATCGTCTGGGTCTGATTC+AGG - chr2.1:9829181-9829200 MS.gene54866:CDS 50.0%
TCCTGCTCCAAAAAAGCCGA+AGG - chr2.1:9828380-9828399 MS.gene54866:CDS 50.0%
TGAATCAGACCCAGACGATG+AGG + chr2.1:9829182-9829201 None:intergenic 50.0%
! ACTTGGGTACTGTGAAGTCG+AGG - chr2.1:9828019-9828038 MS.gene54866:CDS 50.0%
! CATCTCACATCCGATGGACT+TGG - chr2.1:9828002-9828021 MS.gene54866:CDS 50.0%
! CATGGAAAGAAGCATGGCGT+TGG - chr2.1:9827832-9827851 MS.gene54866:CDS 50.0%
! CTCGGGGCATCAACTATAAC+TGG + chr2.1:9828805-9828824 None:intergenic 50.0%
! GAAGCATGGCGTTGGAGAAA+TGG - chr2.1:9827840-9827859 MS.gene54866:CDS 50.0%
! GGGGCATCAACTATAACTGG+TGG + chr2.1:9828802-9828821 None:intergenic 50.0%
! GGTGAAGGTGCAGATATAGC+GGG + chr2.1:9828243-9828262 None:intergenic 50.0%
!!! AGTGTTTTGGTTCCGGAGGA+TGG - chr2.1:9827220-9827239 MS.gene54866:CDS 50.0%
!!! GGATAGTGTTTTGGTTCCGG+AGG - chr2.1:9827216-9827235 MS.gene54866:CDS 50.0%
!!! GTGTTTTGGTTCCGGAGGAT+GGG - chr2.1:9827221-9827240 MS.gene54866:CDS 50.0%
AATTTCCCCTTGCACGGGCA+AGG + chr2.1:9828955-9828974 None:intergenic 55.0%
ACGGTCGAAGCAAGAGATGC+GGG - chr2.1:9827441-9827460 MS.gene54866:intron 55.0%
AGAAACAACGGATGGCTGGG+AGG - chr2.1:9827527-9827546 MS.gene54866:CDS 55.0%
AGCTAAGCACGCTCACTCTG+AGG - chr2.1:9827606-9827625 MS.gene54866:CDS 55.0%
CAAGCAGGTTTGGCCTCTTG+TGG - chr2.1:9828832-9828851 MS.gene54866:CDS 55.0%
CACGGTCGAAGCAAGAGATG+CGG - chr2.1:9827440-9827459 MS.gene54866:intron 55.0%
CCAACGACCTCACCGTTTCA+AGG + chr2.1:9827492-9827511 None:intergenic 55.0%
CCTTGAAACGGTGAGGTCGT+TGG - chr2.1:9827489-9827508 MS.gene54866:intron 55.0%
CTTCTGCTGGGCAATTCGCT+CGG + chr2.1:9828682-9828701 None:intergenic 55.0%
GCTCAAGGGATTTGGAGGGT+TGG + chr2.1:9828340-9828359 None:intergenic 55.0%
GCTTGAGGGCGACCTTGAAA+CGG - chr2.1:9827477-9827496 MS.gene54866:intron 55.0%
GGTTCCGGAGGATGGGAATT+CGG - chr2.1:9827228-9827247 MS.gene54866:CDS 55.0%
TTCCTCATGTCAAGAGGCGG+TGG + chr2.1:9828294-9828313 None:intergenic 55.0%
TTCTGCAGGTGTTCCGAGAG+AGG - chr2.1:9827633-9827652 MS.gene54866:CDS 55.0%
! CGTCACTGTTGATGGGACGA+AGG - chr2.1:9827162-9827181 MS.gene54866:intron 55.0%
! GGCGTTGGAGAAATGGGACA+TGG - chr2.1:9827847-9827866 MS.gene54866:CDS 55.0%
!! CACTCTGAGGTAGCTTCTGC+AGG - chr2.1:9827619-9827638 MS.gene54866:CDS 55.0%
!! CGGTGAGGTCGTTGGTGATT+AGG - chr2.1:9827497-9827516 MS.gene54866:intron 55.0%
!! CTGGTGGTTCTTGGCTCTAC+AGG + chr2.1:9828786-9828805 None:intergenic 55.0%
!!! GCCTTCGGCTTTTTTGGAGC+AGG + chr2.1:9828384-9828403 None:intergenic 55.0%
ACCGCCACCGTCACTGTTGA+TGG - chr2.1:9827154-9827173 MS.gene54866:intron 60.0%
AGGGCGACCTTGAAACGGTG+AGG - chr2.1:9827482-9827501 MS.gene54866:intron 60.0%
CAACGGATGGCTGGGAGGTA+TGG - chr2.1:9827532-9827551 MS.gene54866:CDS 60.0%
CCCATCAACAGTGACGGTGG+CGG + chr2.1:9827158-9827177 None:intergenic 60.0%
CCGCCACCGTCACTGTTGAT+GGG - chr2.1:9827155-9827174 MS.gene54866:intron 60.0%
CGAGCGAATTGCCCAGCAGA+AGG - chr2.1:9828680-9828699 MS.gene54866:CDS 60.0%
CGGTCGAAGCAAGAGATGCG+GGG - chr2.1:9827442-9827461 MS.gene54866:intron 60.0%
CGTCCCATCAACAGTGACGG+TGG + chr2.1:9827161-9827180 None:intergenic 60.0%
GCCCCGAGAGAAAGACAAGC+AGG - chr2.1:9828817-9828836 MS.gene54866:CDS 60.0%
GGAGCCGAATTCCCATCCTC+CGG + chr2.1:9827235-9827254 None:intergenic 60.0%
GGTCGAAGCAAGAGATGCGG+GGG - chr2.1:9827443-9827462 MS.gene54866:intron 60.0%
! ATCAACAGTGACGGTGGCGG+TGG + chr2.1:9827155-9827174 None:intergenic 60.0%
! ATGGCTGGGAGGTATGGTGG+TGG - chr2.1:9827538-9827557 MS.gene54866:CDS 60.0%
CCCATCCTTGCCCGTGCAAG+GGG - chr2.1:9828947-9828966 MS.gene54866:CDS 65.0%
CCCCATCCTTGCCCGTGCAA+GGG - chr2.1:9828946-9828965 MS.gene54866:CDS 65.0%
CCCCTTGCACGGGCAAGGAT+GGG + chr2.1:9828950-9828969 None:intergenic 65.0%
CCCTTGCACGGGCAAGGATG+GGG + chr2.1:9828949-9828968 None:intergenic 65.0%
CCTTGCACGGGCAAGGATGG+GGG + chr2.1:9828948-9828967 None:intergenic 65.0%
GGCCACCGCCTCTTGACATG+AGG - chr2.1:9828289-9828308 MS.gene54866:CDS 65.0%
TCCCCTTGCACGGGCAAGGA+TGG + chr2.1:9828951-9828970 None:intergenic 65.0%
! CGGATGGCTGGGAGGTATGG+TGG - chr2.1:9827535-9827554 MS.gene54866:CDS 65.0%
AGAGGCGGTGGCCGCAAAGC+AGG + chr2.1:9828282-9828301 None:intergenic 70.0%
CCCCCATCCTTGCCCGTGCA+AGG - chr2.1:9828945-9828964 MS.gene54866:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9827004 9829213 9827004 ID=MS.gene54866
chr2.1 mRNA 9827004 9829213 9827004 ID=MS.gene54866.t1;Parent=MS.gene54866
chr2.1 exon 9827516 9829213 9827516 ID=MS.gene54866.t1.exon1;Parent=MS.gene54866.t1
chr2.1 CDS 9827516 9829213 9827516 ID=cds.MS.gene54866.t1;Parent=MS.gene54866.t1
chr2.1 exon 9827379 9827427 9827379 ID=MS.gene54866.t1.exon2;Parent=MS.gene54866.t1
chr2.1 CDS 9827379 9827427 9827379 ID=cds.MS.gene54866.t1;Parent=MS.gene54866.t1
chr2.1 exon 9827170 9827286 9827170 ID=MS.gene54866.t1.exon3;Parent=MS.gene54866.t1
chr2.1 CDS 9827170 9827286 9827170 ID=cds.MS.gene54866.t1;Parent=MS.gene54866.t1
chr2.1 exon 9827004 9827056 9827004 ID=MS.gene54866.t1.exon4;Parent=MS.gene54866.t1
chr2.1 CDS 9827004 9827056 9827004 ID=cds.MS.gene54866.t1;Parent=MS.gene54866.t1
Gene Sequence

>MS.gene54866

ATGGATTCGGGGACTGTAGCTGAAGATAAGGTAGTTAGAGAGATACAGAGATACTCGGAGGGGAAAGTATACACGAGAAAAAATTTCAAAGTTTCAGAGGATAACGTTAATTCCTTGGAAGTTGTTCCTCATACTCATTCTGGCGCTACCACCGCCACCGTCACTGTTGATGGGACGAAGGATAACGGGAATAATGTTTCGGTTCAACAGTTGGATAGTGTTTTGGTTCCGGAGGATGGGAATTCGGCTCCGCCAGTTGTGAATTCTAGGTTGGACGTGGTTTCTGAAGATTCGTCGAGTTTGAATCGTAGGCAGGATGAACATTTTAGTCTTGATGTTGTTCAGCTGGAAGATGGTAATGATTTGTTAGAACCAGCTTTGAGGAGATGTGATGATAAGAAGGGGTTGGAGAATGGTGTTAAGAATGGACTGGCTTCACGGTCGAAGCAAGAGATGCGGGGGATTAAAAGGAAGCTTGAGGGCGACCTTGAAACGGTGAGGTCGTTGGTGATTAGGATTGAAGAGAAACAACGGATGGCTGGGAGGTATGGTGGTGGTTTGAATGTGTCTGTGGATCGTTATAGGGTTGATAATGGGAGTGGAGCTAAGCACGCTCACTCTGAGGTAGCTTCTGCAGGTGTTCCGAGAGAGGCTAATAGGTTTACACGCCAGTTAAGTGTAATGGTGTTAGAGAATGGTCATGGAATTAGTGAAGGTGTTGAGAAGGAGAAGAGAACACCTAAGGCGAACCAGTTCTATTCCAATTCGGAATTCTTGCTTGCGAAAGATAAGTTTCCGCCTGCAGAGAGTAACAAGAAGTCAAAATCACATGGAAAGAAGCATGGCGTTGGAGAAATGGGACATGGATTTGGGATAGTATCGAAGTATTTGAAGAACTGTAGCTCATTGCTTGAAAAGTTGATGAAACACAAGCACGGTTGGGTGTTTAATACTCCAGTGGATGTTGAACGTCTTGGTTTGCATGATTATTTTATTATCATCTCACATCCGATGGACTTGGGTACTGTGAAGTCGAGGCTCAGCAAGAATTGGTACAAATCACCAAAGGAGTTTGCGGAGGATGTGAGACTTACTTTTCGTAACGCCATGACATATAATCCTAAAGGGCAAGATGTTCATGTAATGGCGGAGGAGCTATCAGCATTATTCGAGGAAAGATGGGCCATTATAGAGTCAAATTACAATCATGAGATGAGGTATGGCTTGGATTATGGGCCCGCTATATCTGCACCTTCACCTCTGTCTAGAAAGACTCCTGCTTTGCGGCCACCGCCTCTTGACATGAGGAATCTGGATAGGTCAGAATCAATAACCAACCCTCCAAATCCCTTGAGCTTGACTCGTTCAGCTCGAACTCCTGCTCCAAAAAAGCCGAAGGCAAACGATCCTGATAAAAGAGACATGACATACGATGAAAAGCAAAAACTTAGCACACATCTTCAGAATCTACCACCTGAAAAACTAGATGCTATTGTACAGATCATTAAGAAACGAAATTCGGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCAGAGACTCTTTGGGAGCTTGATAGATATGTTACCAACTATAAGAAAAGTTTGAGCAAATACAAGAGGAAGGCCGAACTTGCTATTCAAGCTAGAGCAGAAGCCGAGCGAATTGCCCAGCAGAAGGTAAAATTGACAATTTCAACGTTTAATATCCAGTGTCTTCTTTGGCAAATAATTTTTACTAATTGAATTTATTTCATGCTTCCTGTAGAGCCAAGAACCACCAGTTATAGTTGATGCCCCGAGAGAAAGACAAGCAGGTTTGGCCTCTTGTGGACTATTATTGTTGATCTCTTATCATCATTCATCAATTAAATTAATTGAAATATTTTGTCTTCTTGTTTCTGAGCAGATGAAAGAAATGCTCCCCCATCCTTGCCCGTGCAAGGGGAAATTCGAGTCGATAATAATGGGAGTAAGACAAGTAGCTCAAGCAGCTCAAGCAGTGATTCTGGCTCTTCATCAAGTGGTATATTAAATAATTATTTAGCAGATATCTGTCCCATAATTTAGGTTATACAAGGTCAACCTGGCTTTTACTTTTATTCAAATTTAATGTTTGATAATAATGTGCTTTTGCAGATTCTGATAGTGATAGCTCCTCATCGTCTGGGTCTGATTCAGGGTCACAGTGA
Protein sequence

>MS.gene54866.t1

MDSGTVAEDKVVREIQRYSEGKVYTRKNFKVSEDNVNSLEVVPHTHSGATTATVTVDGTKDNGNNVSVQQLDSVLVPEDGNSAPPVVNSRLDVVSEDSSSLNRRQDEHFSLDVVQLEDGNDLLEPALRRCDDKKGLENGVKNGLASRSKQEMRGIKRKLEGDLETVRSLVIRIEEKQRMAGRYGGGLNVSVDRYRVDNGSGAKHAHSEVASAGVPREANRFTRQLSVMVLENGHGISEGVEKEKRTPKANQFYSNSEFLLAKDKFPPAESNKKSKSHGKKHGVGEMGHGFGIVSKYLKNCSSLLEKLMKHKHGWVFNTPVDVERLGLHDYFIIISHPMDLGTVKSRLSKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMRYGLDYGPAISAPSPLSRKTPALRPPPLDMRNLDRSESITNPPNPLSLTRSARTPAPKKPKANDPDKRDMTYDEKQKLSTHLQNLPPEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKYKRKAELAIQARAEAERIAQQKSQEPPVIVDAPRERQADERNAPPSLPVQGEIRVDNNGSKTSSSSSSSSDSGSSSSDSDSDSSSSSGSDSGSQ