AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55003

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55003.t1 MTR_7g082970 75.000 100 13 4 1 91 1 97 2.72e-32 113
MS.gene55003.t1 MTR_7g082970 96.000 50 2 0 86 135 161 210 1.01e-30 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55003.t1 AT5G38060 86.076 79 11 0 57 135 55 133 7.00e-49 153
MS.gene55003.t1 AT5G38060 73.418 79 9 1 57 135 55 121 2.23e-37 124

Find 42 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTTCATACTGCCCATTT+TGG 0.189700 7.2:+24370388 MS.gene55003:CDS
GGTTGAGTTGAGGGTCAAAT+TGG 0.278055 7.2:-24370351 None:intergenic
CAAGTGGGGTACCTCCAAAA+TGG 0.326039 7.2:-24370402 None:intergenic
GCCAGAGCCAGGAGTGTTCA+TGG 0.356277 7.2:-24372632 None:intergenic
TGCTCCAATTCCCACCTATT+CGG 0.370455 7.2:+24370263 MS.gene55003:CDS
GTTGAGTTGAGGGTCAAATT+GGG 0.401053 7.2:-24370350 None:intergenic
AGTTTGAGAGTGTGCATGAA+GGG 0.401454 7.2:+24372605 MS.gene55003:CDS
ATTTGAGATTGAAAAGCAAA+AGG 0.417013 7.2:-24370214 None:intergenic
CTGGCAAAGTTCTTCAGTAT+TGG 0.418499 7.2:+24372650 MS.gene55003:CDS
CAAGAGGGTGGTTGAGTTGA+GGG 0.421241 7.2:-24370360 None:intergenic
TTTGAGATTGAAAAGCAAAA+GGG 0.427124 7.2:-24370213 None:intergenic
AGTTCTGAGGTTGATGCTAC+TGG 0.432541 7.2:-24370311 None:intergenic
AACACCGAATAGGTGGGAAT+TGG 0.447749 7.2:-24370267 None:intergenic
CTTCAGTATTGGCACTGTTG+TGG 0.459406 7.2:+24372661 MS.gene55003:CDS
ACCATGAACACTCCTGGCTC+TGG 0.463937 7.2:+24372631 MS.gene55003:CDS
CAAGTGTGAGCAATTTATGT+TGG 0.464095 7.2:-24370242 None:intergenic
ACCGAGATCAAATGGATCTT+CGG 0.464937 7.2:-24372686 None:intergenic
AAGTGTGAGCAATTTATGTT+GGG 0.472239 7.2:-24370241 None:intergenic
GCGGTGCAACCGAGATCAAA+TGG 0.473215 7.2:-24372694 None:intergenic
TGAAGAACTTTGCCAGAGCC+AGG 0.482219 7.2:-24372643 None:intergenic
AAGTGGGGTACCTCCAAAAT+GGG 0.496242 7.2:-24370401 None:intergenic
TCTAAATCAGCCATCATATG+AGG 0.498868 7.2:-24372728 None:intergenic
GCTCCTCACTCCTCATATGA+TGG 0.504286 7.2:+24372718 MS.gene55003:CDS
TGCAGTTCTTGCAAGTTCTG+AGG 0.514501 7.2:-24370324 None:intergenic
GAAGTTGAGGAACACCGAAT+AGG 0.514958 7.2:-24370277 None:intergenic
AAGTTTGAGAGTGTGCATGA+AGG 0.529792 7.2:+24372604 MS.gene55003:CDS
TCCGAAGATCCATTTGATCT+CGG 0.533731 7.2:+24372685 MS.gene55003:CDS
GCAAGAGGGTGGTTGAGTTG+AGG 0.539179 7.2:-24370361 None:intergenic
TTGAGATTGAAAAGCAAAAG+GGG 0.541761 7.2:-24370212 None:intergenic
GTGAGAAAACATTAGAGCCA+TGG 0.553787 7.2:-24370155 None:intergenic
GTTGAGGAACACCGAATAGG+TGG 0.554232 7.2:-24370274 None:intergenic
TGAGAAAACATTAGAGCCAT+GGG 0.558269 7.2:-24370154 None:intergenic
TTGTTGCAATTAAGATGAAG+AGG 0.560786 7.2:-24370187 None:intergenic
GTTTGAGAGTGTGCATGAAG+GGG 0.579414 7.2:+24372606 MS.gene55003:CDS
TTGCAATTAAGATGAAGAGG+AGG 0.605087 7.2:-24370184 None:intergenic
GTATGAAATCGACAAGCAAG+AGG 0.638478 7.2:-24370376 None:intergenic
TTTGAGAGTGTGCATGAAGG+GGG 0.644148 7.2:+24372607 MS.gene55003:CDS
TTGAGGAACACCGAATAGGT+GGG 0.650195 7.2:-24370273 None:intergenic
ATATGAGGAGTGAGGAGCAG+CGG 0.661121 7.2:-24372713 None:intergenic
GAAATCGACAAGCAAGAGGG+TGG 0.667295 7.2:-24370372 None:intergenic
CAGCCATCATATGAGGAGTG+AGG 0.672668 7.2:-24372721 None:intergenic
TATGAAATCGACAAGCAAGA+GGG 0.673289 7.2:-24370375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAGCTTAGTTTATA+AGG + chr7.2:24370503-24370522 MS.gene55003:intron 15.0%
!! TGATTTATGATAGAATATTA+TGG - chr7.2:24372204-24372223 None:intergenic 15.0%
!!! TTATTAAGTTTCATTTGTTA+TGG + chr7.2:24370866-24370885 MS.gene55003:intron 15.0%
!! AAATTGAAACTATTACCAAA+AGG - chr7.2:24372448-24372467 None:intergenic 20.0%
!! ATGAAGAAAGTTAACAAAAA+TGG - chr7.2:24371061-24371080 None:intergenic 20.0%
!! ATGACTAAACTTGTAAATAT+GGG + chr7.2:24371178-24371197 MS.gene55003:intron 20.0%
!! CTTTATAGAAATCAATGTTA+TGG - chr7.2:24371983-24372002 None:intergenic 20.0%
!!! ATTTGAAATTTATTGTGCAT+CGG + chr7.2:24371112-24371131 MS.gene55003:intron 20.0%
!!! GTGATATTAATTTGAGAAAA+TGG + chr7.2:24370589-24370608 MS.gene55003:intron 20.0%
! AACTTTCATCAATGCAATAT+TGG - chr7.2:24372474-24372493 None:intergenic 25.0%
! AATAAAAACATAGAGGTCAA+TGG - chr7.2:24372241-24372260 None:intergenic 25.0%
! AATAGCTTTCATCAGTATAT+AGG + chr7.2:24371509-24371528 MS.gene55003:intron 25.0%
! CATGACTAAACTTGTAAATA+TGG + chr7.2:24371177-24371196 MS.gene55003:intron 25.0%
! GGTGTGAAAATGATAAAAAA+GGG + chr7.2:24370973-24370992 MS.gene55003:intron 25.0%
! GTACATTAGACTTAGTATAA+CGG - chr7.2:24370939-24370958 None:intergenic 25.0%
! GTGTGAAAATGATAAAAAAG+GGG + chr7.2:24370974-24370993 MS.gene55003:intron 25.0%
! TATAAAGCTGAAGTTAACAA+AGG + chr7.2:24371996-24372015 MS.gene55003:intron 25.0%
! TATGATAGAATATTATGGTC+TGG - chr7.2:24372199-24372218 None:intergenic 25.0%
! TCACAAAATTCACAAACAAA+AGG - chr7.2:24372288-24372307 None:intergenic 25.0%
! TGGTGTGAAAATGATAAAAA+AGG + chr7.2:24370972-24370991 MS.gene55003:intron 25.0%
! TGTGAAAATGATAAAAAAGG+GGG + chr7.2:24370975-24370994 MS.gene55003:intron 25.0%
! TTTCAAATATCAAATACTGC+AGG - chr7.2:24371100-24371119 None:intergenic 25.0%
!! AATTTTCACGAAACAGATTT+TGG + chr7.2:24372307-24372326 MS.gene55003:intron 25.0%
!! ATTTGAGATTGAAAAGCAAA+AGG - chr7.2:24370217-24370236 None:intergenic 25.0%
!! ATTTTCACGAAACAGATTTT+GGG + chr7.2:24372308-24372327 MS.gene55003:intron 25.0%
!! TTTGAGATTGAAAAGCAAAA+GGG - chr7.2:24370216-24370235 None:intergenic 25.0%
!!! ATTTGTGGTAGTTTTGAAAA+GGG - chr7.2:24371426-24371445 None:intergenic 25.0%
!!! GACCTCTATGTTTTTATTAA+CGG + chr7.2:24372243-24372262 MS.gene55003:intron 25.0%
AAATCTTGTTGGATCCATAT+TGG + chr7.2:24372094-24372113 MS.gene55003:intron 30.0%
AACTTAAGTGTGTAATCACA+AGG - chr7.2:24371901-24371920 None:intergenic 30.0%
AAGTGTGAGCAATTTATGTT+GGG - chr7.2:24370244-24370263 None:intergenic 30.0%
AATGCATAAGAAAAAGCAAG+TGG - chr7.2:24370421-24370440 None:intergenic 30.0%
AGTTAACAAAAATGGCATAC+AGG - chr7.2:24371053-24371072 None:intergenic 30.0%
ATGCATAAGAAAAAGCAAGT+GGG - chr7.2:24370420-24370439 None:intergenic 30.0%
GACTTGTGAACATTTATATG+AGG + chr7.2:24371840-24371859 MS.gene55003:intron 30.0%
GTAGAGAAACTAAATCTTGT+TGG + chr7.2:24372083-24372102 MS.gene55003:intron 30.0%
GTGAAAATGATAAAAAAGGG+GGG + chr7.2:24370976-24370995 MS.gene55003:intron 30.0%
TAACTTTCTTCTTGGAGATT+GGG + chr7.2:24371464-24371483 MS.gene55003:intron 30.0%
TACACACTACTTTAATTCTG+CGG + chr7.2:24371730-24371749 MS.gene55003:intron 30.0%
TGAAAATGATAAAAAAGGGG+GGG + chr7.2:24370977-24370996 MS.gene55003:intron 30.0%
TGCCGTTAATAAAAACATAG+AGG - chr7.2:24372248-24372267 None:intergenic 30.0%
TGGTTGCAAAATTCATATGA+TGG - chr7.2:24372133-24372152 None:intergenic 30.0%
TTGAGATTGAAAAGCAAAAG+GGG - chr7.2:24370215-24370234 None:intergenic 30.0%
TTGTTGCAATTAAGATGAAG+AGG - chr7.2:24370190-24370209 None:intergenic 30.0%
! GTCTACATTTTGTACCAATA+TGG - chr7.2:24372111-24372130 None:intergenic 30.0%
! TGCTTCTGATGTATTTGTTA+TGG + chr7.2:24372399-24372418 MS.gene55003:intron 30.0%
!! AATCTTATATAGAGCGTTGT+AGG + chr7.2:24371768-24371787 MS.gene55003:intron 30.0%
!! ATCTTATATAGAGCGTTGTA+GGG + chr7.2:24371769-24371788 MS.gene55003:intron 30.0%
!!! ATATGATGCCTTTTTTACTC+AGG + chr7.2:24371613-24371632 MS.gene55003:intron 30.0%
!!! GATTTGTGGTAGTTTTGAAA+AGG - chr7.2:24371427-24371446 None:intergenic 30.0%
AAAATGATAAAAAAGGGGGG+GGG + chr7.2:24370979-24370998 MS.gene55003:intron 35.0%
AACAAAGGATCTACTATGAC+AGG + chr7.2:24372011-24372030 MS.gene55003:intron 35.0%
AATACATGAGTAACATCCAG+AGG - chr7.2:24371653-24371672 None:intergenic 35.0%
AATGTACGTCGTTGAACTTA+TGG + chr7.2:24370952-24370971 MS.gene55003:intron 35.0%
ACACACTACTTTAATTCTGC+GGG + chr7.2:24371731-24371750 MS.gene55003:intron 35.0%
ACACCGATACTTCAAATTGA+AGG - chr7.2:24370702-24370721 None:intergenic 35.0%
ACTGCTGAATTACCAAGAAA+CGG + chr7.2:24371018-24371037 MS.gene55003:intron 35.0%
CAAACATAAACCAACTAGGT+GGG + chr7.2:24372151-24372170 MS.gene55003:intron 35.0%
CAACCAAACATAAACCAACT+AGG + chr7.2:24372147-24372166 MS.gene55003:intron 35.0%
CAAGTGTGAGCAATTTATGT+TGG - chr7.2:24370245-24370264 None:intergenic 35.0%
CCTTACATTTGAGTAGTCAA+AGG + chr7.2:24370785-24370804 MS.gene55003:intron 35.0%
CCTTTGACTACTCAAATGTA+AGG - chr7.2:24370788-24370807 None:intergenic 35.0%
CTAACTTTCTTCTTGGAGAT+TGG + chr7.2:24371463-24371482 MS.gene55003:intron 35.0%
CTGGATGTTACTCATGTATT+TGG + chr7.2:24371653-24371672 MS.gene55003:intron 35.0%
CTTAGTATAACGGCTAAAGT+AGG - chr7.2:24370929-24370948 None:intergenic 35.0%
GAAAATGATAAAAAAGGGGG+GGG + chr7.2:24370978-24370997 MS.gene55003:intron 35.0%
GTGTAATCACAAGGTCTATT+AGG - chr7.2:24371892-24371911 None:intergenic 35.0%
TAATGCCTCCTGAGTAAAAA+AGG - chr7.2:24371624-24371643 None:intergenic 35.0%
TACTTTCAAACCTGACATGA+AGG + chr7.2:24371208-24371227 MS.gene55003:intron 35.0%
TATGAAATCGACAAGCAAGA+GGG - chr7.2:24370378-24370397 None:intergenic 35.0%
TCTTGAAGTAGTGATAGTTG+AGG + chr7.2:24371323-24371342 MS.gene55003:intron 35.0%
TGCATAAGAAAAAGCAAGTG+GGG - chr7.2:24370419-24370438 None:intergenic 35.0%
TGGTTATTGTCGTGACATTT+AGG + chr7.2:24372419-24372438 MS.gene55003:intron 35.0%
TGTGAGATGATGCAATTAGA+AGG + chr7.2:24372047-24372066 MS.gene55003:intron 35.0%
TTGCAATTAAGATGAAGAGG+AGG - chr7.2:24370187-24370206 None:intergenic 35.0%
! CAAAAGTTTAGTTCCGAGTT+TGG + chr7.2:24372333-24372352 MS.gene55003:intron 35.0%
! GCAGCTTTAATGTTCTATCT+AGG + chr7.2:24371259-24371278 MS.gene55003:intron 35.0%
! TTTCTATTTTCCTCAACCAC+AGG + chr7.2:24372568-24372587 MS.gene55003:intron 35.0%
!! GTGACATTTAGGATTCCTTT+TGG + chr7.2:24372430-24372449 MS.gene55003:intron 35.0%
AAAGGGTTAGAAGAAAGCCA+TGG - chr7.2:24371409-24371428 None:intergenic 40.0%
AAAGTTGAGTAATGGTGAGC+AGG + chr7.2:24370894-24370913 MS.gene55003:intron 40.0%
AAATGATAAAAAAGGGGGGG+GGG + chr7.2:24370980-24370999 MS.gene55003:intron 40.0%
AAGAAGAAAGTTAGCGAGGA+AGG - chr7.2:24371457-24371476 None:intergenic 40.0%
ACCGAGATCAAATGGATCTT+CGG - chr7.2:24372689-24372708 None:intergenic 40.0%
AGAAGAAAGTTAGCGAGGAA+GGG - chr7.2:24371456-24371475 None:intergenic 40.0%
CACACTACTTTAATTCTGCG+GGG + chr7.2:24371732-24371751 MS.gene55003:intron 40.0%
CCAAACATAAACCAACTAGG+TGG + chr7.2:24372150-24372169 MS.gene55003:intron 40.0%
CTAGCTATCTAGACACAAGT+TGG + chr7.2:24372530-24372549 MS.gene55003:intron 40.0%
CTGGCAAAGTTCTTCAGTAT+TGG + chr7.2:24372650-24372669 MS.gene55003:CDS 40.0%
CTTTCTCTTAGTTTCTCCTG+TGG - chr7.2:24372587-24372606 None:intergenic 40.0%
GAGATAAACAATGCACTGAG+TGG - chr7.2:24371375-24371394 None:intergenic 40.0%
GCATTAAGCAGTACACATGT+TGG + chr7.2:24370628-24370647 MS.gene55003:intron 40.0%
GGTTCTTGAGTCTTGATTAG+TGG + chr7.2:24371485-24371504 MS.gene55003:intron 40.0%
GTATGAAATCGACAAGCAAG+AGG - chr7.2:24370379-24370398 None:intergenic 40.0%
GTTCAGTTTACTTTCAGACC+TGG + chr7.2:24371141-24371160 MS.gene55003:intron 40.0%
TAAACAATGCACTGAGTGGA+AGG - chr7.2:24371371-24371390 None:intergenic 40.0%
TCCGAAGATCCATTTGATCT+CGG + chr7.2:24372685-24372704 MS.gene55003:CDS 40.0%
TGAAAGTCAAGTGTGCTGAA+TGG + chr7.2:24370752-24370771 MS.gene55003:intron 40.0%
TGCTCACCATTACTCAACTT+TGG - chr7.2:24370895-24370914 None:intergenic 40.0%
TGGCTTCCAAAGTTGAGTAA+TGG + chr7.2:24370886-24370905 MS.gene55003:intron 40.0%
TGTACGAGGTTCACAATGTA+CGG + chr7.2:24371237-24371256 MS.gene55003:intron 40.0%
TTCAAACCTGACATGAAGGA+AGG + chr7.2:24371212-24371231 MS.gene55003:intron 40.0%
TTCCTCGCTAACTTTCTTCT+TGG + chr7.2:24371456-24371475 MS.gene55003:intron 40.0%
TTGGAGGAAAACTTGGGTAA+TGG + chr7.2:24372352-24372371 MS.gene55003:intron 40.0%
! AAGTTTAGTTCCGAGTTTGG+AGG + chr7.2:24372336-24372355 MS.gene55003:intron 40.0%
! AAGTTTGAGAGTGTGCATGA+AGG + chr7.2:24372604-24372623 MS.gene55003:CDS 40.0%
! AGTTTGAGAGTGTGCATGAA+GGG + chr7.2:24372605-24372624 MS.gene55003:CDS 40.0%
! ATTAGAAGGCACGTAGGTTT+AGG + chr7.2:24372061-24372080 MS.gene55003:intron 40.0%
! CCACCTAGTTGGTTTATGTT+TGG - chr7.2:24372153-24372172 None:intergenic 40.0%
! CGATTTCATACTGCCCATTT+TGG + chr7.2:24370388-24370407 MS.gene55003:CDS 40.0%
! GCGCCTTCAATTTGAAGTAT+CGG + chr7.2:24370696-24370715 MS.gene55003:intron 40.0%
! TTTCATACTGCCCATTTTGG+AGG + chr7.2:24370391-24370410 MS.gene55003:CDS 40.0%
!! GTTGAGTTGAGGGTCAAATT+GGG - chr7.2:24370353-24370372 None:intergenic 40.0%
!!! GATGCTACTGGTTTTGTTGT+TGG - chr7.2:24370302-24370321 None:intergenic 40.0%
!!! GGTTTTGTTGTTGGAAGTTG+AGG - chr7.2:24370293-24370312 None:intergenic 40.0%
!!! TGATGCCTTTTTTACTCAGG+AGG + chr7.2:24371616-24371635 MS.gene55003:intron 40.0%
AACACCGAATAGGTGGGAAT+TGG - chr7.2:24370270-24370289 None:intergenic 45.0%
AATGATAAAAAAGGGGGGGG+GGG + chr7.2:24370981-24371000 MS.gene55003:intron 45.0%
AGTGATAGTTGAGGCTTGAG+AGG + chr7.2:24371332-24371351 MS.gene55003:intron 45.0%
CCGAGTTTGGAGGAAAACTT+GGG + chr7.2:24372346-24372365 MS.gene55003:intron 45.0%
CTACTTTAATTCTGCGGGGA+AGG + chr7.2:24371736-24371755 MS.gene55003:intron 45.0%
CTCCAAGAAGAAAGTTAGCG+AGG - chr7.2:24371461-24371480 None:intergenic 45.0%
CTTAGTTTCTCCTGTGGTTG+AGG - chr7.2:24372581-24372600 None:intergenic 45.0%
GAAGAAAGCCATGGCTAACA+TGG - chr7.2:24371400-24371419 None:intergenic 45.0%
GAAGTTGAGGAACACCGAAT+AGG - chr7.2:24370280-24370299 None:intergenic 45.0%
GTCAAGTGTGCTGAATGGTT+TGG + chr7.2:24370757-24370776 MS.gene55003:intron 45.0%
TACAGTCCTTCCTTCATGTC+AGG - chr7.2:24371221-24371240 None:intergenic 45.0%
TATCTCGACCATGTTAGCCA+TGG + chr7.2:24371389-24371408 MS.gene55003:intron 45.0%
TCATGCTTGCTTTGTAAGCC+AGG - chr7.2:24371162-24371181 None:intergenic 45.0%
TCCGAGTTTGGAGGAAAACT+TGG + chr7.2:24372345-24372364 MS.gene55003:intron 45.0%
TGCAGTTCTTGCAAGTTCTG+AGG - chr7.2:24370327-24370346 None:intergenic 45.0%
TGCTCCAATTCCCACCTATT+CGG + chr7.2:24370263-24370282 MS.gene55003:CDS 45.0%
TTGAGGAACACCGAATAGGT+GGG - chr7.2:24370276-24370295 None:intergenic 45.0%
TTTAATTCTGCGGGGAAGGA+GGG + chr7.2:24371740-24371759 MS.gene55003:intron 45.0%
! AAGTGGGGTACCTCCAAAAT+GGG - chr7.2:24370404-24370423 None:intergenic 45.0%
! CCCAAGTTTTCCTCCAAACT+CGG - chr7.2:24372349-24372368 None:intergenic 45.0%
! CTTCAAATTGAAGGCGCGTT+CGG - chr7.2:24370693-24370712 None:intergenic 45.0%
! GATGCAATTAGAAGGCACGT+AGG + chr7.2:24372055-24372074 MS.gene55003:intron 45.0%
! GCTATCTAGACACAAGTTGG+CGG + chr7.2:24372533-24372552 MS.gene55003:intron 45.0%
! GTTTGAGAGTGTGCATGAAG+GGG + chr7.2:24372606-24372625 MS.gene55003:CDS 45.0%
! TTTGAGAGTGTGCATGAAGG+GGG + chr7.2:24372607-24372626 MS.gene55003:CDS 45.0%
!! AGGAAGGGCATTGTGATTTG+TGG - chr7.2:24371441-24371460 None:intergenic 45.0%
!! AGTTCTGAGGTTGATGCTAC+TGG - chr7.2:24370314-24370333 None:intergenic 45.0%
!! ATATAGAGCGTTGTAGGGCA+AGG + chr7.2:24371774-24371793 MS.gene55003:intron 45.0%
!! CACATGTTGGTGTCAAGTGT+CGG + chr7.2:24370641-24370660 MS.gene55003:intron 45.0%
!! CTTCAGTATTGGCACTGTTG+TGG + chr7.2:24372661-24372680 MS.gene55003:CDS 45.0%
!! GGAGGCATTAACATAACCTC+TGG + chr7.2:24371634-24371653 MS.gene55003:intron 45.0%
!! GGTTGAGTTGAGGGTCAAAT+TGG - chr7.2:24370354-24370373 None:intergenic 45.0%
AGGTGGGTCAGTCAACTACA+TGG + chr7.2:24372167-24372186 MS.gene55003:intron 50.0%
AGTTGACTGACCCACCTAGT+TGG - chr7.2:24372164-24372183 None:intergenic 50.0%
ATATGAGGAGTGAGGAGCAG+CGG - chr7.2:24372716-24372735 None:intergenic 50.0%
ATGATAAAAAAGGGGGGGGG+GGG + chr7.2:24370982-24371001 MS.gene55003:intron 50.0%
CAGCCATCATATGAGGAGTG+AGG - chr7.2:24372724-24372743 None:intergenic 50.0%
CATGAAGGAAGGACTGTACG+AGG + chr7.2:24371223-24371242 MS.gene55003:intron 50.0%
CTTTAATTCTGCGGGGAAGG+AGG + chr7.2:24371739-24371758 MS.gene55003:intron 50.0%
GAAATCGACAAGCAAGAGGG+TGG - chr7.2:24370375-24370394 None:intergenic 50.0%
GCTCCTCACTCCTCATATGA+TGG + chr7.2:24372718-24372737 MS.gene55003:CDS 50.0%
GTTGAGGAACACCGAATAGG+TGG - chr7.2:24370277-24370296 None:intergenic 50.0%
GTTGAGTAATGGTGAGCAGG+TGG + chr7.2:24370897-24370916 MS.gene55003:intron 50.0%
TGAAGAACTTTGCCAGAGCC+AGG - chr7.2:24372646-24372665 None:intergenic 50.0%
TTACCAAGAAACGGCTGTCG+TGG + chr7.2:24371027-24371046 MS.gene55003:intron 50.0%
! CAAGTGGGGTACCTCCAAAA+TGG - chr7.2:24370405-24370424 None:intergenic 50.0%
!! CAAGAGGGTGGTTGAGTTGA+GGG - chr7.2:24370363-24370382 None:intergenic 50.0%
ACCATGAACACTCCTGGCTC+TGG + chr7.2:24372631-24372650 MS.gene55003:CDS 55.0%
GCGGTGCAACCGAGATCAAA+TGG - chr7.2:24372697-24372716 None:intergenic 55.0%
TGATAAAAAAGGGGGGGGGG+GGG + chr7.2:24370983-24371002 MS.gene55003:intron 55.0%
! GCAAGAGGGTGGTTGAGTTG+AGG - chr7.2:24370364-24370383 None:intergenic 55.0%
AGGCCACGACAGCCGTTTCT+TGG - chr7.2:24371033-24371052 None:intergenic 60.0%
ATAAAAAAGGGGGGGGGGGG+GGG + chr7.2:24370985-24371004 MS.gene55003:intron 60.0%
GATAAAAAAGGGGGGGGGGG+GGG + chr7.2:24370984-24371003 MS.gene55003:intron 60.0%
GGGGGAACCATGAACACTCC+TGG + chr7.2:24372625-24372644 MS.gene55003:CDS 60.0%
!! GCCAGAGCCAGGAGTGTTCA+TGG - chr7.2:24372635-24372654 None:intergenic 60.0%
TAAAAAAGGGGGGGGGGGGG+GGG + chr7.2:24370986-24371005 MS.gene55003:intron 65.0%
AAAAAAGGGGGGGGGGGGGG+GGG + chr7.2:24370987-24371006 MS.gene55003:intron 70.0%
AAAAAGGGGGGGGGGGGGGG+GGG + chr7.2:24370988-24371007 MS.gene55003:intron 75.0%
! AAAAGGGGGGGGGGGGGGGG+GGG + chr7.2:24370989-24371008 MS.gene55003:intron 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG + chr7.2:24370990-24371009 MS.gene55003:intron 85.0%
! AAGGGGGGGGGGGGGGGGGG+GGG + chr7.2:24370991-24371010 MS.gene55003:intron 90.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 24370157 24372744 24370157 ID=MS.gene55003
chr7.2 mRNA 24370157 24372744 24370157 ID=MS.gene55003.t1;Parent=MS.gene55003
chr7.2 exon 24370157 24370412 24370157 ID=MS.gene55003.t1.exon1;Parent=MS.gene55003.t1
chr7.2 CDS 24370157 24370412 24370157 ID=cds.MS.gene55003.t1;Parent=MS.gene55003.t1
chr7.2 exon 24372590 24372744 24372590 ID=MS.gene55003.t1.exon2;Parent=MS.gene55003.t1
chr7.2 CDS 24372590 24372744 24372590 ID=cds.MS.gene55003.t1;Parent=MS.gene55003.t1
Gene Sequence

>MS.gene55003

ATGGCTCTAATGTTTTCTCACAACAATCCTCCTCTTCATCTTAATTGCAACAAAACCCCTTTTGCTTTTCAATCTCAAATCAAACCCAACATAAATTGCTCACACTTGCTCCAATTCCCACCTATTCGGTGTTCCTCAACTTCCAACAACAAAACCAGTAGCATCAACCTCAGAACTTGCAAGAACTGCAAAACCCAATTTGACCCTCAACTCAACCACCCTCTTGCTTGTCGATTTCATACTGCCCATTTTGGAGGTACCCCACTTGCTTTTTCTTATGCATTTCATATTTCTATTTTATTATCAAATTTGCAATATTTTGATTTTGATACATCAATAATTAAATATTATAAAGCTTAGTTTATAAGGTCTGACTGTAGTTAATAATGAATCATCAACACATGACACAACACTGACATTGACACGTAGATAGTGATATTAATTTGAGAAAATGGAAGTTATTGAATGTAAGCATTAAGCAGTACACATGTTGGTGTCAAGTGTCGGCATTCATCGTCGATACAATTCGTATACCGAACGCGCCTTCAATTTGAAGTATCGGTGTTTCATTTGTAATTAGTTACAAAGAAAATGATGAAAGTCAAGTGTGCTGAATGGTTTGGTAGTACCTTACATTTGAGTAGTCAAAGGTAAGCAAAATATCACTTATTTGTCTGTGTTAAGCAGTAGTGATGCAGACATAGTTAACTTATTAAGTTTCATTTGTTATGGCTTCCAAAGTTGAGTAATGGTGAGCAGGTGGTAAATGCCTACTTTAGCCGTTATACTAAGTCTAATGTACGTCGTTGAACTTATGGTGTGAAAATGATAAAAAAGGGGGGGGGGGGGGGGGGGGGATTAACTGCTGAATTACCAAGAAACGGCTGTCGTGGCCTGTATGCCATTTTTGTTAACTTTCTTCATGTGAATGTGAACATGTCCTGCAGTATTTGATATTTGAAATTTATTGTGCATCGGAATTAAGTTCAGTTTACTTTCAGACCTGGCTTACAAAGCAAGCATGACTAAACTTGTAAATATGGGTTGTCTTTACTTTCAAACCTGACATGAAGGAAGGACTGTACGAGGTTCACAATGTACGGCAGCTTTAATGTTCTATCTAGGATTACATTTGAATTCTCAGTTCTTCTCAATTGATGAAGTTTTCTTGAAGTAGTGATAGTTGAGGCTTGAGAGGTATATAAGAGCTTCCTTCCACTCAGTGCATTGTTTATCTCGACCATGTTAGCCATGGCTTTCTTCTAACCCTTTTCAAAACTACCACAAATCACAATGCCCTTCCTCGCTAACTTTCTTCTTGGAGATTGGGTTCTTGAGTCTTGATTAGTGGAAATAGCTTTCATCAGTATATAGGACAAGAAATATTGCATTAAATTTTAAGAATACTCGATTAATTAGTTGAGACGTGTAGCATCAAACTTGTTCTTAAATATAGATATGATGCCTTTTTTACTCAGGAGGCATTAACATAACCTCTGGATGTTACTCATGTATTTGGCTGTAAATTTAGTCAATAATCTAATAACTGATTAGAATGAAATGAAAAATATTGTACACACTACTTTAATTCTGCGGGGAAGGAGGGAGTAAAATCTTATATAGAGCGTTGTAGGGCAAGGTAACTGTGTTTTTCTGATGACATAGCTCAAATAGTAATGAAAAGACTTGTGAACATTTATATGAGGCAGCAATTATGATTTTAGATTTCATGCCTAATAGACCTTGTGATTACACACTTAAGTTGTGTTTACAACAGCTACAAATGTCAACACATAATATTGATTCTTTTACTTTTTTTAGAGCCATAACATTGATTTCTATAAAGCTGAAGTTAACAAAGGATCTACTATGACAGGCTCAAAGCTTGAATGTGAGATGATGCAATTAGAAGGCACGTAGGTTTAGGTAGAGAAACTAAATCTTGTTGGATCCATATTGGTACAAAATGTAGACCATCATATGAATTTTGCAACCAAACATAAACCAACTAGGTGGGTCAGTCAACTACATGGATCAAACCAGACCATAATATTCTATCATAAATCATATTTCTAGTCAAACCATTGACCTCTATGTTTTTATTAACGGCAACATTAAATATCACAAACCTTTTGTTTGTGAATTTTGTGAATTTTCACGAAACAGATTTTGGGTTCAAAAGTTTAGTTCCGAGTTTGGAGGAAAACTTGGGTAATGGTGCTAAACAGTTCATTATAAATATTGCTTCTGATGTATTTGTTATGGTTATTGTCGTGACATTTAGGATTCCTTTTGGTAATAGTTTCAATTTTGTCCAATATTGCATTGATGAAAGTTTGTGAAATTTGATATCATTGATACTAATATGCATTACTAGCTATCTAGACACAAGTTGGCGGTGATTGAATTTCTTTCTATTTTCCTCAACCACAGGAGAAACTAAGAGAAAGTTTGAGAGTGTGCATGAAGGGGGAACCATGAACACTCCTGGCTCTGGCAAAGTTCTTCAGTATTGGCACTGTTGTGGATCCGAAGATCCATTTGATCTCGGTTGCACCGCTGCTCCTCACTCCTCATATGATGGCTGA
Protein sequence

>MS.gene55003.t1

MALMFSHNNPPLHLNCNKTPFAFQSQIKPNINCSHLLQFPPIRCSSTSNNKTSSINLRTCKNCKTQFDPQLNHPLACRFHTAHFGGETKRKFESVHEGGTMNTPGSGKVLQYWHCCGSEDPFDLGCTAAPHSSYDG