Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55032.t1 | XP_003624375.3 | 98.6 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 1.70E-239 | 838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55032.t1 | Q8H0Z4 | 61.6 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 4.2e-138 | 492.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55032.t1 | G7KV66 | 98.6 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 1.2e-239 | 838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051946 | MS.gene55032 | 0.846393 | 2.23E-59 | -1.69E-46 |
| MS.gene053549 | MS.gene55032 | 0.818263 | 2.15E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene55032 | 0.84982 | 2.53E-60 | -1.69E-46 |
| MS.gene059223 | MS.gene55032 | 0.800434 | 1.44E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55032.t1 | MTR_7g082570 | 98.585 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 0.0 | 871 |
| MS.gene55032.t1 | MTR_6g004280 | 75.176 | 427 | 82 | 7 | 2 | 423 | 3 | 410 | 0.0 | 653 |
| MS.gene55032.t1 | MTR_1g110060 | 70.192 | 416 | 120 | 3 | 3 | 415 | 4 | 418 | 0.0 | 621 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55032.t1 | AT5G38200 | 74.408 | 422 | 104 | 3 | 3 | 421 | 11 | 431 | 0.0 | 655 |
| MS.gene55032.t1 | AT1G66860 | 72.131 | 427 | 113 | 4 | 2 | 424 | 6 | 430 | 0.0 | 642 |
| MS.gene55032.t1 | AT5G38200 | 77.326 | 344 | 74 | 3 | 3 | 343 | 11 | 353 | 0.0 | 550 |
| MS.gene55032.t1 | AT5G38200 | 76.218 | 349 | 79 | 3 | 3 | 348 | 11 | 358 | 0.0 | 548 |
| MS.gene55032.t1 | AT1G15040 | 61.631 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 0.0 | 518 |
| MS.gene55032.t1 | AT1G15040 | 67.500 | 320 | 86 | 5 | 1 | 318 | 3 | 306 | 6.50e-156 | 444 |
Find 97 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGCACCATTGGTTTA+AGG | 0.156822 | 7.2:+24589441 | MS.gene55032:CDS |
| GTCATAGTTCCACGTGTTTC+CGG | 0.202387 | 7.2:+24589022 | MS.gene55032:CDS |
| AGAAGAGGGTAAGTTTATTA+TGG | 0.212954 | 7.2:+24589609 | MS.gene55032:CDS |
| ACAGATTTGTTCTGAAGTTT+TGG | 0.231256 | 7.2:+24590923 | MS.gene55032:CDS |
| TTCTTGAAGTTCAGATTCTT+TGG | 0.232601 | 7.2:-24590376 | None:intergenic |
| GGGATGCCCCTTTGCTTATC+AGG | 0.245075 | 7.2:+24589690 | MS.gene55032:CDS |
| CCATTGGTTTAAGGATTCTT+TGG | 0.295908 | 7.2:+24589450 | MS.gene55032:CDS |
| TTCTTTGGAAGATGATAAAA+TGG | 0.302548 | 7.2:+24589465 | MS.gene55032:CDS |
| AGATGATAAAATGGACATTA+TGG | 0.311048 | 7.2:+24589474 | MS.gene55032:CDS |
| ATAATAAACTTACCCTCTTC+TGG | 0.314503 | 7.2:-24589607 | None:intergenic |
| AAAGCCTCTAAAACTTAATA+AGG | 0.318860 | 7.2:+24590269 | MS.gene55032:CDS |
| TCATAGTTCCACGTGTTTCC+GGG | 0.320130 | 7.2:+24589023 | MS.gene55032:CDS |
| TTCTGATGAATTTGATTATC+CGG | 0.321498 | 7.2:+24589669 | MS.gene55032:CDS |
| GAAGAGGGTAAGTTTATTAT+GGG | 0.330211 | 7.2:+24589610 | MS.gene55032:CDS |
| GTTTCTTTCAAGACAAAGTT+TGG | 0.332368 | 7.2:-24589236 | None:intergenic |
| CTCCTGATGGTTTGATTGAA+GGG | 0.345609 | 7.2:+24589560 | MS.gene55032:CDS |
| TCTCCTGATGGTTTGATTGA+AGG | 0.346975 | 7.2:+24589559 | MS.gene55032:CDS |
| CTTGTCTTTCTATCACACTA+TGG | 0.360794 | 7.2:+24590899 | MS.gene55032:CDS |
| TGAAAGAAACATTCCTTACT+TGG | 0.361983 | 7.2:+24589249 | MS.gene55032:CDS |
| AGAGAAAAGGTTAAAGCAAA+TGG | 0.371811 | 7.2:+24590761 | MS.gene55032:CDS |
| TCTTCTGGATTATAAGCATC+AGG | 0.386183 | 7.2:-24589592 | None:intergenic |
| TACCTCCACATGCCACATTT+AGG | 0.388978 | 7.2:-24589294 | None:intergenic |
| AAAATACACCTTTGCACCAT+TGG | 0.394132 | 7.2:+24589434 | MS.gene55032:CDS |
| TCTAAAACTTAATAAGGAAA+TGG | 0.405237 | 7.2:+24590275 | MS.gene55032:CDS |
| CAAAGCTATCTAACAACATA+TGG | 0.407726 | 7.2:-24589048 | None:intergenic |
| AACCCTTCAATCAAACCATC+AGG | 0.478520 | 7.2:-24589562 | None:intergenic |
| CGAATTACCTGATAAGCAAA+GGG | 0.482699 | 7.2:-24589697 | None:intergenic |
| AGCAAATGGGTGCAACAGTT+AGG | 0.485989 | 7.2:+24590775 | MS.gene55032:CDS |
| TTTCTCTTGCTGCACACTCA+AGG | 0.486814 | 7.2:-24590745 | None:intergenic |
| CCTCTACAAATTCCCAAGTA+AGG | 0.489708 | 7.2:-24589262 | None:intergenic |
| ATAAGGAAATGGAAAACAAA+AGG | 0.493176 | 7.2:+24590286 | MS.gene55032:CDS |
| TTGAAGTTCAGATTCTTTGG+TGG | 0.500970 | 7.2:-24590373 | None:intergenic |
| GAGAAAAGGTTAAAGCAAAT+GGG | 0.508467 | 7.2:+24590762 | MS.gene55032:CDS |
| AACGAACTTGTTCTTGCGAA+GGG | 0.515604 | 7.2:-24588723 | None:intergenic |
| GGGTTTAGAAGAGAGTGAAA+TGG | 0.519907 | 7.2:+24589354 | MS.gene55032:CDS |
| GACCTCTACAATCATGGCCT+TGG | 0.522039 | 7.2:+24590342 | MS.gene55032:CDS |
| GAAAGAAACATTCCTTACTT+GGG | 0.524058 | 7.2:+24589250 | MS.gene55032:CDS |
| AAAGAATCTGAACTTCAAGA+AGG | 0.524252 | 7.2:+24590378 | MS.gene55032:CDS |
| GGTGCAACAGTTAGGAATGC+AGG | 0.528138 | 7.2:+24590783 | MS.gene55032:CDS |
| AGGAAAAGAGCTTTCAAACA+AGG | 0.528817 | 7.2:+24589333 | MS.gene55032:CDS |
| TGAGTGTGCAGCAAGAGAAA+AGG | 0.530349 | 7.2:+24590748 | MS.gene55032:CDS |
| TCTGATGAATTTGATTATCC+GGG | 0.530989 | 7.2:+24589670 | MS.gene55032:CDS |
| ATTAACTATGATGATTATGA+TGG | 0.531284 | 7.2:+24589385 | MS.gene55032:CDS |
| TCCTTAAACCAATGGTGCAA+AGG | 0.531331 | 7.2:-24589442 | None:intergenic |
| CAACGAACTTGTTCTTGCGA+AGG | 0.532178 | 7.2:-24588724 | None:intergenic |
| AAGAATCTGAACTTCAAGAA+GGG | 0.532959 | 7.2:+24590379 | MS.gene55032:CDS |
| TTGTCTTTCTATCACACTAT+GGG | 0.536270 | 7.2:+24590900 | MS.gene55032:CDS |
| GCAAAAGACCTCTACAATCA+TGG | 0.537541 | 7.2:+24590336 | MS.gene55032:CDS |
| ACAATGGCTTCCGACCTATC+CGG | 0.540181 | 7.2:+24588665 | None:intergenic |
| CCTTACTTGGGAATTTGTAG+AGG | 0.541458 | 7.2:+24589262 | MS.gene55032:CDS |
| TCGAATTACCTGATAAGCAA+AGG | 0.541505 | 7.2:-24589698 | None:intergenic |
| AGTCGGCTATGGCGCGGTAC+CGG | 0.544931 | 7.2:+24589000 | MS.gene55032:CDS |
| ACTGAAGCAGAATGAGGAAA+GGG | 0.547734 | 7.2:+24590821 | MS.gene55032:CDS |
| CTTGATCTTATAGTCGGCTA+TGG | 0.548943 | 7.2:+24588989 | MS.gene55032:CDS |
| CCAAAGAATCCTTAAACCAA+TGG | 0.550485 | 7.2:-24589450 | None:intergenic |
| GGAAAAGAGCTTTCAAACAA+GGG | 0.551378 | 7.2:+24589334 | MS.gene55032:CDS |
| CATAGAAGAACACCATGGAT+TGG | 0.552815 | 7.2:-24589073 | None:intergenic |
| GTTAATAGCTATCATCATCA+AGG | 0.559848 | 7.2:+24589496 | MS.gene55032:CDS |
| GACTGAAGCAGAATGAGGAA+AGG | 0.561393 | 7.2:+24590820 | MS.gene55032:CDS |
| CTTACTTGGGAATTTGTAGA+GGG | 0.563096 | 7.2:+24589263 | MS.gene55032:CDS |
| CACATCATGTCTTTCTCAAG+AGG | 0.563983 | 7.2:+24589135 | MS.gene55032:CDS |
| AAAACTGCAGGAATTTGTAA+AGG | 0.565853 | 7.2:+24590206 | MS.gene55032:intron |
| TGATAAGCAAAGGGGCATCC+CGG | 0.567231 | 7.2:-24589688 | None:intergenic |
| AGGGAGAATGCCGGATAGGT+CGG | 0.568641 | 7.2:-24588675 | None:intergenic |
| CATAGCCGACTATAAGATCA+AGG | 0.569028 | 7.2:-24588988 | None:intergenic |
| CAGTTGTTGCTTATCAGAAG+AGG | 0.574778 | 7.2:+24590229 | MS.gene55032:CDS |
| GAGAAGACATTGATCCATCA+TGG | 0.578667 | 7.2:+24589101 | MS.gene55032:CDS |
| GGTACTTTATATCAAGACAT+AGG | 0.581651 | 7.2:+24589313 | MS.gene55032:CDS |
| CTTTGGTGGAACTCGTACCA+AGG | 0.582137 | 7.2:-24590359 | None:intergenic |
| GATAGCTTTGAACCAATCCA+TGG | 0.584098 | 7.2:+24589061 | MS.gene55032:CDS |
| CACGAGGGAGAATGCCGGAT+AGG | 0.585129 | 7.2:-24588679 | None:intergenic |
| GAAACACGTGGAACTATGAC+CGG | 0.585277 | 7.2:-24589019 | None:intergenic |
| TAGAACACGAGGGAGAATGC+CGG | 0.587130 | 7.2:-24588684 | None:intergenic |
| TATCACCTTGATCTTATAGT+CGG | 0.588888 | 7.2:+24588983 | MS.gene55032:CDS |
| GTGTCTTCCTCGTACCATGA+TGG | 0.596983 | 7.2:-24589115 | None:intergenic |
| CATGGTGTTCTTCTATGTGA+AGG | 0.597320 | 7.2:+24589079 | MS.gene55032:CDS |
| AAAATGGCAAGAAGTGTGAT+GGG | 0.598078 | 7.2:+24590846 | MS.gene55032:CDS |
| TGATGCTTATAATCCAGAAG+AGG | 0.598955 | 7.2:+24589594 | MS.gene55032:CDS |
| CATAGTTCCACGTGTTTCCG+GGG | 0.599219 | 7.2:+24589024 | MS.gene55032:CDS |
| AGAGAGACTGAAGCAGAATG+AGG | 0.600552 | 7.2:+24590815 | MS.gene55032:CDS |
| GATGCTTATAATCCAGAAGA+GGG | 0.613931 | 7.2:+24589595 | MS.gene55032:CDS |
| AGAATCTGAACTTCAAGAAG+GGG | 0.620915 | 7.2:+24590380 | MS.gene55032:CDS |
| CTAGAAACTATTAGAACACG+AGG | 0.624352 | 7.2:-24588695 | None:intergenic |
| CTCCTAAATGTGGCATGTGG+AGG | 0.633968 | 7.2:+24589292 | MS.gene55032:CDS |
| TACCAAGGCCATGATTGTAG+AGG | 0.634068 | 7.2:-24590344 | None:intergenic |
| CAACTCCTAAATGTGGCATG+TGG | 0.641956 | 7.2:+24589289 | MS.gene55032:CDS |
| AGAAGGGGCAGAGTTTCTAG+AGG | 0.642561 | 7.2:+24590395 | MS.gene55032:CDS |
| ATCTAACAACATATGGACCC+CGG | 0.643500 | 7.2:-24589041 | None:intergenic |
| CTTCTGGATTATAAGCATCA+GGG | 0.643591 | 7.2:-24589591 | None:intergenic |
| ATATGGACCCCGGAAACACG+TGG | 0.647974 | 7.2:-24589031 | None:intergenic |
| CATTGATCCATCATGGTACG+AGG | 0.661592 | 7.2:+24589108 | MS.gene55032:CDS |
| AGGGTCACAACTCCTAAATG+TGG | 0.664051 | 7.2:+24589282 | MS.gene55032:CDS |
| TCTTATAGTCGGCTATGGCG+CGG | 0.674953 | 7.2:+24588994 | MS.gene55032:CDS |
| TTATGATGGTCATAGACATG+AGG | 0.696322 | 7.2:+24589399 | MS.gene55032:CDS |
| GAATTACCTGATAAGCAAAG+GGG | 0.697423 | 7.2:-24589696 | None:intergenic |
| CTTCACATAGAAGAACACCA+TGG | 0.730931 | 7.2:-24589078 | None:intergenic |
| TAGAAACTATTAGAACACGA+GGG | 0.757631 | 7.2:-24588694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTTCAATACATTAA+AGG | - | chr7.2:24590697-24590716 | None:intergenic | 10.0% |
| !!! | ATAGTACTATTTTCATTTAT+TGG | + | chr7.2:24590043-24590062 | MS.gene55032:intron | 15.0% |
| !!! | ATTACATGATTATTGTTTTT+AGG | + | chr7.2:24588956-24588975 | MS.gene55032:intron | 15.0% |
| !! | ACTAGTCAATAATAATGTAT+TGG | - | chr7.2:24590157-24590176 | None:intergenic | 20.0% |
| !! | ATAGTGAAAAAAATCAATTG+AGG | - | chr7.2:24590025-24590044 | None:intergenic | 20.0% |
| !! | ATCATTCAATATGAATTCTA+AGG | + | chr7.2:24588798-24588817 | MS.gene55032:intron | 20.0% |
| !! | ATTAACTATGATGATTATGA+TGG | + | chr7.2:24589385-24589404 | MS.gene55032:CDS | 20.0% |
| !!! | ATGTTTTGATCTTATTTTCT+TGG | + | chr7.2:24589934-24589953 | MS.gene55032:intron | 20.0% |
| !!! | ATTTCCTTATTAAGTTTTAG+AGG | - | chr7.2:24590276-24590295 | None:intergenic | 20.0% |
| !!! | TCTAAAACTTAATAAGGAAA+TGG | + | chr7.2:24590275-24590294 | MS.gene55032:CDS | 20.0% |
| !!! | TTTAGGCTTAATTACATTTT+TGG | + | chr7.2:24590587-24590606 | MS.gene55032:intron | 20.0% |
| !!! | TTTTGCAAATTTTCATGATT+TGG | - | chr7.2:24589892-24589911 | None:intergenic | 20.0% |
| ! | ACAAGATCGATAAAAAAAAG+AGG | - | chr7.2:24588928-24588947 | None:intergenic | 25.0% |
| ! | AGATGATAAAATGGACATTA+TGG | + | chr7.2:24589474-24589493 | MS.gene55032:CDS | 25.0% |
| ! | ATAAGGAAATGGAAAACAAA+AGG | + | chr7.2:24590286-24590305 | MS.gene55032:CDS | 25.0% |
| ! | ATTCATCACATAGAAACAAT+AGG | - | chr7.2:24588851-24588870 | None:intergenic | 25.0% |
| ! | TTCTGATGAATTTGATTATC+CGG | + | chr7.2:24589669-24589688 | MS.gene55032:CDS | 25.0% |
| !! | ATAGGAATGTGATAGTTTTT+AGG | + | chr7.2:24590570-24590589 | MS.gene55032:intron | 25.0% |
| !! | TTCTTTGGAAGATGATAAAA+TGG | + | chr7.2:24589465-24589484 | MS.gene55032:CDS | 25.0% |
| !!! | AAAGCCTCTAAAACTTAATA+AGG | + | chr7.2:24590269-24590288 | MS.gene55032:CDS | 25.0% |
| !!! | TAGACTATATTTTGAAGTGT+CGG | - | chr7.2:24590471-24590490 | None:intergenic | 25.0% |
| AAAACTATCACATTCCTATG+AGG | - | chr7.2:24590569-24590588 | None:intergenic | 30.0% | |
| AAAACTGCAGGAATTTGTAA+AGG | + | chr7.2:24590206-24590225 | MS.gene55032:intron | 30.0% | |
| AAAGAATCTGAACTTCAAGA+AGG | + | chr7.2:24590378-24590397 | MS.gene55032:CDS | 30.0% | |
| AAGAATCTGAACTTCAAGAA+GGG | + | chr7.2:24590379-24590398 | MS.gene55032:CDS | 30.0% | |
| AGAAGAGGGTAAGTTTATTA+TGG | + | chr7.2:24589609-24589628 | MS.gene55032:CDS | 30.0% | |
| AGAGAAAAGGTTAAAGCAAA+TGG | + | chr7.2:24590761-24590780 | MS.gene55032:CDS | 30.0% | |
| ATAATAAACTTACCCTCTTC+TGG | - | chr7.2:24589610-24589629 | None:intergenic | 30.0% | |
| ATTTATTGGAGAGACAATGT+AGG | + | chr7.2:24590057-24590076 | MS.gene55032:intron | 30.0% | |
| CAAAATTCATGAAAAACTGC+AGG | + | chr7.2:24590194-24590213 | MS.gene55032:intron | 30.0% | |
| CAAAGCTATCTAACAACATA+TGG | - | chr7.2:24589051-24589070 | None:intergenic | 30.0% | |
| CGAATTAACTTATGAAGTAC+TGG | - | chr7.2:24590536-24590555 | None:intergenic | 30.0% | |
| CTAAATCGATAGTTTATTCC+CGG | - | chr7.2:24589726-24589745 | None:intergenic | 30.0% | |
| GAAAGAAACATTCCTTACTT+GGG | + | chr7.2:24589250-24589269 | MS.gene55032:CDS | 30.0% | |
| GAAGAGGGTAAGTTTATTAT+GGG | + | chr7.2:24589610-24589629 | MS.gene55032:CDS | 30.0% | |
| GAGAAAAGGTTAAAGCAAAT+GGG | + | chr7.2:24590762-24590781 | MS.gene55032:CDS | 30.0% | |
| GGATTTATGTGAAATGTTGA+TGG | - | chr7.2:24590676-24590695 | None:intergenic | 30.0% | |
| GGTACTTTATATCAAGACAT+AGG | + | chr7.2:24589313-24589332 | MS.gene55032:CDS | 30.0% | |
| GTTAATAGCTATCATCATCA+AGG | + | chr7.2:24589496-24589515 | MS.gene55032:CDS | 30.0% | |
| GTTTCTTTCAAGACAAAGTT+TGG | - | chr7.2:24589239-24589258 | None:intergenic | 30.0% | |
| TAGAAACTATTAGAACACGA+GGG | - | chr7.2:24588697-24588716 | None:intergenic | 30.0% | |
| TATCACCTTGATCTTATAGT+CGG | + | chr7.2:24588983-24589002 | MS.gene55032:CDS | 30.0% | |
| TCTGATGAATTTGATTATCC+GGG | + | chr7.2:24589670-24589689 | MS.gene55032:CDS | 30.0% | |
| TCTTCATCTACTTGATTATG+TGG | + | chr7.2:24588870-24588889 | MS.gene55032:intron | 30.0% | |
| TGAAAGAAACATTCCTTACT+TGG | + | chr7.2:24589249-24589268 | MS.gene55032:CDS | 30.0% | |
| TTCTTGAAGTTCAGATTCTT+TGG | - | chr7.2:24590379-24590398 | None:intergenic | 30.0% | |
| TTGTCTTTCTATCACACTAT+GGG | + | chr7.2:24590900-24590919 | MS.gene55032:CDS | 30.0% | |
| ! | TTTATGTGAAATGTTGATGG+AGG | - | chr7.2:24590673-24590692 | None:intergenic | 30.0% |
| !!! | AACAAGTTCGTTGATTTTGT+TGG | + | chr7.2:24588734-24588753 | MS.gene55032:CDS | 30.0% |
| !!! | ACAGATTTGTTCTGAAGTTT+TGG | + | chr7.2:24590923-24590942 | MS.gene55032:CDS | 30.0% |
| AAAATACACCTTTGCACCAT+TGG | + | chr7.2:24589434-24589453 | MS.gene55032:CDS | 35.0% | |
| AGAATCTGAACTTCAAGAAG+GGG | + | chr7.2:24590380-24590399 | MS.gene55032:CDS | 35.0% | |
| AGGAAAAGAGCTTTCAAACA+AGG | + | chr7.2:24589333-24589352 | MS.gene55032:CDS | 35.0% | |
| CCAAAGAATCCTTAAACCAA+TGG | - | chr7.2:24589453-24589472 | None:intergenic | 35.0% | |
| CGAATTACCTGATAAGCAAA+GGG | - | chr7.2:24589700-24589719 | None:intergenic | 35.0% | |
| CGATACTGACATTACATGTT+CGG | - | chr7.2:24590498-24590517 | None:intergenic | 35.0% | |
| CTAGAAACTATTAGAACACG+AGG | - | chr7.2:24588698-24588717 | None:intergenic | 35.0% | |
| CTTACTTGGGAATTTGTAGA+GGG | + | chr7.2:24589263-24589282 | MS.gene55032:CDS | 35.0% | |
| CTTATCAGGTAATTCGAAAC+CGG | + | chr7.2:24589704-24589723 | MS.gene55032:intron | 35.0% | |
| CTTCTGGATTATAAGCATCA+GGG | - | chr7.2:24589594-24589613 | None:intergenic | 35.0% | |
| CTTGTCTTTCTATCACACTA+TGG | + | chr7.2:24590899-24590918 | MS.gene55032:CDS | 35.0% | |
| GAATGAGGAAAGGGAAAAAA+TGG | + | chr7.2:24590830-24590849 | MS.gene55032:CDS | 35.0% | |
| GAATTACCTGATAAGCAAAG+GGG | - | chr7.2:24589699-24589718 | None:intergenic | 35.0% | |
| GATGCTTATAATCCAGAAGA+GGG | + | chr7.2:24589595-24589614 | MS.gene55032:CDS | 35.0% | |
| GGAAAAGAGCTTTCAAACAA+GGG | + | chr7.2:24589334-24589353 | MS.gene55032:CDS | 35.0% | |
| TCGAATTACCTGATAAGCAA+AGG | - | chr7.2:24589701-24589720 | None:intergenic | 35.0% | |
| TCGTTTCTTTATAGTCCTAC+TGG | + | chr7.2:24589832-24589851 | MS.gene55032:intron | 35.0% | |
| TCTTCTGGATTATAAGCATC+AGG | - | chr7.2:24589595-24589614 | None:intergenic | 35.0% | |
| TGATGCTTATAATCCAGAAG+AGG | + | chr7.2:24589594-24589613 | MS.gene55032:CDS | 35.0% | |
| TGGAACCATAGTCAAAGAAA+CGG | + | chr7.2:24589852-24589871 | MS.gene55032:intron | 35.0% | |
| TGTAATGTCAGTATCGTGTT+CGG | + | chr7.2:24590502-24590521 | MS.gene55032:intron | 35.0% | |
| TTATCAGGTAATTCGAAACC+GGG | + | chr7.2:24589705-24589724 | MS.gene55032:intron | 35.0% | |
| TTATGATGGTCATAGACATG+AGG | + | chr7.2:24589399-24589418 | MS.gene55032:CDS | 35.0% | |
| TTGAAGTTCAGATTCTTTGG+TGG | - | chr7.2:24590376-24590395 | None:intergenic | 35.0% | |
| ! | AAAAATGGCAAGAAGTGTGA+TGG | + | chr7.2:24590845-24590864 | MS.gene55032:CDS | 35.0% |
| ! | AAAATGGCAAGAAGTGTGAT+GGG | + | chr7.2:24590846-24590865 | MS.gene55032:CDS | 35.0% |
| ! | TGTGATGGGAAAAATGTCAA+TGG | + | chr7.2:24590860-24590879 | MS.gene55032:CDS | 35.0% |
| !! | CCATTGGTTTAAGGATTCTT+TGG | + | chr7.2:24589450-24589469 | MS.gene55032:CDS | 35.0% |
| AACCCTTCAATCAAACCATC+AGG | - | chr7.2:24589565-24589584 | None:intergenic | 40.0% | |
| ACTGAAGCAGAATGAGGAAA+GGG | + | chr7.2:24590821-24590840 | MS.gene55032:CDS | 40.0% | |
| ATCTAACAACATATGGACCC+CGG | - | chr7.2:24589044-24589063 | None:intergenic | 40.0% | |
| CACATCATGTCTTTCTCAAG+AGG | + | chr7.2:24589135-24589154 | MS.gene55032:CDS | 40.0% | |
| CATAGAAGAACACCATGGAT+TGG | - | chr7.2:24589076-24589095 | None:intergenic | 40.0% | |
| CATAGCCGACTATAAGATCA+AGG | - | chr7.2:24588991-24589010 | None:intergenic | 40.0% | |
| CATGGTGTTCTTCTATGTGA+AGG | + | chr7.2:24589079-24589098 | MS.gene55032:CDS | 40.0% | |
| CCTCTACAAATTCCCAAGTA+AGG | - | chr7.2:24589265-24589284 | None:intergenic | 40.0% | |
| CCTTACTTGGGAATTTGTAG+AGG | + | chr7.2:24589262-24589281 | MS.gene55032:CDS | 40.0% | |
| CTCCTGATGGTTTGATTGAA+GGG | + | chr7.2:24589560-24589579 | MS.gene55032:CDS | 40.0% | |
| CTTCACATAGAAGAACACCA+TGG | - | chr7.2:24589081-24589100 | None:intergenic | 40.0% | |
| CTTGATCTTATAGTCGGCTA+TGG | + | chr7.2:24588989-24589008 | MS.gene55032:CDS | 40.0% | |
| GAGAAGACATTGATCCATCA+TGG | + | chr7.2:24589101-24589120 | MS.gene55032:CDS | 40.0% | |
| GAGAGACAATGTAGGAGAAA+TGG | + | chr7.2:24590065-24590084 | MS.gene55032:intron | 40.0% | |
| GCAAAAGACCTCTACAATCA+TGG | + | chr7.2:24590336-24590355 | MS.gene55032:CDS | 40.0% | |
| GGAACCATAGTCAAAGAAAC+GGG | + | chr7.2:24589853-24589872 | MS.gene55032:intron | 40.0% | |
| GGGTTTAGAAGAGAGTGAAA+TGG | + | chr7.2:24589354-24589373 | MS.gene55032:CDS | 40.0% | |
| TCCTTAAACCAATGGTGCAA+AGG | - | chr7.2:24589445-24589464 | None:intergenic | 40.0% | |
| TCTCCTGATGGTTTGATTGA+AGG | + | chr7.2:24589559-24589578 | MS.gene55032:CDS | 40.0% | |
| TCTTTGACTATGGTTCCAGT+AGG | - | chr7.2:24589850-24589869 | None:intergenic | 40.0% | |
| ! | AACGAACTTGTTCTTGCGAA+GGG | - | chr7.2:24588726-24588745 | None:intergenic | 40.0% |
| ! | ATCAGCTTTTCTCATACGCT+CGG | - | chr7.2:24589650-24589669 | None:intergenic | 40.0% |
| ! | CAGTTGTTGCTTATCAGAAG+AGG | + | chr7.2:24590229-24590248 | MS.gene55032:CDS | 40.0% |
| !! | ACCTTTGCACCATTGGTTTA+AGG | + | chr7.2:24589441-24589460 | MS.gene55032:CDS | 40.0% |
| !! | GATAGCTTTGAACCAATCCA+TGG | + | chr7.2:24589061-24589080 | MS.gene55032:CDS | 40.0% |
| !! | TGCACAACGTTTTGTTCCAA+TGG | + | chr7.2:24589531-24589550 | MS.gene55032:CDS | 40.0% |
| !! | TTTTAGAGGCTTTTGCACAG+AGG | - | chr7.2:24590262-24590281 | None:intergenic | 40.0% |
| AGAGAGACTGAAGCAGAATG+AGG | + | chr7.2:24590815-24590834 | MS.gene55032:CDS | 45.0% | |
| AGCAAATGGGTGCAACAGTT+AGG | + | chr7.2:24590775-24590794 | MS.gene55032:CDS | 45.0% | |
| AGGGTCACAACTCCTAAATG+TGG | + | chr7.2:24589282-24589301 | MS.gene55032:CDS | 45.0% | |
| CAACTCCTAAATGTGGCATG+TGG | + | chr7.2:24589289-24589308 | MS.gene55032:CDS | 45.0% | |
| CAAGCCCGTTTCTTTGACTA+TGG | - | chr7.2:24589860-24589879 | None:intergenic | 45.0% | |
| CATTGATCCATCATGGTACG+AGG | + | chr7.2:24589108-24589127 | MS.gene55032:CDS | 45.0% | |
| CCATCAGGAGAAAAAGCCAT+TGG | - | chr7.2:24589550-24589569 | None:intergenic | 45.0% | |
| GAAACACGTGGAACTATGAC+CGG | - | chr7.2:24589022-24589041 | None:intergenic | 45.0% | |
| GACTGAAGCAGAATGAGGAA+AGG | + | chr7.2:24590820-24590839 | MS.gene55032:CDS | 45.0% | |
| GAGTACTAGACAGAGTCTTC+TGG | + | chr7.2:24589959-24589978 | MS.gene55032:intron | 45.0% | |
| GTCATAGTTCCACGTGTTTC+CGG | + | chr7.2:24589022-24589041 | MS.gene55032:CDS | 45.0% | |
| TACCAAGGCCATGATTGTAG+AGG | - | chr7.2:24590347-24590366 | None:intergenic | 45.0% | |
| TACCTCCACATGCCACATTT+AGG | - | chr7.2:24589297-24589316 | None:intergenic | 45.0% | |
| TCATAGTTCCACGTGTTTCC+GGG | + | chr7.2:24589023-24589042 | MS.gene55032:CDS | 45.0% | |
| TGAGTGTGCAGCAAGAGAAA+AGG | + | chr7.2:24590748-24590767 | MS.gene55032:CDS | 45.0% | |
| TTCGTGATGTGCTACCTCAT+AGG | + | chr7.2:24590552-24590571 | MS.gene55032:intron | 45.0% | |
| TTTCTCTTGCTGCACACTCA+AGG | - | chr7.2:24590748-24590767 | None:intergenic | 45.0% | |
| ! | CAACGAACTTGTTCTTGCGA+AGG | - | chr7.2:24588727-24588746 | None:intergenic | 45.0% |
| ! | TCAGCTTTTCTCATACGCTC+GGG | - | chr7.2:24589649-24589668 | None:intergenic | 45.0% |
| !! | CCAATGGCTTTTTCTCCTGA+TGG | + | chr7.2:24589547-24589566 | MS.gene55032:CDS | 45.0% |
| CATAGTTCCACGTGTTTCCG+GGG | + | chr7.2:24589024-24589043 | MS.gene55032:CDS | 50.0% | |
| CTCCTAAATGTGGCATGTGG+AGG | + | chr7.2:24589292-24589311 | MS.gene55032:CDS | 50.0% | |
| CTTTGGTGGAACTCGTACCA+AGG | - | chr7.2:24590362-24590381 | None:intergenic | 50.0% | |
| GACCTCTACAATCATGGCCT+TGG | + | chr7.2:24590342-24590361 | MS.gene55032:CDS | 50.0% | |
| GGTGCAACAGTTAGGAATGC+AGG | + | chr7.2:24590783-24590802 | MS.gene55032:CDS | 50.0% | |
| GTGTCTTCCTCGTACCATGA+TGG | - | chr7.2:24589118-24589137 | None:intergenic | 50.0% | |
| TAGAACACGAGGGAGAATGC+CGG | - | chr7.2:24588687-24588706 | None:intergenic | 50.0% | |
| TCTTATAGTCGGCTATGGCG+CGG | + | chr7.2:24588994-24589013 | MS.gene55032:CDS | 50.0% | |
| ! | AGAAGGGGCAGAGTTTCTAG+AGG | + | chr7.2:24590395-24590414 | MS.gene55032:CDS | 50.0% |
| !! | TGATAAGCAAAGGGGCATCC+CGG | - | chr7.2:24589691-24589710 | None:intergenic | 50.0% |
| AGGGAGAATGCCGGATAGGT+CGG | - | chr7.2:24588678-24588697 | None:intergenic | 55.0% | |
| ATATGGACCCCGGAAACACG+TGG | - | chr7.2:24589034-24589053 | None:intergenic | 55.0% | |
| GGGATGCCCCTTTGCTTATC+AGG | + | chr7.2:24589690-24589709 | MS.gene55032:CDS | 55.0% | |
| CACGAGGGAGAATGCCGGAT+AGG | - | chr7.2:24588682-24588701 | None:intergenic | 60.0% | |
| AGTCGGCTATGGCGCGGTAC+CGG | + | chr7.2:24589000-24589019 | MS.gene55032:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 24588668 | 24590986 | 24588668 | ID=MS.gene55032 |
| chr7.2 | mRNA | 24588668 | 24590986 | 24588668 | ID=MS.gene55032.t1;Parent=MS.gene55032 |
| chr7.2 | exon | 24588668 | 24588755 | 24588668 | ID=MS.gene55032.t1.exon1;Parent=MS.gene55032.t1 |
| chr7.2 | CDS | 24588668 | 24588755 | 24588668 | ID=cds.MS.gene55032.t1;Parent=MS.gene55032.t1 |
| chr7.2 | exon | 24588978 | 24589711 | 24588978 | ID=MS.gene55032.t1.exon2;Parent=MS.gene55032.t1 |
| chr7.2 | CDS | 24588978 | 24589711 | 24588978 | ID=cds.MS.gene55032.t1;Parent=MS.gene55032.t1 |
| chr7.2 | exon | 24590216 | 24590416 | 24590216 | ID=MS.gene55032.t1.exon3;Parent=MS.gene55032.t1 |
| chr7.2 | CDS | 24590216 | 24590416 | 24590216 | ID=cds.MS.gene55032.t1;Parent=MS.gene55032.t1 |
| chr7.2 | exon | 24590735 | 24590986 | 24590735 | ID=MS.gene55032.t1.exon4;Parent=MS.gene55032.t1 |
| chr7.2 | CDS | 24590735 | 24590986 | 24590735 | ID=cds.MS.gene55032.t1;Parent=MS.gene55032.t1 |
| Gene Sequence |
| Protein sequence |
