AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55092

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55092.t1 MTR_2g038380 93.503 354 20 1 1 354 1 351 0.0 644
MS.gene55092.t1 MTR_4g127120 67.135 356 94 5 1 352 2 338 2.65e-162 457
MS.gene55092.t1 MTR_4g105010 47.303 241 126 1 47 287 208 447 8.95e-59 198
MS.gene55092.t1 MTR_4g105010 30.061 163 111 2 43 203 273 434 1.04e-11 66.2
MS.gene55092.t1 MTR_3g076990 45.528 246 130 2 42 287 203 444 3.08e-55 189
MS.gene55092.t1 MTR_5g032910 43.952 248 138 1 40 287 148 394 4.40e-50 174
MS.gene55092.t1 MTR_5g024780 40.167 239 141 2 47 285 305 541 1.17e-42 156
MS.gene55092.t1 MTR_5g024780 40.351 171 99 2 99 269 264 431 3.88e-27 112
MS.gene55092.t1 MTR_8g072950 39.773 264 152 3 47 305 294 555 2.72e-42 155
MS.gene55092.t1 MTR_4g098530 38.346 266 139 3 44 286 198 461 1.39e-40 149
MS.gene55092.t1 MTR_4g098530 37.356 174 106 2 99 272 183 353 7.37e-23 99.8
MS.gene55092.t1 MTR_8g062130 35.294 187 117 4 75 260 776 959 9.04e-18 85.5
MS.gene55092.t1 MTR_8g062130 33.173 208 134 5 80 286 828 1031 1.53e-15 78.6
MS.gene55092.t1 MTR_8g062130 32.178 202 121 7 47 235 887 1085 9.47e-11 63.9
MS.gene55092.t1 MTR_8g062140 36.916 214 119 9 54 264 770 970 1.93e-16 81.3
MS.gene55092.t1 MTR_8g062140 36.441 236 110 10 51 260 698 919 6.80e-14 73.6
MS.gene55092.t1 MTR_8g062140 32.984 191 122 6 75 263 688 874 3.43e-12 68.2
MS.gene55092.t1 MTR_3g023830 30.804 224 124 6 46 266 24 219 1.40e-15 76.3
MS.gene55092.t1 MTR_3g023830 27.586 203 121 3 72 274 27 203 4.40e-14 72.0
MS.gene55092.t1 MTR_1g038890 29.740 269 170 13 56 310 237 500 2.46e-15 77.8
MS.gene55092.t1 MTR_1g038890 29.018 224 145 8 49 267 94 308 1.42e-12 69.3
MS.gene55092.t1 MTR_1g038890 29.960 247 162 10 57 296 190 432 2.18e-11 65.9
MS.gene55092.t1 MTR_2g079560 31.280 211 140 5 63 272 114 320 3.20e-15 77.4
MS.gene55092.t1 MTR_2g079560 25.725 276 166 6 26 288 378 627 5.28e-14 73.6
MS.gene55092.t1 MTR_8g047220 36.620 213 122 12 70 273 166 374 3.30e-15 77.4
MS.gene55092.t1 MTR_8g047220 32.227 211 103 8 82 263 116 315 2.60e-11 65.5
MS.gene55092.t1 MTR_8g047220 31.304 230 141 11 57 272 201 427 7.66e-11 63.9
MS.gene55092.t1 MTR_2g079560 31.280 211 140 5 63 272 67 273 1.01e-14 75.9
MS.gene55092.t1 MTR_2g079560 25.725 276 166 6 26 288 331 580 1.05e-13 72.8
MS.gene55092.t1 MTR_2g079560 31.280 211 140 5 63 272 67 273 1.08e-14 75.5
MS.gene55092.t1 MTR_2g079560 27.347 245 149 5 47 288 364 582 2.24e-13 71.6
MS.gene55092.t1 MTR_4g028090 35.071 211 126 11 70 272 150 357 3.69e-14 74.3
MS.gene55092.t1 MTR_1g040615 34.951 206 124 10 70 268 126 328 6.38e-14 73.9
MS.gene55092.t1 MTR_8g047230 36.792 212 124 10 63 267 254 462 9.19e-14 73.2
MS.gene55092.t1 MTR_8g047230 32.927 246 131 12 56 269 127 370 2.52e-13 71.6
MS.gene55092.t1 MTR_2g079560 27.347 245 149 5 47 288 339 557 1.06e-13 72.4
MS.gene55092.t1 MTR_2g079560 31.383 188 125 4 86 272 64 248 2.08e-12 68.6
MS.gene55092.t1 MTR_6g038760 30.078 256 161 10 21 267 58 304 1.35e-13 71.6
MS.gene55092.t1 MTR_1g040545 34.314 204 124 10 70 266 126 326 1.61e-13 72.4
MS.gene55092.t1 MTR_1g097580 33.632 223 137 10 52 266 79 298 1.73e-13 72.4
MS.gene55092.t1 MTR_7g007560 36.022 186 107 8 90 267 90 271 1.96e-13 72.0
MS.gene55092.t1 MTR_1g039220 31.963 219 141 8 56 268 213 429 3.58e-13 71.2
MS.gene55092.t1 MTR_1g039220 31.905 210 135 8 64 267 101 308 1.22e-11 66.6
MS.gene55092.t1 MTR_7g045860 31.707 287 135 13 67 295 76 359 7.67e-13 70.5
MS.gene55092.t1 MTR_4g130390 31.925 213 132 8 67 267 350 561 1.39e-12 69.3
MS.gene55092.t1 MTR_5g096340 38.365 159 90 8 63 215 281 437 2.36e-12 68.9
MS.gene55092.t1 MTR_2g450870 31.707 246 127 10 60 267 261 503 3.08e-12 68.6
MS.gene55092.t1 MTR_8g047210 34.101 217 126 11 70 272 151 364 3.85e-12 68.2
MS.gene55092.t1 MTR_8g047210 32.432 222 109 9 82 273 101 311 5.13e-12 67.8
MS.gene55092.t1 MTR_1g101250 26.159 302 184 8 19 284 405 703 4.04e-12 68.2
MS.gene55092.t1 MTR_3g465570 29.064 203 134 5 73 269 136 334 5.33e-12 67.0
MS.gene55092.t1 MTR_7g010000 35.514 214 124 11 63 267 133 341 1.00e-11 66.6
MS.gene55092.t1 MTR_2g437730 32.850 207 128 11 69 267 505 708 1.19e-11 66.6
MS.gene55092.t1 MTR_2g017495 31.200 250 150 12 36 265 432 679 1.21e-11 66.6
MS.gene55092.t1 MTR_8g469830 36.076 158 95 6 63 215 271 427 1.34e-11 66.2
MS.gene55092.t1 MTR_8g041100 39.355 155 87 7 67 215 206 359 1.51e-11 66.2
MS.gene55092.t1 MTR_1g102500 32.407 216 136 9 57 265 316 528 1.52e-11 66.2
MS.gene55092.t1 MTR_1g039240 35.052 194 117 9 67 254 586 776 1.60e-11 66.2
MS.gene55092.t1 MTR_1g039240 30.088 226 148 10 50 268 305 527 2.02e-11 65.9
MS.gene55092.t1 MTR_7g067530 31.797 217 139 9 56 265 371 585 2.04e-11 65.9
MS.gene55092.t1 MTR_0491s0020 30.804 224 138 11 63 272 183 403 2.59e-11 65.1
MS.gene55092.t1 MTR_0491s0020 34.518 197 112 9 82 272 116 301 6.61e-11 63.5
MS.gene55092.t1 MTR_0491s0020 30.418 263 147 12 20 273 115 350 9.48e-11 63.2
MS.gene55092.t1 MTR_3g093930 30.769 221 139 9 56 265 269 486 2.63e-11 65.5
MS.gene55092.t1 MTR_7g073290 31.963 219 135 8 57 265 337 551 3.22e-11 65.1
MS.gene55092.t1 MTR_5g085700 33.014 209 113 8 63 268 132 316 3.32e-11 65.1
MS.gene55092.t1 MTR_3g030980 41.176 102 58 2 160 260 577 677 3.84e-11 65.1
MS.gene55092.t1 MTR_1g039310 34.536 194 118 9 67 254 583 773 3.85e-11 65.1
MS.gene55092.t1 MTR_3g033240 45.349 86 46 1 174 259 595 679 5.51e-11 64.7
MS.gene55092.t1 MTR_7g045510 30.450 289 139 14 67 296 85 370 5.56e-11 64.7
MS.gene55092.t1 MTR_7g007630 35.870 184 110 8 90 267 110 291 6.13e-11 64.3
MS.gene55092.t1 MTR_2g072610 30.348 201 124 9 80 267 265 462 6.59e-11 63.9
MS.gene55092.t1 MTR_0491s0030 34.884 215 130 10 56 263 100 311 6.88e-11 64.3
MS.gene55092.t1 MTR_6g036870 29.319 191 126 8 90 273 272 460 7.52e-11 63.9
MS.gene55092.t1 MTR_1g040575 32.759 232 145 11 43 266 211 439 8.52e-11 63.9
MS.gene55092.t1 MTR_2g070020 31.646 237 136 11 67 293 509 729 9.12e-11 63.9
MS.gene55092.t1 MTR_1g100787 27.829 327 193 13 1 288 567 889 9.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55092.t1 AT2G19330 64.465 318 108 2 40 352 58 375 1.33e-140 404
MS.gene55092.t1 AT4G29880 62.264 318 115 2 40 352 51 368 1.18e-126 368
MS.gene55092.t1 AT4G26050 60.976 328 118 5 34 351 46 373 5.83e-125 364
MS.gene55092.t1 AT3G11330 49.180 244 123 1 44 287 200 442 2.73e-58 196
MS.gene55092.t1 AT3G11330 32.298 161 106 2 43 201 268 427 7.42e-12 67.0
MS.gene55092.t1 AT5G05850 48.400 250 128 1 41 290 203 451 3.25e-57 194
MS.gene55092.t1 AT3G26500 40.856 257 139 2 44 300 162 405 1.44e-51 178
MS.gene55092.t1 AT1G12970 40.467 257 140 2 44 300 163 406 4.14e-49 171
MS.gene55092.t1 AT4G35470 38.168 262 157 3 47 305 274 533 1.19e-42 155
MS.gene55092.t1 AT4G35470 39.196 199 107 3 98 285 232 427 1.06e-22 99.8
MS.gene55092.t1 AT2G17440 39.924 263 152 3 47 305 258 518 6.58e-40 148
MS.gene55092.t1 AT4G35470 40.171 234 138 2 47 280 274 505 1.18e-39 147
MS.gene55092.t1 AT4G35470 39.196 199 107 3 98 285 232 427 1.28e-22 99.4
MS.gene55092.t1 AT4G35470 33.143 175 113 3 43 215 316 488 3.42e-16 80.1
MS.gene55092.t1 AT3G15410 35.071 211 128 5 63 270 66 270 1.98e-18 87.0
MS.gene55092.t1 AT3G15410 35.122 205 128 4 69 272 49 249 8.45e-18 85.1
MS.gene55092.t1 AT3G15410 28.723 282 166 6 46 298 72 347 5.20e-16 79.7
MS.gene55092.t1 AT3G15410 24.113 282 175 6 20 288 326 581 3.03e-14 74.3
MS.gene55092.t1 AT3G15410 35.071 211 128 5 63 270 72 276 2.27e-18 86.7
MS.gene55092.t1 AT3G15410 35.122 205 128 4 69 272 55 255 9.34e-18 85.1
MS.gene55092.t1 AT3G15410 28.723 282 166 6 46 298 78 353 5.48e-16 79.7
MS.gene55092.t1 AT3G15410 24.113 282 175 6 20 288 332 587 2.67e-14 74.3
MS.gene55092.t1 AT2G30105 33.684 190 110 5 101 278 141 326 1.14e-15 77.8
MS.gene55092.t1 AT2G30105 41.964 112 63 2 70 181 207 316 8.92e-15 75.1
MS.gene55092.t1 AT2G34930 34.199 231 135 10 47 263 204 431 4.80e-15 77.0
MS.gene55092.t1 AT1G27170 30.093 216 121 6 69 258 769 980 3.14e-14 74.7
MS.gene55092.t1 AT1G27170 30.698 215 121 5 69 258 769 980 4.20e-14 74.3
MS.gene55092.t1 AT4G28490 33.486 218 128 12 45 247 87 302 7.28e-14 73.6
MS.gene55092.t1 AT5G07910 27.586 232 137 6 46 274 25 228 1.38e-13 70.5
MS.gene55092.t1 AT3G56370 33.721 258 134 11 42 265 69 323 2.11e-13 72.0
MS.gene55092.t1 AT3G56370 32.365 241 146 9 32 263 226 458 6.32e-13 70.5
MS.gene55092.t1 AT2G15080 33.632 223 132 12 53 267 104 318 2.18e-13 72.0
MS.gene55092.t1 AT2G15080 33.632 223 132 12 53 267 104 318 2.18e-13 72.0
MS.gene55092.t1 AT2G33170 32.710 214 135 9 66 272 86 297 2.24e-13 72.0
MS.gene55092.t1 AT2G33170 32.710 214 135 9 66 272 86 297 2.24e-13 72.0
MS.gene55092.t1 AT1G69550 39.171 217 121 11 53 262 920 1132 2.62e-13 72.0
MS.gene55092.t1 AT1G69550 38.660 194 110 9 75 262 871 1061 3.66e-13 71.2
MS.gene55092.t1 AT1G69550 38.739 222 124 11 47 260 985 1202 1.93e-12 69.3
MS.gene55092.t1 AT1G69550 31.600 250 138 9 44 262 742 989 6.70e-11 64.3
MS.gene55092.t1 AT4G13920 31.034 203 129 9 65 258 79 279 1.54e-12 69.3
MS.gene55092.t1 AT3G24240 35.945 217 129 10 56 265 289 502 1.58e-12 69.3
MS.gene55092.t1 AT3G11080 34.783 184 92 7 87 266 123 282 1.73e-12 69.3
MS.gene55092.t1 AT3G11080 34.783 184 92 7 87 266 123 282 1.73e-12 69.3
MS.gene55092.t1 AT5G44700 33.333 231 142 11 44 265 266 493 1.90e-12 69.3
MS.gene55092.t1 AT4G04220 32.937 252 145 12 28 263 67 310 2.87e-12 68.6
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 945 1154 2.94e-12 68.6
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 783 992 3.18e-12 68.6
MS.gene55092.t1 AT1G27180 30.631 222 144 7 49 265 830 1046 2.98e-11 65.5
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 783 992 3.33e-12 68.6
MS.gene55092.t1 AT5G07180 33.803 213 132 9 67 273 75 284 3.43e-12 68.2
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 781 990 4.47e-12 68.2
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 781 990 4.47e-12 68.2
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 607 816 5.74e-12 67.8
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 607 816 5.74e-12 67.8
MS.gene55092.t1 AT1G27180 29.577 213 144 6 49 258 607 816 5.74e-12 67.8
MS.gene55092.t1 AT5G46330 33.473 239 119 12 67 268 164 399 1.65e-11 66.2
MS.gene55092.t1 AT5G46330 33.473 239 119 12 67 268 164 399 1.65e-11 66.2
MS.gene55092.t1 AT3G11010 32.189 233 145 10 39 265 61 286 1.88e-11 65.9
MS.gene55092.t1 AT3G11010 32.189 233 145 10 39 265 124 349 1.93e-11 65.9
MS.gene55092.t1 AT3G47570 32.927 246 154 11 91 328 338 580 3.11e-11 65.5
MS.gene55092.t1 AT4G20140 30.435 230 125 11 70 267 580 806 7.63e-11 64.3
MS.gene55092.t1 AT5G62230 32.864 213 134 9 67 273 73 282 7.72e-11 63.9
MS.gene55092.t1 AT5G17680 26.587 252 145 6 45 260 761 1008 8.55e-11 63.9
MS.gene55092.t1 AT5G17680 26.587 252 145 6 45 260 762 1009 8.70e-11 63.9
MS.gene55092.t1 AT3G51740 31.140 228 123 11 86 282 115 339 9.54e-11 63.9
MS.gene55092.t1 AT2G24130 34.247 219 134 10 57 267 337 553 9.75e-11 63.9

Find 112 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTCTGACTCACATTT+AGG 0.163400 2.2:+49191958 None:intergenic
CACCATCCACCATCTCTTCT+TGG 0.191377 2.2:+49191698 None:intergenic
TTCCCTCCACGCTTAGCTTT+TGG 0.217550 2.2:+49191820 None:intergenic
GTTGAGATTCAGTTCTTCTA+AGG 0.278250 2.2:+49192178 None:intergenic
TTTGTCTCCCTCTTCCTTGT+TGG 0.292650 2.2:+49194892 None:intergenic
TAAATGTGAGTCAGAATTTC+CGG 0.300900 2.2:-49191956 MS.gene55092:CDS
CAATGGTTGTTGGGAGGGAT+TGG 0.307852 2.2:+49193924 None:intergenic
CAACAACCATTGAGAATTGC+AGG 0.312861 2.2:-49193913 MS.gene55092:intron
AGAGAGACAACCAATGGAAT+TGG 0.315520 2.2:+49193982 None:intergenic
GAAATTCTGACTCACATTTA+GGG 0.316541 2.2:+49191959 None:intergenic
TCTTGCTTCACCAGGCTTCA+TGG 0.336493 2.2:-49191586 MS.gene55092:CDS
CGACGCCGACGGAGGAAGAT+AGG 0.344483 2.2:-49194855 MS.gene55092:CDS
CTTGCTTCACCAGGCTTCAT+GGG 0.358409 2.2:-49191585 MS.gene55092:CDS
TCCACTGGAGGTGGTGGAGC+AGG 0.362764 2.2:-49191781 MS.gene55092:CDS
CCCGCTCAGTTCGCCTCCAC+TGG 0.372267 2.2:-49191796 MS.gene55092:CDS
CTCAAAGCTTTGAATGTCTC+TGG 0.381783 2.2:-49193956 MS.gene55092:CDS
TCTTCTTGGTTGGGATATGA+TGG 0.383328 2.2:+49191712 None:intergenic
GCTAAATCAAGAGAAAGTTT+AGG 0.388906 2.2:+49194790 None:intergenic
CTCTCACATGATGACTCTTA+TGG 0.393115 2.2:-49192051 MS.gene55092:CDS
ATCCACCATCTCTTCTTGGT+TGG 0.393964 2.2:+49191702 None:intergenic
ATTATTAAACTTGGAGATGT+TGG 0.403539 2.2:-49194035 MS.gene55092:CDS
GGACTTGCATGGCATGTCCT+TGG 0.409480 2.2:-49194821 MS.gene55092:CDS
ACTTATCATGTCTCCATTGA+AGG 0.410083 2.2:+49191665 None:intergenic
TGCAATTCTCAATGGTTGTT+GGG 0.412842 2.2:+49193915 None:intergenic
CTGCAATTCTCAATGGTTGT+TGG 0.412937 2.2:+49193914 None:intergenic
TGGTGAAGCAAGACCATTCA+TGG 0.416329 2.2:+49191596 None:intergenic
TTCGCCTCCACTGGAGGTGG+TGG 0.417968 2.2:-49191787 MS.gene55092:CDS
TCCACCATCTCTTCTTGGTT+GGG 0.419645 2.2:+49191703 None:intergenic
GAGTCAGAATTTCCGGTACT+TGG 0.428594 2.2:-49191949 MS.gene55092:CDS
ACGAGGTTCTCAAGGTCGTC+GGG 0.432286 2.2:+49191993 None:intergenic
AGCTCAAAGCCTATTGTGTC+TGG 0.435730 2.2:+49192134 None:intergenic
TGGGAAACGATCAGAACATA+AGG 0.438511 2.2:-49191643 MS.gene55092:CDS
GAGAGACAACCAATGGAATT+GGG 0.443595 2.2:+49193983 None:intergenic
CTTCACCAGGCTTCATGGGG+AGG 0.443666 2.2:-49191581 MS.gene55092:CDS
TTCAATGGAGACATGATAAG+TGG 0.444496 2.2:-49191663 MS.gene55092:CDS
AGCAAACTTCCAGACACAAT+AGG 0.451995 2.2:-49192143 MS.gene55092:CDS
AACGGCAAGATTATTAAACT+TGG 0.472327 2.2:-49194044 MS.gene55092:CDS
CCACTGGAGGTGGTGGAGCA+GGG 0.480559 2.2:-49191780 MS.gene55092:CDS
ATTCTCAATGGTTGTTGGGA+GGG 0.485167 2.2:+49193919 None:intergenic
TGGAGGCATCCGATGGAGTC+GGG 0.485570 2.2:+49191849 None:intergenic
AGGAAGACACACAAGTTTGT+TGG 0.489389 2.2:+49192082 None:intergenic
GACAACCTCCCCATGAAGCC+TGG 0.490735 2.2:+49191576 None:intergenic
CCAGTGGAGGCGAACTGAGC+GGG 0.492506 2.2:+49191796 None:intergenic
CTGGAGGCATCCGATGGAGT+CGG 0.492595 2.2:+49191848 None:intergenic
GAACATACCGGAGTCATTAA+CGG 0.493750 2.2:-49194062 MS.gene55092:CDS
GTGAAATGTGGGACCTTCAA+TGG 0.499860 2.2:-49191678 MS.gene55092:CDS
CAGTTCGCCTCCACTGGAGG+TGG 0.507058 2.2:-49191790 MS.gene55092:CDS
AATAAACCTGCAATTCTCAA+TGG 0.511036 2.2:+49193907 None:intergenic
CAAGATTGACGAGGTTCTCA+AGG 0.516518 2.2:+49191985 None:intergenic
TCATCAGATGACAATGAAGA+TGG 0.519446 2.2:-49194923 MS.gene55092:CDS
CTTCATTATCAACCCATGAA+TGG 0.521629 2.2:-49191609 MS.gene55092:CDS
AGATCCCTACCCAATTCCAT+TGG 0.522866 2.2:-49193992 MS.gene55092:CDS
ATGAATGGTCTTGCTTCACC+AGG 0.524055 2.2:-49191594 MS.gene55092:CDS
TGCTCCACCACCTCCAGTGG+AGG 0.525602 2.2:+49191783 None:intergenic
GAGCTTCTGGAGGCATCCGA+TGG 0.527574 2.2:+49191842 None:intergenic
CAACAGTAGTCCTATGGAGT+AGG 0.528656 2.2:+49191917 None:intergenic
CCCTGCTCCACCACCTCCAG+TGG 0.531840 2.2:+49191780 None:intergenic
GAGTCATTGCCCTACTCCAT+AGG 0.539286 2.2:-49191927 MS.gene55092:CDS
GGAAGATAGGGTTCATGTTG+TGG 0.545097 2.2:-49194842 MS.gene55092:CDS
CTCCAAAAGCTAAGCGTGGA+GGG 0.545563 2.2:-49191822 MS.gene55092:CDS
TAGGGACAACAGTAGTCCTA+TGG 0.545811 2.2:+49191911 None:intergenic
ATCATATGCCAACAAGGAAG+AGG 0.547319 2.2:-49194900 MS.gene55092:CDS
AATTACGACGGGGTGAGAAG+AGG 0.549684 2.2:+49191544 None:intergenic
ACGTACGTTTGAATTGCCTC+AGG 0.550757 2.2:-49192022 MS.gene55092:CDS
GACGAGGTTCTCAAGGTCGT+CGG 0.550775 2.2:+49191992 None:intergenic
TTGCTTCACCAGGCTTCATG+GGG 0.551908 2.2:-49191584 MS.gene55092:CDS
GACGCCGACGGAGGAAGATA+GGG 0.554013 2.2:-49194854 MS.gene55092:CDS
TCAACTTAAGGAATTACGAC+GGG 0.555058 2.2:+49191533 None:intergenic
CTATCTTCCTCCGTCGGCGT+CGG 0.555118 2.2:+49194856 None:intergenic
AAGTTTAGGAAGTGAGTCCA+AGG 0.558762 2.2:+49194804 None:intergenic
GACAACCAATGGAATTGGGT+AGG 0.561937 2.2:+49193987 None:intergenic
GTTCATGTTGTGGACTTGCA+TGG 0.567190 2.2:-49194832 MS.gene55092:CDS
AGCTAACGTCTAGTTCAACT+AGG 0.568083 2.2:+49191892 None:intergenic
AAAACATTGCCCGACTCCAT+CGG 0.568332 2.2:-49191858 MS.gene55092:CDS
GCTCAGTTCGCCTCCACTGG+AGG 0.570036 2.2:-49191793 MS.gene55092:CDS
AGATGGTGGATGGTGAAATG+TGG 0.570372 2.2:-49191690 MS.gene55092:CDS
AACAGTAGTCCTATGGAGTA+GGG 0.572641 2.2:+49191918 None:intergenic
ATCATGTGAGAGGTGGAGCT+AGG 0.579817 2.2:+49192062 None:intergenic
ACAACCAATGGAATTGGGTA+GGG 0.580388 2.2:+49193988 None:intergenic
GACGACGTCGCCGACGCCGA+CGG 0.580655 2.2:-49194866 MS.gene55092:CDS
GGGAAACGATCAGAACATAA+GGG 0.581219 2.2:-49191642 MS.gene55092:CDS
TTTGTCTAACAACAATCTCC+AGG 0.584234 2.2:-49194749 MS.gene55092:intron
AATTCTCAATGGTTGTTGGG+AGG 0.586370 2.2:+49193918 None:intergenic
AATCTTGCCGTTAATGACTC+CGG 0.589085 2.2:+49194055 None:intergenic
GAGTTTAGAGAGACAACCAA+TGG 0.592305 2.2:+49193976 None:intergenic
CGGGGTGAGAAGAGGCGAAG+AGG 0.596579 2.2:+49191552 None:intergenic
AGGGCAATGACTCCAAGTAC+CGG 0.604878 2.2:+49191937 None:intergenic
GCTCCAAAAGCTAAGCGTGG+AGG 0.605699 2.2:-49191823 MS.gene55092:CDS
TCATATGCCAACAAGGAAGA+GGG 0.605953 2.2:-49194899 MS.gene55092:CDS
ATATCCCAACCAAGAAGAGA+TGG 0.606320 2.2:-49191707 MS.gene55092:CDS
AACCAAGAAGAGATGGTGGA+TGG 0.610943 2.2:-49191700 MS.gene55092:CDS
AATTGGGTAGGGATCTAAGC+TGG 0.619182 2.2:+49193999 None:intergenic
TCAATGGAGACATGATAAGT+GGG 0.620791 2.2:-49191662 MS.gene55092:CDS
AGATGGATCATATGCCAACA+AGG 0.620987 2.2:-49194906 MS.gene55092:CDS
AAGAGTCATCATGTGAGAGG+TGG 0.622685 2.2:+49192055 None:intergenic
GGGTAGGGATCTAAGCTGGT+TGG 0.623614 2.2:+49194003 None:intergenic
GACGTCGCCGACGCCGACGG+AGG 0.630661 2.2:-49194863 MS.gene55092:CDS
TCCCAACCAAGAAGAGATGG+TGG 0.632111 2.2:-49191704 MS.gene55092:CDS
GCTAACGTCTAGTTCAACTA+GGG 0.636021 2.2:+49191893 None:intergenic
GGTCGTCGGGGAGACTCCTG+AGG 0.642718 2.2:+49192006 None:intergenic
GGTGAAGCAAGACCATTCAT+GGG 0.642951 2.2:+49191597 None:intergenic
CATAAGAGTCATCATGTGAG+AGG 0.643496 2.2:+49192052 None:intergenic
GAAGCTCCAAAAGCTAAGCG+TGG 0.653198 2.2:-49191826 MS.gene55092:CDS
GATGGTGGATGGTGAAATGT+GGG 0.654566 2.2:-49191689 MS.gene55092:CDS
CTCAACTTAAGGAATTACGA+CGG 0.656785 2.2:+49191532 None:intergenic
TCCAGTGGAGGCGAACTGAG+CGG 0.662649 2.2:+49191795 None:intergenic
GGTGGAGCAGGGATTGCATG+TGG 0.678013 2.2:-49191769 MS.gene55092:CDS
CTATATATAACAGAACATAC+CGG 0.683092 2.2:-49194074 MS.gene55092:intron
CGAGGTTCTCAAGGTCGTCG+GGG 0.683613 2.2:+49191994 None:intergenic
TGAACCCTATCTTCCTCCGT+CGG 0.693937 2.2:+49194850 None:intergenic
TTAGGGTTTCAAGATTGACG+AGG 0.703892 2.2:+49191976 None:intergenic
CAACTTAAGGAATTACGACG+GGG 0.720638 2.2:+49191534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATCTTTATTAACTAT+TGG - chr2.2:49192821-49192840 MS.gene55092:intron 10.0%
!! AATAGTTAATAAAGATAATT+TGG + chr2.2:49192822-49192841 None:intergenic 10.0%
!! ATATATTAGATGTAATATAA+CGG - chr2.2:49192160-49192179 MS.gene55092:CDS 10.0%
!! TGTTATATAAATTATTTGAT+AGG - chr2.2:49192383-49192402 MS.gene55092:intron 10.0%
!!! TAGTTTTAAAAGTAATAATT+TGG - chr2.2:49192845-49192864 MS.gene55092:intron 10.0%
!!! TATTCTTGTTTTTTTTTTTA+GGG - chr2.2:49193884-49193903 MS.gene55092:intron 10.0%
!!! TTATTCTTGTTTTTTTTTTT+AGG - chr2.2:49193883-49193902 MS.gene55092:intron 10.0%
!! CCATTATTATATGATAAAAT+TGG - chr2.2:49194163-49194182 MS.gene55092:intron 15.0%
!! TATTAACAAATTACATTTGT+AGG - chr2.2:49193590-49193609 MS.gene55092:intron 15.0%
!! TTATTCAATCAATATCTAAT+TGG + chr2.2:49194101-49194120 None:intergenic 15.0%
!!! AAAGATTATTCTATTTGTTA+TGG + chr2.2:49191992-49192011 None:intergenic 15.0%
!!! AATTTGTTAATATAAGTCTT+TGG + chr2.2:49193582-49193601 None:intergenic 15.0%
!!! ATTCTTGTTTTTTTTTTTAG+GGG - chr2.2:49193885-49193904 MS.gene55092:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr2.2:49192948-49192967 MS.gene55092:intron 15.0%
!!! CCAATTTTATCATATAATAA+TGG + chr2.2:49194166-49194185 None:intergenic 15.0%
!! AAACAAGAATAAAAGTCTAT+CGG + chr2.2:49193875-49193894 None:intergenic 20.0%
!! AATAGAATAATCTTTGTTGA+AGG - chr2.2:49191997-49192016 MS.gene55092:CDS 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr2.2:49192908-49192927 MS.gene55092:intron 20.0%
!! ATAGAATAATCTTTGTTGAA+GGG - chr2.2:49191998-49192017 MS.gene55092:CDS 20.0%
!! TGATTAGAATTGAAAATTTG+AGG + chr2.2:49194010-49194029 None:intergenic 20.0%
!!! AGTACAATGCAATTTTATTA+AGG - chr2.2:49191805-49191824 MS.gene55092:CDS 20.0%
!!! TAACTTTTTTTTTTAGTGGT+CGG - chr2.2:49193160-49193179 MS.gene55092:intron 20.0%
!!! TGCATAACTTTTTTTTTTAG+TGG - chr2.2:49193156-49193175 MS.gene55092:intron 20.0%
! AAAAACGAGAAATTCATGAT+GGG + chr2.2:49193953-49193972 None:intergenic 25.0%
! AACAAATATTGAACCAGAAT+TGG + chr2.2:49193786-49193805 None:intergenic 25.0%
! AATTGTGAATTTGTCAAACT+TGG + chr2.2:49191779-49191798 None:intergenic 25.0%
! ACAAATATTGAACCAGAATT+GGG + chr2.2:49193785-49193804 None:intergenic 25.0%
! ACTAACCATGATTAAAAATC+CGG - chr2.2:49193848-49193867 MS.gene55092:intron 25.0%
! ATTATTAAACTTGGAGATGT+TGG - chr2.2:49192459-49192478 MS.gene55092:intron 25.0%
! CTATATATAACAGAACATAC+CGG - chr2.2:49192420-49192439 MS.gene55092:intron 25.0%
! TAAAAACGAGAAATTCATGA+TGG + chr2.2:49193954-49193973 None:intergenic 25.0%
! TCAATCAATATCTAATTGGT+AGG + chr2.2:49194097-49194116 None:intergenic 25.0%
! TCCAAATCTTAAAATCATAG+TGG - chr2.2:49191957-49191976 MS.gene55092:CDS 25.0%
! TTTATTTGCATGACATCATT+AGG + chr2.2:49193664-49193683 None:intergenic 25.0%
!! ATGAATAGAAAACTTGTTTG+AGG + chr2.2:49193512-49193531 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG + chr2.2:49192737-49192756 None:intergenic 25.0%
!!! AACTTTTTTTTTTAGTGGTC+GGG - chr2.2:49193161-49193180 MS.gene55092:intron 25.0%
!!! ACATGTTTTTAGTTGTGTAT+AGG - chr2.2:49193044-49193063 MS.gene55092:intron 25.0%
!!! ACCACTATGATTTTAAGATT+TGG + chr2.2:49191961-49191980 None:intergenic 25.0%
!!! GGATTTTTTTGATAAGTATC+TGG - chr2.2:49192046-49192065 MS.gene55092:CDS 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG - chr2.2:49192738-49192757 MS.gene55092:intron 25.0%
AAAACGAGAAATTCATGATG+GGG + chr2.2:49193952-49193971 None:intergenic 30.0%
AACGGCAAGATTATTAAACT+TGG - chr2.2:49192450-49192469 MS.gene55092:intron 30.0%
AATAAACCTGCAATTCTCAA+TGG + chr2.2:49192590-49192609 None:intergenic 30.0%
AATCTTTGTTGAAGGGAAAA+TGG - chr2.2:49192005-49192024 MS.gene55092:CDS 30.0%
ACCCATATCAAGTTAATGTT+AGG - chr2.2:49192694-49192713 MS.gene55092:intron 30.0%
CCCATATCAAGTTAATGTTA+GGG - chr2.2:49192695-49192714 MS.gene55092:intron 30.0%
GAAATTCTGACTCACATTTA+GGG + chr2.2:49194538-49194557 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr2.2:49193201-49193220 None:intergenic 30.0%
GCAAAACACAATAATGAACA+TGG + chr2.2:49193139-49193158 None:intergenic 30.0%
GCTAAATCAAGAGAAAGTTT+AGG + chr2.2:49191707-49191726 None:intergenic 30.0%
TAAATGTGAGTCAGAATTTC+CGG - chr2.2:49194538-49194557 MS.gene55092:intron 30.0%
! CCCTAACATTAACTTGATAT+GGG + chr2.2:49192698-49192717 None:intergenic 30.0%
! TCCCTAACATTAACTTGATA+TGG + chr2.2:49192699-49192718 None:intergenic 30.0%
! TGGATCTAAATCCATGATTT+TGG + chr2.2:49191941-49191960 None:intergenic 30.0%
! TGTGCAGAGTATTAATTAGA+GGG - chr2.2:49192874-49192893 MS.gene55092:intron 30.0%
!! AAGCAACACTCATTTTGAAA+CGG - chr2.2:49192974-49192993 MS.gene55092:intron 30.0%
!! ATATAAGTCTTTGGTTTGCA+TGG + chr2.2:49193573-49193592 None:intergenic 30.0%
!!! ACTTTTTTTTTTAGTGGTCG+GGG - chr2.2:49193162-49193181 MS.gene55092:intron 30.0%
!!! CGATATTGATTTTGTGATGT+TGG + chr2.2:49194046-49194065 None:intergenic 30.0%
AAACGAGAAATTCATGATGG+GGG + chr2.2:49193951-49193970 None:intergenic 35.0%
AATATTGAACCAGAATTGGG+AGG + chr2.2:49193782-49193801 None:intergenic 35.0%
ACTTATCATGTCTCCATTGA+AGG + chr2.2:49194832-49194851 None:intergenic 35.0%
AGAATAAAAGTCTATCGGAC+CGG + chr2.2:49193870-49193889 None:intergenic 35.0%
CTTCATTATCAACCCATGAA+TGG - chr2.2:49194885-49194904 MS.gene55092:CDS 35.0%
GGAAATTCTGACTCACATTT+AGG + chr2.2:49194539-49194558 None:intergenic 35.0%
GTGCAATTGTGCTAAAAACT+TGG - chr2.2:49194187-49194206 MS.gene55092:intron 35.0%
GTTGAGATTCAGTTCTTCTA+AGG + chr2.2:49194319-49194338 None:intergenic 35.0%
TCAACTTAAGGAATTACGAC+GGG + chr2.2:49194964-49194983 None:intergenic 35.0%
TCAATGGAGACATGATAAGT+GGG - chr2.2:49194832-49194851 MS.gene55092:CDS 35.0%
TCATCAGATGACAATGAAGA+TGG - chr2.2:49191571-49191590 MS.gene55092:CDS 35.0%
TCATGATGAGATCAATAGCT+AGG - chr2.2:49191896-49191915 MS.gene55092:CDS 35.0%
TGAGATCAATAGCTAGGAAT+AGG - chr2.2:49191902-49191921 MS.gene55092:CDS 35.0%
TGCAATTCTCAATGGTTGTT+GGG + chr2.2:49192582-49192601 None:intergenic 35.0%
TGCATAACTATCTACCAAGA+GGG - chr2.2:49193254-49193273 MS.gene55092:intron 35.0%
TGCATAATATATGCAAGGTC+CGG + chr2.2:49193196-49193215 None:intergenic 35.0%
TGGCATAATCTTGTACTACT+TGG - chr2.2:49192025-49192044 MS.gene55092:CDS 35.0%
TTCAATGGAGACATGATAAG+TGG - chr2.2:49194831-49194850 MS.gene55092:CDS 35.0%
TTGCATAACTATCTACCAAG+AGG - chr2.2:49193253-49193272 MS.gene55092:intron 35.0%
TTTGTCTAACAACAATCTCC+AGG - chr2.2:49191745-49191764 MS.gene55092:CDS 35.0%
! GTGTGCAGAGTATTAATTAG+AGG - chr2.2:49192873-49192892 MS.gene55092:intron 35.0%
!!! AACACTCATTTTGAAACGGA+TGG - chr2.2:49192978-49192997 MS.gene55092:intron 35.0%
!!! GACACTCATTTTAAAACGGA+TGG + chr2.2:49192733-49192752 None:intergenic 35.0%
!!! GTTTTTTTAAGTTCCCCTCT+TGG + chr2.2:49193271-49193290 None:intergenic 35.0%
AACAGTAGTCCTATGGAGTA+GGG + chr2.2:49194579-49194598 None:intergenic 40.0%
AAGTTTAGGAAGTGAGTCCA+AGG + chr2.2:49191693-49191712 None:intergenic 40.0%
AATCTTGCCGTTAATGACTC+CGG + chr2.2:49192442-49192461 None:intergenic 40.0%
AATTCTCAATGGTTGTTGGG+AGG + chr2.2:49192579-49192598 None:intergenic 40.0%
ACAACCAATGGAATTGGGTA+GGG + chr2.2:49192509-49192528 None:intergenic 40.0%
AGAGAGACAACCAATGGAAT+TGG + chr2.2:49192515-49192534 None:intergenic 40.0%
AGATGGATCATATGCCAACA+AGG - chr2.2:49191588-49191607 MS.gene55092:CDS 40.0%
AGCAAACTTCCAGACACAAT+AGG - chr2.2:49194351-49194370 MS.gene55092:intron 40.0%
AGGAAGACACACAAGTTTGT+TGG + chr2.2:49194415-49194434 None:intergenic 40.0%
ATATCCCAACCAAGAAGAGA+TGG - chr2.2:49194787-49194806 MS.gene55092:CDS 40.0%
ATCATATGCCAACAAGGAAG+AGG - chr2.2:49191594-49191613 MS.gene55092:CDS 40.0%
ATTCTCAATGGTTGTTGGGA+GGG + chr2.2:49192578-49192597 None:intergenic 40.0%
CAACAACCATTGAGAATTGC+AGG - chr2.2:49192581-49192600 MS.gene55092:intron 40.0%
CAACTTAAGGAATTACGACG+GGG + chr2.2:49194963-49194982 None:intergenic 40.0%
CATAAGAGTCATCATGTGAG+AGG + chr2.2:49194445-49194464 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + chr2.2:49193194-49193213 None:intergenic 40.0%
CTCTCACATGATGACTCTTA+TGG - chr2.2:49194443-49194462 MS.gene55092:intron 40.0%
CTGCAATTCTCAATGGTTGT+TGG + chr2.2:49192583-49192602 None:intergenic 40.0%
GAACATACCGGAGTCATTAA+CGG - chr2.2:49192432-49192451 MS.gene55092:intron 40.0%
GAGAGACAACCAATGGAATT+GGG + chr2.2:49192514-49192533 None:intergenic 40.0%
GAGTTTAGAGAGACAACCAA+TGG + chr2.2:49192521-49192540 None:intergenic 40.0%
GCATAACTATCTACCAAGAG+GGG - chr2.2:49193255-49193274 MS.gene55092:intron 40.0%
GCATAATATATGCAAGGTCC+GGG + chr2.2:49193195-49193214 None:intergenic 40.0%
GCATGCTTCACGTCTTTATA+AGG - chr2.2:49194125-49194144 MS.gene55092:intron 40.0%
GGGAAACGATCAGAACATAA+GGG - chr2.2:49194852-49194871 MS.gene55092:CDS 40.0%
TCAAACTTGGAGATTGTACC+TGG + chr2.2:49191766-49191785 None:intergenic 40.0%
TCATATGCCAACAAGGAAGA+GGG - chr2.2:49191595-49191614 MS.gene55092:CDS 40.0%
TCTTCTTGGTTGGGATATGA+TGG + chr2.2:49194785-49194804 None:intergenic 40.0%
TGGGAAACGATCAGAACATA+AGG - chr2.2:49194851-49194870 MS.gene55092:CDS 40.0%
TTAGGGTTTCAAGATTGACG+AGG + chr2.2:49194521-49194540 None:intergenic 40.0%
! AGCTAACGTCTAGTTCAACT+AGG + chr2.2:49194605-49194624 None:intergenic 40.0%
! GCTAACGTCTAGTTCAACTA+GGG + chr2.2:49194604-49194623 None:intergenic 40.0%
! TCGGACCGGATTTTTAATCA+TGG + chr2.2:49193856-49193875 None:intergenic 40.0%
! TGAGCATAACTCAGTTGGTA+TGG + chr2.2:49193223-49193242 None:intergenic 40.0%
!! AATTGGGAGGTTTTGTCTGT+TGG + chr2.2:49193769-49193788 None:intergenic 40.0%
!! ATTCAGTTCTTCTAAGGCTC+TGG + chr2.2:49194313-49194332 None:intergenic 40.0%
!! CTCAAAGCTTTGAATGTCTC+TGG - chr2.2:49192538-49192557 MS.gene55092:intron 40.0%
!! CTTTGGTTTGCATGGTACAT+GGG + chr2.2:49193565-49193584 None:intergenic 40.0%
!! TCTTTGGTTTGCATGGTACA+TGG + chr2.2:49193566-49193585 None:intergenic 40.0%
AAAACATTGCCCGACTCCAT+CGG - chr2.2:49194636-49194655 MS.gene55092:intron 45.0%
AAGAGTCATCATGTGAGAGG+TGG + chr2.2:49194442-49194461 None:intergenic 45.0%
AATTGGGTAGGGATCTAAGC+TGG + chr2.2:49192498-49192517 None:intergenic 45.0%
ACGTACGTTTGAATTGCCTC+AGG - chr2.2:49194472-49194491 MS.gene55092:intron 45.0%
AGATCCCTACCCAATTCCAT+TGG - chr2.2:49192502-49192521 MS.gene55092:intron 45.0%
AGCTCAAAGCCTATTGTGTC+TGG + chr2.2:49194363-49194382 None:intergenic 45.0%
ATCCACCATCTCTTCTTGGT+TGG + chr2.2:49194795-49194814 None:intergenic 45.0%
CAACAGTAGTCCTATGGAGT+AGG + chr2.2:49194580-49194599 None:intergenic 45.0%
CAAGATTGACGAGGTTCTCA+AGG + chr2.2:49194512-49194531 None:intergenic 45.0%
CAGACAAAACCTCCCAATTC+TGG - chr2.2:49193770-49193789 MS.gene55092:intron 45.0%
GACAACCAATGGAATTGGGT+AGG + chr2.2:49192510-49192529 None:intergenic 45.0%
GAGTCAGAATTTCCGGTACT+TGG - chr2.2:49194545-49194564 MS.gene55092:intron 45.0%
GCACTAGAGAGCCAAAATCA+TGG - chr2.2:49191927-49191946 MS.gene55092:CDS 45.0%
GGAAGATAGGGTTCATGTTG+TGG - chr2.2:49191652-49191671 MS.gene55092:CDS 45.0%
GGTGAAGCAAGACCATTCAT+GGG + chr2.2:49194900-49194919 None:intergenic 45.0%
GTGAAATGTGGGACCTTCAA+TGG - chr2.2:49194816-49194835 MS.gene55092:CDS 45.0%
GTTCATGTTGTGGACTTGCA+TGG - chr2.2:49191662-49191681 MS.gene55092:CDS 45.0%
TAGGGACAACAGTAGTCCTA+TGG + chr2.2:49194586-49194605 None:intergenic 45.0%
TCCACCATCTCTTCTTGGTT+GGG + chr2.2:49194794-49194813 None:intergenic 45.0%
TGGTGAAGCAAGACCATTCA+TGG + chr2.2:49194901-49194920 None:intergenic 45.0%
TTTGTCTCCCTCTTCCTTGT+TGG + chr2.2:49191605-49191624 None:intergenic 45.0%
! ATGAATGGTCTTGCTTCACC+AGG - chr2.2:49194900-49194919 MS.gene55092:CDS 45.0%
!! AACCAAGAAGAGATGGTGGA+TGG - chr2.2:49194794-49194813 MS.gene55092:CDS 45.0%
!! AGATGGTGGATGGTGAAATG+TGG - chr2.2:49194804-49194823 MS.gene55092:CDS 45.0%
!! GATGGTGGATGGTGAAATGT+GGG - chr2.2:49194805-49194824 MS.gene55092:CDS 45.0%
!!! TTAGCTTTTGGAGCTTCTGG+AGG + chr2.2:49194665-49194684 None:intergenic 45.0%
!!! TTTATTAATATTTTAAAAAC+TGG - chr2.2:49193734-49193753 MS.gene55092:intron 5.0%
AATTACGACGGGGTGAGAAG+AGG + chr2.2:49194953-49194972 None:intergenic 50.0%
AGGGCAATGACTCCAAGTAC+CGG + chr2.2:49194560-49194579 None:intergenic 50.0%
ATCATGTGAGAGGTGGAGCT+AGG + chr2.2:49194435-49194454 None:intergenic 50.0%
CAATGGTTGTTGGGAGGGAT+TGG + chr2.2:49192573-49192592 None:intergenic 50.0%
CACCATCCACCATCTCTTCT+TGG + chr2.2:49194799-49194818 None:intergenic 50.0%
CCAACTGAGTTATGCTCACG+AGG - chr2.2:49193225-49193244 MS.gene55092:intron 50.0%
CCTCGTGAGCATAACTCAGT+TGG + chr2.2:49193228-49193247 None:intergenic 50.0%
CTCCAAAAGCTAAGCGTGGA+GGG - chr2.2:49194672-49194691 MS.gene55092:intron 50.0%
CTTGCTTCACCAGGCTTCAT+GGG - chr2.2:49194909-49194928 MS.gene55092:CDS 50.0%
GAAGCTCCAAAAGCTAAGCG+TGG - chr2.2:49194668-49194687 MS.gene55092:intron 50.0%
GAGTCATTGCCCTACTCCAT+AGG - chr2.2:49194567-49194586 MS.gene55092:intron 50.0%
TCCCAACCAAGAAGAGATGG+TGG - chr2.2:49194790-49194809 MS.gene55092:CDS 50.0%
TCTTGCTTCACCAGGCTTCA+TGG - chr2.2:49194908-49194927 MS.gene55092:CDS 50.0%
TGAACCCTATCTTCCTCCGT+CGG + chr2.2:49191647-49191666 None:intergenic 50.0%
TTGCTTCACCAGGCTTCATG+GGG - chr2.2:49194910-49194929 MS.gene55092:CDS 50.0%
!! CAGTTCTTCTAAGGCTCTGG+TGG + chr2.2:49194310-49194329 None:intergenic 50.0%
!! TTCCCTCCACGCTTAGCTTT+TGG + chr2.2:49194677-49194696 None:intergenic 50.0%
!!! CGCTTAGCTTTTGGAGCTTC+TGG + chr2.2:49194668-49194687 None:intergenic 50.0%
ACGAGGTTCTCAAGGTCGTC+GGG + chr2.2:49194504-49194523 None:intergenic 55.0%
GACGAGGTTCTCAAGGTCGT+CGG + chr2.2:49194505-49194524 None:intergenic 55.0%
GCTCCAAAAGCTAAGCGTGG+AGG - chr2.2:49194671-49194690 MS.gene55092:intron 55.0%
GGACTTGCATGGCATGTCCT+TGG - chr2.2:49191673-49191692 MS.gene55092:CDS 55.0%
GGGTAGGGATCTAAGCTGGT+TGG + chr2.2:49192494-49192513 None:intergenic 55.0%
AGTGGTCGGGGTTTGAACCC+CGG - chr2.2:49193174-49193193 MS.gene55092:intron 60.0%
CGAGGTTCTCAAGGTCGTCG+GGG + chr2.2:49194503-49194522 None:intergenic 60.0%
CTATCTTCCTCCGTCGGCGT+CGG + chr2.2:49191641-49191660 None:intergenic 60.0%
CTTCACCAGGCTTCATGGGG+AGG - chr2.2:49194913-49194932 MS.gene55092:CDS 60.0%
GACAACCTCCCCATGAAGCC+TGG + chr2.2:49194921-49194940 None:intergenic 60.0%
GACGCCGACGGAGGAAGATA+GGG - chr2.2:49191640-49191659 MS.gene55092:CDS 60.0%
GGTGGAGCAGGGATTGCATG+TGG - chr2.2:49194725-49194744 MS.gene55092:intron 60.0%
TCCAGTGGAGGCGAACTGAG+CGG + chr2.2:49194702-49194721 None:intergenic 60.0%
!! CTGGAGGCATCCGATGGAGT+CGG + chr2.2:49194649-49194668 None:intergenic 60.0%
!! GAGCTTCTGGAGGCATCCGA+TGG + chr2.2:49194655-49194674 None:intergenic 60.0%
!! TGGAGGCATCCGATGGAGTC+GGG + chr2.2:49194648-49194667 None:intergenic 60.0%
CAGTTCGCCTCCACTGGAGG+TGG - chr2.2:49194704-49194723 MS.gene55092:intron 65.0%
CCAGTGGAGGCGAACTGAGC+GGG + chr2.2:49194701-49194720 None:intergenic 65.0%
CGACGCCGACGGAGGAAGAT+AGG - chr2.2:49191639-49191658 MS.gene55092:CDS 65.0%
CGGGGTGAGAAGAGGCGAAG+AGG + chr2.2:49194945-49194964 None:intergenic 65.0%
GCTCAGTTCGCCTCCACTGG+AGG - chr2.2:49194701-49194720 MS.gene55092:intron 65.0%
TGCTCCACCACCTCCAGTGG+AGG + chr2.2:49194714-49194733 None:intergenic 65.0%
TTCGCCTCCACTGGAGGTGG+TGG - chr2.2:49194707-49194726 MS.gene55092:intron 65.0%
!! CCACTGGAGGTGGTGGAGCA+GGG - chr2.2:49194714-49194733 MS.gene55092:intron 65.0%
!! TCCACTGGAGGTGGTGGAGC+AGG - chr2.2:49194713-49194732 MS.gene55092:intron 65.0%
CCCGCTCAGTTCGCCTCCAC+TGG - chr2.2:49194698-49194717 MS.gene55092:intron 70.0%
CCCTGCTCCACCACCTCCAG+TGG + chr2.2:49194717-49194736 None:intergenic 70.0%
GGTCGTCGGGGAGACTCCTG+AGG + chr2.2:49194491-49194510 None:intergenic 70.0%
GACGACGTCGCCGACGCCGA+CGG - chr2.2:49191628-49191647 MS.gene55092:CDS 75.0%
! GACGTCGCCGACGCCGACGG+AGG - chr2.2:49191631-49191650 MS.gene55092:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 49191533 49194983 49191533 ID=MS.gene55092
chr2.2 mRNA 49191533 49194983 49191533 ID=MS.gene55092.t1;Parent=MS.gene55092
chr2.2 exon 49194750 49194983 49194750 ID=MS.gene55092.t1.exon1;Parent=MS.gene55092.t1
chr2.2 CDS 49194750 49194983 49194750 ID=cds.MS.gene55092.t1;Parent=MS.gene55092.t1
chr2.2 exon 49193914 49194083 49193914 ID=MS.gene55092.t1.exon2;Parent=MS.gene55092.t1
chr2.2 CDS 49193914 49194083 49193914 ID=cds.MS.gene55092.t1;Parent=MS.gene55092.t1
chr2.2 exon 49191533 49192202 49191533 ID=MS.gene55092.t1.exon3;Parent=MS.gene55092.t1
chr2.2 CDS 49191533 49192202 49191533 ID=cds.MS.gene55092.t1;Parent=MS.gene55092.t1
Gene Sequence

>MS.gene55092

ATGTATGAATTGCAACAATTTCAGTTTCTTCATCAAGATCATCAGATGACAATGAAGATGGATCATATGCCAACAAGGAAGAGGGAGACAAAAAAGACGACGTCGCCGACGCCGACGGAGGAAGATAGGGTTCATGTTGTGGACTTGCATGGCATGTCCTTGGACTCACTTCCTAAACTTTCTCTTGATTTAGCTATTATTTGCAAGCTCAATTTGTCTAACAACAATCTCCAGGTACAATCTCCAAGTTTGACAAATTCACAATTAATTTTAGTACAATGCAATTTTATTAAGGTTTTGAAGTTTAAGTTTTTTCATCAAAATTGTTGTACAATCACAATTATTAATATATATGATTGACACTCATGATGAGATCAATAGCTAGGAATAGGATGCACTAGAGAGCCAAAATCATGGATTTAGATCCAAATCTTAAAATCATAGTGGTTTAGCTGTCCATAACAAATAGAATAATCTTTGTTGAAGGGAAAATGGCATAATCTTGTACTACTTGGATTTTTTTGATAAGTATCTGGTGCAACTAGTATTAGTATATATTCATTTTTTTTGTACATATTCATTTTATTAAGTCTAAAAAATATATTTGATTAAGACATACTTAACTTAATATATTAGATGTAATATAACGGTTAGCTTTGATACAGATATCTTCTTCTAAATTGATTGAATATCTTCTTCTTTTTTTAATGAACATGAACATTTATTTTTATGAACAATTAATTGAATATCTTTTTTTTAATGAACAATTGATTGAATATTTGAATATCTTTTTTTTTAATGAACAATTGATTGAATATCTTTTATTTTATGTAAAATTGATTGAATATCTTGTTATATAAATTATTTGATAGGAAATAACTATTTAACTATATATAACAGAACATACCGGAGTCATTAACGGCAAGATTATTAAACTTGGAGATGTTGGACGTGCACTCCAACCAGCTTAGATCCCTACCCAATTCCATTGGTTGTCTCTCTAAACTCAAAGCTTTGAATGTCTCTGGAAACTTCATCCAATCCCTCCCAACAACCATTGAGAATTGCAGGTTTATTTTCTTAACTTCTCTTTATATTTTATCGATAATTAAATATATGATAAAATTATCTCATATTATAACTTTTTGAATTTTAAGTGTTACCCATATCAAGTTAATGTTAGGGATTTATTTTACTCCATCCGTTTTAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGCAATGATATTAAAAGAAAGAGAATGATTATTTTACCAAATTATCTTTATTAACTATTGGTTAGTTTTAAAAGTAATAATTTGGAAGTAGTGTGCAGAGTATTAATTAGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAATGACATTCATTTTGAAACAAATTTTTTTGGCTAAAGCAACACTCATTTTGAAACGGATGGAGTACTAAGTTTGACAACTGATGTCAAAAGATGCGACTCATATACATGTTTTTAGTTGTGTATAGGTGTTATTACTTTCTTTCAGCATACATATGACTTTTCAAATTTTGAATGCTGACATTATTACAAGAACATCCATGTTCATTATTGTGTTTTGCATAACTTTTTTTTTTAGTGGTCGGGGTTTGAACCCCGGACCTTGCATATATTATGCATTGTCCATACCAACTGAGTTATGCTCACGAGGACGTTTTGCATAACTATCTACCAAGAGGGGAACTTAAAAAAACAAATAAATATTTAATTGATTTGAGAATCTATAATTTTTTTAATTTTTTTTTGTATTTTTTCATAAATTTATTAAGATCTAGAAAATAGATTAATTATATCTCATCAAGCTAATCAAATTTTTGTTTACAAGAGTAATTGCTATTACTTTTCAAAAGAAAAGACTAATTGCTATATATTAGTTAACAACTCAAACAAGTTATCTTTTTTTCTTGTGATACCTCAAACAAGTTTTCTATTCATCTCTAATTAAACATAATCATATTTAATTTTCCCATGTACCATGCAAACCAAAGACTTATATTAACAAATTACATTTGTAGGTGTCTAATCATATTTCAACAAATATCTAGTATTCACATTTTACTTTCACCTAATGATGTCATGCAAATAAAAAAAATAACAAAAAGATCGAGAAATTGACTTTGATGTAAATTGATATTTTTTTATTAATATTTTAAAAACTGGATTGTAGATCCAACAGACAAAACCTCCCAATTCTGGTTCAATATTTGTTTAACAAAATAAAAAAATATTATTAACAAAATAAACTGTTTGAACTAACCATGATTAAAAATCCGGTCCGATAGACTTTTATTCTTGTTTTTTTTTTTAGGGGAGACTTTGTATACTTGTTTTGCAATGATATAATATAAATACCCCCATCATGAATTTCTCGTTTTTAATTGTTTCTCTCTTAAAAAAATATATTTAATTACCTCAAATTTTCAATTCTAATCAAGAATTTCTAGATCCAACATCACAAAATCAATATCGTAAACTCTACGCATATTATATCTCTAAACCTACCAATTAGATATTGATTGAATAATGCTGCATGCTTCACGTCTTTATAAGGCTCACATCTATGTCACCATTATTATATGATAAAATTGGAGTGCAATTGTGCTAAAAACTTGGTTATGTGTGTTACTGTTACATATCATTGTTAATATTGATTATTACATGTTTTTTTCATTCTTTTTTCTAACATGCACATGTGCATATGAATTTTGATCCACCAGAGCCTTAGAAGAACTGAATCTCAACTTCAACATGTTGAGCAAACTTCCAGACACAATAGGCTTTGAGCTCGTAAAACTCAAGAAGCTTGCAGTTAACTCCAACAAACTTGTGTGTCTTCCTAGCTCCACCTCTCACATGATGACTCTTATGGTTCTCGACGTACGTTTGAATTGCCTCAGGAGTCTCCCCGACGACCTTGAGAACCTCGTCAATCTTGAAACCCTAAATGTGAGTCAGAATTTCCGGTACTTGGAGTCATTGCCCTACTCCATAGGACTACTGTTGTCCCTAGTTGAACTAGACGTTAGCTACAACAATATCAAAACATTGCCCGACTCCATCGGATGCCTCCAGAAGCTCCAAAAGCTAAGCGTGGAGGGAAACCCGCTCAGTTCGCCTCCACTGGAGGTGGTGGAGCAGGGATTGCATGTGGTGAAAGAGTATATGTGTAACAAAATGAACTCAAGCCATCATATCCCAACCAAGAAGAGATGGTGGATGGTGAAATGTGGGACCTTCAATGGAGACATGATAAGTGGGAAACGATCAGAACATAAGGGTTTCAACAAGCTTCATTATCAACCCATGAATGGTCTTGCTTCACCAGGCTTCATGGGGAGGTTGTCGCCTCTTCGCCTCTTCTCACCCCGTCGTAATTCCTTAAGTTGA
Protein sequence

>MS.gene55092.t1

MYELQQFQFLHQDHQMTMKMDHMPTRKRETKKTTSPTPTEEDRVHVVDLHGMSLDSLPKLSLDLAIICKLNLSNNNLQNIPESLTARLLNLEMLDVHSNQLRSLPNSIGCLSKLKALNVSGNFIQSLPTTIENCRALEELNLNFNMLSKLPDTIGFELVKLKKLAVNSNKLVCLPSSTSHMMTLMVLDVRLNCLRSLPDDLENLVNLETLNVSQNFRYLESLPYSIGLLLSLVELDVSYNNIKTLPDSIGCLQKLQKLSVEGNPLSSPPLEVVEQGLHVVKEYMCNKMNSSHHIPTKKRWWMVKCGTFNGDMISGKRSEHKGFNKLHYQPMNGLASPGFMGRLSPLRLFSPRRNSLS