AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55183

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55183.t1 MTR_5g082660 100.000 206 0 0 1 206 100 305 2.12e-154 429
MS.gene55183.t1 MTR_3g070810 77.833 203 45 0 1 203 74 276 1.88e-116 332
MS.gene55183.t1 MTR_3g006690 43.066 137 74 4 54 189 332 465 6.63e-22 92.8
MS.gene55183.t1 MTR_2g049420 40.441 136 77 4 54 188 196 328 7.77e-22 91.3
MS.gene55183.t1 MTR_2g049420 40.441 136 77 4 54 188 324 456 2.07e-21 91.3
MS.gene55183.t1 MTR_2g049420 40.441 136 77 4 54 188 333 465 2.30e-21 91.3
MS.gene55183.t1 MTR_5g045920 37.857 140 83 4 54 192 162 298 2.04e-20 87.0
MS.gene55183.t1 MTR_2g017810 42.593 108 59 2 46 153 139 243 9.89e-17 77.0
MS.gene55183.t1 MTR_3g085395 36.296 135 82 4 59 192 241 372 1.75e-14 71.2
MS.gene55183.t1 MTR_3g085400 35.507 138 85 4 54 190 358 492 4.96e-14 70.5
MS.gene55183.t1 MTR_5g095530 28.244 131 90 3 56 184 215 343 1.06e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55183.t1 AT3G55960 76.471 204 48 0 1 204 100 303 1.37e-115 331
MS.gene55183.t1 AT1G29780 39.881 168 80 6 1 167 52 199 2.44e-23 93.2
MS.gene55183.t1 AT1G29770 38.961 154 75 6 1 153 105 240 1.03e-20 87.4
MS.gene55183.t1 AT5G11860 37.857 140 83 4 54 192 148 284 1.91e-20 87.4
MS.gene55183.t1 AT5G11860 37.857 140 83 4 54 192 148 284 1.91e-20 87.4
MS.gene55183.t1 AT5G11860 37.857 140 83 4 54 192 148 284 1.91e-20 87.4
MS.gene55183.t1 AT5G11860 37.857 140 83 4 54 192 148 284 1.91e-20 87.4
MS.gene55183.t1 AT5G11860 37.857 140 83 4 54 192 148 284 1.91e-20 87.4
MS.gene55183.t1 AT4G18140 40.714 140 79 4 52 190 303 439 8.24e-20 87.0
MS.gene55183.t1 AT5G45700 39.744 156 72 6 1 154 100 235 1.13e-19 84.7
MS.gene55183.t1 AT4G18140 41.304 138 77 4 52 188 303 437 1.35e-19 86.3
MS.gene55183.t1 AT4G18140 41.304 138 77 4 52 188 303 437 1.35e-19 86.3
MS.gene55183.t1 AT4G18140 41.304 138 77 4 52 188 303 437 1.42e-19 86.3
MS.gene55183.t1 AT4G18140 41.304 138 77 4 52 188 303 437 1.42e-19 86.3
MS.gene55183.t1 AT4G18140 41.304 138 77 4 52 188 303 437 1.42e-19 86.3
MS.gene55183.t1 AT5G46410 36.508 189 97 6 1 188 286 452 2.43e-19 85.5
MS.gene55183.t1 AT5G46410 36.508 189 97 6 1 188 283 449 2.50e-19 85.5
MS.gene55183.t1 AT5G46410 36.508 189 97 6 1 188 283 449 2.50e-19 85.5
MS.gene55183.t1 AT1G55900 31.333 150 93 6 56 198 214 360 5.55e-16 75.5
MS.gene55183.t1 AT1G55900 32.061 131 84 4 56 184 214 341 7.96e-16 75.1

Find 43 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACATGGAATTCCATTTAC+TGG 0.300795 5.2:+70626099 None:intergenic
TGGTTTGAATTGGTTTGATA+TGG 0.319744 5.2:-70628038 MS.gene55183:CDS
AAGCTGGAATCCCTTGCTTC+TGG 0.326322 5.2:+70625842 None:intergenic
CAATCGAAGCTGGTTTGAAT+TGG 0.345306 5.2:-70628048 MS.gene55183:CDS
TGTGGATGCCCAGCAGAAAA+TGG 0.348481 5.2:+70626075 None:intergenic
TTTGTATTGCAACCAGTAAA+TGG 0.348553 5.2:-70626111 MS.gene55183:CDS
GATTCAGTTTACGACTTTAC+CGG 0.385425 5.2:-70627664 MS.gene55183:CDS
CTTTGAACGGCCTGGGTTGA+AGG 0.399020 5.2:-70627882 MS.gene55183:CDS
GTTACAGTCTTTGAACGGCC+TGG 0.419543 5.2:-70627890 MS.gene55183:CDS
TTACAGTCTTTGAACGGCCT+GGG 0.443967 5.2:-70627889 MS.gene55183:CDS
TACAATGTCCAACTGGAAGC+TGG 0.452345 5.2:+70625826 None:intergenic
GTCAAGATCCTTCGATATGC+AGG 0.466355 5.2:+70626167 None:intergenic
AGCTTCCAGTTGGACATTGT+AGG 0.472847 5.2:-70625824 None:intergenic
ACCTACGTGCTAATTGTTGA+AGG 0.482376 5.2:+70627641 None:intergenic
CTGTTTACTGCGGGTCTCGA+AGG 0.487308 5.2:-70627821 MS.gene55183:intron
TAAATCCTACAATGTCCAAC+TGG 0.492585 5.2:+70625819 None:intergenic
CGTTCTCAAGCAATCGAAGC+TGG 0.492682 5.2:-70628058 MS.gene55183:CDS
CTTGTAGGTAGTACTTGACT+TGG 0.496374 5.2:-70628131 None:intergenic
TATATGCTTGCAGGGAACAT+AGG 0.502070 5.2:-70626209 MS.gene55183:intron
GCTTGAGAACGTAGTGCAGC+TGG 0.502523 5.2:+70628070 None:intergenic
CCAGCAGAAAATGGAATACA+TGG 0.507302 5.2:+70626084 None:intergenic
ATATGCTTGCAGGGAACATA+GGG 0.531954 5.2:-70626208 MS.gene55183:intron
GTTAAGAATTCCTTCAACCC+AGG 0.544659 5.2:+70627872 None:intergenic
GACCTGGTGCTGTTTACTGC+GGG 0.551658 5.2:-70627830 MS.gene55183:CDS
CTGATTGGTTCCAGAAGCAA+GGG 0.555776 5.2:-70625852 MS.gene55183:CDS
ACTGATTGGTTCCAGAAGCA+AGG 0.564868 5.2:-70625853 MS.gene55183:CDS
TCAGAGAGTTGCTTGAGAAG+TGG 0.576195 5.2:+70625919 None:intergenic
ATTATGTTACAGTCTTTGAA+CGG 0.582885 5.2:-70627895 MS.gene55183:CDS
ACTTAGTGAATTTGCTGACC+TGG 0.585034 5.2:-70627846 MS.gene55183:CDS
ACGTGCTAATTGTTGAAGGC+CGG 0.585930 5.2:+70627645 None:intergenic
TAGTGTACCTGGGTGTCATG+TGG 0.595285 5.2:+70626057 None:intergenic
GACCCGCAGTAAACAGCACC+AGG 0.597074 5.2:+70627828 None:intergenic
GGAACATAGGGAACATGTCA+AGG 0.601739 5.2:-70626196 MS.gene55183:CDS
TGACCTGGTGCTGTTTACTG+CGG 0.602861 5.2:-70627831 MS.gene55183:CDS
AAGGGATTCCAGCTTCCAGT+TGG 0.603406 5.2:-70625834 MS.gene55183:CDS
GGTTGCAATACAAAGCTGAA+AGG 0.613648 5.2:+70626120 None:intergenic
GGATCTTACCTGCATATCGA+AGG 0.615597 5.2:-70626175 MS.gene55183:CDS
TCTGGAACCAATCAGTCATG+TGG 0.624098 5.2:+70625860 None:intergenic
TTGTCTATTATGTCAACTAG+CGG 0.643882 5.2:+70627695 None:intergenic
TGGGCATCCACATGACACCC+AGG 0.657885 5.2:-70626064 MS.gene55183:intron
GGAATGTGTATCTTCTGACA+AGG 0.672929 5.2:-70628017 MS.gene55183:intron
GCTAGTTGACATAATAGACA+AGG 0.714010 5.2:-70627693 MS.gene55183:CDS
TGTTGTCTACAATTACAATG+CGG 0.772106 5.2:+70626145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTATAATAATTAACTA+AGG + chr5.2:70626690-70626709 None:intergenic 10.0%
!! ATTACACAAATATATAACAT+TGG + chr5.2:70626354-70626373 None:intergenic 15.0%
!! TTTATAATAATTAACTAAGG+AGG + chr5.2:70626687-70626706 None:intergenic 15.0%
!!! ACTGTAACATAATTAATTTT+TGG + chr5.2:70626047-70626066 None:intergenic 15.0%
!! AAAACATAAGAATACTAGAT+GGG + chr5.2:70627959-70627978 None:intergenic 20.0%
!! ACAAATATATAACATTGGAA+TGG + chr5.2:70626349-70626368 None:intergenic 20.0%
!! ATAACATTTATAAGAATGCA+TGG + chr5.2:70627723-70627742 None:intergenic 20.0%
!! ATAATTGTAAAATTCGAGAA+AGG + chr5.2:70627653-70627672 None:intergenic 20.0%
!! TAAAACATAAGAATACTAGA+TGG + chr5.2:70627960-70627979 None:intergenic 20.0%
!! TGTAAGCACTATAATTAATA+AGG + chr5.2:70626945-70626964 None:intergenic 20.0%
!!! GGGTGATTTTATTTTTTTAT+GGG + chr5.2:70627939-70627958 None:intergenic 20.0%
!!! TGGGTGATTTTATTTTTTTA+TGG + chr5.2:70627940-70627959 None:intergenic 20.0%
!!! TGTCTGTATTTAAAATATCA+TGG - chr5.2:70627548-70627567 MS.gene55183:intron 20.0%
!!! TTTACGTACTTTTGATTTTA+TGG - chr5.2:70627131-70627150 MS.gene55183:intron 20.0%
!!! TTTTTTGTTCGTTGAAAATT+TGG - chr5.2:70627042-70627061 MS.gene55183:intron 20.0%
! AGAGCAACAGTTAAATATTA+AGG + chr5.2:70626746-70626765 None:intergenic 25.0%
! ATAAATGTTATATGCTTGCA+GGG - chr5.2:70627732-70627751 MS.gene55183:intron 25.0%
! ATTATGTTACAGTCTTTGAA+CGG - chr5.2:70626054-70626073 MS.gene55183:intron 25.0%
! TAATATCTTCAAAGTCCTAA+GGG - chr5.2:70627108-70627127 MS.gene55183:intron 25.0%
! TACTATCAAATTAGAACTAC+TGG - chr5.2:70627442-70627461 MS.gene55183:intron 25.0%
! TATAAATGTTATATGCTTGC+AGG - chr5.2:70627731-70627750 MS.gene55183:intron 25.0%
! TGACTATAACTCAAGTAATT+GGG + chr5.2:70627307-70627326 None:intergenic 25.0%
! TTAACTAAAGAGACTTATTG+TGG + chr5.2:70626818-70626837 None:intergenic 25.0%
! TTTAAATACAGACAGACATA+TGG + chr5.2:70627542-70627561 None:intergenic 25.0%
!! AAACAGTTGTGTTGATAAAA+AGG + chr5.2:70627077-70627096 None:intergenic 25.0%
!! ACTGTTGCATATTTGTATTT+TGG - chr5.2:70626173-70626192 MS.gene55183:CDS 25.0%
!! AGAATTTTGTGTTCTCATTT+AGG - chr5.2:70625989-70626008 MS.gene55183:intron 25.0%
!! ATTTTCAACGAACAAAAAAG+AGG + chr5.2:70627041-70627060 None:intergenic 25.0%
!! TGGGTGATTATAATTTTCAA+TGG + chr5.2:70627920-70627939 None:intergenic 25.0%
!! TTTTTATCAACACAACTGTT+TGG - chr5.2:70627076-70627095 MS.gene55183:intron 25.0%
!! TTTTTGTGTCATATTCTTAC+AGG - chr5.2:70626221-70626240 MS.gene55183:intron 25.0%
!!! TAAAATATTTTGACCCTTGT+TGG - chr5.2:70627154-70627173 MS.gene55183:intron 25.0%
!!! TTCATCTAAGTTTTAGAGAT+TGG + chr5.2:70627355-70627374 None:intergenic 25.0%
!!! TTTGAAAGAAGTTCAAGTTT+TGG + chr5.2:70627272-70627291 None:intergenic 25.0%
AAAAATTCCACATGACTGAT+TGG - chr5.2:70628082-70628101 MS.gene55183:CDS 30.0%
AGCGCAACAGTTAAATATTA+AGG + chr5.2:70626605-70626624 None:intergenic 30.0%
ATAACATTGGAATGGAAACA+AGG + chr5.2:70626341-70626360 None:intergenic 30.0%
ATACATGGAATTCCATTTAC+TGG + chr5.2:70627853-70627872 None:intergenic 30.0%
CAATTACTTGAGTTATAGTC+AGG - chr5.2:70627306-70627325 MS.gene55183:intron 30.0%
CACCAAATATTAGTGTCTTT+GGG + chr5.2:70626531-70626550 None:intergenic 30.0%
CACGTTATTATCAGAAAACA+TGG - chr5.2:70627580-70627599 MS.gene55183:intron 30.0%
CTGACTATAACTCAAGTAAT+TGG + chr5.2:70627308-70627327 None:intergenic 30.0%
GTAATATCTTCAAAGTCCTA+AGG - chr5.2:70627107-70627126 MS.gene55183:intron 30.0%
GTGTAATTTATCTCTCTTTC+TGG - chr5.2:70626367-70626386 MS.gene55183:intron 30.0%
TGTTGTCTACAATTACAATG+CGG + chr5.2:70627807-70627826 None:intergenic 30.0%
TTGAGTTATAGTCAGGTAAT+AGG - chr5.2:70627313-70627332 MS.gene55183:intron 30.0%
TTGTCTATTATGTCAACTAG+CGG + chr5.2:70626257-70626276 None:intergenic 30.0%
TTTGTATTGCAACCAGTAAA+TGG - chr5.2:70627838-70627857 MS.gene55183:CDS 30.0%
! AAAAGTGTAAATACAGGAGA+TGG + chr5.2:70627987-70628006 None:intergenic 30.0%
! GCTGATAAAAGTGTAAATAC+AGG + chr5.2:70627993-70628012 None:intergenic 30.0%
! TGGAATTTTTCATAGAGCAA+AGG + chr5.2:70628072-70628091 None:intergenic 30.0%
!! AACAGTGAAGCTTAGTTTTT+AGG + chr5.2:70626159-70626178 None:intergenic 30.0%
!! AGAACACAAAATTCTAGTTC+TGG + chr5.2:70625984-70626003 None:intergenic 30.0%
!! TATGGATTGGGATTTAATAG+AGG + chr5.2:70627524-70627543 None:intergenic 30.0%
!! TGGTTTGAATTGGTTTGATA+TGG - chr5.2:70625911-70625930 MS.gene55183:CDS 30.0%
AACGAACAAAAAAGAGGTTG+AGG + chr5.2:70627035-70627054 None:intergenic 35.0%
ATACAGACAGACATATGGAT+TGG + chr5.2:70627537-70627556 None:intergenic 35.0%
CACCCAAAGACACTAATATT+TGG - chr5.2:70626526-70626545 MS.gene55183:intron 35.0%
CTGGCTATAGATCAATAACA+CGG - chr5.2:70627461-70627480 MS.gene55183:intron 35.0%
GATTCAGTTTACGACTTTAC+CGG - chr5.2:70626285-70626304 MS.gene55183:intron 35.0%
GCACCAAATATTAGTGTCTT+TGG + chr5.2:70626532-70626551 None:intergenic 35.0%
GCTAGTTGACATAATAGACA+AGG - chr5.2:70626256-70626275 MS.gene55183:intron 35.0%
TACAGACAGACATATGGATT+GGG + chr5.2:70627536-70627555 None:intergenic 35.0%
TAGTCAGGTAATAGGTAACT+AGG - chr5.2:70627321-70627340 MS.gene55183:intron 35.0%
TCCAACTTATAGAGAAGATG+AGG + chr5.2:70626471-70626490 None:intergenic 35.0%
TCCTCATCTTCTCTATAAGT+TGG - chr5.2:70626467-70626486 MS.gene55183:intron 35.0%
TGGCTATAGATCAATAACAC+GGG - chr5.2:70627462-70627481 MS.gene55183:intron 35.0%
TTTCTTGTTCACTCAACACT+CGG - chr5.2:70627006-70627025 MS.gene55183:intron 35.0%
TTTGAGCTTGAAGTTTAGAG+TGG - chr5.2:70627680-70627699 MS.gene55183:CDS 35.0%
! AAGTTTAGAGTGGAGTCTAT+TGG - chr5.2:70627690-70627709 MS.gene55183:CDS 35.0%
! CATGTATTCCATTTTCTGCT+GGG - chr5.2:70627866-70627885 MS.gene55183:CDS 35.0%
! TCAAAAGTACGTAAACCCTT+AGG + chr5.2:70627126-70627145 None:intergenic 35.0%
!! CTAGTTCTGGAAAAGCAATT+AGG + chr5.2:70625971-70625990 None:intergenic 35.0%
!! GAATTTAATGAGAGTACTCG+AGG + chr5.2:70627408-70627427 None:intergenic 35.0%
!! TTCAATGGATTAGTGTACCT+GGG + chr5.2:70627905-70627924 None:intergenic 35.0%
!! TTTCAATGGATTAGTGTACC+TGG + chr5.2:70627906-70627925 None:intergenic 35.0%
AACTTGAGTGCAAGTCTTGA+AGG - chr5.2:70626964-70626983 MS.gene55183:intron 40.0%
ACCTACGTGCTAATTGTTGA+AGG + chr5.2:70626311-70626330 None:intergenic 40.0%
ACTCAAGTAATTGGGATGAG+TGG + chr5.2:70627299-70627318 None:intergenic 40.0%
ATAATCTCGTGGTGCAATAG+AGG - chr5.2:70626785-70626804 MS.gene55183:intron 40.0%
ATATGCTTGCAGGGAACATA+GGG - chr5.2:70627741-70627760 MS.gene55183:intron 40.0%
CCAGCAGAAAATGGAATACA+TGG + chr5.2:70627868-70627887 None:intergenic 40.0%
CTCAAGTAATTGGGATGAGT+GGG + chr5.2:70627298-70627317 None:intergenic 40.0%
GCTTCTGGTAAAACCAACAA+GGG + chr5.2:70627170-70627189 None:intergenic 40.0%
GGAATGTGTATCTTCTGACA+AGG - chr5.2:70625932-70625951 MS.gene55183:CDS 40.0%
GGTTGCAATACAAAGCTGAA+AGG + chr5.2:70627832-70627851 None:intergenic 40.0%
GTAATTCGTTGCTGATAGCT+GGG - chr5.2:70626389-70626408 MS.gene55183:intron 40.0%
GTTAAGAATTCCTTCAACCC+AGG + chr5.2:70626080-70626099 None:intergenic 40.0%
TATATGCTTGCAGGGAACAT+AGG - chr5.2:70627740-70627759 MS.gene55183:intron 40.0%
TCAAGTAATTGGGATGAGTG+GGG + chr5.2:70627297-70627316 None:intergenic 40.0%
TTCAGTGGATGATAATCTCG+TGG - chr5.2:70626633-70626652 MS.gene55183:intron 40.0%
TTGAGTGGATGATAATCTCG+TGG - chr5.2:70626774-70626793 MS.gene55183:intron 40.0%
TTGCTCTTTGCATAGTTGAG+TGG - chr5.2:70626759-70626778 MS.gene55183:intron 40.0%
! AGAGGTGAATCTGGATTAGA+CGG - chr5.2:70627194-70627213 MS.gene55183:intron 40.0%
! CCATGTATTCCATTTTCTGC+TGG - chr5.2:70627865-70627884 MS.gene55183:CDS 40.0%
! TTAGGCGTGTTGGATTTTCA+AGG - chr5.2:70626007-70626026 MS.gene55183:intron 40.0%
!! ACTTAGTGAATTTGCTGACC+TGG - chr5.2:70626103-70626122 MS.gene55183:CDS 40.0%
!! ATAATCTCGTGGTGCTATAG+AGG - chr5.2:70626644-70626663 MS.gene55183:intron 40.0%
!! CAATCGAAGCTGGTTTGAAT+TGG - chr5.2:70625901-70625920 MS.gene55183:CDS 40.0%
!! TGGATTTTCAAGGAAGGAGA+AGG - chr5.2:70626017-70626036 MS.gene55183:intron 40.0%
ACGTGCTAATTGTTGAAGGC+CGG + chr5.2:70626307-70626326 None:intergenic 45.0%
ACTCGAGGAGAACTAAAGAG+TGG + chr5.2:70627393-70627412 None:intergenic 45.0%
AGCTTCCAGTTGGACATTGT+AGG - chr5.2:70628125-70628144 MS.gene55183:CDS 45.0%
CGCTTCTGGTAAAACCAACA+AGG + chr5.2:70627171-70627190 None:intergenic 45.0%
GAAAACATAGACGAACCAGC+TGG + chr5.2:70627230-70627249 None:intergenic 45.0%
GCCTTCAACAATTAGCACGT+AGG - chr5.2:70626307-70626326 MS.gene55183:intron 45.0%
GGAACATAGGGAACATGTCA+AGG - chr5.2:70627753-70627772 MS.gene55183:intron 45.0%
GGATCTTACCTGCATATCGA+AGG - chr5.2:70627774-70627793 MS.gene55183:intron 45.0%
GGTAATTCGTTGCTGATAGC+TGG - chr5.2:70626388-70626407 MS.gene55183:intron 45.0%
GTCAAGATCCTTCGATATGC+AGG + chr5.2:70627785-70627804 None:intergenic 45.0%
GTGTTCTCATTTAGGCGTGT+TGG - chr5.2:70625997-70626016 MS.gene55183:intron 45.0%
TACAATGTCCAACTGGAAGC+TGG + chr5.2:70628126-70628145 None:intergenic 45.0%
TCAGAGAGTTGCTTGAGAAG+TGG + chr5.2:70628033-70628052 None:intergenic 45.0%
TGAGTGCAAGTCTTGAAGGA+TGG - chr5.2:70626968-70626987 MS.gene55183:intron 45.0%
TTACAGTCTTTGAACGGCCT+GGG - chr5.2:70626060-70626079 MS.gene55183:intron 45.0%
! ACTGATTGGTTCCAGAAGCA+AGG - chr5.2:70628096-70628115 MS.gene55183:CDS 45.0%
! CTGATTGGTTCCAGAAGCAA+GGG - chr5.2:70628097-70628116 MS.gene55183:CDS 45.0%
! TCTGGAACCAATCAGTCATG+TGG + chr5.2:70628092-70628111 None:intergenic 45.0%
!! GCGTGTTGGATTTTCAAGGA+AGG - chr5.2:70626011-70626030 MS.gene55183:intron 45.0%
!!! GTTTTACCAGAAGCGCTTAG+AGG - chr5.2:70627176-70627195 MS.gene55183:intron 45.0%
AAGCTGGAATCCCTTGCTTC+TGG + chr5.2:70628110-70628129 None:intergenic 50.0%
AAGGGATTCCAGCTTCCAGT+TGG - chr5.2:70628115-70628134 MS.gene55183:CDS 50.0%
CGAGGAGAACTAAAGAGTGG+AGG + chr5.2:70627390-70627409 None:intergenic 50.0%
CGTTCTCAAGCAATCGAAGC+TGG - chr5.2:70625891-70625910 MS.gene55183:CDS 50.0%
GAGTCGAGACCATTGAATCG+TGG - chr5.2:70626489-70626508 MS.gene55183:intron 50.0%
GATTCACCTCTAAGCGCTTC+TGG + chr5.2:70627185-70627204 None:intergenic 50.0%
GTTACAGTCTTTGAACGGCC+TGG - chr5.2:70626059-70626078 MS.gene55183:intron 50.0%
TCAGTGCTGCCACGATTCAA+TGG + chr5.2:70626501-70626520 None:intergenic 50.0%
TGTGGATGCCCAGCAGAAAA+TGG + chr5.2:70627877-70627896 None:intergenic 50.0%
TTGCGCTTTGCGTAGTTCAG+TGG - chr5.2:70626618-70626637 MS.gene55183:intron 50.0%
! GAAGCGCTTAGAGGTGAATC+TGG - chr5.2:70627185-70627204 MS.gene55183:intron 50.0%
! TAGTGTACCTGGGTGTCATG+TGG + chr5.2:70627895-70627914 None:intergenic 50.0%
!! TGACCTGGTGCTGTTTACTG+CGG - chr5.2:70626118-70626137 MS.gene55183:CDS 50.0%
CTGTTTACTGCGGGTCTCGA+AGG - chr5.2:70626128-70626147 MS.gene55183:CDS 55.0%
GACGGACAAAACTGTCCAGC+TGG - chr5.2:70627212-70627231 MS.gene55183:intron 55.0%
GCTTGAGAACGTAGTGCAGC+TGG + chr5.2:70625882-70625901 None:intergenic 55.0%
! CTTTGAACGGCCTGGGTTGA+AGG - chr5.2:70626067-70626086 MS.gene55183:CDS 55.0%
!! GACCTGGTGCTGTTTACTGC+GGG - chr5.2:70626119-70626138 MS.gene55183:CDS 55.0%
GACCCGCAGTAAACAGCACC+AGG + chr5.2:70626124-70626143 None:intergenic 60.0%
TGGGCATCCACATGACACCC+AGG - chr5.2:70627885-70627904 MS.gene55183:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 70625825 70628146 70625825 ID=MS.gene55183
chr5.2 mRNA 70625825 70628146 70625825 ID=MS.gene55183.t1;Parent=MS.gene55183
chr5.2 exon 70628018 70628146 70628018 ID=MS.gene55183.t1.exon1;Parent=MS.gene55183.t1
chr5.2 CDS 70628018 70628146 70628018 ID=cds.MS.gene55183.t1;Parent=MS.gene55183.t1
chr5.2 exon 70627822 70627942 70627822 ID=MS.gene55183.t1.exon2;Parent=MS.gene55183.t1
chr5.2 CDS 70627822 70627942 70627822 ID=cds.MS.gene55183.t1;Parent=MS.gene55183.t1
chr5.2 exon 70627647 70627728 70627647 ID=MS.gene55183.t1.exon3;Parent=MS.gene55183.t1
chr5.2 CDS 70627647 70627728 70627647 ID=cds.MS.gene55183.t1;Parent=MS.gene55183.t1
chr5.2 exon 70626065 70626218 70626065 ID=MS.gene55183.t1.exon4;Parent=MS.gene55183.t1
chr5.2 CDS 70626065 70626218 70626065 ID=cds.MS.gene55183.t1;Parent=MS.gene55183.t1
chr5.2 exon 70625825 70625959 70625825 ID=MS.gene55183.t1.exon5;Parent=MS.gene55183.t1
chr5.2 CDS 70625825 70625959 70625825 ID=cds.MS.gene55183.t1;Parent=MS.gene55183.t1
Gene Sequence

>MS.gene55183

GTAGTACTTGACTTGGATGAAACACTTGTATGTGCATACGAGACATCAAGTCTGCCAGCTGCACTACGTTCTCAAGCAATCGAAGCTGGTTTGAATTGGTTTGATATGGAATGTGTATCTTCTGACAAGGTATGTTACTTATGCCTAATTGCTTTTCCAGAACTAGAATTTTGTGTTCTCATTTAGGCGTGTTGGATTTTCAAGGAAGGAGAAGGAAGACCAAAAATTAATTATGTTACAGTCTTTGAACGGCCTGGGTTGAAGGAATTCTTAACGAAACTTAGTGAATTTGCTGACCTGGTGCTGTTTACTGCGGGTCTCGAAGGTTTCGCCTAAAAACTAAGCTTCACTGTTGCATATTTGTATTTTGGCAATTCTTTAAATATTTCTGAATGATTTTTGTGTCATATTCTTACAGGCTATGCTAGACCGCTAGTTGACATAATAGACAAGGAAAATCGATTCAGTTTACGACTTTACCGGCCTTCAACAATTAGCACGTAGGTGCTTCTGCCTTGTTTCCATTCCAATGTTATATATTTGTGTAATTTATCTCTCTTTCTGGTAATTCGTTGCTGATAGCTGGGAAATATATCAGAATTATGTTTTGCTGATAGATGTTTGTATATTCTTCATGTTCTATCCTCATCTTCTCTATAAGTTGGAGTCGAGACCATTGAATCGTGGCAGCACTGATAGAACACCCAAAGACACTAATATTTGGTGCACATACATTGCATTCATATAATATCACTTGACTCTTTCTGATAGAATGAACCTTAATATTTAACTGTTGCGCTTTGCGTAGTTCAGTGGATGATAATCTCGTGGTGCTATAGAGGAACTATGCTGCAATAAGCCTCCTTAGTTAATTATTATAAATGTCTTATTTAACTTGACTCTTTCTGATAAAATGAACCTTAATATTTAACTGTTGCTCTTTGCATAGTTGAGTGGATGATAATCTCGTGGTGCAATAGAGGAACTATGCCACAATAAGTCTCTTTAGTTAATTATAAATGTCTTATTTAATTTTTCTTTTCAGACTCACTTGTACATATATAGCTATATTATACTTAGACATTTATAGTTGTGATATTTATATGTTTTGATGTTACCTTATTAATTATAGTGCTTACAACTTGAGTGCAAGTCTTGAAGGATGGTACAGTTTTTGTTAATTTCTTGTTCACTCAACACTCGGTTTCCTCAACCTCTTTTTTGTTCGTTGAAAATTTGGTTCACTCAACCTTTTTATCAACACAACTGTTTGGAAGCTTTTGTAATATCTTCAAAGTCCTAAGGGTTTACGTACTTTTGATTTTATGGTAAAATATTTTGACCCTTGTTGGTTTTACCAGAAGCGCTTAGAGGTGAATCTGGATTAGACGGACAAAACTGTCCAGCTGGTTCGTCTATGTTTTCACTTTTAGTAGATTTGTTACCAAAACTTGAACTTCTTTCAAAATCCCCACTCATCCCAATTACTTGAGTTATAGTCAGGTAATAGGTAACTAGGACTTCATTCCAATCTCTAAAACTTAGATGAAATAAATTATATTCCTCCACTCTTTAGTTCTCCTCGAGTACTCTCATTAAATTCAACTGTTGAGATCATACTATCAAATTAGAACTACTGGCTATAGATCAATAACACGGGACTGTTGTTATTTAGACAAAATTAATAGATTTCTAGCCTCTATTAAATCCCAATCCATATGTCTGTCTGTATTTAAAATATCATGGTTTCTTTTTCACGTTATTATCAGAAAACATGGAGTTTCTCTGTAGATTTTTTTGACATTGTGTTATTATTAGTATGAAACCTTTCTCGAATTTTACAATTATTTATGTTTTTGAGCTTGAAGTTTAGAGTGGAGTCTATTGGACGAATTCCATGCATTCTTATAAATGTTATATGCTTGCAGGGAACATAGGGAACATGTCAAGGATCTTACCTGCATATCGAAGGATCTTGACCGCATTGTAATTGTAGACAACAATCCTTTCAGCTTTGTATTGCAACCAGTAAATGGAATTCCATGTATTCCATTTTCTGCTGGGCATCCACATGACACCCAGGTACACTAATCCATTGAAAATTATAATCACCCATAAAAAAATAAAATCACCCATCTAGTATTCTTATGTTTTACTCACCATCTCCTGTATTTACACTTTTATCAGCTTCTAGATGTCATTCTTCCACTTCTCAAGCAACTCTCTGAGCAGAATGATGTAAGACCTTTGCTCTATGAAAAATTCCACATGACTGATTGGTTCCAGAAGCAAGGGATTCCAGCTTCCAGTTGGACATTGTAG
Protein sequence

>MS.gene55183.t1

VVLDLDETLVCAYETSSLPAALRSQAIEAGLNWFDMECVSSDKEGEGRPKINYVTVFERPGLKEFLTKLSEFADLVLFTAGLEGYARPLVDIIDKENRFSLRLYRPSTISTEHREHVKDLTCISKDLDRIVIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHMTDWFQKQGIPASSWTL