Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55298.t1 | PNY16011.1 | 70.6 | 377 | 111 | 0 | 1 | 377 | 541 | 917 | 1.60E-168 | 602.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55298.t1 | Q54ND3 | 45.9 | 98 | 53 | 0 | 455 | 552 | 63 | 160 | 1.3e-17 | 92.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55298.t1 | A0A392M3L5 | 80.5 | 339 | 66 | 0 | 38 | 376 | 1 | 339 | 8.6e-172 | 613.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene55298 | 0.801882 | 7.30E-49 | -1.69E-46 |
MS.gene053900 | MS.gene55298 | 0.835227 | 1.90E-56 | -1.69E-46 |
MS.gene055694 | MS.gene55298 | 0.822799 | 1.95E-53 | -1.69E-46 |
MS.gene05894 | MS.gene55298 | 0.805007 | 1.64E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55298.t1 | MTR_1g054775 | 56.136 | 383 | 110 | 2 | 1 | 383 | 649 | 973 | 2.34e-138 | 436 |
MS.gene55298.t1 | MTR_5g042620 | 95.455 | 110 | 5 | 0 | 454 | 563 | 42 | 151 | 1.84e-68 | 218 |
MS.gene55298.t1 | MTR_1g051330 | 26.385 | 379 | 249 | 6 | 4 | 376 | 233 | 587 | 1.01e-39 | 154 |
MS.gene55298.t1 | MTR_0111s0070 | 29.288 | 379 | 224 | 8 | 6 | 376 | 224 | 566 | 1.79e-39 | 152 |
MS.gene55298.t1 | MTR_8g442690 | 32.281 | 285 | 180 | 6 | 6 | 281 | 49 | 329 | 1.43e-37 | 145 |
MS.gene55298.t1 | MTR_4g020630 | 28.460 | 383 | 243 | 12 | 4 | 376 | 22 | 383 | 3.52e-36 | 142 |
MS.gene55298.t1 | MTR_4g122570 | 37.438 | 203 | 125 | 2 | 61 | 262 | 326 | 527 | 4.10e-34 | 136 |
MS.gene55298.t1 | MTR_1g059490 | 29.286 | 280 | 164 | 6 | 6 | 276 | 299 | 553 | 1.61e-28 | 120 |
MS.gene55298.t1 | MTR_8g098280 | 31.111 | 270 | 171 | 6 | 6 | 265 | 106 | 370 | 1.28e-23 | 103 |
MS.gene55298.t1 | MTR_4g104480 | 30.729 | 192 | 130 | 3 | 182 | 371 | 159 | 349 | 4.54e-22 | 98.2 |
MS.gene55298.t1 | MTR_3g074540 | 39.450 | 109 | 62 | 1 | 280 | 388 | 23 | 127 | 5.36e-22 | 92.4 |
MS.gene55298.t1 | MTR_7g057470 | 26.343 | 391 | 242 | 14 | 6 | 377 | 315 | 678 | 1.12e-21 | 99.8 |
MS.gene55298.t1 | MTR_7g057490 | 26.343 | 391 | 242 | 14 | 6 | 377 | 315 | 678 | 1.12e-21 | 99.8 |
MS.gene55298.t1 | MTR_0044s0090 | 30.909 | 220 | 139 | 6 | 70 | 280 | 6 | 221 | 1.04e-20 | 91.3 |
MS.gene55298.t1 | MTR_6g025095 | 31.507 | 219 | 135 | 6 | 168 | 375 | 50 | 264 | 1.76e-20 | 94.0 |
MS.gene55298.t1 | MTR_5g058210 | 26.316 | 247 | 147 | 4 | 6 | 251 | 65 | 277 | 9.14e-20 | 90.5 |
MS.gene55298.t1 | MTR_8g463110 | 26.616 | 263 | 173 | 6 | 63 | 316 | 137 | 388 | 1.03e-19 | 93.6 |
MS.gene55298.t1 | MTR_0098s0090 | 30.412 | 194 | 132 | 3 | 174 | 365 | 98 | 290 | 2.21e-18 | 86.3 |
MS.gene55298.t1 | MTR_0665s0030 | 34.884 | 129 | 83 | 1 | 6 | 134 | 65 | 192 | 7.55e-18 | 83.2 |
MS.gene55298.t1 | MTR_0036s0160 | 30.769 | 143 | 98 | 1 | 101 | 243 | 3 | 144 | 1.26e-17 | 82.8 |
MS.gene55298.t1 | MTR_8g019640 | 19.916 | 477 | 254 | 9 | 28 | 483 | 7 | 376 | 2.41e-17 | 84.7 |
MS.gene55298.t1 | MTR_0042s0130 | 28.796 | 191 | 130 | 4 | 4 | 190 | 117 | 305 | 2.87e-17 | 84.0 |
MS.gene55298.t1 | MTR_2g055450 | 31.250 | 208 | 122 | 5 | 4 | 205 | 134 | 326 | 8.40e-17 | 83.2 |
MS.gene55298.t1 | MTR_7g015270 | 31.159 | 138 | 89 | 3 | 242 | 376 | 97 | 231 | 2.93e-16 | 79.0 |
MS.gene55298.t1 | MTR_0001s0070 | 32.414 | 145 | 96 | 2 | 6 | 150 | 65 | 207 | 2.05e-15 | 75.9 |
MS.gene55298.t1 | MTR_6g009010 | 34.132 | 167 | 90 | 5 | 4 | 168 | 101 | 249 | 4.08e-15 | 76.3 |
MS.gene55298.t1 | MTR_6g046587 | 29.605 | 152 | 106 | 1 | 4 | 155 | 128 | 278 | 4.15e-15 | 76.3 |
MS.gene55298.t1 | MTR_2g046450 | 29.412 | 187 | 117 | 4 | 13 | 193 | 238 | 415 | 5.09e-15 | 77.8 |
MS.gene55298.t1 | MTR_7g056353 | 34.483 | 145 | 75 | 3 | 145 | 283 | 354 | 484 | 5.43e-15 | 78.2 |
MS.gene55298.t1 | MTR_7g083690 | 24.339 | 378 | 234 | 14 | 4 | 365 | 707 | 1048 | 1.09e-14 | 78.2 |
MS.gene55298.t1 | MTR_4g017890 | 27.545 | 167 | 112 | 4 | 5 | 168 | 74 | 234 | 1.52e-14 | 75.1 |
MS.gene55298.t1 | MTR_6g034215 | 26.587 | 252 | 157 | 6 | 1 | 248 | 97 | 324 | 5.07e-14 | 73.9 |
MS.gene55298.t1 | MTR_7g032505 | 28.824 | 170 | 112 | 5 | 85 | 247 | 39 | 206 | 5.50e-14 | 72.0 |
MS.gene55298.t1 | MTR_5g021380 | 22.194 | 392 | 249 | 14 | 9 | 371 | 612 | 976 | 1.18e-13 | 74.7 |
MS.gene55298.t1 | MTR_1g100687 | 27.027 | 222 | 153 | 6 | 4 | 219 | 14 | 232 | 2.89e-13 | 70.1 |
MS.gene55298.t1 | MTR_6g034715 | 31.034 | 145 | 93 | 3 | 4 | 143 | 6 | 148 | 3.44e-13 | 68.2 |
MS.gene55298.t1 | MTR_8g470880 | 31.579 | 152 | 102 | 2 | 4 | 154 | 373 | 523 | 7.87e-13 | 71.2 |
MS.gene55298.t1 | MTR_2g018005 | 32.331 | 133 | 87 | 2 | 3 | 134 | 99 | 229 | 6.50e-12 | 65.9 |
MS.gene55298.t1 | MTR_3g436680 | 24.783 | 230 | 139 | 8 | 81 | 302 | 7 | 210 | 6.86e-12 | 68.6 |
MS.gene55298.t1 | MTR_6g016175 | 22.222 | 324 | 210 | 10 | 2 | 315 | 98 | 389 | 8.04e-12 | 68.6 |
MS.gene55298.t1 | MTR_2g078880 | 32.331 | 133 | 72 | 3 | 4 | 135 | 77 | 192 | 4.36e-11 | 63.2 |
MS.gene55298.t1 | MTR_8g467090 | 31.200 | 125 | 79 | 2 | 93 | 211 | 251 | 374 | 7.51e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55298.t1 | AT1G26660 | 54.167 | 120 | 55 | 0 | 443 | 562 | 56 | 175 | 1.76e-38 | 139 |
MS.gene55298.t1 | AT1G26660 | 57.798 | 109 | 46 | 0 | 454 | 562 | 42 | 150 | 3.53e-37 | 135 |
MS.gene55298.t1 | AT1G43760 | 26.632 | 383 | 255 | 8 | 37 | 400 | 222 | 597 | 2.57e-26 | 114 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGAAAGTACCAGTTTAATT+TGG | 0.139711 | 5.2:+32040960 | None:intergenic |
CTTTCTTGCATTCTAAAATT+TGG | 0.150946 | 5.2:+32055234 | None:intergenic |
ATGGAGGAGTTCATCCTTTC+AGG | 0.158720 | 5.2:-32055817 | MS.gene55298:CDS |
TTTATCAAGAAGAGTGTTTA+TGG | 0.162326 | 5.2:-32055532 | MS.gene55298:CDS |
CATCTTCTCCAGGAGATTTA+TGG | 0.163796 | 5.2:+32055192 | None:intergenic |
TGAGAGATGGTACTGGAATT+TGG | 0.168167 | 5.2:-32055406 | MS.gene55298:CDS |
CCTGGTTTACATACTCAAAA+AGG | 0.189343 | 5.2:+32055120 | None:intergenic |
TTCAAACTTCTCTAGATCTT+TGG | 0.229593 | 5.2:-32049860 | MS.gene55298:intron |
TCCATTGACTGCGCGACTTC+TGG | 0.241854 | 5.2:+32055507 | None:intergenic |
ATTCAAAATAGTCCGCATTA+TGG | 0.252606 | 5.2:-32055614 | MS.gene55298:CDS |
GAGCTCTTAGCCAGGTTAAA+TGG | 0.293211 | 5.2:-32055638 | MS.gene55298:CDS |
CGAAAGTACCAGTTTAATTT+GGG | 0.310369 | 5.2:+32040961 | None:intergenic |
ACAAATATGTGTTGTGTATT+GGG | 0.324130 | 5.2:+32045106 | None:intergenic |
GAAAGTTTGTGGATCAAATC+AGG | 0.332609 | 5.2:+32055728 | None:intergenic |
ATCTTCTCCAGGAGATTTAT+GGG | 0.347015 | 5.2:+32055193 | None:intergenic |
TTGTTAGAGGTTCACACTAT+AGG | 0.359150 | 5.2:-32056022 | MS.gene55298:CDS |
GAGAGATGGTACTGGAATTT+GGG | 0.373911 | 5.2:-32055405 | MS.gene55298:CDS |
GTAGACTAGTGGCAGAGAAT+TGG | 0.380953 | 5.2:-32055760 | MS.gene55298:CDS |
GGAGCTTGAACACGACGATT+TGG | 0.385821 | 5.2:+32050740 | None:intergenic |
ACCGAGAACATGTTGTTACT+TGG | 0.386167 | 5.2:-32055310 | MS.gene55298:CDS |
CACAAATATGTGTTGTGTAT+TGG | 0.387605 | 5.2:+32045105 | None:intergenic |
TCAATTAAAGTACTGGAATC+AGG | 0.388124 | 5.2:-32055693 | MS.gene55298:CDS |
AAATATCAAAATCTCCGTTC+TGG | 0.390804 | 5.2:+32040083 | None:intergenic |
TGCATTCTAAAATTTGGATA+GGG | 0.402161 | 5.2:+32055240 | None:intergenic |
ATTTATTGTATTTGCTAAAG+TGG | 0.402204 | 5.2:-32049767 | MS.gene55298:CDS |
CCACAGTCTCCCAACATTGT+TGG | 0.403658 | 5.2:+32055150 | None:intergenic |
TAATGACTGTAATTTGTTAG+AGG | 0.404581 | 5.2:-32056035 | MS.gene55298:CDS |
AATCAAAGCCCAAATTAAAC+TGG | 0.407072 | 5.2:-32040969 | MS.gene55298:intron |
CCCTTTAGTGATTCTTTCTG+AGG | 0.408463 | 5.2:-32055852 | MS.gene55298:CDS |
TTCAAAATAGTCCGCATTAT+GGG | 0.408992 | 5.2:-32055613 | MS.gene55298:CDS |
TGACCTTGGCGAAACCTTCA+TGG | 0.417923 | 5.2:+32055900 | None:intergenic |
TTTAAACTTCATAGAGAAAA+GGG | 0.419027 | 5.2:-32045038 | MS.gene55298:CDS |
GAAAGATCTCCAGGGTCAAT+TGG | 0.419973 | 5.2:-32055564 | MS.gene55298:CDS |
CTTTAAACTTCATAGAGAAA+AGG | 0.422552 | 5.2:-32045039 | MS.gene55298:CDS |
TACTGGAATCAGGATACCTT+TGG | 0.426652 | 5.2:-32055683 | MS.gene55298:CDS |
CTGAGAACTATGGTCAATCT+TGG | 0.430993 | 5.2:-32045616 | MS.gene55298:CDS |
CAACACATATTTGTGGATAT+AGG | 0.432464 | 5.2:-32045097 | MS.gene55298:CDS |
GATTCCATGTGGAGTTTACC+TGG | 0.442171 | 5.2:-32045069 | MS.gene55298:CDS |
TCAAAATCTCCGTTCTGGTA+AGG | 0.444234 | 5.2:+32040088 | None:intergenic |
TCTGGTAAGGGTTTCTCAGC+TGG | 0.445514 | 5.2:+32040101 | None:intergenic |
CTTTAATTGAGTAGTGAGGT+TGG | 0.448986 | 5.2:+32055706 | None:intergenic |
CTGTCATGCCCATTCCACTT+TGG | 0.449565 | 5.2:+32055977 | None:intergenic |
TTTATTGTATTTGCTAAAGT+GGG | 0.450941 | 5.2:-32049766 | MS.gene55298:CDS |
TAATTTAGAGAAAGATCTCC+AGG | 0.452428 | 5.2:-32055573 | MS.gene55298:CDS |
TTGCATTCTAAAATTTGGAT+AGG | 0.452923 | 5.2:+32055239 | None:intergenic |
TGAAAAGATCAATATAGAAC+TGG | 0.453391 | 5.2:+32055348 | None:intergenic |
GAAATCACCCATCATTATCC+AGG | 0.453954 | 5.2:+32056138 | None:intergenic |
TGGTAACGCTATTCTTCTCT+AGG | 0.454954 | 5.2:+32045641 | None:intergenic |
TCCAAGTAACAACATGTTCT+CGG | 0.455686 | 5.2:+32055309 | None:intergenic |
TCACTACTCAATTAAAGTAC+TGG | 0.463334 | 5.2:-32055700 | MS.gene55298:CDS |
GAGCATCTTCTGACGTCCAC+TGG | 0.464262 | 5.2:+32056076 | None:intergenic |
TCCAGAAGTCGCGCAGTCAA+TGG | 0.467116 | 5.2:-32055508 | MS.gene55298:CDS |
CAAAATCTCCGTTCTGGTAA+GGG | 0.467609 | 5.2:+32040089 | None:intergenic |
CATAAATCTCCTGGAGAAGA+TGG | 0.469747 | 5.2:-32055191 | MS.gene55298:CDS |
GGAGAGGGCCAAAGTGGAAT+GGG | 0.472268 | 5.2:-32055985 | MS.gene55298:CDS |
CTATAGGAACAAAGTTTACA+TGG | 0.480611 | 5.2:-32056006 | MS.gene55298:CDS |
ACAAAAGCTTTCAAGCTCTC+AGG | 0.484709 | 5.2:+32055374 | None:intergenic |
GTGATGGTCTGATTGAACTC+TGG | 0.489920 | 5.2:+32055874 | None:intergenic |
CGTTACCAGTCTGAGAACTA+TGG | 0.494311 | 5.2:-32045626 | MS.gene55298:CDS |
ATGGGTCCCCATAAATCTCC+TGG | 0.495063 | 5.2:-32055200 | MS.gene55298:CDS |
GTCTAAATGCAGGTTTGTGA+AGG | 0.496060 | 5.2:-32040146 | MS.gene55298:intron |
GTGTTCTTTGTAATGTGGCT+TGG | 0.500178 | 5.2:-32055934 | MS.gene55298:CDS |
CCTTTAGTGATTCTTTCTGA+GGG | 0.501258 | 5.2:-32055851 | MS.gene55298:CDS |
CCTCAGAAAGAATCACTAAA+GGG | 0.505719 | 5.2:+32055852 | None:intergenic |
TCAAGAGCCCTGGATAATGA+TGG | 0.510984 | 5.2:-32056146 | MS.gene55298:CDS |
TGATGGTCTGATTGAACTCT+GGG | 0.511478 | 5.2:+32055875 | None:intergenic |
TAGTGAGGTTGGAAAGTTTG+TGG | 0.511673 | 5.2:+32055717 | None:intergenic |
TCATCCGCTTTGCACCGTCT+TGG | 0.512843 | 5.2:-32050766 | MS.gene55298:CDS |
GCGGATGACGACGCAGAAGA+AGG | 0.513073 | 5.2:+32050781 | None:intergenic |
CCGCTTGAAAATATTTCCAA+AGG | 0.519817 | 5.2:+32055667 | None:intergenic |
ACGAACCGGAGAGAGGACTT+TGG | 0.520705 | 5.2:+32050708 | None:intergenic |
TGGAGAGGGCCAAAGTGGAA+TGG | 0.522679 | 5.2:-32055986 | MS.gene55298:CDS |
GATGAGCAGAACGGCGGCGT+CGG | 0.526425 | 5.2:+32050805 | None:intergenic |
CATATTTGTGGATATAGGCA+TGG | 0.529826 | 5.2:-32045092 | MS.gene55298:CDS |
CTAATAGTATTCAAGAGCCC+TGG | 0.537084 | 5.2:-32056156 | MS.gene55298:CDS |
CCCTCAGAAAGAATCACTAA+AGG | 0.538487 | 5.2:+32055851 | None:intergenic |
GCATTCTAAAATTTGGATAG+GGG | 0.540523 | 5.2:+32055241 | None:intergenic |
TTGTCCTTGAGAGATGGTAC+TGG | 0.541090 | 5.2:-32055413 | MS.gene55298:CDS |
CAATACACAACACATATTTG+TGG | 0.545294 | 5.2:-32045104 | MS.gene55298:CDS |
TCTGAGGGTGTGCGTTACAA+TGG | 0.547512 | 5.2:-32055836 | MS.gene55298:CDS |
AGAATGAGAGACGTGATACA+TGG | 0.547969 | 5.2:-32056198 | MS.gene55298:CDS |
TGGCGTCTTAAATTCCATGA+AGG | 0.549418 | 5.2:-32055914 | MS.gene55298:CDS |
GGAAGAAAGAGCTCTTAGCC+AGG | 0.550448 | 5.2:-32055646 | MS.gene55298:CDS |
GCAGGATAACCATCTTCTCC+AGG | 0.552119 | 5.2:+32055182 | None:intergenic |
AAGAGAGGGACATGGATCCT+TGG | 0.553174 | 5.2:-32056252 | None:intergenic |
TGTGTATTGCAGGCAGATAG+AGG | 0.562643 | 5.2:-32041014 | MS.gene55298:intron |
CGCAGTCAATGGATTGGTGA+TGG | 0.569648 | 5.2:-32055497 | MS.gene55298:CDS |
TCTAAATGCAGGTTTGTGAA+GGG | 0.571040 | 5.2:-32040145 | MS.gene55298:intron |
ATATTTGTGGATATAGGCAT+GGG | 0.572746 | 5.2:-32045091 | MS.gene55298:CDS |
TGATCGTGTTCTTTGTAATG+TGG | 0.573790 | 5.2:-32055939 | MS.gene55298:CDS |
TTGAACTCTGGGAATGACCT+TGG | 0.578384 | 5.2:+32055886 | None:intergenic |
GAAAACCAAAGTCCTCTCTC+CGG | 0.578898 | 5.2:-32050713 | MS.gene55298:intron |
GGAACAAAGTTTACATGGAG+AGG | 0.579202 | 5.2:-32056001 | MS.gene55298:CDS |
CAAGAGCCCTGGATAATGAT+GGG | 0.583238 | 5.2:-32056145 | MS.gene55298:CDS |
CTTTCAGGTTTGAGTCTGCG+TGG | 0.583271 | 5.2:-32055802 | MS.gene55298:CDS |
AAAGAATCACTAAAGGGTGA+TGG | 0.587453 | 5.2:+32055858 | None:intergenic |
AAAGTTTGTGGATCAAATCA+GGG | 0.593948 | 5.2:+32055729 | None:intergenic |
CCAACAATGTTGGGAGACTG+TGG | 0.597610 | 5.2:-32055150 | MS.gene55298:CDS |
AAGATCTTGTCCTTGAGAGA+TGG | 0.597833 | 5.2:-32055419 | MS.gene55298:CDS |
TTTCAGGTTTGAGTCTGCGT+GGG | 0.599365 | 5.2:-32055801 | MS.gene55298:CDS |
GAAGAAGGCGATGAGCAGAA+CGG | 0.601800 | 5.2:+32050796 | None:intergenic |
AGAGAGAACGAACCGGAGAG+AGG | 0.602806 | 5.2:+32050701 | None:intergenic |
GAACAAAGTTTACATGGAGA+GGG | 0.604012 | 5.2:-32056000 | MS.gene55298:CDS |
AAGTCGCGCAGTCAATGGAT+TGG | 0.604048 | 5.2:-32055503 | MS.gene55298:CDS |
TATGGTCAATCTTGGCTCTG+AGG | 0.604686 | 5.2:-32045608 | MS.gene55298:CDS |
GGATCCTTGGTTACTTACAG+TGG | 0.606154 | 5.2:-32056239 | MS.gene55298:CDS |
AGTACTTTAATTGAGTAGTG+AGG | 0.606955 | 5.2:+32055702 | None:intergenic |
CTGAGAAACCCTTACCAGAA+CGG | 0.607409 | 5.2:-32040097 | MS.gene55298:CDS |
GAGGGTGTGCGTTACAATGG+AGG | 0.610253 | 5.2:-32055833 | MS.gene55298:CDS |
AATTCCAGTACCATCTCTCA+AGG | 0.610537 | 5.2:+32055409 | None:intergenic |
CACGCAGACTCAAACCTGAA+AGG | 0.614715 | 5.2:+32055803 | None:intergenic |
GAAGTTTAAAGCTTCAGACC+AGG | 0.615102 | 5.2:+32045051 | None:intergenic |
ATTGACCATAGTTCTCAGAC+TGG | 0.615714 | 5.2:+32045621 | None:intergenic |
CTAAAGTGGGAAATAATGCA+AGG | 0.620027 | 5.2:-32049753 | MS.gene55298:intron |
ATTCCATGAAGGTTTCGCCA+AGG | 0.622321 | 5.2:-32055903 | MS.gene55298:CDS |
GCGTAATCTCCAATTGACCC+TGG | 0.624459 | 5.2:+32055555 | None:intergenic |
CGACGATTTGGCGACCAAGA+CGG | 0.627790 | 5.2:+32050752 | None:intergenic |
AAATCACCCATCATTATCCA+GGG | 0.629090 | 5.2:+32056139 | None:intergenic |
TTACATGGAGAGGGCCAAAG+TGG | 0.643740 | 5.2:-32055991 | MS.gene55298:CDS |
TAAACCACTGTAAGTAACCA+AGG | 0.643871 | 5.2:+32056235 | None:intergenic |
CAGACCAGGTAAACTCCACA+TGG | 0.645057 | 5.2:+32045065 | None:intergenic |
TCTTCTCCAGGAGATTTATG+GGG | 0.670392 | 5.2:+32055194 | None:intergenic |
AAAGGGAAGAAAAGATCACA+AGG | 0.677027 | 5.2:-32045021 | MS.gene55298:intron |
TCACGTCTCTCATTCTCACG+TGG | 0.677083 | 5.2:+32056205 | None:intergenic |
AATTTAGAGAAAGATCTCCA+GGG | 0.699150 | 5.2:-32055572 | MS.gene55298:CDS |
CTAGTGGCAGAGAATTGGAA+CGG | 0.699787 | 5.2:-32055755 | MS.gene55298:CDS |
TATAGGCATGGGATTCCATG+TGG | 0.700388 | 5.2:-32045080 | MS.gene55298:CDS |
CAATTCGATTCAGAAATGTG+TGG | 0.705140 | 5.2:+32049836 | None:intergenic |
GAAGGCGATGAGCAGAACGG+CGG | 0.708887 | 5.2:+32050799 | None:intergenic |
AAGTTACTATACCCATAATG+CGG | 0.723082 | 5.2:+32055602 | None:intergenic |
GCGACCAAGACGGTGCAAAG+CGG | 0.729151 | 5.2:+32050762 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 32040088 | 32056263 | 32040088 | ID=MS.gene55298 |
chr5.2 | mRNA | 32040088 | 32056263 | 32040088 | ID=MS.gene55298.t1;Parent=MS.gene55298 |
chr5.2 | exon | 32055134 | 32056263 | 32055134 | ID=MS.gene55298.t1.exon1;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32055134 | 32056263 | 32055134 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32050714 | 32050827 | 32050714 | ID=MS.gene55298.t1.exon2;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32050714 | 32050827 | 32050714 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32049754 | 32049867 | 32049754 | ID=MS.gene55298.t1.exon3;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32049754 | 32049867 | 32049754 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32045589 | 32045690 | 32045589 | ID=MS.gene55298.t1.exon4;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32045589 | 32045690 | 32045589 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32045022 | 32045129 | 32045022 | ID=MS.gene55298.t1.exon5;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32045022 | 32045129 | 32045022 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32040970 | 32041024 | 32040970 | ID=MS.gene55298.t1.exon6;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32040970 | 32041024 | 32040970 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
chr5.2 | exon | 32040088 | 32040156 | 32040088 | ID=MS.gene55298.t1.exon7;Parent=MS.gene55298.t1 |
chr5.2 | CDS | 32040088 | 32040156 | 32040088 | ID=cds.MS.gene55298.t1;Parent=MS.gene55298.t1 |
Gene Sequence |
Protein sequence |