AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55885

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55885.t1 MTR_8g101890 97.541 122 3 0 1 122 1 122 2.03e-87 249
MS.gene55885.t1 MTR_8g101880 79.167 120 25 0 3 122 2 121 2.68e-71 209
MS.gene55885.t1 MTR_2g100380 63.115 122 45 0 1 122 96 217 2.15e-54 169
MS.gene55885.t1 MTR_5g062980 80.882 68 9 1 59 122 1 68 1.15e-33 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55885.t1 AT4G26210 82.500 120 21 0 1 120 1 120 1.18e-71 210
MS.gene55885.t1 AT4G26210 82.500 120 21 0 1 120 1 120 1.18e-71 210
MS.gene55885.t1 AT4G29480 80.000 120 24 0 1 120 1 120 5.66e-70 206
MS.gene55885.t1 AT2G19680 81.667 120 22 0 1 120 1 120 2.78e-69 204
MS.gene55885.t1 AT2G19680 81.667 120 22 0 1 120 1 120 2.78e-69 204

Find 28 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATGTTTCGACACAAAT+TGG 0.188882 4.3:+3497136 None:intergenic
CGGTTCGTTGTGAGGCCTTC+TGG 0.193200 4.3:-3494713 MS.gene55885:CDS
TTGATTATGTCAAGCATTTA+TGG 0.216096 4.3:-3494683 MS.gene55885:CDS
GAGGAACAGGCAAGACTTAA+AGG 0.283541 4.3:-3494661 MS.gene55885:CDS
GCAGGCATTGCTGCTTTGTT+TGG 0.306097 4.3:-3494630 MS.gene55885:CDS
CATTGCTGCTTTGTTTGGCT+TGG 0.320848 4.3:-3494625 MS.gene55885:CDS
TCAAGCATTTATGGAGGAAC+AGG 0.424738 4.3:-3494674 MS.gene55885:CDS
TCCATGTTTCGACACAAATT+GGG 0.433923 4.3:+3497137 None:intergenic
TGGTTACTACAAGCAATTGT+TGG 0.474911 4.3:-3497112 MS.gene55885:CDS
GGAAGGGGATTTACTTTCAC+CGG 0.482572 4.3:-3494567 MS.gene55885:CDS
TATTGTGCTGGTGAGATTGT+TGG 0.487898 4.3:-3494588 MS.gene55885:CDS
GACTTAAAGGTTGAAGATGC+AGG 0.493818 4.3:-3494648 MS.gene55885:CDS
CAGCATTCCGGTTCGTTGTG+AGG 0.494395 4.3:-3494721 MS.gene55885:CDS
TTTGTGTCGAAACATGGAAC+TGG 0.497463 4.3:-3497132 MS.gene55885:CDS
CAGAAGGCCTCACAACGAAC+CGG 0.500486 4.3:+3494714 None:intergenic
TTGCATTTCTCAATAGTAGC+AGG 0.501942 4.3:+3497063 None:intergenic
TTCAATGGCGTCGAAGTTGA+AGG 0.508306 4.3:-3497187 None:intergenic
TACTTTACACACGCCTTGCT+AGG 0.522831 4.3:-3497023 MS.gene55885:intron
GCTGGTGAGATTGTTGGAAG+GGG 0.524753 4.3:-3494582 MS.gene55885:CDS
TGCTATGCATGGTATTGTGC+TGG 0.532565 4.3:-3494600 MS.gene55885:CDS
TGCTGGTGAGATTGTTGGAA+GGG 0.539629 4.3:-3494583 MS.gene55885:CDS
ATAAATTATATAACCTAGCA+AGG 0.541358 4.3:+3497010 None:intergenic
TCCCAATTTGTGTCGAAACA+TGG 0.545137 4.3:-3497138 MS.gene55885:CDS
TCGTTGTGAGGCCTTCTGGA+AGG 0.586771 4.3:-3494709 MS.gene55885:CDS
TTGGCTTGGAATGCTATGCA+TGG 0.606806 4.3:-3494611 MS.gene55885:CDS
ATAATCAAGTTCCTTCCAGA+AGG 0.620068 4.3:+3494698 None:intergenic
ATTATGTCAAGCATTTATGG+AGG 0.623689 4.3:-3494680 MS.gene55885:CDS
GTGCTGGTGAGATTGTTGGA+AGG 0.633241 4.3:-3494584 MS.gene55885:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTAAAATAAAAAAT+AGG - chr4.3:3495500-3495519 MS.gene55885:intron 0.0%
!! AAAAAAAAATATATTATGTC+AGG + chr4.3:3496264-3496283 None:intergenic 10.0%
!! AAATTAAAATAAAAAATAGG+TGG - chr4.3:3495503-3495522 MS.gene55885:intron 10.0%
!!! TTTTAATAGTTATTCTTATT+AGG - chr4.3:3495184-3495203 MS.gene55885:intron 10.0%
!! AGTGTAAATAAAATAAAGGA+AGG - chr4.3:3495818-3495837 MS.gene55885:intron 20.0%
!! ATAAATTATATAACCTAGCA+AGG + chr4.3:3494730-3494749 None:intergenic 20.0%
!! CAATATATTAAGAAGAAAGT+TGG + chr4.3:3494756-3494775 None:intergenic 20.0%
!! GTTTAATGCGAAAAAAAAAA+AGG - chr4.3:3494913-3494932 MS.gene55885:intron 20.0%
!! TAATCATTAGAAAGAAAGTT+GGG - chr4.3:3495709-3495728 MS.gene55885:intron 20.0%
!! TATAAACAATCTATGGATAT+CGG + chr4.3:3496686-3496705 None:intergenic 20.0%
!! TTAATCATTAGAAAGAAAGT+TGG - chr4.3:3495708-3495727 MS.gene55885:intron 20.0%
!! TTATGAGTATAAACAATCTA+TGG + chr4.3:3496693-3496712 None:intergenic 20.0%
!!! AACTAGTTTTAAAATGATGT+TGG + chr4.3:3496809-3496828 None:intergenic 20.0%
!!! AAGGAGTGTAAATAAAATAA+AGG - chr4.3:3495814-3495833 MS.gene55885:intron 20.0%
!!! ACATTTTTTATCTTGACATA+TGG - chr4.3:3496519-3496538 MS.gene55885:intron 20.0%
!!! ATTTTAAAGAAAATGAATGG+TGG - chr4.3:3496483-3496502 MS.gene55885:intron 20.0%
!!! CCAATTTTAAAGAAAATGAA+TGG - chr4.3:3496480-3496499 MS.gene55885:intron 20.0%
!!! CCATTCATTTTCTTTAAAAT+TGG + chr4.3:3496483-3496502 None:intergenic 20.0%
! AAAATTGTCTTACTCTTCAT+TGG + chr4.3:3495573-3495592 None:intergenic 25.0%
! AAGGATAATTCTATAGTCAA+AGG - chr4.3:3495837-3495856 MS.gene55885:intron 25.0%
! AATCAACATATTATAGACCA+AGG + chr4.3:3494807-3494826 None:intergenic 25.0%
! ATCAAACTTTATGAAAGACT+TGG - chr4.3:3496150-3496169 MS.gene55885:intron 25.0%
! ATCAACATATTATAGACCAA+GGG + chr4.3:3494806-3494825 None:intergenic 25.0%
! CAAACATGAAAAAACTAAAG+TGG + chr4.3:3496548-3496567 None:intergenic 25.0%
! CTTCATAATCTATCATTGTA+TGG - chr4.3:3496578-3496597 MS.gene55885:intron 25.0%
! GAGAAGAAATGAAAAAACAT+TGG + chr4.3:3494964-3494983 None:intergenic 25.0%
! TAACTCTAAATCTCTCATAA+TGG + chr4.3:3495895-3495914 None:intergenic 25.0%
! TATATTATGTCAGGTTACTT+TGG + chr4.3:3496255-3496274 None:intergenic 25.0%
! TGAATTAGCTAAACAATCAT+GGG - chr4.3:3496872-3496891 MS.gene55885:intron 25.0%
! TGTGAAGATTTACAATAATG+TGG - chr4.3:3496642-3496661 MS.gene55885:intron 25.0%
! TTGATTATGTCAAGCATTTA+TGG - chr4.3:3497054-3497073 MS.gene55885:CDS 25.0%
! TTTAGCTAATTCACTAAAGA+AGG + chr4.3:3496865-3496884 None:intergenic 25.0%
! TTTGCTTCAAATAATTGCTT+TGG - chr4.3:3495279-3495298 MS.gene55885:intron 25.0%
!! AATTAAATTTTGCAGCATTC+CGG - chr4.3:3497004-3497023 MS.gene55885:intron 25.0%
!! TTTAAAATGATGTTGGAATG+TGG + chr4.3:3496802-3496821 None:intergenic 25.0%
!! TTTACCAAAGTCACATTTTT+AGG - chr4.3:3496282-3496301 MS.gene55885:intron 25.0%
!!! CAAGTTGACTATTTATTTTG+TGG + chr4.3:3496455-3496474 None:intergenic 25.0%
!!! TCACATTTTTAGGAGTAAAT+GGG - chr4.3:3496292-3496311 MS.gene55885:intron 25.0%
AAAAGGACTTTAAGTGGTAT+GGG - chr4.3:3496399-3496418 MS.gene55885:intron 30.0%
AACATGTTTAATTGAAGTGC+TGG + chr4.3:3495258-3495277 None:intergenic 30.0%
AAGCAGTGATTTACAGTTAA+AGG + chr4.3:3495002-3495021 None:intergenic 30.0%
ACCACAGAAAACAGAAAAAA+TGG + chr4.3:3496368-3496387 None:intergenic 30.0%
AGCAGTGATTTACAGTTAAA+GGG + chr4.3:3495001-3495020 None:intergenic 30.0%
ATTATGTCAAGCATTTATGG+AGG - chr4.3:3497057-3497076 MS.gene55885:CDS 30.0%
CATCACTTATAGTTAAACCA+AGG - chr4.3:3496208-3496227 MS.gene55885:intron 30.0%
CTTATAGTTAAACCAAGGTT+TGG - chr4.3:3496213-3496232 MS.gene55885:intron 30.0%
GAATAATGTAACGTAAGAAG+TGG + chr4.3:3495461-3495480 None:intergenic 30.0%
GAATTAGCTAAACAATCATG+GGG - chr4.3:3496873-3496892 MS.gene55885:intron 30.0%
GGAATTAATCAAGACAAGAT+AGG - chr4.3:3495678-3495697 MS.gene55885:intron 30.0%
GGTAAAACAAAAAATGCCTT+GGG - chr4.3:3496337-3496356 MS.gene55885:intron 30.0%
GGTTGGATTTAATTCATACA+GGG - chr4.3:3495924-3495943 MS.gene55885:intron 30.0%
GTAAGTCAACAACAGATAAA+GGG + chr4.3:3495122-3495141 None:intergenic 30.0%
GTGAATTAGCTAAACAATCA+TGG - chr4.3:3496871-3496890 MS.gene55885:intron 30.0%
TAAAGCAAAAGGACTTTAAG+TGG - chr4.3:3496393-3496412 MS.gene55885:intron 30.0%
TAATCAAGACAAGATAGGAT+AGG - chr4.3:3495683-3495702 MS.gene55885:intron 30.0%
TACTCCTAAAAATGTGACTT+TGG + chr4.3:3496289-3496308 None:intergenic 30.0%
TCTATAGTCAAAGGTAGAAT+GGG - chr4.3:3495846-3495865 MS.gene55885:intron 30.0%
TGGTTGGATTTAATTCATAC+AGG - chr4.3:3495923-3495942 MS.gene55885:intron 30.0%
TTATGAGCTGATCATATTCA+AGG + chr4.3:3496616-3496635 None:intergenic 30.0%
TTCAAACATCAAACAGAACT+GGG + chr4.3:3496760-3496779 None:intergenic 30.0%
TTCTATAGTCAAAGGTAGAA+TGG - chr4.3:3495845-3495864 MS.gene55885:intron 30.0%
! TATGAGAGATTTAGAGTTAC+TGG - chr4.3:3495896-3495915 MS.gene55885:intron 30.0%
!! AAATGAATGGTGGTTGTTTT+TGG - chr4.3:3496493-3496512 MS.gene55885:intron 30.0%
!! AGAAGCACTGAAAACTAAAT+TGG + chr4.3:3496960-3496979 None:intergenic 30.0%
!! GTCACATTTTTAGGAGTAAA+TGG - chr4.3:3496291-3496310 MS.gene55885:intron 30.0%
AAACCAAGGCTTCATAAACT+TGG - chr4.3:3495076-3495095 MS.gene55885:intron 35.0%
AAAGGACTTTAAGTGGTATG+GGG - chr4.3:3496400-3496419 MS.gene55885:intron 35.0%
ACAGATAAAGGGTTATGGTT+TGG + chr4.3:3495111-3495130 None:intergenic 35.0%
AGTGTTGCAACAATGAGAAT+AGG - chr4.3:3495651-3495670 MS.gene55885:intron 35.0%
ATAATCAAGTTCCTTCCAGA+AGG + chr4.3:3497042-3497061 None:intergenic 35.0%
CAAAAGGACTTTAAGTGGTA+TGG - chr4.3:3496398-3496417 MS.gene55885:intron 35.0%
CAACAACAGATAAAGGGTTA+TGG + chr4.3:3495116-3495135 None:intergenic 35.0%
CGTAAGTCAACAACAGATAA+AGG + chr4.3:3495123-3495142 None:intergenic 35.0%
GAACTACAGTAGCATTACTA+AGG - chr4.3:3495795-3495814 MS.gene55885:intron 35.0%
GCAACAATGAGAATAGGAAT+AGG - chr4.3:3495657-3495676 MS.gene55885:intron 35.0%
GGGTAAAACAAAAAATGCCT+TGG - chr4.3:3496336-3496355 MS.gene55885:intron 35.0%
GTTCAAACATCAAACAGAAC+TGG + chr4.3:3496761-3496780 None:intergenic 35.0%
TAAACAATCATGGGGAAATG+TGG - chr4.3:3496881-3496900 MS.gene55885:intron 35.0%
TAATGTAACGTAAGAAGTGG+CGG + chr4.3:3495458-3495477 None:intergenic 35.0%
TAGCATTTCAATGAGCAGTT+TGG - chr4.3:3495023-3495042 MS.gene55885:intron 35.0%
TAGTTGTCAGGGAAAAACTT+TGG - chr4.3:3495985-3496004 MS.gene55885:intron 35.0%
TATCACTCCATCATTGTATC+TGG + chr4.3:3495533-3495552 None:intergenic 35.0%
TCATTAGAAAGAAAGTTGGG+TGG - chr4.3:3495712-3495731 MS.gene55885:intron 35.0%
TCCATGTTTCGACACAAATT+GGG + chr4.3:3494603-3494622 None:intergenic 35.0%
TGCTCTACATTCAGTTAAGT+TGG + chr4.3:3495390-3495409 None:intergenic 35.0%
TGGTTACTACAAGCAATTGT+TGG - chr4.3:3494625-3494644 MS.gene55885:CDS 35.0%
TGTGGTTAGTGTAAAGCAAA+AGG - chr4.3:3496382-3496401 MS.gene55885:intron 35.0%
TTCCATGTTTCGACACAAAT+TGG + chr4.3:3494604-3494623 None:intergenic 35.0%
TTCTCAACCTGTACATGTTT+GGG - chr4.3:3496052-3496071 MS.gene55885:intron 35.0%
TTGCATTTCTCAATAGTAGC+AGG + chr4.3:3494677-3494696 None:intergenic 35.0%
TTTCTCAACCTGTACATGTT+TGG - chr4.3:3496051-3496070 MS.gene55885:intron 35.0%
! ATACAATGATGGAGTGATAG+AGG - chr4.3:3495534-3495553 MS.gene55885:intron 35.0%
! ATGGGATCAAGGAAAAGTAT+AGG - chr4.3:3495864-3495883 MS.gene55885:intron 35.0%
! ATTTTACCTCCTTCAAATGG+GGG - chr4.3:3496315-3496334 MS.gene55885:intron 35.0%
! GATTTTACCTCCTTCAAATG+GGG - chr4.3:3496314-3496333 MS.gene55885:intron 35.0%
! GGATTTTACCTCCTTCAAAT+GGG - chr4.3:3496313-3496332 MS.gene55885:intron 35.0%
! TGATTGGTAATACGATCAGT+CGG - chr4.3:3494856-3494875 MS.gene55885:intron 35.0%
! TTGATTTTGCTTCCAAACCT+TGG + chr4.3:3496228-3496247 None:intergenic 35.0%
! TTTTCTACATTGCAGTAGCA+AGG - chr4.3:3495213-3495232 MS.gene55885:intron 35.0%
! TTTTTCCCTGACAACTAGAT+GGG + chr4.3:3495982-3496001 None:intergenic 35.0%
!! TCAGTTAAGTTGGTTCACTA+TGG + chr4.3:3495380-3495399 None:intergenic 35.0%
!! TGAGCACGTTGATTTATGTT+TGG - chr4.3:3495303-3495322 MS.gene55885:intron 35.0%
!! TTAAGTTGGTTCACTATGGT+AGG + chr4.3:3495376-3495395 None:intergenic 35.0%
!!! GCCATTTTTTCTGTTTTCTG+TGG - chr4.3:3496364-3496383 MS.gene55885:intron 35.0%
ACATCTGTCAAGTCTGTTCT+AGG - chr4.3:3496934-3496953 MS.gene55885:intron 40.0%
ACTAGATGGGGTAAACAACA+TGG + chr4.3:3495969-3495988 None:intergenic 40.0%
AGAAAAAATGGCACTTCCCA+AGG + chr4.3:3496356-3496375 None:intergenic 40.0%
AGCTACGTCTTAGGTGATTT+GGG - chr4.3:3495759-3495778 MS.gene55885:intron 40.0%
ATCAACGAAACGCTGCTAAA+AGG + chr4.3:3495339-3495358 None:intergenic 40.0%
GAAACCCTGAATACAAACCA+AGG - chr4.3:3495062-3495081 MS.gene55885:intron 40.0%
GACTTAAAGGTTGAAGATGC+AGG - chr4.3:3497089-3497108 MS.gene55885:CDS 40.0%
GATCAGTCGGCAGTTTAATT+CGG - chr4.3:3494869-3494888 MS.gene55885:intron 40.0%
GATGTGTGTGACATTTGATC+AGG + chr4.3:3496919-3496938 None:intergenic 40.0%
GTACCAAGTTTATGAAGCCT+TGG + chr4.3:3495082-3495101 None:intergenic 40.0%
GTGATGTTAGACAACCAGAT+CGG - chr4.3:3494831-3494850 MS.gene55885:intron 40.0%
TATTACCAATCAGTCCGATC+TGG + chr4.3:3494848-3494867 None:intergenic 40.0%
TCAAAGGTAGAATGGGATCA+AGG - chr4.3:3495853-3495872 MS.gene55885:intron 40.0%
TCAAGCATTTATGGAGGAAC+AGG - chr4.3:3497063-3497082 MS.gene55885:CDS 40.0%
TCATTCACCCAAACATGTAC+AGG + chr4.3:3496062-3496081 None:intergenic 40.0%
TCCCAATTTGTGTCGAAACA+TGG - chr4.3:3494599-3494618 MS.gene55885:CDS 40.0%
TCTATGTTCATGTATGCCCT+TGG - chr4.3:3494787-3494806 MS.gene55885:intron 40.0%
TTTAATTCATACAGGGCACG+AGG - chr4.3:3495931-3495950 MS.gene55885:intron 40.0%
TTTACCCCATCTAGTTGTCA+GGG - chr4.3:3495974-3495993 MS.gene55885:intron 40.0%
TTTGTGTCGAAACATGGAAC+TGG - chr4.3:3494605-3494624 MS.gene55885:CDS 40.0%
! AGACAATTTTACCGTGCATC+TGG - chr4.3:3495583-3495602 MS.gene55885:intron 40.0%
! GACAATTTTACCGTGCATCT+GGG - chr4.3:3495584-3495603 MS.gene55885:intron 40.0%
! GATTTAGAGTTACTGGTCTG+TGG - chr4.3:3495903-3495922 MS.gene55885:intron 40.0%
! GGGATTTTACCTCCTTCAAA+TGG - chr4.3:3496312-3496331 MS.gene55885:intron 40.0%
! GTTTTTCCCTGACAACTAGA+TGG + chr4.3:3495983-3496002 None:intergenic 40.0%
! TATTGTGCTGGTGAGATTGT+TGG - chr4.3:3497149-3497168 MS.gene55885:CDS 40.0%
! TGGTTTGTATTCAGGGTTTC+TGG + chr4.3:3495062-3495081 None:intergenic 40.0%
! TGTACAGGTTGAGAAAGCAA+AGG + chr4.3:3496047-3496066 None:intergenic 40.0%
! TTAGGTGATTTGGGCATGTA+TGG - chr4.3:3495768-3495787 MS.gene55885:intron 40.0%
! TTTTACCTCCTTCAAATGGG+GGG - chr4.3:3496316-3496335 MS.gene55885:intron 40.0%
! TTTTCCCTGACAACTAGATG+GGG + chr4.3:3495981-3496000 None:intergenic 40.0%
!! GAAGCCTTGGTTTGTATTCA+GGG + chr4.3:3495069-3495088 None:intergenic 40.0%
!! GCACGTTGATTTATGTTTGG+TGG - chr4.3:3495306-3495325 MS.gene55885:intron 40.0%
!! TGAAGCCTTGGTTTGTATTC+AGG + chr4.3:3495070-3495089 None:intergenic 40.0%
!! TTGTTTTACCCCCCATTTGA+AGG + chr4.3:3496327-3496346 None:intergenic 40.0%
CACTCCATCATTGTATCTGG+TGG + chr4.3:3495530-3495549 None:intergenic 45.0%
CTCTGCCATCCTTTCTATGA+GGG + chr4.3:3495741-3495760 None:intergenic 45.0%
GAGCTACGTCTTAGGTGATT+TGG - chr4.3:3495758-3495777 MS.gene55885:intron 45.0%
GAGGAACAGGCAAGACTTAA+AGG - chr4.3:3497076-3497095 MS.gene55885:CDS 45.0%
GGAAGGGGATTTACTTTCAC+CGG - chr4.3:3497170-3497189 MS.gene55885:CDS 45.0%
GGTTTCCCTCATAGAAAGGA+TGG - chr4.3:3495733-3495752 MS.gene55885:intron 45.0%
GTTTACCCCATCTAGTTGTC+AGG - chr4.3:3495973-3495992 MS.gene55885:intron 45.0%
TACTTTACACACGCCTTGCT+AGG - chr4.3:3494714-3494733 MS.gene55885:CDS 45.0%
TCTTCATTGGATCCTACGCT+AGG + chr4.3:3495560-3495579 None:intergenic 45.0%
TGCTATGCATGGTATTGTGC+TGG - chr4.3:3497137-3497156 MS.gene55885:CDS 45.0%
TGCTGGTGAGATTGTTGGAA+GGG - chr4.3:3497154-3497173 MS.gene55885:CDS 45.0%
TGGTCCACCAGATACAATGA+TGG - chr4.3:3495523-3495542 MS.gene55885:intron 45.0%
! TAGAGTTACTGGTCTGTGGT+TGG - chr4.3:3495907-3495926 MS.gene55885:intron 45.0%
! TTTTACCCCCCATTTGAAGG+AGG + chr4.3:3496324-3496343 None:intergenic 45.0%
!! CATTGCTGCTTTGTTTGGCT+TGG - chr4.3:3497112-3497131 MS.gene55885:CDS 45.0%
!! TTGGCTTGGAATGCTATGCA+TGG - chr4.3:3497126-3497145 MS.gene55885:CDS 45.0%
GACAACCAGATCGGACTGAT+TGG - chr4.3:3494840-3494859 MS.gene55885:intron 50.0%
GCTCTGCCATCCTTTCTATG+AGG + chr4.3:3495742-3495761 None:intergenic 50.0%
GCTGGTGAGATTGTTGGAAG+GGG - chr4.3:3497155-3497174 MS.gene55885:CDS 50.0%
GGAGTCCTGCAATGTTGTGT+GGG - chr4.3:3495605-3495624 MS.gene55885:intron 50.0%
GGGTGGTTTCCCTCATAGAA+AGG - chr4.3:3495729-3495748 MS.gene55885:intron 50.0%
GTTGTGTGGGACGAAATGCT+GGG - chr4.3:3495618-3495637 MS.gene55885:intron 50.0%
TGTTGTGTGGGACGAAATGC+TGG - chr4.3:3495617-3495636 MS.gene55885:intron 50.0%
TTCGTCCCACACAACATTGC+AGG + chr4.3:3495613-3495632 None:intergenic 50.0%
! GTGCTGGTGAGATTGTTGGA+AGG - chr4.3:3497153-3497172 MS.gene55885:CDS 50.0%
!! GCAGGCATTGCTGCTTTGTT+TGG - chr4.3:3497107-3497126 MS.gene55885:CDS 50.0%
CAGAAGGCCTCACAACGAAC+CGG + chr4.3:3497026-3497045 None:intergenic 55.0%
GAGTGATAGAGGCCTAGCGT+AGG - chr4.3:3495545-3495564 MS.gene55885:intron 55.0%
GGATGGCAGAGCTACGTCTT+AGG - chr4.3:3495750-3495769 MS.gene55885:intron 55.0%
GGGAGTCCTGCAATGTTGTG+TGG - chr4.3:3495604-3495623 MS.gene55885:intron 55.0%
TCGTTGTGAGGCCTTCTGGA+AGG - chr4.3:3497028-3497047 MS.gene55885:CDS 55.0%
TTGCAGGACTCCCAGATGCA+CGG + chr4.3:3495597-3495616 None:intergenic 55.0%
! CAGCATTCCGGTTCGTTGTG+AGG - chr4.3:3497016-3497035 MS.gene55885:intron 55.0%
CGGTTCGTTGTGAGGCCTTC+TGG - chr4.3:3497024-3497043 MS.gene55885:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 3494554 3497205 3494554 ID=MS.gene55885
chr4.3 mRNA 3494554 3497205 3494554 ID=MS.gene55885.t1;Parent=MS.gene55885
chr4.3 exon 3497024 3497205 3497024 ID=MS.gene55885.t1.exon1;Parent=MS.gene55885.t1
chr4.3 CDS 3497024 3497205 3497024 ID=cds.MS.gene55885.t1;Parent=MS.gene55885.t1
chr4.3 exon 3494554 3494740 3494554 ID=MS.gene55885.t1.exon2;Parent=MS.gene55885.t1
chr4.3 CDS 3494554 3494740 3494554 ID=cds.MS.gene55885.t1;Parent=MS.gene55885.t1
Gene Sequence

>MS.gene55885

ATGGCGTCGAAGTTGAAGGCATTGCAGTCAAAAGCATGTCAAGCATCCCAATTTGTGTCGAAACATGGAACTGGTTACTACAAGCAATTGTTGGAGCAGAACAAGCAATACATTCAAGAGCCTGCTACTATTGAGAAATGCAATCTTCTCGCTAAGCAATTACTTTACACACGCCTTGCTAGGTTATATAATTTATTCTCCAACTTTCTTCTTAATATATTGTGTGCTAAAATTCTATGTTCATGTATGCCCTTGGTCTATAATATGTTGATTTCTAGTGATGTTAGACAACCAGATCGGACTGATTGGTAATACGATCAGTCGGCAGTTTAATTCGGAACTGATAAGAAGTACAATATGTTTAATGCGAAAAAAAAAAAGGATAAAACTCAGATGAAGTGCTATAGCCAATGTTTTTTCATTTCTTCTCTGCAATTCTTCTTTCCCTTTAACTGTAAATCACTGCTTTTAGCATTTCAATGAGCAGTTTGGTTTCAAAGCATTACCAGAAACCCTGAATACAAACCAAGGCTTCATAAACTTGGTACAATACACCAAACCATAACCCTTTATCTGTTGTTGACTTACGTACAATGCAATGAACAACGAATATATAAAATATCTATTTTGTTTTAATAGTTATTCTTATTAGGAGTTGTTTTTCTACATTGCAGTAGCAAGGCATGCATATTTTGTAAATGCCAGCACTTCAATTAAACATGTTTTTTGCTTCAAATAATTGCTTTGGATGAGCACGTTGATTTATGTTTGGTGGCTTAATGCCTTTTAGCAGCGTTTCGTTGATGCGTCTGCTACTTGCCTACCATAGTGAACCAACTTAACTGAATGTAGAGCAATATATTATGTGTGTGCAACTACATAGAAAACTTGCAAGTGCAGACCGCCACTTCTTACGTTACATTATTCTTTGTTCATAGTTTTATTATTAAAATTAAAATAAAAAATAGGTGGTCCACCAGATACAATGATGGAGTGATAGAGGCCTAGCGTAGGATCCAATGAAGAGTAAGACAATTTTACCGTGCATCTGGGAGTCCTGCAATGTTGTGTGGGACGAAATGCTGGGCAGTAAGTTCAGTGTTGCAACAATGAGAATAGGAATAGGAATTAATCAAGACAAGATAGGATAGGAATTAATCATTAGAAAGAAAGTTGGGTGGTTTCCCTCATAGAAAGGATGGCAGAGCTACGTCTTAGGTGATTTGGGCATGTATGGTGAAGAACTACAGTAGCATTACTAAGGAGTGTAAATAAAATAAAGGAAGGATAATTCTATAGTCAAAGGTAGAATGGGATCAAGGAAAAGTATAGGTAAGACCATTATGAGAGATTTAGAGTTACTGGTCTGTGGTTGGATTTAATTCATACAGGGCACGAGGACATTGTTTGAGCCATGTTGTTTACCCCATCTAGTTGTCAGGGAAAAACTTTGGTTGCTGTATTGTTAACTTCTAATATAAGTCTAGCATCCTTTGCTTTCTCAACCTGTACATGTTTGGGTGAATGAATTTGAAAGAAACTGATTCTGTTAAACTGAGCTTGAATTGAAGTGATTTATGTTTGATTGTTTTCTAAATCAAACTTTATGAAAGACTTGGTGTAAATTTTTCAACACAATGCAAAAGCTACTTTTCATCACTTATAGTTAAACCAAGGTTTGGAAGCAAAATCAATGATCCAAAGTAACCTGACATAATATATTTTTTTTTTACCAAAGTCACATTTTTAGGAGTAAATGGGATTTTACCTCCTTCAAATGGGGGGTAAAACAAAAAATGCCTTGGGAAGTGCCATTTTTTCTGTTTTCTGTGGTTAGTGTAAAGCAAAAGGACTTTAAGTGGTATGGGGTGTAGAAATGCATGTGATTTTCTTGATCACCACAAAATAAATAGTCAACTTGACTTGCCAATTTTAAAGAAAATGAATGGTGGTTGTTTTTGGAAAACATTTTTTATCTTGACATATGGCAACCACTTTAGTTTTTTCATGTTTGAAGTTTTTTTCTTCATAATCTATCATTGTATGGTTTGATTATATTCCTTGAATATGATCAGCTCATAATGTGCTTGTGAAGATTTACAATAATGTGGATAATCATGACAATAATGCCGATATCCATAGATTGTTTATACTCATAATATTGTTGTCAAACAACTTGCTGCTTGTAGTTCTTGTGATGAAGCCCAGTTCTGTTTGATGTTTGAACTTGAATTTTGCTTATGCGCCACATTCCAACATCATTTTAAAACTAGTTATGCGTAGCAAATTGTGCAACATATCTTCACAACCTTCTTTAGTGAATTAGCTAAACAATCATGGGGAAATGTGGAAACTTATTCTGCCTGATCAAATGTCACACACATCTGTCAAGTCTGTTCTAGGCCAATTTAGTTTTCAGTGCTTCTGCTTCTCTATATATAACTCACTCTAATTAAATTTTGCAGCATTCCGGTTCGTTGTGAGGCCTTCTGGAAGGAACTTGATTATGTCAAGCATTTATGGAGGAACAGGCAAGACTTAAAGGTTGAAGATGCAGGCATTGCTGCTTTGTTTGGCTTGGAATGCTATGCATGGTATTGTGCTGGTGAGATTGTTGGAAGGGGATTTACTTTCACCGGTTACTCTGTCTGA
Protein sequence

>MS.gene55885.t1

MASKLKALQSKACQASQFVSKHGTGYYKQLLEQNKQYIQEPATIEKCNLLAKQLLYTRLASIPVRCEAFWKELDYVKHLWRNRQDLKVEDAGIAALFGLECYAWYCAGEIVGRGFTFTGYSV