AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55953.t1 MTR_2g033490 93.878 294 17 1 1 293 1 294 4.69e-166 462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55953.t1 AT3G17170 56.790 243 91 3 1 242 1 230 3.43e-88 266

Find 51 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTTATCTTTCTTTC+GGG 0.136122 2.3:+57114211 None:intergenic
TGAATCTGTTCTTCTTAAAA+AGG 0.188788 2.3:-57114138 MS.gene55953:intron
CAGTTTCCACGTCAAGCTTT+AGG 0.189454 2.3:+57113067 None:intergenic
CTTCTTTCTTATCTTTCTTT+CGG 0.224970 2.3:+57114210 None:intergenic
GCCAGTGCTTTCATCTGATT+TGG 0.244957 2.3:+57114169 None:intergenic
TATCGTAGACGACGATGATT+TGG 0.299249 2.3:-57111620 MS.gene55953:CDS
GATGAAGAAAGGTAGTGATT+TGG 0.311635 2.3:+57114302 None:intergenic
AGTTTCCACGTCAAGCTTTA+GGG 0.316767 2.3:+57113068 None:intergenic
ATGAAGAAAGGTAGTGATTT+GGG 0.318693 2.3:+57114303 None:intergenic
GGGAGAAGAAAGGAAGAGTA+TGG 0.343212 2.3:-57111969 MS.gene55953:CDS
GCTTGACGTGGAAACTGATA+TGG 0.365705 2.3:-57113061 MS.gene55953:CDS
CAACGAGTTCAAGACTTTGT+TGG 0.383716 2.3:-57111845 MS.gene55953:CDS
CCAGTGCTTTCATCTGATTT+GGG 0.387549 2.3:+57114170 None:intergenic
CTTCGTCCCTCTTTATCACT+AGG 0.396913 2.3:+57111797 None:intergenic
GGAAGATGGTAAAATTCTTC+CGG 0.409818 2.3:-57113241 MS.gene55953:CDS
AGTATGGAGATTCAGTGATT+GGG 0.412799 2.3:-57111953 MS.gene55953:CDS
GAGTATGGAGATTCAGTGAT+TGG 0.428387 2.3:-57111954 MS.gene55953:CDS
CAGAAGACAGTTGAGGAAGA+TGG 0.433743 2.3:-57113255 MS.gene55953:CDS
GCTGTTAATGAGAAAGTTCA+AGG 0.436751 2.3:-57112486 MS.gene55953:intron
AAGAAGAATTTGATGATGAA+TGG 0.453384 2.3:-57111711 MS.gene55953:CDS
GATGATATTGAGGGCGGTGA+AGG 0.481025 2.3:-57111649 MS.gene55953:CDS
GTATTAAACTCGGGAGGAGG+AGG 0.481879 2.3:+57111757 None:intergenic
AGAAGAATTTGATGATGAAT+GGG 0.503389 2.3:-57111710 MS.gene55953:CDS
TTGGGAAGTTGAAACGAAGA+GGG 0.515458 2.3:+57114321 None:intergenic
ATCTGATTATGATGATATTG+AGG 0.526841 2.3:-57111659 MS.gene55953:CDS
TTCGACACCTAGTGATAAAG+AGG 0.527803 2.3:-57111804 MS.gene55953:CDS
TCATCATCATCTTCAAACTC+CGG 0.543493 2.3:+57113222 None:intergenic
GTTTGATGCTAACATGGCAG+TGG 0.545412 2.3:+57114343 None:intergenic
TCATGAGAAACATGCAGAAG+AGG 0.554875 2.3:-57112514 MS.gene55953:CDS
TATGATGAAGATGAGGAAGA+TGG 0.559348 2.3:-57111682 MS.gene55953:CDS
GTATGGAGATTCAGTGATTG+GGG 0.567959 2.3:-57111952 MS.gene55953:CDS
AAAGTATTAAACTCGGGAGG+AGG 0.569590 2.3:+57111754 None:intergenic
ACTATGGAGGCACTATTCAA+AGG 0.569896 2.3:-57114401 MS.gene55953:CDS
CCCAAATCAGATGAAAGCAC+TGG 0.572848 2.3:-57114170 MS.gene55953:CDS
TCTGATTATGATGATATTGA+GGG 0.573289 2.3:-57111658 MS.gene55953:CDS
AGCAACAAAAGTATTAAACT+CGG 0.581584 2.3:+57111747 None:intergenic
TGATTGGGGTATGAGAAAGT+TGG 0.581664 2.3:-57111938 MS.gene55953:CDS
TCAAGTAAACAATCTCATAG+TGG 0.585631 2.3:+57112538 None:intergenic
AAAACGATGAGGATGAAGAA+AGG 0.586135 2.3:+57114291 None:intergenic
AAGAGGGTTTGATGCTAACA+TGG 0.587929 2.3:+57114337 None:intergenic
CGATGATTTGGAAATATCAG+AGG 0.611516 2.3:-57111608 MS.gene55953:CDS
GCAACAAAAGTATTAAACTC+GGG 0.611767 2.3:+57111748 None:intergenic
TTTGGGAAGTTGAAACGAAG+AGG 0.620047 2.3:+57114320 None:intergenic
TATTAAACTCGGGAGGAGGA+GGG 0.622797 2.3:+57111758 None:intergenic
TGAATCCCTAAAGCTTGACG+TGG 0.629748 2.3:-57113073 MS.gene55953:CDS
GATGATTTGGAAATATCAGA+GGG 0.634837 2.3:-57111607 MS.gene55953:CDS
GGATGAATATGATGAAGATG+AGG 0.661571 2.3:-57111689 MS.gene55953:CDS
ACAAAAGTATTAAACTCGGG+AGG 0.675886 2.3:+57111751 None:intergenic
TCGACACCTAGTGATAAAGA+GGG 0.685347 2.3:-57111803 MS.gene55953:CDS
AAATTGGCGTGAAAACGATG+AGG 0.721233 2.3:+57114280 None:intergenic
GATTATGATGATATTGAGGG+CGG 0.728969 2.3:-57111655 MS.gene55953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAACAAAAATCAAATAA+AGG + chr2.3:57111897-57111916 None:intergenic 10.0%
!! ATAAACAAAAATCAAATAAA+GGG + chr2.3:57111896-57111915 None:intergenic 10.0%
!! CAAATAAAAAAAATTATTAG+AGG + chr2.3:57113326-57113345 None:intergenic 10.0%
!! TTGAGTTTATACTTATAAAT+TGG - chr2.3:57111990-57112009 MS.gene55953:intron 15.0%
!!! TCAAGTTAAAATGATTTTTT+TGG + chr2.3:57113916-57113935 None:intergenic 15.0%
!! AAACTCAATAAATCTTCAAA+AGG + chr2.3:57111978-57111997 None:intergenic 20.0%
!! AACTCAATAAATCTTCAAAA+GGG + chr2.3:57111977-57111996 None:intergenic 20.0%
!! AATACAGAACAATAATGATT+TGG + chr2.3:57113689-57113708 None:intergenic 20.0%
!! AATTCTAATGAATCTTCAAA+AGG + chr2.3:57112111-57112130 None:intergenic 20.0%
!! AGTATACCAAAATAAATTTG+AGG + chr2.3:57112031-57112050 None:intergenic 20.0%
!! ATAGATTCGAAAAAAATGTA+AGG + chr2.3:57113553-57113572 None:intergenic 20.0%
!! ATGTCACTATTGTTAAATAT+AGG - chr2.3:57113634-57113653 MS.gene55953:intron 20.0%
!! ATTCTAATGAATCTTCAAAA+GGG + chr2.3:57112110-57112129 None:intergenic 20.0%
!! GTATACCAAAATAAATTTGA+GGG + chr2.3:57112030-57112049 None:intergenic 20.0%
!! TACCAAAAAACTAAAACAAA+TGG + chr2.3:57112819-57112838 None:intergenic 20.0%
!! TGTAAACCAAAATGAAAATT+TGG + chr2.3:57112885-57112904 None:intergenic 20.0%
!! TTCTCATTGATATTCAAATT+GGG - chr2.3:57112693-57112712 MS.gene55953:intron 20.0%
!! TTTCAAATTATTAACTGTGT+CGG + chr2.3:57112334-57112353 None:intergenic 20.0%
!! TTTCTCATTGATATTCAAAT+TGG - chr2.3:57112692-57112711 MS.gene55953:intron 20.0%
!! TTTGTAAACATTATCTAACA+AGG + chr2.3:57113124-57113143 None:intergenic 20.0%
!!! AAAACTAAATTTTGCATACA+AGG + chr2.3:57112559-57112578 None:intergenic 20.0%
!!! AAACTAAATTTTGCATACAA+GGG + chr2.3:57112558-57112577 None:intergenic 20.0%
!!! AAATTTTCATTTTGGTTTAC+AGG - chr2.3:57112884-57112903 MS.gene55953:intron 20.0%
!!! ATTTGTTTTAGTTTTTTGGT+AGG - chr2.3:57112818-57112837 MS.gene55953:intron 20.0%
!!! CTTTTTCCAAATTTTCATTT+TGG - chr2.3:57112876-57112895 MS.gene55953:intron 20.0%
!!! GATGCAATTTTTTTATTCAT+AGG - chr2.3:57113013-57113032 MS.gene55953:intron 20.0%
!!! TAATTTCTGATAGTTTTCAT+TGG - chr2.3:57112064-57112083 MS.gene55953:intron 20.0%
!!! TTCCATTTGTTTTAGTTTTT+TGG - chr2.3:57112814-57112833 MS.gene55953:intron 20.0%
! AAACATACTTCTGATTATTC+TGG - chr2.3:57113952-57113971 MS.gene55953:intron 25.0%
! AATAATTGTATCCACAACAA+AGG + chr2.3:57113839-57113858 None:intergenic 25.0%
! ATCTGATTATGATGATATTG+AGG - chr2.3:57114330-57114349 MS.gene55953:CDS 25.0%
! ATTATCGTCATTATGGTTTA+GGG + chr2.3:57113155-57113174 None:intergenic 25.0%
! CAGTAACATGAAAAACTATT+TGG - chr2.3:57113090-57113109 MS.gene55953:intron 25.0%
! CTTCTTTCTTATCTTTCTTT+CGG + chr2.3:57111782-57111801 None:intergenic 25.0%
! GAAAAAATGACATAATTCAG+CGG - chr2.3:57112350-57112369 MS.gene55953:intron 25.0%
! TAAACATTATCTAACAAGGT+CGG + chr2.3:57113120-57113139 None:intergenic 25.0%
! TAGTACAAAATGTTGTCAAA+TGG - chr2.3:57113717-57113736 MS.gene55953:intron 25.0%
! TCTAATGAACTCATTCTATT+TGG + chr2.3:57113592-57113611 None:intergenic 25.0%
! TCTGATTATGATGATATTGA+GGG - chr2.3:57114331-57114350 MS.gene55953:CDS 25.0%
! TGAATCTGTTCTTCTTAAAA+AGG - chr2.3:57111851-57111870 MS.gene55953:CDS 25.0%
! TTCTTTCTTATCTTTCTTTC+GGG + chr2.3:57111781-57111800 None:intergenic 25.0%
! TTTAATAATCACCTTTGTTG+TGG - chr2.3:57113825-57113844 MS.gene55953:intron 25.0%
! TTTCTCATTGATATTCGATA+TGG - chr2.3:57112620-57112639 MS.gene55953:intron 25.0%
!! AATAAGTGAGAATGATTTTC+TGG + chr2.3:57111751-57111770 None:intergenic 25.0%
!! AATCTTATCTTGTTCTGTTT+TGG - chr2.3:57112189-57112208 MS.gene55953:intron 25.0%
!! ATAAGTGAGAATGATTTTCT+GGG + chr2.3:57111750-57111769 None:intergenic 25.0%
!!! AAGAAGAATTTGATGATGAA+TGG - chr2.3:57114278-57114297 MS.gene55953:CDS 25.0%
!!! AGAAGAATTTGATGATGAAT+GGG - chr2.3:57114279-57114298 MS.gene55953:CDS 25.0%
!!! AGCAACAAAAGTATTAAACT+CGG + chr2.3:57114245-57114264 None:intergenic 25.0%
!!! GGTTATTTTGAAGAGAAAAT+TGG + chr2.3:57111728-57111747 None:intergenic 25.0%
!!! TTTTAAGAAGAACAGATTCA+GGG + chr2.3:57111851-57111870 None:intergenic 25.0%
!!! TTTTTAAGAAGAACAGATTC+AGG + chr2.3:57111852-57111871 None:intergenic 25.0%
ATGAAGAAAGGTAGTGATTT+GGG + chr2.3:57111689-57111708 None:intergenic 30.0%
CACGTTACTGAATCTTTAAA+GGG + chr2.3:57113390-57113409 None:intergenic 30.0%
CATCTAGATTATCGTCATTA+TGG + chr2.3:57113162-57113181 None:intergenic 30.0%
GATTATCGTCATTATGGTTT+AGG + chr2.3:57113156-57113175 None:intergenic 30.0%
GGTTAATTGCAATCTTTGAA+AGG + chr2.3:57113532-57113551 None:intergenic 30.0%
TCAAGTAAACAATCTCATAG+TGG + chr2.3:57113454-57113473 None:intergenic 30.0%
! AAACATTTGCAGACTTTTTG+AGG - chr2.3:57113999-57114018 MS.gene55953:intron 30.0%
! AACATTTGCAGACTTTTTGA+GGG - chr2.3:57114000-57114019 MS.gene55953:intron 30.0%
! ATCCATCTTTTGCTAACTTT+TGG - chr2.3:57113242-57113261 MS.gene55953:CDS 30.0%
! ATTTGACATTAGAGAAGTGT+AGG - chr2.3:57112457-57112476 MS.gene55953:intron 30.0%
! CAATGCCCTCAAATTTATTT+TGG - chr2.3:57112022-57112041 MS.gene55953:intron 30.0%
! GATGATTTGGAAATATCAGA+GGG - chr2.3:57114382-57114401 MS.gene55953:CDS 30.0%
! TAAGTGAGAATGATTTTCTG+GGG + chr2.3:57111749-57111768 None:intergenic 30.0%
!! GCAACAAAAGTATTAAACTC+GGG + chr2.3:57114244-57114263 None:intergenic 30.0%
!!! TAGTTTTTTGGTAGGCTAAA+TGG - chr2.3:57112826-57112845 MS.gene55953:intron 30.0%
!!! TTGTTCTGTTTTGGTTTGAA+GGG - chr2.3:57112198-57112217 MS.gene55953:intron 30.0%
AAAACGATGAGGATGAAGAA+AGG + chr2.3:57111701-57111720 None:intergenic 35.0%
ACATAATTCAGCGGAATCAT+AGG - chr2.3:57112359-57112378 MS.gene55953:intron 35.0%
AGTATGGAGATTCAGTGATT+GGG - chr2.3:57114036-57114055 MS.gene55953:intron 35.0%
ATAAGTCATACACCACAAAG+TGG + chr2.3:57112266-57112285 None:intergenic 35.0%
ATACAAATTTGCCCACTTTG+TGG - chr2.3:57112251-57112270 MS.gene55953:intron 35.0%
CACATGTAATGTTACCACTA+AGG - chr2.3:57112133-57112152 MS.gene55953:intron 35.0%
GATGAAGAAAGGTAGTGATT+TGG + chr2.3:57111690-57111709 None:intergenic 35.0%
GATTATGATGATATTGAGGG+CGG - chr2.3:57114334-57114353 MS.gene55953:CDS 35.0%
GCACGTTACTGAATCTTTAA+AGG + chr2.3:57113391-57113410 None:intergenic 35.0%
GCTGTTAATGAGAAAGTTCA+AGG - chr2.3:57113503-57113522 MS.gene55953:intron 35.0%
GGAAGATGGTAAAATTCTTC+CGG - chr2.3:57112748-57112767 MS.gene55953:intron 35.0%
GGATGAATATGATGAAGATG+AGG - chr2.3:57114300-57114319 MS.gene55953:CDS 35.0%
TAAGTCATACACCACAAAGT+GGG + chr2.3:57112265-57112284 None:intergenic 35.0%
TATGATGAAGATGAGGAAGA+TGG - chr2.3:57114307-57114326 MS.gene55953:CDS 35.0%
TCAACTGTATTGCCAAATTG+CGG + chr2.3:57113775-57113794 None:intergenic 35.0%
TCATCATCATCTTCAAACTC+CGG + chr2.3:57112770-57112789 None:intergenic 35.0%
TGCCAAAAGTTAGCAAAAGA+TGG + chr2.3:57113247-57113266 None:intergenic 35.0%
! ATTAGATTGCCATTTCCATC+TGG - chr2.3:57113606-57113625 MS.gene55953:intron 35.0%
! CGATGATTTGGAAATATCAG+AGG - chr2.3:57114381-57114400 MS.gene55953:CDS 35.0%
! CTAAATTTTGCATACAAGGG+AGG + chr2.3:57112555-57112574 None:intergenic 35.0%
! TCATTTTCAGAAGACAGTTG+AGG - chr2.3:57112727-57112746 MS.gene55953:intron 35.0%
! TTACCACTAAGGAGTTTTCT+TGG - chr2.3:57112144-57112163 MS.gene55953:intron 35.0%
!! ACAAAAGTATTAAACTCGGG+AGG + chr2.3:57114241-57114260 None:intergenic 35.0%
!! CATTTTGATGAACTTCGAGA+TGG - chr2.3:57114108-57114127 MS.gene55953:intron 35.0%
!!! CTTGTTCTGTTTTGGTTTGA+AGG - chr2.3:57112197-57112216 MS.gene55953:intron 35.0%
AAATTGGCGTGAAAACGATG+AGG + chr2.3:57111712-57111731 None:intergenic 40.0%
AAGAGGGTTTGATGCTAACA+TGG + chr2.3:57111655-57111674 None:intergenic 40.0%
AAGATGGATCTAAATCCACC+TGG + chr2.3:57113231-57113250 None:intergenic 40.0%
ACATGAATGCCAGATGGAAA+TGG + chr2.3:57113618-57113637 None:intergenic 40.0%
AGTTTCCACGTCAAGCTTTA+GGG + chr2.3:57112924-57112943 None:intergenic 40.0%
ATAGTGACATGAATGCCAGA+TGG + chr2.3:57113624-57113643 None:intergenic 40.0%
ATGTTATAACCGTGCTCTCT+TGG - chr2.3:57113179-57113198 MS.gene55953:intron 40.0%
CAACGAGTTCAAGACTTTGT+TGG - chr2.3:57114144-57114163 MS.gene55953:CDS 40.0%
CCAGTGCTTTCATCTGATTT+GGG + chr2.3:57111822-57111841 None:intergenic 40.0%
CTTCCAAGAAAACTCCTTAG+TGG + chr2.3:57112150-57112169 None:intergenic 40.0%
GAGTATGGAGATTCAGTGAT+TGG - chr2.3:57114035-57114054 MS.gene55953:intron 40.0%
GGAGAGTAACTCGCTATTTA+GGG - chr2.3:57112219-57112238 MS.gene55953:intron 40.0%
GTATGGAGATTCAGTGATTG+GGG - chr2.3:57114037-57114056 MS.gene55953:intron 40.0%
TATCGTAGACGACGATGATT+TGG - chr2.3:57114369-57114388 MS.gene55953:CDS 40.0%
TCATGAGAAACATGCAGAAG+AGG - chr2.3:57113475-57113494 MS.gene55953:intron 40.0%
TCGACACCTAGTGATAAAGA+GGG - chr2.3:57114186-57114205 MS.gene55953:CDS 40.0%
TGAAGCATAGACACATACAC+CGG - chr2.3:57112292-57112311 MS.gene55953:intron 40.0%
TGATTGGGGTATGAGAAAGT+TGG - chr2.3:57114051-57114070 MS.gene55953:intron 40.0%
TTCGACACCTAGTGATAAAG+AGG - chr2.3:57114185-57114204 MS.gene55953:CDS 40.0%
TTGGGAAGTTGAAACGAAGA+GGG + chr2.3:57111671-57111690 None:intergenic 40.0%
TTTGGGAAGTTGAAACGAAG+AGG + chr2.3:57111672-57111691 None:intergenic 40.0%
TTTGGTAGGCTAAATGGTTC+TGG - chr2.3:57112832-57112851 MS.gene55953:intron 40.0%
! AAAGTATTAAACTCGGGAGG+AGG + chr2.3:57114238-57114257 None:intergenic 40.0%
! GATTTGGTCCAATTCCACTA+CGG + chr2.3:57113673-57113692 None:intergenic 40.0%
! GTAACTCGCTATTTAGGGTA+AGG - chr2.3:57112224-57112243 MS.gene55953:intron 40.0%
!! GACTTTTTGAGGGAGAAGAA+AGG - chr2.3:57114010-57114029 MS.gene55953:intron 40.0%
!! GTGGTTTTTGGAGGTTTAGA+AGG + chr2.3:57111630-57111649 None:intergenic 40.0%
CAGAAGACAGTTGAGGAAGA+TGG - chr2.3:57112734-57112753 MS.gene55953:intron 45.0%
CAGTTTCCACGTCAAGCTTT+AGG + chr2.3:57112925-57112944 None:intergenic 45.0%
CATTGTTGCGTACCGCAATT+TGG - chr2.3:57113760-57113779 MS.gene55953:intron 45.0%
CGATGTGTCAGTATCGTGTT+TGG - chr2.3:57112506-57112525 MS.gene55953:CDS 45.0%
CTTATCAGACATTCACCAGG+TGG - chr2.3:57113213-57113232 MS.gene55953:intron 45.0%
CTTCGTCCCTCTTTATCACT+AGG + chr2.3:57114195-57114214 None:intergenic 45.0%
GCACAGACACTCCTCAAATT+AGG + chr2.3:57112421-57112440 None:intergenic 45.0%
GCCAGTGCTTTCATCTGATT+TGG + chr2.3:57111823-57111842 None:intergenic 45.0%
GCTATAGTGTTATGCCGTAG+TGG - chr2.3:57113656-57113675 MS.gene55953:intron 45.0%
GCTTGACGTGGAAACTGATA+TGG - chr2.3:57112928-57112947 MS.gene55953:intron 45.0%
GGGAGAAGAAAGGAAGAGTA+TGG - chr2.3:57114020-57114039 MS.gene55953:intron 45.0%
GGGAGAGTAACTCGCTATTT+AGG - chr2.3:57112218-57112237 MS.gene55953:intron 45.0%
GTTTGATGCTAACATGGCAG+TGG + chr2.3:57111649-57111668 None:intergenic 45.0%
TATTAAACTCGGGAGGAGGA+GGG + chr2.3:57114234-57114253 None:intergenic 45.0%
TGAATCCCTAAAGCTTGACG+TGG - chr2.3:57112916-57112935 MS.gene55953:intron 45.0%
! CATTATGGTTTAGGGCAGCA+TGG + chr2.3:57113147-57113166 None:intergenic 45.0%
! CCCAAATCAGATGAAAGCAC+TGG - chr2.3:57111819-57111838 MS.gene55953:CDS 45.0%
! CGGAATCATAGGTGTTGTGT+CGG - chr2.3:57112370-57112389 MS.gene55953:intron 45.0%
! GCTAACATGGCAGTGGTTTT+TGG + chr2.3:57111642-57111661 None:intergenic 45.0%
! GGTCTTATCAGACATTCACC+AGG - chr2.3:57113210-57113229 MS.gene55953:intron 45.0%
! GTGTTATGCCGTAGTGGAAT+TGG - chr2.3:57113662-57113681 MS.gene55953:intron 45.0%
!! AACATGGCAGTGGTTTTTGG+AGG + chr2.3:57111639-57111658 None:intergenic 45.0%
AATTAGGCGTGTCCCTGTGT+CGG + chr2.3:57112405-57112424 None:intergenic 50.0%
ACAGGGACACGCCTAATTTG+AGG - chr2.3:57112407-57112426 MS.gene55953:intron 50.0%
GATGATATTGAGGGCGGTGA+AGG - chr2.3:57114340-57114359 MS.gene55953:CDS 50.0%
GTATTAAACTCGGGAGGAGG+AGG + chr2.3:57114235-57114254 None:intergenic 50.0%
! CATAGGTGTTGTGTCGGTGT+CGG - chr2.3:57112376-57112395 MS.gene55953:intron 50.0%
CCAGACTGTCCAAGAGAGCA+CGG + chr2.3:57113191-57113210 None:intergenic 55.0%
CGTGCTCTCTTGGACAGTCT+GGG - chr2.3:57113189-57113208 MS.gene55953:intron 55.0%
CCGTGCTCTCTTGGACAGTC+TGG - chr2.3:57113188-57113207 MS.gene55953:intron 60.0%
CGGCGTGTACGTGTCGTGTC+CGG + chr2.3:57112314-57112333 None:intergenic 65.0%
! CGGTGTCGGACACCGACACA+GGG - chr2.3:57112390-57112409 MS.gene55953:intron 65.0%
!! TCGGTGTCGGACACCGACAC+AGG - chr2.3:57112389-57112408 MS.gene55953:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 57111591 57114420 57111591 ID=MS.gene55953
chr2.3 mRNA 57111591 57114420 57111591 ID=MS.gene55953.t1;Parent=MS.gene55953
chr2.3 exon 57114139 57114420 57114139 ID=MS.gene55953.t1.exon1;Parent=MS.gene55953.t1
chr2.3 CDS 57114139 57114420 57114139 ID=cds.MS.gene55953.t1;Parent=MS.gene55953.t1
chr2.3 exon 57113220 57113274 57113220 ID=MS.gene55953.t1.exon2;Parent=MS.gene55953.t1
chr2.3 CDS 57113220 57113274 57113220 ID=cds.MS.gene55953.t1;Parent=MS.gene55953.t1
chr2.3 exon 57113049 57113105 57113049 ID=MS.gene55953.t1.exon3;Parent=MS.gene55953.t1
chr2.3 CDS 57113049 57113105 57113049 ID=cds.MS.gene55953.t1;Parent=MS.gene55953.t1
chr2.3 exon 57112487 57112564 57112487 ID=MS.gene55953.t1.exon4;Parent=MS.gene55953.t1
chr2.3 CDS 57112487 57112564 57112487 ID=cds.MS.gene55953.t1;Parent=MS.gene55953.t1
chr2.3 exon 57111591 57112000 57111591 ID=MS.gene55953.t1.exon5;Parent=MS.gene55953.t1
chr2.3 CDS 57111591 57112000 57111591 ID=cds.MS.gene55953.t1;Parent=MS.gene55953.t1
Gene Sequence

>MS.gene55953

ATGGAGGCACTATTCAAAGGTTCTTCTTATCTCTTACCTTCTAAACCTCCAAAAACCACTGCCATGTTAGCATCAAACCCTCTTCGTTTCAACTTCCCAAATCACTACCTTTCTTCATCCTCATCGTTTTCACGCCAATTTTCTCTTCAAAATAACCCCAGAAAATCATTCTCACTTATTATGAATGCCCGAAAGAAAGATAAGAAAGAAGATACTCATAGCTTTGTGCCCAAATCAGATGAAAGCACTGGCTTCTTCCCTGAATCTGTTCTTCTTAAAAAGGTTGTTTTTTTTTACACATACCCTTTATTTGATTTTTGTTTATTACTCATTTTAGTGTATTTTTCTTCAATTTTTCTTTGTTTTGTTTTAAGAATTAGATACCCTTTTGAAGATTTATTGAGTTTATACTTATAAATTGGTAGAATTTGCAATGCCCTCAAATTTATTTTGGTATACTATACATTTTAGTGTAATTTCTGATAGTTTTCATTGGTTTCGTTTAAGTATAAGATACCCTTTTGAAGATTCATTAGAATTTGCACATGTAATGTTACCACTAAGGAGTTTTCTTGGAAGCACTTTTTCAATATTACAAAATCTTATCTTGTTCTGTTTTGGTTTGAAGGGAGAGTAACTCGCTATTTAGGGTAAGGAAAAATACAAATTTGCCCACTTTGTGGTGTATGACTTATTAGCTATGAAGCATAGACACATACACCGGACACGACACGTACACGCCGACACAGTTAATAATTTGAAAAAATGACATAATTCAGCGGAATCATAGGTGTTGTGTCGGTGTCGGACACCGACACAGGGACACGCCTAATTTGAGGAGTGTCTGTGCTTCATAGCTTATTAGCATTTGACATTAGAGAAGTGTAGGATTGAGACTAGTTACTTCATAATTGTCGATGTGTCAGTATCGTGTTTGGTGTTTGTGCTTAGATCGTTGTTGCCTCCCTTGTATGCAAAATTTAGTTTTTTTTTTTTTTTTTTTAGTGTCTTATTCTTTGTGAGATGAATTTTCTCATTGATATTCGATATGGTTTTTCAACTGAAATGTATTTTTAATTTTTTATTCTTTATGATATGAATTTTCTCATTGATATTCAAATTGGGTTTTCAACTTGTCATTTTCAGAAGACAGTTGAGGAAGATGGTAAAATTCTTCCGGAGTTTGAAGATGATGATGAAAGTGAGTGATTATTGTTCAGTTATTCCATTTGTTTTAGTTTTTTGGTAGGCTAAATGGTTCTGGATTAATGTTATGAGTTTGTCTCTTTTTCCAAATTTTCATTTTGGTTTACAGGAAAGCTTTATGAATCCCTAAAGCTTGACGTGGAAACTGATATGGACGTTGAACTATGTAAGTAAATACTCTCTTGTTTATGTTAGATGATATGAAACTATTGAACTGATGCAATTTTTTTATTCATAGGAATTTTATAAGTACTCTTTCTTGTATATGTATGATTATTTAAATTATCAAAGAACAGTAACATGAAAAACTATTTGGTTATCCGACCTTGTTAGATAATGTTTACAAACCATGCTGCCCTAAACCATAATGACGATAATCTAGATGTTATAACCGTGCTCTCTTGGACAGTCTGGGTCTTATCAGACATTCACCAGGTGGATTTAGATCCATCTTTTGCTAACTTTTGGCATTTATTTACGCTCATTAGATTGATAACTCTATGTCATTTGTTCATGACATGTCGATCCTCTAATAATTTTTTTTATTTGATAATATCTGTCAACTGTTGTGCGTGTTTGTGTGAACAGTTCCCTTTAAAGATTCAGTAACGTGCTCTATCTCACAATACTCTGCTTCTTTGTCTATGCAGTGCGCCACTATGAGATTGTTTACTTGATTCATGAGAAACATGCAGAAGAGGTTGTTGCTGTTAATGAGAAAGTTCAAGGTAACCTTTCAAAGATTGCAATTAACCTTACATTTTTTTCGAATCTATTTATATTCTCGTGATGCCAAATAGAATGAGTTCATTAGATTGCCATTTCCATCTGGCATTCATGTCACTATTGTTAAATATAGGCTATAGTGTTATGCCGTAGTGGAATTGGACCAAATCATTATTGTTCTGTATTACACTATTTAGTACAAAATGTTGTCAAATGGCAGCAATTACGTCACTTTAGCATTGTTGCGTACCGCAATTTGGCAATACAGTTGACGAAAAAAGCTGCTATTTGAACTTAAGTTCTTTAATAATCACCTTTGTTGTGGATACAATTATTTGACATGCTAGTCGATTCTAAAAAGTTTCTGCAATGTGCATATTAAGTATTTAACCAAAAAAATCATTTTAACTTGATTCTATCTTGTAAATAAAACATACTTCTGATTATTCTGGTTCTTTTTTTATAATTTTTGTTCAAAACATTTGCAGACTTTTTGAGGGAGAAGAAAGGAAGAGTATGGAGATTCAGTGATTGGGGTATGAGAAAGTTGGCTTACAAAATACAGAAAGCTAATAACGCACACTACATTTTGATGAACTTCGAGATGGACGCGAAATATATCAACGAGTTCAAGACTTTGTTGGACAAAGATGAAAGAGTTATTCGACACCTAGTGATAAAGAGGGACGAAGCAATCACTGAAGATTGCCCTCCTCCTCCCGAGTTTAATACTTTTGTTGCTAGCACAGATGATGAAGAAGAATTTGATGATGAATGGGATGAATATGATGAAGATGAGGAAGATGGATCTGATTATGATGATATTGAGGGCGGTGAAGGAATTTTTATCGTAGACGACGATGATTTGGAAATATCAGAGGGCCAGAAAATAGCATAA
Protein sequence

>MS.gene55953.t1

MEALFKGSSYLLPSKPPKTTAMLASNPLRFNFPNHYLSSSSSFSRQFSLQNNPRKSFSLIMNARKKDKKEDTHSFVPKSDESTGFFPESVLLKKKTVEEDGKILPEFEDDDERKLYESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWRFSDWGMRKLAYKIQKANNAHYILMNFEMDAKYINEFKTLLDKDERVIRHLVIKRDEAITEDCPPPPEFNTFVASTDDEEEFDDEWDEYDEDEEDGSDYDDIEGGEGIFIVDDDDLEISEGQKIA