Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56079.t1 | KEH30842.1 | 98 | 250 | 5 | 0 | 1 | 250 | 17 | 266 | 2.60E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56079.t1 | Q9ZVF6 | 75.2 | 250 | 61 | 1 | 1 | 250 | 20 | 268 | 4.0e-112 | 405.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56079.t1 | A0A072UM45 | 98.0 | 250 | 5 | 0 | 1 | 250 | 17 | 266 | 1.9e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene56079 | 0.813388 | 2.63E-51 | -1.69E-46 |
| MS.gene056530 | MS.gene56079 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene56079 | 0.810724 | 1.00E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene56079 | 0.987846 | 9.34E-172 | -1.69E-46 |
| MS.gene059514 | MS.gene56079 | 0.90508 | 6.26E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGCCACCATATTAAA+TGG | 0.254138 | 4.4:-28297009 | MS.gene56079:CDS |
| TCTTCTTCTGAGAAGGCTTC+AGG | 0.276208 | 4.4:-28298122 | MS.gene56079:CDS |
| GCAGTCCATGTATATATTTA+AGG | 0.276974 | 4.4:-28298060 | MS.gene56079:intron |
| CCAAAGGCAACCATTTAATA+TGG | 0.291161 | 4.4:+28296999 | None:intergenic |
| GGTTGCCTTTGGGCAATTCC+TGG | 0.303363 | 4.4:-28296988 | MS.gene56079:CDS |
| CCATATTAAATGGTTGCCTT+TGG | 0.320118 | 4.4:-28296999 | MS.gene56079:CDS |
| GCAAATGGGCAGCAGAAAAT+TGG | 0.320664 | 4.4:-28296524 | None:intergenic |
| TACATGGACTGCATGATTAC+TGG | 0.333257 | 4.4:+28298071 | None:intergenic |
| TGAAGTTAAAGCCGGGTCTT+TGG | 0.346038 | 4.4:-28296753 | MS.gene56079:CDS |
| CATATTAAATGGTTGCCTTT+GGG | 0.356536 | 4.4:-28296998 | MS.gene56079:CDS |
| TTATTGTTAGAGAAAGCATT+TGG | 0.358097 | 4.4:-28298717 | MS.gene56079:intron |
| TCAGGTTTGATGAGCTCCTT+AGG | 0.378116 | 4.4:-28298104 | MS.gene56079:CDS |
| AAAGATTTCCTTCTTCTTTG+AGG | 0.389116 | 4.4:-28298830 | MS.gene56079:CDS |
| TATTGTTAGAGAAAGCATTT+GGG | 0.389370 | 4.4:-28298716 | MS.gene56079:intron |
| TTATTGAGGGAAAGTTCCTT+TGG | 0.396538 | 4.4:+28298672 | None:intergenic |
| CACAGCCCTGTGCATGTTTG+TGG | 0.396548 | 4.4:+28297042 | None:intergenic |
| ATTGACAGCAACCTGGCATC+GGG | 0.398754 | 4.4:-28297110 | MS.gene56079:intron |
| GAGAAAGCATTTGGGGATGA+TGG | 0.415329 | 4.4:-28298708 | MS.gene56079:CDS |
| GACCCGGCTTTAACTTCAAT+AGG | 0.423086 | 4.4:+28296758 | None:intergenic |
| AAGATTTCCTTCTTCTTTGA+GGG | 0.437800 | 4.4:-28298829 | MS.gene56079:intron |
| CCCTGTGCATGTTTGTGGTT+CGG | 0.455033 | 4.4:+28297047 | None:intergenic |
| TAGATACTGTTGGCTGCAAA+TGG | 0.458033 | 4.4:-28296539 | MS.gene56079:CDS |
| TATAAATAAACGAGTTATCC+TGG | 0.469410 | 4.4:+28297070 | None:intergenic |
| GGGTCTTTGGTTGTCATCCA+TGG | 0.470343 | 4.4:-28296740 | MS.gene56079:CDS |
| ATGAATACCCTCAAAGAAGA+AGG | 0.472672 | 4.4:+28298822 | None:intergenic |
| GAACTTTCCCTCAATAAAGT+TGG | 0.479271 | 4.4:-28298666 | MS.gene56079:CDS |
| TACCATGGCCAACTTTATTG+AGG | 0.480797 | 4.4:+28298658 | None:intergenic |
| GAAGAAAACTTCTTGAATGC+AGG | 0.483645 | 4.4:+28298140 | None:intergenic |
| ACCATGGCCAACTTTATTGA+GGG | 0.484932 | 4.4:+28298659 | None:intergenic |
| AAAATAGAGGCGGTGGAAGA+AGG | 0.486490 | 4.4:+28299000 | None:intergenic |
| TATTGACAGCAACCTGGCAT+CGG | 0.490867 | 4.4:-28297111 | MS.gene56079:intron |
| GTTCCTATTGAAGTTAAAGC+CGG | 0.491121 | 4.4:-28296761 | MS.gene56079:CDS |
| ACCGAACCACAAACATGCAC+AGG | 0.509362 | 4.4:-28297048 | MS.gene56079:CDS |
| TACTGGTCTCTTGTAACCTA+AGG | 0.518263 | 4.4:+28298088 | None:intergenic |
| GGTGGAGAAAATAGAGGCGG+TGG | 0.519274 | 4.4:+28298993 | None:intergenic |
| AACATGCACAGGGCTGTGGC+TGG | 0.521401 | 4.4:-28297037 | MS.gene56079:CDS |
| ATGTACCTTAAATATATACA+TGG | 0.552780 | 4.4:+28298055 | None:intergenic |
| GATAAAGAGGATGGAGCAGT+TGG | 0.552962 | 4.4:-28299037 | MS.gene56079:CDS |
| AAATTGATAGCATGATAAAG+AGG | 0.555437 | 4.4:-28299050 | MS.gene56079:CDS |
| CACAAACATGCACAGGGCTG+TGG | 0.556191 | 4.4:-28297041 | MS.gene56079:CDS |
| TCCCTCAATAAAGTTGGCCA+TGG | 0.556630 | 4.4:-28298660 | MS.gene56079:intron |
| TGATAGCATGATAAAGAGGA+TGG | 0.560483 | 4.4:-28299046 | MS.gene56079:CDS |
| GGGTGAAGTAGTGCCTCACC+AGG | 0.563698 | 4.4:-28297088 | MS.gene56079:CDS |
| TTCCTATTGAAGTTAAAGCC+GGG | 0.573559 | 4.4:-28296760 | MS.gene56079:CDS |
| TGACAGCAACCTGGCATCGG+GGG | 0.589195 | 4.4:-28297108 | MS.gene56079:intron |
| AGATTCTTCAGAGATGAAGA+TGG | 0.593662 | 4.4:-28296830 | MS.gene56079:CDS |
| ATGGCAATCTTATCCACCAA+AGG | 0.607737 | 4.4:-28296721 | MS.gene56079:intron |
| AAGATGGTGTCAAATTTGAT+CGG | 0.610693 | 4.4:-28296814 | MS.gene56079:CDS |
| AGATACTGTTGGCTGCAAAT+GGG | 0.618414 | 4.4:-28296538 | MS.gene56079:CDS |
| AAGGCAACCATTTAATATGG+TGG | 0.618923 | 4.4:+28297002 | None:intergenic |
| TTGCACGTGGTAGATACTGT+TGG | 0.622851 | 4.4:-28296549 | MS.gene56079:CDS |
| TTTGGTGGATAAGATTGCCA+TGG | 0.624104 | 4.4:+28296723 | None:intergenic |
| CCGAACCACAAACATGCACA+GGG | 0.624383 | 4.4:-28297047 | MS.gene56079:CDS |
| ATGGATGACAACCAAAGACC+CGG | 0.637824 | 4.4:+28296742 | None:intergenic |
| TGGTAACTTAAAGCAGCCAA+AGG | 0.650430 | 4.4:-28298688 | MS.gene56079:CDS |
| ATTGTTAGAGAAAGCATTTG+GGG | 0.650933 | 4.4:-28298715 | MS.gene56079:intron |
| TTGACAGCAACCTGGCATCG+GGG | 0.657122 | 4.4:-28297109 | MS.gene56079:intron |
| TTTGGTGGAGAAAATAGAGG+CGG | 0.659579 | 4.4:+28298990 | None:intergenic |
| ATAAACGAGTTATCCTGGTG+AGG | 0.674544 | 4.4:+28297075 | None:intergenic |
| GAGATCCAGGAATTGCCCAA+AGG | 0.691404 | 4.4:+28296983 | None:intergenic |
| ACATGCATACAGCTTGCACG+TGG | 0.710583 | 4.4:-28296562 | MS.gene56079:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTCATATAAAAAAAAT+GGG | + | chr4.4:28298124-28298143 | None:intergenic | 10.0% |
| !! | TTATCTTCATATAAAAAAAA+TGG | + | chr4.4:28298125-28298144 | None:intergenic | 10.0% |
| !! | AAACTTAAATAATGAAAAGT+AGG | + | chr4.4:28296687-28296706 | None:intergenic | 15.0% |
| !! | ATATTATGTGTATTTGAATT+AGG | - | chr4.4:28296990-28297009 | MS.gene56079:CDS | 15.0% |
| !! | TCAAATACACATAATATTAA+AGG | + | chr4.4:28296987-28297006 | None:intergenic | 15.0% |
| !!! | GATATAATCTAGAAATATTT+TGG | - | chr4.4:28298054-28298073 | MS.gene56079:intron | 15.0% |
| !!! | TCAATAAAAATTTTGTAATC+TGG | + | chr4.4:28298486-28298505 | None:intergenic | 15.0% |
| !!! | TCATAAAAATTCAATCTTTT+TGG | - | chr4.4:28296808-28296827 | MS.gene56079:CDS | 15.0% |
| !! | ATGTACCTTAAATATATACA+TGG | + | chr4.4:28297559-28297578 | None:intergenic | 20.0% |
| !!! | AAATCTTTTTGATCATAAGA+TGG | + | chr4.4:28298829-28298848 | None:intergenic | 20.0% |
| !!! | AAGTTAAGAATGAATTTTGA+AGG | + | chr4.4:28298981-28299000 | None:intergenic | 20.0% |
| !!! | AATCTAGAAATATTTTGGAT+TGG | - | chr4.4:28298059-28298078 | MS.gene56079:intron | 20.0% |
| !!! | CTATTTTTCTTAGTTTGTAT+TGG | - | chr4.4:28297313-28297332 | MS.gene56079:intron | 20.0% |
| !!! | TTATCTTCTGTTTTATTGTA+TGG | - | chr4.4:28298735-28298754 | MS.gene56079:intron | 20.0% |
| ! | AAAGATATATATCACAGACA+TGG | - | chr4.4:28298374-28298393 | MS.gene56079:intron | 25.0% |
| ! | AAAGTTTCCATGTATTAAAC+CGG | + | chr4.4:28297881-28297900 | None:intergenic | 25.0% |
| ! | AAGTAATTAAGTAACTAACC+TGG | + | chr4.4:28296649-28296668 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGGAGATAAA+GGG | + | chr4.4:28296677-28296696 | None:intergenic | 25.0% |
| ! | AGTTATTGTAACCATGAATT+CGG | + | chr4.4:28297609-28297628 | None:intergenic | 25.0% |
| ! | CTTCATATAAAAAAAATGGG+CGG | + | chr4.4:28298121-28298140 | None:intergenic | 25.0% |
| ! | TAAAGTAAGGATACATTATC+AGG | + | chr4.4:28298935-28298954 | None:intergenic | 25.0% |
| ! | TAATGAAAAGTAGGAGATAA+AGG | + | chr4.4:28296678-28296697 | None:intergenic | 25.0% |
| ! | TATAAATAAACGAGTTATCC+TGG | + | chr4.4:28298544-28298563 | None:intergenic | 25.0% |
| !! | AAATTGATAGCATGATAAAG+AGG | - | chr4.4:28296561-28296580 | MS.gene56079:CDS | 25.0% |
| !! | GTTTAATACATGGAAACTTT+TGG | - | chr4.4:28297881-28297900 | MS.gene56079:intron | 25.0% |
| !! | TTGAATCTAACTTTTCCTTT+TGG | - | chr4.4:28297400-28297419 | MS.gene56079:intron | 25.0% |
| !!! | ACTTAATTTGTTCTCTGATT+GGG | - | chr4.4:28297752-28297771 | MS.gene56079:intron | 25.0% |
| !!! | CAATGTTGTTTTTGTTTTTC+TGG | - | chr4.4:28297686-28297705 | MS.gene56079:intron | 25.0% |
| !!! | CTTTTAAAATTGCCATATGA+TGG | - | chr4.4:28298416-28298435 | MS.gene56079:intron | 25.0% |
| !!! | GAATTATTTTAGCAAACCTT+TGG | + | chr4.4:28298909-28298928 | None:intergenic | 25.0% |
| !!! | TACTTAATTTGTTCTCTGAT+TGG | - | chr4.4:28297751-28297770 | MS.gene56079:intron | 25.0% |
| !!! | TAGTTTGTATTGGTTTGTTT+GGG | - | chr4.4:28297323-28297342 | MS.gene56079:intron | 25.0% |
| !!! | TATTGAATCGTTTTCTAGTA+AGG | - | chr4.4:28296535-28296554 | MS.gene56079:CDS | 25.0% |
| !!! | TATTGTTAGAGAAAGCATTT+GGG | - | chr4.4:28296895-28296914 | MS.gene56079:intron | 25.0% |
| !!! | TCTTTAATTTGCAATCAAAC+TGG | - | chr4.4:28297817-28297836 | MS.gene56079:intron | 25.0% |
| !!! | TTAGTTTGTATTGGTTTGTT+TGG | - | chr4.4:28297322-28297341 | MS.gene56079:intron | 25.0% |
| !!! | TTATTGTTAGAGAAAGCATT+TGG | - | chr4.4:28296894-28296913 | MS.gene56079:intron | 25.0% |
| AAAGATTTCCTTCTTCTTTG+AGG | - | chr4.4:28296781-28296800 | MS.gene56079:CDS | 30.0% | |
| AAGATTTCCTTCTTCTTTGA+GGG | - | chr4.4:28296782-28296801 | MS.gene56079:CDS | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | - | chr4.4:28297157-28297176 | MS.gene56079:intron | 30.0% | |
| ACACATAATATTAAAGGCAG+AGG | + | chr4.4:28296981-28297000 | None:intergenic | 30.0% | |
| CATATTAAATGGTTGCCTTT+GGG | - | chr4.4:28298613-28298632 | MS.gene56079:intron | 30.0% | |
| CATTGATGCATGATTGTAAA+AGG | + | chr4.4:28298170-28298189 | None:intergenic | 30.0% | |
| GCAGTCCATGTATATATTTA+AGG | - | chr4.4:28297551-28297570 | MS.gene56079:intron | 30.0% | |
| GTTTGGATTGACTAATTTGA+GGG | + | chr4.4:28297249-28297268 | None:intergenic | 30.0% | |
| TAACAACATATATGCCACTA+AGG | + | chr4.4:28297941-28297960 | None:intergenic | 30.0% | |
| TACTAAGATACTCCATCATA+TGG | + | chr4.4:28298431-28298450 | None:intergenic | 30.0% | |
| TACTTTATAGCATAGAAGGA+AGG | - | chr4.4:28298948-28298967 | MS.gene56079:intron | 30.0% | |
| TCCTTACTTTATAGCATAGA+AGG | - | chr4.4:28298944-28298963 | MS.gene56079:intron | 30.0% | |
| TCCTTCTATGCTATAAAGTA+AGG | + | chr4.4:28298948-28298967 | None:intergenic | 30.0% | |
| TGTTTGGATTGACTAATTTG+AGG | + | chr4.4:28297250-28297269 | None:intergenic | 30.0% | |
| ! | AACTAGTCTGTATAATCTGA+TGG | - | chr4.4:28298024-28298043 | MS.gene56079:intron | 30.0% |
| ! | AAGATGGTGTCAAATTTGAT+CGG | - | chr4.4:28298797-28298816 | MS.gene56079:intron | 30.0% |
| ! | AATCTAACTTTTCCTTTTGG+TGG | - | chr4.4:28297403-28297422 | MS.gene56079:intron | 30.0% |
| ! | AATTTTTATTGACAGCAACC+TGG | - | chr4.4:28298494-28298513 | MS.gene56079:intron | 30.0% |
| ! | CGTTTTCCTAAACAAACTAA+GGG | + | chr4.4:28297274-28297293 | None:intergenic | 30.0% |
| ! | CTGTATACTTTTCTGATTGA+TGG | - | chr4.4:28298280-28298299 | MS.gene56079:intron | 30.0% |
| ! | GTAACGTTTTTCTTTCTTTC+TGG | - | chr4.4:28298657-28298676 | MS.gene56079:intron | 30.0% |
| ! | GTTATTTCAACATTGCAGTT+TGG | - | chr4.4:28298081-28298100 | MS.gene56079:CDS | 30.0% |
| ! | TATTTGAATTAGGCTCTGAT+TGG | - | chr4.4:28297000-28297019 | MS.gene56079:CDS | 30.0% |
| ! | TTTTGATCATAAGATGGTGA+TGG | + | chr4.4:28298823-28298842 | None:intergenic | 30.0% |
| !! | AATTAAAGAAGTATCCACAC+AGG | + | chr4.4:28297806-28297825 | None:intergenic | 30.0% |
| !! | ATTGTTAGAGAAAGCATTTG+GGG | - | chr4.4:28296896-28296915 | MS.gene56079:intron | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | - | chr4.4:28297146-28297165 | MS.gene56079:intron | 30.0% |
| !! | TAAGTAACTAACCTGGTTTT+TGG | + | chr4.4:28296642-28296661 | None:intergenic | 30.0% |
| !! | TATTATGCCGGTTTAATACA+TGG | - | chr4.4:28297871-28297890 | MS.gene56079:intron | 30.0% |
| !! | TATTGGTTTGTTTGGGATTT+GGG | - | chr4.4:28297330-28297349 | MS.gene56079:intron | 30.0% |
| !! | TTTCTGGTTTATTTGTTACC+TGG | - | chr4.4:28298673-28298692 | MS.gene56079:CDS | 30.0% |
| !!! | GTTGTTTTTGTTTTTCTGGA+GGG | - | chr4.4:28297690-28297709 | MS.gene56079:intron | 30.0% |
| !!! | TCTTAACTTTTTTTCCTGTG+TGG | - | chr4.4:28298992-28299011 | MS.gene56079:CDS | 30.0% |
| !!! | TGTTGTTTTTGTTTTTCTGG+AGG | - | chr4.4:28297689-28297708 | MS.gene56079:intron | 30.0% |
| !!! | TTATTTTAGCAAACCTTTGG+TGG | + | chr4.4:28298906-28298925 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTTTTTCTGGAG+GGG | - | chr4.4:28297691-28297710 | MS.gene56079:intron | 30.0% |
| AAGGCAACCATTTAATATGG+TGG | + | chr4.4:28298612-28298631 | None:intergenic | 35.0% | |
| AGATTCTTCAGAGATGAAGA+TGG | - | chr4.4:28298781-28298800 | MS.gene56079:intron | 35.0% | |
| AGTCGAAGTTCAAATAATCC+AGG | + | chr4.4:28298694-28298713 | None:intergenic | 35.0% | |
| ATGAATACCCTCAAAGAAGA+AGG | + | chr4.4:28296792-28296811 | None:intergenic | 35.0% | |
| ATTGTATGGTTGTTGCAGAT+GGG | - | chr4.4:28298749-28298768 | MS.gene56079:intron | 35.0% | |
| CAAAGCAACTTTCATTAAGC+TGG | + | chr4.4:28298004-28298023 | None:intergenic | 35.0% | |
| CCAAAGGCAACCATTTAATA+TGG | + | chr4.4:28298615-28298634 | None:intergenic | 35.0% | |
| CCATATTAAATGGTTGCCTT+TGG | - | chr4.4:28298612-28298631 | MS.gene56079:intron | 35.0% | |
| GAACTTTCCCTCAATAAAGT+TGG | - | chr4.4:28296945-28296964 | MS.gene56079:intron | 35.0% | |
| GAAGAAAACTTCTTGAATGC+AGG | + | chr4.4:28297474-28297493 | None:intergenic | 35.0% | |
| GAAGATGCCACCATATTAAA+TGG | - | chr4.4:28298602-28298621 | MS.gene56079:intron | 35.0% | |
| GTATACAGCAATACTAGCTA+CGG | + | chr4.4:28298268-28298287 | None:intergenic | 35.0% | |
| GTTCCTATTGAAGTTAAAGC+CGG | - | chr4.4:28298850-28298869 | MS.gene56079:CDS | 35.0% | |
| TAAACAAACTAAGGGCTGTT+TGG | + | chr4.4:28297266-28297285 | None:intergenic | 35.0% | |
| TACATGTCCATAAACTTTCC+AGG | + | chr4.4:28297167-28297186 | None:intergenic | 35.0% | |
| TATTGCATTCCAGTCAAAAC+AGG | + | chr4.4:28298218-28298237 | None:intergenic | 35.0% | |
| TATTGTATGGTTGTTGCAGA+TGG | - | chr4.4:28298748-28298767 | MS.gene56079:intron | 35.0% | |
| TGATAGCATGATAAAGAGGA+TGG | - | chr4.4:28296565-28296584 | MS.gene56079:CDS | 35.0% | |
| TTATTGAGGGAAAGTTCCTT+TGG | + | chr4.4:28296942-28296961 | None:intergenic | 35.0% | |
| TTCCTATTGAAGTTAAAGCC+GGG | - | chr4.4:28298851-28298870 | MS.gene56079:CDS | 35.0% | |
| ! | GCGTTTTCCTAAACAAACTA+AGG | + | chr4.4:28297275-28297294 | None:intergenic | 35.0% |
| ! | GGAAAACTGTGTTATTATGC+CGG | - | chr4.4:28297859-28297878 | MS.gene56079:intron | 35.0% |
| ! | GTTTTCAGTTTCCGAATTCA+TGG | - | chr4.4:28297595-28297614 | MS.gene56079:intron | 35.0% |
| ! | TATTTTCTCCACCAAAAACC+AGG | - | chr4.4:28296628-28296647 | MS.gene56079:intron | 35.0% |
| ! | TCTGGTTATGATAATGATCG+CGG | + | chr4.4:28298468-28298487 | None:intergenic | 35.0% |
| !! | AAACAGCCCTTAGTTTGTTT+AGG | - | chr4.4:28297265-28297284 | MS.gene56079:intron | 35.0% |
| !! | GAAGTTTTCTTCTTCTGAGA+AGG | - | chr4.4:28297482-28297501 | MS.gene56079:intron | 35.0% |
| !! | GTATTGGTTTGTTTGGGATT+TGG | - | chr4.4:28297329-28297348 | MS.gene56079:intron | 35.0% |
| !!! | AACTTTTTTTCCTGTGTGGA+TGG | - | chr4.4:28298996-28299015 | MS.gene56079:CDS | 35.0% |
| !!! | GTTTTTGGTGGAGAAAATAG+AGG | + | chr4.4:28296627-28296646 | None:intergenic | 35.0% |
| ACCATGGCCAACTTTATTGA+GGG | + | chr4.4:28296955-28296974 | None:intergenic | 40.0% | |
| ATAAACGAGTTATCCTGGTG+AGG | + | chr4.4:28298539-28298558 | None:intergenic | 40.0% | |
| ATGGCAATCTTATCCACCAA+AGG | - | chr4.4:28298890-28298909 | MS.gene56079:intron | 40.0% | |
| TACCATGGCCAACTTTATTG+AGG | + | chr4.4:28296956-28296975 | None:intergenic | 40.0% | |
| TGGTAACTTAAAGCAGCCAA+AGG | - | chr4.4:28296923-28296942 | MS.gene56079:intron | 40.0% | |
| TTTGGTGGAGAAAATAGAGG+CGG | + | chr4.4:28296624-28296643 | None:intergenic | 40.0% | |
| ! | AGATACTGTTGGCTGCAAAT+GGG | - | chr4.4:28299073-28299092 | MS.gene56079:CDS | 40.0% |
| ! | CATGTCTCGATTTTGTAGAC+TGG | + | chr4.4:28299034-28299053 | None:intergenic | 40.0% |
| ! | TACATGGACTGCATGATTAC+TGG | + | chr4.4:28297543-28297562 | None:intergenic | 40.0% |
| ! | TACTGGTCTCTTGTAACCTA+AGG | + | chr4.4:28297526-28297545 | None:intergenic | 40.0% |
| ! | TAGATACTGTTGGCTGCAAA+TGG | - | chr4.4:28299072-28299091 | MS.gene56079:CDS | 40.0% |
| ! | TTTGGTGGATAAGATTGCCA+TGG | + | chr4.4:28298891-28298910 | None:intergenic | 40.0% |
| !! | AACTTTTCCTTTTGGTGGAC+TGG | - | chr4.4:28297408-28297427 | MS.gene56079:intron | 40.0% |
| !! | GTAACTAACCTGGTTTTTGG+TGG | + | chr4.4:28296639-28296658 | None:intergenic | 40.0% |
| !!! | ACGTTACTTTTGTGAGATCC+AGG | + | chr4.4:28298644-28298663 | None:intergenic | 40.0% |
| !!! | ACTTTTCCTTTTGGTGGACT+GGG | - | chr4.4:28297409-28297428 | MS.gene56079:intron | 40.0% |
| AAAACGCGTGCAAGATAGTG+GGG | - | chr4.4:28297288-28297307 | MS.gene56079:intron | 45.0% | |
| AAAATAGAGGCGGTGGAAGA+AGG | + | chr4.4:28296614-28296633 | None:intergenic | 45.0% | |
| AACAGTCTCACCAGTGCTTA+TGG | - | chr4.4:28297214-28297233 | MS.gene56079:intron | 45.0% | |
| ATGGATGACAACCAAAGACC+CGG | + | chr4.4:28298872-28298891 | None:intergenic | 45.0% | |
| GAAAACGCGTGCAAGATAGT+GGG | - | chr4.4:28297287-28297306 | MS.gene56079:intron | 45.0% | |
| GATAAAGAGGATGGAGCAGT+TGG | - | chr4.4:28296574-28296593 | MS.gene56079:CDS | 45.0% | |
| GCAAATGGGCAGCAGAAAAT+TGG | - | chr4.4:28299087-28299106 | MS.gene56079:CDS | 45.0% | |
| GCATTCCAGTCAAAACAGGT+TGG | + | chr4.4:28298214-28298233 | None:intergenic | 45.0% | |
| GGAGAAGGGGTTGTATGATT+TGG | - | chr4.4:28297712-28297731 | MS.gene56079:intron | 45.0% | |
| GGTGTGTGATTGAATCTGCT+TGG | - | chr4.4:28297838-28297857 | MS.gene56079:intron | 45.0% | |
| GTATCTACTGCCATAAGCAC+TGG | + | chr4.4:28297227-28297246 | None:intergenic | 45.0% | |
| TATTGACAGCAACCTGGCAT+CGG | - | chr4.4:28298500-28298519 | MS.gene56079:intron | 45.0% | |
| TCAGGTTTGATGAGCTCCTT+AGG | - | chr4.4:28297507-28297526 | MS.gene56079:intron | 45.0% | |
| TCCACACAGGTAACAGCATT+CGG | + | chr4.4:28297793-28297812 | None:intergenic | 45.0% | |
| TCCCTCAATAAAGTTGGCCA+TGG | - | chr4.4:28296951-28296970 | MS.gene56079:intron | 45.0% | |
| TGAAGTTAAAGCCGGGTCTT+TGG | - | chr4.4:28298858-28298877 | MS.gene56079:CDS | 45.0% | |
| TTAAAGGCAGAGGCTTACCA+TGG | + | chr4.4:28296971-28296990 | None:intergenic | 45.0% | |
| TTGCACGTGGTAGATACTGT+TGG | - | chr4.4:28299062-28299081 | MS.gene56079:CDS | 45.0% | |
| ! | AGACTGTTTGCGAGAGCATA+CGG | + | chr4.4:28297202-28297221 | None:intergenic | 45.0% |
| ! | GACCCGGCTTTAACTTCAAT+AGG | + | chr4.4:28298856-28298875 | None:intergenic | 45.0% |
| ! | TCTTCTTCTGAGAAGGCTTC+AGG | - | chr4.4:28297489-28297508 | MS.gene56079:intron | 45.0% |
| ! | TTCCAGTCAAAACAGGTTGG+AGG | + | chr4.4:28298211-28298230 | None:intergenic | 45.0% |
| !! | GAGAAAGCATTTGGGGATGA+TGG | - | chr4.4:28296903-28296922 | MS.gene56079:intron | 45.0% |
| !! | TGTTTTTCTGGAGGGGAGAA+GGG | - | chr4.4:28297698-28297717 | MS.gene56079:intron | 45.0% |
| !! | TTGTTTTTCTGGAGGGGAGA+AGG | - | chr4.4:28297697-28297716 | MS.gene56079:intron | 45.0% |
| ACAGGTAACAGCATTCGGGT+GGG | + | chr4.4:28297788-28297807 | None:intergenic | 50.0% | |
| ACATGCATACAGCTTGCACG+TGG | - | chr4.4:28299049-28299068 | MS.gene56079:CDS | 50.0% | |
| ACCGAACCACAAACATGCAC+AGG | - | chr4.4:28298563-28298582 | MS.gene56079:intron | 50.0% | |
| ATTGACAGCAACCTGGCATC+GGG | - | chr4.4:28298501-28298520 | MS.gene56079:intron | 50.0% | |
| CACAATCCCAGTCCACCAAA+AGG | + | chr4.4:28297418-28297437 | None:intergenic | 50.0% | |
| CCACACAGGTAACAGCATTC+GGG | + | chr4.4:28297792-28297811 | None:intergenic | 50.0% | |
| CCACTAAGGATGAACGACAC+AGG | + | chr4.4:28297927-28297946 | None:intergenic | 50.0% | |
| CCCTGTGCATGTTTGTGGTT+CGG | + | chr4.4:28298567-28298586 | None:intergenic | 50.0% | |
| CCGAACCACAAACATGCACA+GGG | - | chr4.4:28298564-28298583 | MS.gene56079:intron | 50.0% | |
| GAGATCCAGGAATTGCCCAA+AGG | + | chr4.4:28298631-28298650 | None:intergenic | 50.0% | |
| GGAAAACGCGTGCAAGATAG+TGG | - | chr4.4:28297286-28297305 | MS.gene56079:intron | 50.0% | |
| GGGTCTTTGGTTGTCATCCA+TGG | - | chr4.4:28298871-28298890 | MS.gene56079:CDS | 50.0% | |
| TTCAAAGCTGCCATCCACAC+AGG | + | chr4.4:28299009-28299028 | None:intergenic | 50.0% | |
| ! | CCTGTGTCGTTCATCCTTAG+TGG | - | chr4.4:28297924-28297943 | MS.gene56079:intron | 50.0% |
| ! | GTCAAAACAGGTTGGAGGCT+TGG | + | chr4.4:28298206-28298225 | None:intergenic | 50.0% |
| !! | GTTTTTCTGGAGGGGAGAAG+GGG | - | chr4.4:28297699-28297718 | MS.gene56079:intron | 50.0% |
| !!! | AGCCTCCAACCTGTTTTGAC+TGG | - | chr4.4:28298206-28298225 | MS.gene56079:intron | 50.0% |
| CACAAACATGCACAGGGCTG+TGG | - | chr4.4:28298570-28298589 | MS.gene56079:intron | 55.0% | |
| CACAGCCCTGTGCATGTTTG+TGG | + | chr4.4:28298572-28298591 | None:intergenic | 55.0% | |
| CACAGGTAACAGCATTCGGG+TGG | + | chr4.4:28297789-28297808 | None:intergenic | 55.0% | |
| CAGGTAACAGCATTCGGGTG+GGG | + | chr4.4:28297787-28297806 | None:intergenic | 55.0% | |
| CCCGAATGCTGTTACCTGTG+TGG | - | chr4.4:28297789-28297808 | MS.gene56079:intron | 55.0% | |
| GGTGGAGAAAATAGAGGCGG+TGG | + | chr4.4:28296621-28296640 | None:intergenic | 55.0% | |
| GGTTGCCTTTGGGCAATTCC+TGG | - | chr4.4:28298623-28298642 | MS.gene56079:intron | 55.0% | |
| TTGACAGCAACCTGGCATCG+GGG | - | chr4.4:28298502-28298521 | MS.gene56079:intron | 55.0% | |
| AACATGCACAGGGCTGTGGC+TGG | - | chr4.4:28298574-28298593 | MS.gene56079:intron | 60.0% | |
| ACTACTTCACCCCCGATGCC+AGG | + | chr4.4:28298515-28298534 | None:intergenic | 60.0% | |
| GGGTGAAGTAGTGCCTCACC+AGG | - | chr4.4:28298523-28298542 | MS.gene56079:intron | 60.0% | |
| ! | TGACAGCAACCTGGCATCGG+GGG | - | chr4.4:28298503-28298522 | MS.gene56079:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28296525 | 28299108 | 28296525 | ID=MS.gene56079 |
| chr4.4 | mRNA | 28296525 | 28299108 | 28296525 | ID=MS.gene56079.t1;Parent=MS.gene56079 |
| chr4.4 | exon | 28298984 | 28299108 | 28298984 | ID=MS.gene56079.t1.exon1;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28298984 | 28299108 | 28298984 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28298830 | 28298890 | 28298830 | ID=MS.gene56079.t1.exon2;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28298830 | 28298890 | 28298830 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28298661 | 28298729 | 28298661 | ID=MS.gene56079.t1.exon3;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28298661 | 28298729 | 28298661 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28298061 | 28298179 | 28298061 | ID=MS.gene56079.t1.exon4;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28298061 | 28298179 | 28298061 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28296977 | 28297124 | 28296977 | ID=MS.gene56079.t1.exon5;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28296977 | 28297124 | 28296977 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28296722 | 28296866 | 28296722 | ID=MS.gene56079.t1.exon6;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28296722 | 28296866 | 28296722 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| chr4.4 | exon | 28296525 | 28296611 | 28296525 | ID=MS.gene56079.t1.exon7;Parent=MS.gene56079.t1 |
| chr4.4 | CDS | 28296525 | 28296611 | 28296525 | ID=cds.MS.gene56079.t1;Parent=MS.gene56079.t1 |
| Gene Sequence |
| Protein sequence |
