AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059514


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059514.t1 MTR_4g084560 98.214 280 5 0 1 280 1 280 0.0 577
MS.gene059514.t1 MTR_4g084560 94.444 288 6 2 1 280 1 286 0.0 559
MS.gene059514.t1 MTR_4g084560 94.643 280 5 1 1 280 1 270 0.0 548
MS.gene059514.t1 MTR_4g084560 98.120 266 5 0 1 266 1 266 0.0 546
MS.gene059514.t1 MTR_4g084560 97.992 249 5 0 32 280 1 249 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059514.t1 AT2G01490 74.820 278 69 1 2 279 5 281 1.56e-157 440
MS.gene059514.t1 AT2G01490 74.820 278 69 1 2 279 5 281 1.56e-157 440

Find 68 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGCCACCATATTAAA+TGG 0.254138 4.4:-27570528 MS.gene059514:CDS
TCTTCTTCTGAGAAGGCTTC+AGG 0.276208 4.4:-27571641 MS.gene059514:CDS
GCAGTCCATGTATATATTTA+AGG 0.276974 4.4:-27571579 MS.gene059514:intron
CCAAAGGCAACCATTTAATA+TGG 0.291161 4.4:+27570518 None:intergenic
TAGTTTACATAGAGTGGTTC+TGG 0.296838 4.4:+27569329 None:intergenic
GGTTGCCTTTGGGCAATTCC+TGG 0.303363 4.4:-27570507 MS.gene059514:CDS
CCATATTAAATGGTTGCCTT+TGG 0.320118 4.4:-27570518 MS.gene059514:CDS
GCAAATGGGCAGCAGAAAAT+TGG 0.320664 4.4:-27570043 MS.gene059514:intron
TACATGGACTGCATGATTAC+TGG 0.333257 4.4:+27571590 None:intergenic
TGAAGTTAAAGCCGGGTCTT+TGG 0.346038 4.4:-27570272 MS.gene059514:CDS
CATATTAAATGGTTGCCTTT+GGG 0.356536 4.4:-27570517 MS.gene059514:CDS
TTATTGTTAGAGAAAGCATT+TGG 0.358097 4.4:-27572236 MS.gene059514:intron
TCAGGTTTGATGAGCTCCTT+AGG 0.378116 4.4:-27571623 MS.gene059514:CDS
AAAGATTTCCTTCTTCTTTG+AGG 0.389116 4.4:-27572347 MS.gene059514:CDS
TATTGTTAGAGAAAGCATTT+GGG 0.389370 4.4:-27572235 MS.gene059514:intron
TTATTGAGGGAAAGTTCCTT+TGG 0.396538 4.4:+27572191 None:intergenic
CACAGCCCTGTGCATGTTTG+TGG 0.396548 4.4:+27570561 None:intergenic
ATTGACAGCAACCTGGCATC+GGG 0.398754 4.4:-27570629 MS.gene059514:intron
GAGAAAGCATTTGGGGATGA+TGG 0.415329 4.4:-27572227 MS.gene059514:CDS
GACCCGGCTTTAACTTCAAT+AGG 0.423086 4.4:+27570277 None:intergenic
TTGGTTACCTTGAGAGTTGA+AGG 0.437086 4.4:+27572699 None:intergenic
AAGATTTCCTTCTTCTTTGA+GGG 0.437800 4.4:-27572346 MS.gene059514:intron
CCCTGTGCATGTTTGTGGTT+CGG 0.455033 4.4:+27570566 None:intergenic
TAGATACTGTTGGCTGCAAA+TGG 0.458033 4.4:-27570058 MS.gene059514:CDS
GATAGTTAGTTTACATAGAG+TGG 0.460224 4.4:+27569323 None:intergenic
TATAAATAAACGAGTTATCC+TGG 0.469410 4.4:+27570589 None:intergenic
GGGTCTTTGGTTGTCATCCA+TGG 0.470343 4.4:-27570259 MS.gene059514:CDS
ATGAATACCCTCAAAGAAGA+AGG 0.472672 4.4:+27572339 None:intergenic
GAACTTTCCCTCAATAAAGT+TGG 0.479271 4.4:-27572185 MS.gene059514:CDS
TACCATGGCCAACTTTATTG+AGG 0.480797 4.4:+27572177 None:intergenic
GAAGAAAACTTCTTGAATGC+AGG 0.483645 4.4:+27571659 None:intergenic
TTTCAGGATCAGACGGAAAG+TGG 0.483932 4.4:-27569354 MS.gene059514:intron
ACCATGGCCAACTTTATTGA+GGG 0.484932 4.4:+27572178 None:intergenic
AAAATAGAGGCGGTGGAAGA+AGG 0.486490 4.4:+27572517 None:intergenic
TTGAAGGATTCAAGCTGATC+CGG 0.488379 4.4:+27572715 None:intergenic
TATTGACAGCAACCTGGCAT+CGG 0.490867 4.4:-27570630 MS.gene059514:intron
GTTCCTATTGAAGTTAAAGC+CGG 0.491121 4.4:-27570280 MS.gene059514:CDS
ACCGAACCACAAACATGCAC+AGG 0.509362 4.4:-27570567 MS.gene059514:CDS
TACTGGTCTCTTGTAACCTA+AGG 0.518263 4.4:+27571607 None:intergenic
GGTGGAGAAAATAGAGGCGG+TGG 0.519274 4.4:+27572510 None:intergenic
AACATGCACAGGGCTGTGGC+TGG 0.521401 4.4:-27570556 MS.gene059514:CDS
CACGATGGGTTTGCTTACAC+CGG 0.549691 4.4:-27572734 None:intergenic
CTTGAATCCTTCAACTCTCA+AGG 0.549943 4.4:-27572706 MS.gene059514:intron
ATGTACCTTAAATATATACA+TGG 0.552780 4.4:+27571574 None:intergenic
GATAAAGAGGATGGAGCAGT+TGG 0.552962 4.4:-27572554 MS.gene059514:CDS
AAATTGATAGCATGATAAAG+AGG 0.555437 4.4:-27572567 MS.gene059514:CDS
CACAAACATGCACAGGGCTG+TGG 0.556191 4.4:-27570560 MS.gene059514:CDS
TCCCTCAATAAAGTTGGCCA+TGG 0.556630 4.4:-27572179 MS.gene059514:intron
TGATAGCATGATAAAGAGGA+TGG 0.560483 4.4:-27572563 MS.gene059514:CDS
GGGTGAAGTAGTGCCTCACC+AGG 0.563698 4.4:-27570607 MS.gene059514:CDS
TTCCTATTGAAGTTAAAGCC+GGG 0.573559 4.4:-27570279 MS.gene059514:CDS
TGACAGCAACCTGGCATCGG+GGG 0.589195 4.4:-27570627 MS.gene059514:intron
AGATTCTTCAGAGATGAAGA+TGG 0.593662 4.4:-27570349 MS.gene059514:CDS
ATGGCAATCTTATCCACCAA+AGG 0.607737 4.4:-27570240 MS.gene059514:intron
AAGATGGTGTCAAATTTGAT+CGG 0.610693 4.4:-27570333 MS.gene059514:CDS
AGATACTGTTGGCTGCAAAT+GGG 0.618414 4.4:-27570057 MS.gene059514:CDS
AAGGCAACCATTTAATATGG+TGG 0.618923 4.4:+27570521 None:intergenic
TTGCACGTGGTAGATACTGT+TGG 0.622851 4.4:-27570068 MS.gene059514:CDS
TTTGGTGGATAAGATTGCCA+TGG 0.624104 4.4:+27570242 None:intergenic
CCGAACCACAAACATGCACA+GGG 0.624383 4.4:-27570566 MS.gene059514:CDS
ATGGATGACAACCAAAGACC+CGG 0.637824 4.4:+27570261 None:intergenic
TGGTAACTTAAAGCAGCCAA+AGG 0.650430 4.4:-27572207 MS.gene059514:CDS
ATTGTTAGAGAAAGCATTTG+GGG 0.650933 4.4:-27572234 MS.gene059514:intron
TTGACAGCAACCTGGCATCG+GGG 0.657122 4.4:-27570628 MS.gene059514:intron
TTTGGTGGAGAAAATAGAGG+CGG 0.659579 4.4:+27572507 None:intergenic
ATAAACGAGTTATCCTGGTG+AGG 0.674544 4.4:+27570594 None:intergenic
GAGATCCAGGAATTGCCCAA+AGG 0.691404 4.4:+27570502 None:intergenic
ACATGCATACAGCTTGCACG+TGG 0.710583 4.4:-27570081 MS.gene059514:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTTCATATAAAAAAAAT+GGG + chr4.4:27571052-27571071 None:intergenic 10.0%
!! TTATCTTCATATAAAAAAAA+TGG + chr4.4:27571053-27571072 None:intergenic 10.0%
!! AAACTTAAATAATGAAAAGT+AGG + chr4.4:27569617-27569636 None:intergenic 15.0%
!! ATATTATGTGTATTTGAATT+AGG - chr4.4:27569918-27569937 MS.gene059514:intron 15.0%
!! CATTAAAGAAAATTATATGA+AGG + chr4.4:27572413-27572432 None:intergenic 15.0%
!! TCAAATACACATAATATTAA+AGG + chr4.4:27569915-27569934 None:intergenic 15.0%
!!! AGATATGTTAAAGTTTTATA+TGG - chr4.4:27572180-27572199 MS.gene059514:CDS 15.0%
!!! CTTCATATAATTTTCTTTAA+TGG - chr4.4:27572411-27572430 MS.gene059514:intron 15.0%
!!! GATATAATCTAGAAATATTT+TGG - chr4.4:27570982-27571001 MS.gene059514:intron 15.0%
!!! TCAATAAAAATTTTGTAATC+TGG + chr4.4:27571414-27571433 None:intergenic 15.0%
!!! TCATAAAAAATCAATCTTTT+TGG - chr4.4:27569738-27569757 MS.gene059514:intron 15.0%
!!! TGCATTATTTTTTAGTTTTA+TGG - chr4.4:27572436-27572455 MS.gene059514:intron 15.0%
!! ATGTACCTTAAATATATACA+TGG + chr4.4:27570487-27570506 None:intergenic 20.0%
!!! AAATCTTTTTGATCATAAGA+TGG + chr4.4:27571757-27571776 None:intergenic 20.0%
!!! AAGTTAAGAATGAATTTTGA+AGG + chr4.4:27571909-27571928 None:intergenic 20.0%
!!! AATCTAGAAATATTTTGGAT+TGG - chr4.4:27570987-27571006 MS.gene059514:intron 20.0%
!!! ATTCTATCAATTTTCATTTC+AGG - chr4.4:27572688-27572707 MS.gene059514:intron 20.0%
!!! CTATTTTTCTTAGTTTGTAT+TGG - chr4.4:27570241-27570260 MS.gene059514:CDS 20.0%
!!! TTATCTTCTGTTTTATTGTA+TGG - chr4.4:27571663-27571682 MS.gene059514:CDS 20.0%
! AAAGATATATATCACAGACA+TGG - chr4.4:27571302-27571321 MS.gene059514:intron 25.0%
! AAAGTTTCCATGTATTAAAC+CGG + chr4.4:27570809-27570828 None:intergenic 25.0%
! AAGTAATTAAGTAACTAACC+TGG + chr4.4:27569579-27569598 None:intergenic 25.0%
! AATGAAAAGTAGGAGATAAA+GGG + chr4.4:27569607-27569626 None:intergenic 25.0%
! AGTTATTGTAACCATGAATT+CGG + chr4.4:27570537-27570556 None:intergenic 25.0%
! CTTCATATAAAAAAAATGGG+CGG + chr4.4:27571049-27571068 None:intergenic 25.0%
! TAAAGTAAGGATACATTATC+AGG + chr4.4:27571863-27571882 None:intergenic 25.0%
! TAATGAAAAGTAGGAGATAA+AGG + chr4.4:27569608-27569627 None:intergenic 25.0%
! TATAAATAAACGAGTTATCC+TGG + chr4.4:27571472-27571491 None:intergenic 25.0%
! TATATGGCCATATAAAACTA+AGG - chr4.4:27572196-27572215 MS.gene059514:CDS 25.0%
!! AAATTGATAGCATGATAAAG+AGG - chr4.4:27569491-27569510 MS.gene059514:intron 25.0%
!! GTTTAATACATGGAAACTTT+TGG - chr4.4:27570809-27570828 MS.gene059514:intron 25.0%
!! TTGAATCTAACTTTTCCTTT+TGG - chr4.4:27570328-27570347 MS.gene059514:CDS 25.0%
!!! ACTTAATTTGTTCTCTGATT+GGG - chr4.4:27570680-27570699 MS.gene059514:intron 25.0%
!!! AGATTCTCCTTAGTTTTATA+TGG + chr4.4:27572206-27572225 None:intergenic 25.0%
!!! CAATGTTGTTTTTGTTTTTC+TGG - chr4.4:27570614-27570633 MS.gene059514:CDS 25.0%
!!! CTTTTAAAATTGCCATATGA+TGG - chr4.4:27571344-27571363 MS.gene059514:intron 25.0%
!!! GAATTATTTTAGCAAACCTT+TGG + chr4.4:27571837-27571856 None:intergenic 25.0%
!!! TACTTAATTTGTTCTCTGAT+TGG - chr4.4:27570679-27570698 MS.gene059514:intron 25.0%
!!! TAGTTTGTATTGGTTTGTTT+GGG - chr4.4:27570251-27570270 MS.gene059514:CDS 25.0%
!!! TATTGAATCGTTTTCTAGTA+AGG - chr4.4:27569465-27569484 MS.gene059514:intron 25.0%
!!! TATTGTTAGAGAAAGCATTT+GGG - chr4.4:27569823-27569842 MS.gene059514:intron 25.0%
!!! TCTTTAATTTGCAATCAAAC+TGG - chr4.4:27570745-27570764 MS.gene059514:intron 25.0%
!!! TTAGTTTGTATTGGTTTGTT+TGG - chr4.4:27570250-27570269 MS.gene059514:CDS 25.0%
!!! TTATTGTTAGAGAAAGCATT+TGG - chr4.4:27569822-27569841 MS.gene059514:intron 25.0%
AAAGATTTCCTTCTTCTTTG+AGG - chr4.4:27569711-27569730 MS.gene059514:intron 30.0%
AAGATTTCCTTCTTCTTTGA+GGG - chr4.4:27569712-27569731 MS.gene059514:intron 30.0%
AAGTTATCCTGGAAAGTTTA+TGG - chr4.4:27570085-27570104 MS.gene059514:CDS 30.0%
ACACATAATATTAAAGGCAG+AGG + chr4.4:27569909-27569928 None:intergenic 30.0%
ATATGATGAGAGAAGTGAAA+GGG + chr4.4:27569390-27569409 None:intergenic 30.0%
CATATTAAATGGTTGCCTTT+GGG - chr4.4:27571541-27571560 MS.gene059514:intron 30.0%
CATTGATGCATGATTGTAAA+AGG + chr4.4:27571098-27571117 None:intergenic 30.0%
GCAGTCCATGTATATATTTA+AGG - chr4.4:27570479-27570498 MS.gene059514:intron 30.0%
GTTTGGATTGACTAATTTGA+GGG + chr4.4:27570177-27570196 None:intergenic 30.0%
TAACAACATATATGCCACTA+AGG + chr4.4:27570869-27570888 None:intergenic 30.0%
TAAGGAGAATCTTGTCTTAA+GGG - chr4.4:27572214-27572233 MS.gene059514:CDS 30.0%
TACTAAGATACTCCATCATA+TGG + chr4.4:27571359-27571378 None:intergenic 30.0%
TACTTTATAGCATAGAAGGA+AGG - chr4.4:27571876-27571895 MS.gene059514:intron 30.0%
TAGTGTTCCTTAAATCATGA+TGG - chr4.4:27572479-27572498 MS.gene059514:intron 30.0%
TATATGATGAGAGAAGTGAA+AGG + chr4.4:27569391-27569410 None:intergenic 30.0%
TCCTTACTTTATAGCATAGA+AGG - chr4.4:27571872-27571891 MS.gene059514:intron 30.0%
TCCTTCTATGCTATAAAGTA+AGG + chr4.4:27571876-27571895 None:intergenic 30.0%
TGTTTGGATTGACTAATTTG+AGG + chr4.4:27570178-27570197 None:intergenic 30.0%
TTTCCAAAATAGCACTAGTT+TGG - chr4.4:27572575-27572594 MS.gene059514:CDS 30.0%
! AACTAGTCTGTATAATCTGA+TGG - chr4.4:27570952-27570971 MS.gene059514:intron 30.0%
! AAGAAGACAAGATTTTGGAT+AGG - chr4.4:27572252-27572271 MS.gene059514:intron 30.0%
! AAGATGGTGTCAAATTTGAT+CGG - chr4.4:27571725-27571744 MS.gene059514:intron 30.0%
! AATCTAACTTTTCCTTTTGG+TGG - chr4.4:27570331-27570350 MS.gene059514:CDS 30.0%
! AATTTTTATTGACAGCAACC+TGG - chr4.4:27571422-27571441 MS.gene059514:intron 30.0%
! ATTTTCATTTCAGGATCAGA+CGG - chr4.4:27572697-27572716 MS.gene059514:intron 30.0%
! CGTTTTCCTAAACAAACTAA+GGG + chr4.4:27570202-27570221 None:intergenic 30.0%
! CTGTATACTTTTCTGATTGA+TGG - chr4.4:27571208-27571227 MS.gene059514:intron 30.0%
! GTAACGTTTTTCTTTCTTTC+TGG - chr4.4:27571585-27571604 MS.gene059514:CDS 30.0%
! GTATGAAGAAGACAAGATTT+TGG - chr4.4:27572247-27572266 MS.gene059514:intron 30.0%
! GTTATTTCAACATTGCAGTT+TGG - chr4.4:27571009-27571028 MS.gene059514:intron 30.0%
! TATTTGAATTAGGCTCTGAT+TGG - chr4.4:27569928-27569947 MS.gene059514:intron 30.0%
! TTTTGATCATAAGATGGTGA+TGG + chr4.4:27571751-27571770 None:intergenic 30.0%
!! AATTAAAGAAGTATCCACAC+AGG + chr4.4:27570734-27570753 None:intergenic 30.0%
!! ATTGTTAGAGAAAGCATTTG+GGG - chr4.4:27569824-27569843 MS.gene059514:intron 30.0%
!! GTTGTTTTCATAAGTTATCC+TGG - chr4.4:27570074-27570093 MS.gene059514:CDS 30.0%
!! TAAGTAACTAACCTGGTTTT+TGG + chr4.4:27569572-27569591 None:intergenic 30.0%
!! TATTATGCCGGTTTAATACA+TGG - chr4.4:27570799-27570818 MS.gene059514:intron 30.0%
!! TATTGGTTTGTTTGGGATTT+GGG - chr4.4:27570258-27570277 MS.gene059514:CDS 30.0%
!! TTTCTGGTTTATTTGTTACC+TGG - chr4.4:27571601-27571620 MS.gene059514:CDS 30.0%
!!! GTTGTTTTTGTTTTTCTGGA+GGG - chr4.4:27570618-27570637 MS.gene059514:CDS 30.0%
!!! TATCCAAACTAGTGCTATTT+TGG + chr4.4:27572581-27572600 None:intergenic 30.0%
!!! TCTTAACTTTTTTTCCTGTG+TGG - chr4.4:27571920-27571939 MS.gene059514:intron 30.0%
!!! TGTTGTTTTTGTTTTTCTGG+AGG - chr4.4:27570617-27570636 MS.gene059514:CDS 30.0%
!!! TTATTTTAGCAAACCTTTGG+TGG + chr4.4:27571834-27571853 None:intergenic 30.0%
!!! TTGTTTTTGTTATACGAACG+AGG - chr4.4:27572512-27572531 MS.gene059514:CDS 30.0%
!!! TTGTTTTTGTTTTTCTGGAG+GGG - chr4.4:27570619-27570638 MS.gene059514:CDS 30.0%
AAGAAATTCAAGCAAGGCAT+AGG + chr4.4:27572365-27572384 None:intergenic 35.0%
AAGGAGAATCTTGTCTTAAG+GGG - chr4.4:27572215-27572234 MS.gene059514:CDS 35.0%
AAGGCAACCATTTAATATGG+TGG + chr4.4:27571540-27571559 None:intergenic 35.0%
AATCTTGTCTTAAGGGGTTA+GGG - chr4.4:27572221-27572240 MS.gene059514:CDS 35.0%
AATTGGTGAGTTTGGATCAT+AGG - chr4.4:27572032-27572051 MS.gene059514:intron 35.0%
AGATTCTTCAGAGATGAAGA+TGG - chr4.4:27571709-27571728 MS.gene059514:intron 35.0%
AGTCGAAGTTCAAATAATCC+AGG + chr4.4:27571622-27571641 None:intergenic 35.0%
ATGAAGGCAGAGAACTAAAT+TGG + chr4.4:27572397-27572416 None:intergenic 35.0%
ATGAATACCCTCAAAGAAGA+AGG + chr4.4:27569722-27569741 None:intergenic 35.0%
ATTCAATCATATGCATGCAC+AGG - chr4.4:27569433-27569452 MS.gene059514:intron 35.0%
ATTGGTGAGTTTGGATCATA+GGG - chr4.4:27572033-27572052 MS.gene059514:intron 35.0%
ATTGTATGGTTGTTGCAGAT+GGG - chr4.4:27571677-27571696 MS.gene059514:CDS 35.0%
CAAAGCAACTTTCATTAAGC+TGG + chr4.4:27570932-27570951 None:intergenic 35.0%
CCAAAGGCAACCATTTAATA+TGG + chr4.4:27571543-27571562 None:intergenic 35.0%
CCATATTAAATGGTTGCCTT+TGG - chr4.4:27571540-27571559 MS.gene059514:intron 35.0%
CTAAGGAGAATCTTGTCTTA+AGG - chr4.4:27572213-27572232 MS.gene059514:CDS 35.0%
GAACTTTCCCTCAATAAAGT+TGG - chr4.4:27569873-27569892 MS.gene059514:intron 35.0%
GAAGAAAACTTCTTGAATGC+AGG + chr4.4:27570402-27570421 None:intergenic 35.0%
GAAGATGCCACCATATTAAA+TGG - chr4.4:27571530-27571549 MS.gene059514:intron 35.0%
GTATACAGCAATACTAGCTA+CGG + chr4.4:27571196-27571215 None:intergenic 35.0%
GTATCCAAGAAATTCAAGCA+AGG + chr4.4:27572371-27572390 None:intergenic 35.0%
GTTCCTATTGAAGTTAAAGC+CGG - chr4.4:27571778-27571797 MS.gene059514:intron 35.0%
TAAACAAACTAAGGGCTGTT+TGG + chr4.4:27570194-27570213 None:intergenic 35.0%
TAAATCATGATGGCTGCAAA+AGG - chr4.4:27572489-27572508 MS.gene059514:intron 35.0%
TAAGGAACACTATGAACTGA+TGG + chr4.4:27572471-27572490 None:intergenic 35.0%
TACATGTCCATAAACTTTCC+AGG + chr4.4:27570095-27570114 None:intergenic 35.0%
TAGTTTACATAGAGTGGTTC+TGG + chr4.4:27572732-27572751 None:intergenic 35.0%
TATGCCTTGCTTGAATTTCT+TGG - chr4.4:27572364-27572383 MS.gene059514:CDS 35.0%
TATTGCATTCCAGTCAAAAC+AGG + chr4.4:27571146-27571165 None:intergenic 35.0%
TATTGTATGGTTGTTGCAGA+TGG - chr4.4:27571676-27571695 MS.gene059514:CDS 35.0%
TGATAGCATGATAAAGAGGA+TGG - chr4.4:27569495-27569514 MS.gene059514:intron 35.0%
TGTGCATGCATATGATTGAA+TGG + chr4.4:27569434-27569453 None:intergenic 35.0%
TTATTGAGGGAAAGTTCCTT+TGG + chr4.4:27569870-27569889 None:intergenic 35.0%
TTCCTATTGAAGTTAAAGCC+GGG - chr4.4:27571779-27571798 MS.gene059514:intron 35.0%
TTTGCAGCCATCATGATTTA+AGG + chr4.4:27572489-27572508 None:intergenic 35.0%
! GCGTTTTCCTAAACAAACTA+AGG + chr4.4:27570203-27570222 None:intergenic 35.0%
! GGAAAACTGTGTTATTATGC+CGG - chr4.4:27570787-27570806 MS.gene059514:intron 35.0%
! GTTTTCAGTTTCCGAATTCA+TGG - chr4.4:27570523-27570542 MS.gene059514:CDS 35.0%
! TATTTTCTCCACCAAAAACC+AGG - chr4.4:27569558-27569577 MS.gene059514:intron 35.0%
! TCTGGTTATGATAATGATCG+CGG + chr4.4:27571396-27571415 None:intergenic 35.0%
!! AAACAGCCCTTAGTTTGTTT+AGG - chr4.4:27570193-27570212 MS.gene059514:intron 35.0%
!! GAAGTTTTCTTCTTCTGAGA+AGG - chr4.4:27570410-27570429 MS.gene059514:intron 35.0%
!! GTATTGGTTTGTTTGGGATT+TGG - chr4.4:27570257-27570276 MS.gene059514:CDS 35.0%
!!! AACTTTTTTTCCTGTGTGGA+TGG - chr4.4:27571924-27571943 MS.gene059514:intron 35.0%
!!! GTTTTTGGTGGAGAAAATAG+AGG + chr4.4:27569557-27569576 None:intergenic 35.0%
ACCATGGCCAACTTTATTGA+GGG + chr4.4:27569883-27569902 None:intergenic 40.0%
ATAAACGAGTTATCCTGGTG+AGG + chr4.4:27571467-27571486 None:intergenic 40.0%
ATGGCAATCTTATCCACCAA+AGG - chr4.4:27571818-27571837 MS.gene059514:intron 40.0%
CAGCAGAAAATTGGTGAGTT+TGG - chr4.4:27572024-27572043 MS.gene059514:intron 40.0%
CTTGAATCCTTCAACTCTCA+AGG - chr4.4:27569352-27569371 MS.gene059514:intron 40.0%
GAATCTTGTCTTAAGGGGTT+AGG - chr4.4:27572220-27572239 MS.gene059514:CDS 40.0%
GTGTTAGCAAAAGTCAACCA+AGG + chr4.4:27572665-27572684 None:intergenic 40.0%
TACCATGGCCAACTTTATTG+AGG + chr4.4:27569884-27569903 None:intergenic 40.0%
TGGTAACTTAAAGCAGCCAA+AGG - chr4.4:27569851-27569870 MS.gene059514:intron 40.0%
TTAGCAAAAGTCAACCAAGG+AGG + chr4.4:27572662-27572681 None:intergenic 40.0%
TTGAAGGATTCAAGCTGATC+CGG + chr4.4:27569346-27569365 None:intergenic 40.0%
TTGGTTACCTTGAGAGTTGA+AGG + chr4.4:27569362-27569381 None:intergenic 40.0%
TTTGGTGGAGAAAATAGAGG+CGG + chr4.4:27569554-27569573 None:intergenic 40.0%
! AGATACTGTTGGCTGCAAAT+GGG - chr4.4:27572001-27572020 MS.gene059514:intron 40.0%
! CATGTCTCGATTTTGTAGAC+TGG + chr4.4:27571962-27571981 None:intergenic 40.0%
! TACATGGACTGCATGATTAC+TGG + chr4.4:27570471-27570490 None:intergenic 40.0%
! TACTGGTCTCTTGTAACCTA+AGG + chr4.4:27570454-27570473 None:intergenic 40.0%
! TAGATACTGTTGGCTGCAAA+TGG - chr4.4:27572000-27572019 MS.gene059514:intron 40.0%
! TTTGGTGGATAAGATTGCCA+TGG + chr4.4:27571819-27571838 None:intergenic 40.0%
!! AACTTTTCCTTTTGGTGGAC+TGG - chr4.4:27570336-27570355 MS.gene059514:CDS 40.0%
!! GTAACTAACCTGGTTTTTGG+TGG + chr4.4:27569569-27569588 None:intergenic 40.0%
!!! ACGTTACTTTTGTGAGATCC+AGG + chr4.4:27571572-27571591 None:intergenic 40.0%
!!! ACTTTTCCTTTTGGTGGACT+GGG - chr4.4:27570337-27570356 MS.gene059514:CDS 40.0%
AAAACGCGTGCAAGATAGTG+GGG - chr4.4:27570216-27570235 MS.gene059514:intron 45.0%
AAAATAGAGGCGGTGGAAGA+AGG + chr4.4:27569544-27569563 None:intergenic 45.0%
AACAGTCTCACCAGTGCTTA+TGG - chr4.4:27570142-27570161 MS.gene059514:intron 45.0%
ACCAGGTGAAGTCAACTACA+AGG + chr4.4:27572294-27572313 None:intergenic 45.0%
ATGGATGACAACCAAAGACC+CGG + chr4.4:27571800-27571819 None:intergenic 45.0%
CAATCAGTACACTACCTCCT+TGG - chr4.4:27572645-27572664 MS.gene059514:intron 45.0%
CCAGGTGAAGTCAACTACAA+GGG + chr4.4:27572293-27572312 None:intergenic 45.0%
GAAAACGCGTGCAAGATAGT+GGG - chr4.4:27570215-27570234 MS.gene059514:intron 45.0%
GATAAAGAGGATGGAGCAGT+TGG - chr4.4:27569504-27569523 MS.gene059514:intron 45.0%
GATGAGAGAAGTGAAAGGGT+TGG + chr4.4:27569386-27569405 None:intergenic 45.0%
GCAAATGGGCAGCAGAAAAT+TGG - chr4.4:27572015-27572034 MS.gene059514:intron 45.0%
GCATTCCAGTCAAAACAGGT+TGG + chr4.4:27571142-27571161 None:intergenic 45.0%
GGAGAAGGGGTTGTATGATT+TGG - chr4.4:27570640-27570659 MS.gene059514:intron 45.0%
GGTGTGTGATTGAATCTGCT+TGG - chr4.4:27570766-27570785 MS.gene059514:intron 45.0%
GTATCTACTGCCATAAGCAC+TGG + chr4.4:27570155-27570174 None:intergenic 45.0%
TATTGACAGCAACCTGGCAT+CGG - chr4.4:27571428-27571447 MS.gene059514:intron 45.0%
TCAGGTTTGATGAGCTCCTT+AGG - chr4.4:27570435-27570454 MS.gene059514:intron 45.0%
TCCACACAGGTAACAGCATT+CGG + chr4.4:27570721-27570740 None:intergenic 45.0%
TCCCTCAATAAAGTTGGCCA+TGG - chr4.4:27569879-27569898 MS.gene059514:intron 45.0%
TGAAGTTAAAGCCGGGTCTT+TGG - chr4.4:27571786-27571805 MS.gene059514:intron 45.0%
TTAAAGGCAGAGGCTTACCA+TGG + chr4.4:27569899-27569918 None:intergenic 45.0%
TTGCACGTGGTAGATACTGT+TGG - chr4.4:27571990-27572009 MS.gene059514:intron 45.0%
TTTCAGGATCAGACGGAAAG+TGG - chr4.4:27572704-27572723 MS.gene059514:intron 45.0%
! AGACTGTTTGCGAGAGCATA+CGG + chr4.4:27570130-27570149 None:intergenic 45.0%
! GACCCGGCTTTAACTTCAAT+AGG + chr4.4:27571784-27571803 None:intergenic 45.0%
! TCTTCTTCTGAGAAGGCTTC+AGG - chr4.4:27570417-27570436 MS.gene059514:intron 45.0%
! TTCCAGTCAAAACAGGTTGG+AGG + chr4.4:27571139-27571158 None:intergenic 45.0%
!! GAGAAAGCATTTGGGGATGA+TGG - chr4.4:27569831-27569850 MS.gene059514:intron 45.0%
!! GAGAAGTGAAAGGGTTGGTT+TGG + chr4.4:27569381-27569400 None:intergenic 45.0%
!! TGTTTTTCTGGAGGGGAGAA+GGG - chr4.4:27570626-27570645 MS.gene059514:intron 45.0%
!! TTGTTTTTCTGGAGGGGAGA+AGG - chr4.4:27570625-27570644 MS.gene059514:intron 45.0%
ACAGGTAACAGCATTCGGGT+GGG + chr4.4:27570716-27570735 None:intergenic 50.0%
ACATGCATACAGCTTGCACG+TGG - chr4.4:27571977-27571996 MS.gene059514:intron 50.0%
ACCGAACCACAAACATGCAC+AGG - chr4.4:27571491-27571510 MS.gene059514:intron 50.0%
AGCACAAGTCTTTCCTCACC+AGG + chr4.4:27572311-27572330 None:intergenic 50.0%
ATTGACAGCAACCTGGCATC+GGG - chr4.4:27571429-27571448 MS.gene059514:intron 50.0%
CACAATCCCAGTCCACCAAA+AGG + chr4.4:27570346-27570365 None:intergenic 50.0%
CCACACAGGTAACAGCATTC+GGG + chr4.4:27570720-27570739 None:intergenic 50.0%
CCACTAAGGATGAACGACAC+AGG + chr4.4:27570855-27570874 None:intergenic 50.0%
CCCTGTGCATGTTTGTGGTT+CGG + chr4.4:27571495-27571514 None:intergenic 50.0%
CCGAACCACAAACATGCACA+GGG - chr4.4:27571492-27571511 MS.gene059514:intron 50.0%
GAGATCCAGGAATTGCCCAA+AGG + chr4.4:27571559-27571578 None:intergenic 50.0%
GGAAAACGCGTGCAAGATAG+TGG - chr4.4:27570214-27570233 MS.gene059514:intron 50.0%
GGGTCTTTGGTTGTCATCCA+TGG - chr4.4:27571799-27571818 MS.gene059514:intron 50.0%
TTCAAAGCTGCCATCCACAC+AGG + chr4.4:27571937-27571956 None:intergenic 50.0%
! CCCTTGTAGTTGACTTCACC+TGG - chr4.4:27572290-27572309 MS.gene059514:intron 50.0%
! CCTGTGTCGTTCATCCTTAG+TGG - chr4.4:27570852-27570871 MS.gene059514:intron 50.0%
! GTAGTTGACTTCACCTGGTG+AGG - chr4.4:27572295-27572314 MS.gene059514:intron 50.0%
! GTCAAAACAGGTTGGAGGCT+TGG + chr4.4:27571134-27571153 None:intergenic 50.0%
!! GTTTTTCTGGAGGGGAGAAG+GGG - chr4.4:27570627-27570646 MS.gene059514:intron 50.0%
!!! AGCCTCCAACCTGTTTTGAC+TGG - chr4.4:27571134-27571153 MS.gene059514:intron 50.0%
CACAAACATGCACAGGGCTG+TGG - chr4.4:27571498-27571517 MS.gene059514:intron 55.0%
CACAGCCCTGTGCATGTTTG+TGG + chr4.4:27571500-27571519 None:intergenic 55.0%
CACAGGTAACAGCATTCGGG+TGG + chr4.4:27570717-27570736 None:intergenic 55.0%
CAGGTAACAGCATTCGGGTG+GGG + chr4.4:27570715-27570734 None:intergenic 55.0%
CCCGAATGCTGTTACCTGTG+TGG - chr4.4:27570717-27570736 MS.gene059514:intron 55.0%
GGTGGAGAAAATAGAGGCGG+TGG + chr4.4:27569551-27569570 None:intergenic 55.0%
GGTTGCCTTTGGGCAATTCC+TGG - chr4.4:27571551-27571570 MS.gene059514:intron 55.0%
TTGACAGCAACCTGGCATCG+GGG - chr4.4:27571430-27571449 MS.gene059514:intron 55.0%
AACATGCACAGGGCTGTGGC+TGG - chr4.4:27571502-27571521 MS.gene059514:intron 60.0%
ACTACTTCACCCCCGATGCC+AGG + chr4.4:27571443-27571462 None:intergenic 60.0%
GGGTGAAGTAGTGCCTCACC+AGG - chr4.4:27571451-27571470 MS.gene059514:intron 60.0%
! TGACAGCAACCTGGCATCGG+GGG - chr4.4:27571431-27571450 MS.gene059514:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 27569328 27572752 27569328 ID=MS.gene059514
chr4.4 mRNA 27569328 27572752 27569328 ID=MS.gene059514.t1;Parent=MS.gene059514
chr4.4 exon 27572707 27572752 27572707 ID=MS.gene059514.t1.exon1;Parent=MS.gene059514.t1
chr4.4 CDS 27572707 27572752 27572707 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27572501 27572625 27572501 ID=MS.gene059514.t1.exon2;Parent=MS.gene059514.t1
chr4.4 CDS 27572501 27572625 27572501 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27572347 27572407 27572347 ID=MS.gene059514.t1.exon3;Parent=MS.gene059514.t1
chr4.4 CDS 27572347 27572407 27572347 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27572180 27572248 27572180 ID=MS.gene059514.t1.exon4;Parent=MS.gene059514.t1
chr4.4 CDS 27572180 27572248 27572180 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27571580 27571698 27571580 ID=MS.gene059514.t1.exon5;Parent=MS.gene059514.t1
chr4.4 CDS 27571580 27571698 27571580 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27570496 27570643 27570496 ID=MS.gene059514.t1.exon6;Parent=MS.gene059514.t1
chr4.4 CDS 27570496 27570643 27570496 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27570241 27570385 27570241 ID=MS.gene059514.t1.exon7;Parent=MS.gene059514.t1
chr4.4 CDS 27570241 27570385 27570241 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27570044 27570130 27570044 ID=MS.gene059514.t1.exon8;Parent=MS.gene059514.t1
chr4.4 CDS 27570044 27570130 27570044 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
chr4.4 exon 27569328 27569370 27569328 ID=MS.gene059514.t1.exon9;Parent=MS.gene059514.t1
chr4.4 CDS 27569328 27569370 27569328 ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1
Gene Sequence

>MS.gene059514

ATGGGTTTGCTTACACCGGATCAGCTTGAATCCTTCAACTCTCAAGGTAACCAAACCAACCCTTTCACTTCTCTCATCATATAACTTCAATTCTAATTTTTAACCATTCAATCATATGCATGCACAGGTTATCTTGTTATTGAATCGTTTTCTAGTAAGGATGAAATTGATAGCATGATAAAGAGGATGGAGCAGTTGGTCGATGAATTTGATCCTTCTTCCACCGCCTCTATTTTCTCCACCAAAAACCAGGTTAGTTACTTAATTACTTCGTTACCCTTTATCTCCTACTTTTCATTATTTAAGTTTTTTCTATTTGTTCTTATTGTCTTTCTTCTTTTTCAGCAACAGTTGACTGATGATTATTTCTTCGAGAGTGCTGAAAAGATTTCCTTCTTCTTTGAGGGTATTCATAAAAAATCAATCTTTTTGGTTTTCAGTGTAATAATAATCTGAGTTTCTGTTAAGTTTAATTTATCACTTTTATGTTTTTTTTATTGTTAGAGAAAGCATTTGGGGATGATGGTAACTTAAAGCAGCCAAAGGAACTTTCCCTCAATAAAGTTGGCCATGGTAAGCCTCTGCCTTTAATATTATGTGTATTTGAATTAGGCTCTGATTGGACAAACAAATTAAATTAATTAAGCGCGCTTATAGCATTAGCGCATATCATATAAGTGTTATAGATAAGCTATTTTTATAACAAAAGATAAAATAAAGTCAAATTGTTTTAATAGAAGCTATAAGTTGTTTTCATAAGTTATCCTGGAAAGTTTATGGACATGTACATAAATTTTTTCCGTATGCTCTCGCAAACAGTCTCACCAGTGCTTATGGCAGTAGATACCCTCAAATTAGTCAATCCAAACAGCCCTTAGTTTGTTTAGGAAAACGCGTGCAAGATAGTGGGGCACTATTTTTCTTAGTTTGTATTGGTTTGTTTGGGATTTGGGAATGATGTGAGAGTAGAATTGTTCAGTGTTAGTTGATTTAGTTTTCTTTGAATCTAACTTTTCCTTTTGGTGGACTGGGATTGTGTTGTGATTTTGTGCAGCACTTCATGAGATTGAGCCTGCATTCAAGAAGTTTTCTTCTTCTGAGAAGGCTTCAGGTTTGATGAGCTCCTTAGGTTACAAGAGACCAGTAATCATGCAGTCCATGTATATATTTAAGGTACATTTTCTCTGTCTTTTGTGTTTTCAGTTTCCGAATTCATGGTTACAATAACTGATGTTTAATGTTTTATTATTGCATCGTCAGCAATAAGTATGTAAAATAGTTGAACACAATGTTGTTTTTGTTTTTCTGGAGGGGAGAAGGGGTTGTATGATTTGGATCTTAAAAAAATTTGTACTTAATTTGTTCTCTGATTGGGAAACACTTTCCCCACCCGAATGCTGTTACCTGTGTGGATACTTCTTTAATTTGCAATCAAACTGGTGTGTGATTGAATCTGCTTGGAAAACTGTGTTATTATGCCGGTTTAATACATGGAAACTTTTGGTTGTTTAAATTAGAAATAAACCTGTGTCGTTCATCCTTAGTGGCATATATGTTGTTAGATTGTCAATTACTTTTTAGTGCAGCTTTTATTTAAAGTACCAGCTTAATGAAAGTTGCTTTGAACTAGTCTGTATAATCTGATGGTCTTTTTGATATAATCTAGAAATATTTTGGATTGGTTATTTCAACATTGCAGTTTGGACTTGAAGACTCATCCGCCCATTTTTTTTATATGAAGATAACATATTAACGCTGATTGAATTTCCTTTTACAATCATGCATCAATGAGTATTTTGTGCTCCAAGCCTCCAACCTGTTTTGACTGGAATGCAATAGTTTTTCTTTTTGTTGCTGTTGTCTTGCCGTAGCTAGTATTGCTGTATACTTTTCTGATTGATGGAAGCACTTATTCTTTTTTTATTTCTATTCACACGAATTTGTTTGTTTAAAGTATTTGATGTTTTGAAATTGAAAGATATATATCACAGACATGGTAATAATTTTCATTGTTCACTTTTAAAATTGCCATATGATGGAGTATCTTAGTATATATGCATTTGATCCGCGATCATTATCATAACCAGATTACAAAATTTTTATTGACAGCAACCTGGCATCGGGGGTGAAGTAGTGCCTCACCAGGATAACTCGTTTATTTATACCGAACCACAAACATGCACAGGGCTGTGGCTGGCTTTAGAAGATGCCACCATATTAAATGGTTGCCTTTGGGCAATTCCTGGATCTCACAAAAGTAACGTTTTTCTTTCTTTCTGGTTTATTTGTTACCTGGATTATTTGAACTTCGACTCAGTTCATCAGATCTAATCATTTATCTTCTGTTTTATTGTATGGTTGTTGCAGATGGGCTTGTTAGAAGATTCTTCAGAGATGAAGATGGTGTCAAATTTGATCGGCCATCACCATCTTATGATCAAAAAGATTTTGTTCCTATTGAAGTTAAAGCCGGGTCTTTGGTTGTCATCCATGGCAATCTTATCCACCAAAGGTTTGCTAAAATAATTCTCTCCTGATAATGTATCCTTACTTTATAGCATAGAAGGAAGGAAAGTTTCCTTCAAAATTCATTCTTAACTTTTTTTCCTGTGTGGATGGCAGCTTTGAAAACCAGTCTACAAAATCGAGACATGCATACAGCTTGCACGTGGTAGATACTGTTGGCTGCAAATGGGCAGCAGAAAATTGGTGAGTTTGGATCATAGGGAGAGTTTTTTTATTAGCTCTTTTTCACGTTTAAAAGCTCAATTATATCATTGAGAAGTTTGTTTGCTATAAGATCTTTTTCACGTTTAGAAGCTCAATTATCATTGAGAAGTTTATTTGCTACAAGATATGTTAAAGTTTTATATGGCCATATAAAACTAAGGAGAATCTTGTCTTAAGGGGTTAGGGTATGTATGAAGAAGACAAGATTTTGGATAGGTTATTATGACATTTTCCCTTGTAGTTGACTTCACCTGGTGAGGAAAGACTTGTGCTGTTGTGTGAATAATACACGATATATGATTCACCTATGCCTTGCTTGAATTTCTTGGATACTGACCAATTTAGTTCTCTGCCTTCATATAATTTTCTTTAATGGCTTGCATTATTTTTTAGTTTTATGGTTATATATACCATCAGTTCATAGTGTTCCTTAAATCATGATGGCTGCAAAAGGTTGTTTTTGTTATACGAACGAGGTGAAAGTTCATATTTTTCAGCAAAAAACAATAATGATATGTTTCCAAAATAGCACTAGTTTGGATAGTATTTTTAGTGAATTCGAAATTTTGTTTCTATAATTTCAAAGACAATCAGTACACTACCTCCTTGGTTGACTTTTGCTAACACTTCATTCTATCAATTTTCATTTCAGGATCAGACGGAAAGTGGAGCCAGAACCACTCTATGTAAACTAA

Protein sequence

>MS.gene059514.t1

MGLLTPDQLESFNSQGYLVIESFSSKDEIDSMIKRMEQLVDEFDPSSTASIFSTKNQQQLTDDYFFESAEKISFFFEEKAFGDDGNLKQPKELSLNKVGHALHEIEPAFKKFSSSEKASGLMSSLGYKRPVIMQSMYIFKQPGIGGEVVPHQDNSFIYTEPQTCTGLWLALEDATILNGCLWAIPGSHKNGLVRRFFRDEDGVKFDRPSPSYDQKDFVPIEVKAGSLVVIHGNLIHQSFENQSTKSRHAYSLHVVDTVGCKWAAENWIRRKVEPEPLYVN