Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059514.t1 | XP_013456813.1 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 2.20E-158 | 568.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059514.t1 | Q9ZVF6 | 74.8 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 6.1e-125 | 448.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059514.t1 | A0A072UM45 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 1.6e-158 | 568.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056530 | MS.gene059514 | 0.802242 | 6.16E-49 | -1.69E-46 |
MS.gene05884 | MS.gene059514 | 0.848123 | 7.49E-60 | -1.69E-46 |
MS.gene059436 | MS.gene059514 | 0.912397 | 2.04E-83 | -1.69E-46 |
MS.gene059514 | MS.gene066442 | 0.808859 | 2.52E-50 | -1.69E-46 |
MS.gene059514 | MS.gene067465 | 0.805186 | 1.51E-49 | -1.69E-46 |
MS.gene059514 | MS.gene071900 | -0.816391 | 5.66E-52 | -1.69E-46 |
MS.gene059514 | MS.gene071901 | -0.809228 | 2.10E-50 | -1.69E-46 |
MS.gene059514 | MS.gene073608 | -0.813916 | 2.01E-51 | -1.69E-46 |
MS.gene059514 | MS.gene24408 | 0.814003 | 1.92E-51 | -1.69E-46 |
MS.gene059514 | MS.gene29481 | 0.802833 | 4.65E-49 | -1.69E-46 |
MS.gene059514 | MS.gene47049 | 0.813041 | 3.13E-51 | -1.69E-46 |
MS.gene059514 | MS.gene47590 | 0.817339 | 3.47E-52 | -1.69E-46 |
MS.gene059514 | MS.gene47682 | 0.814417 | 1.56E-51 | -1.69E-46 |
MS.gene059514 | MS.gene51539 | 0.819478 | 1.14E-52 | -1.69E-46 |
MS.gene059514 | MS.gene56079 | 0.90508 | 6.26E-80 | -1.69E-46 |
MS.gene059514 | MS.gene56080 | 0.98065 | 1.04E-150 | -1.69E-46 |
MS.gene059514 | MS.gene59402 | 0.802698 | 4.96E-49 | -1.69E-46 |
MS.gene059514 | MS.gene64692 | 0.802562 | 5.29E-49 | -1.69E-46 |
MS.gene059514 | MS.gene67131 | 0.814925 | 1.20E-51 | -1.69E-46 |
MS.gene059514 | MS.gene71447 | 0.842719 | 2.18E-58 | -1.69E-46 |
MS.gene059514 | MS.gene83576 | -0.803153 | 3.99E-49 | -1.69E-46 |
MS.gene059514 | MS.gene88914 | 0.815947 | 7.12E-52 | -1.69E-46 |
MS.gene059514 | MS.gene93015 | 0.807591 | 4.69E-50 | -1.69E-46 |
MS.gene059514 | MS.gene95833 | 0.84731 | 1.25E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene002583 | MS.gene059514 | PPI |
MS.gene01565 | MS.gene059514 | PPI |
MS.gene059514 | MS.gene54295 | PPI |
MS.gene059514 | MS.gene004252 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059514.t1 | MTR_4g084560 | 98.214 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 0.0 | 577 |
MS.gene059514.t1 | MTR_4g084560 | 94.444 | 288 | 6 | 2 | 1 | 280 | 1 | 286 | 0.0 | 559 |
MS.gene059514.t1 | MTR_4g084560 | 94.643 | 280 | 5 | 1 | 1 | 280 | 1 | 270 | 0.0 | 548 |
MS.gene059514.t1 | MTR_4g084560 | 98.120 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 0.0 | 546 |
MS.gene059514.t1 | MTR_4g084560 | 97.992 | 249 | 5 | 0 | 32 | 280 | 1 | 249 | 0.0 | 516 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059514.t1 | AT2G01490 | 74.820 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 1.56e-157 | 440 |
MS.gene059514.t1 | AT2G01490 | 74.820 | 278 | 69 | 1 | 2 | 279 | 5 | 281 | 1.56e-157 | 440 |
Find 68 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGATGCCACCATATTAAA+TGG | 0.254138 | 4.4:-27570528 | MS.gene059514:CDS |
TCTTCTTCTGAGAAGGCTTC+AGG | 0.276208 | 4.4:-27571641 | MS.gene059514:CDS |
GCAGTCCATGTATATATTTA+AGG | 0.276974 | 4.4:-27571579 | MS.gene059514:intron |
CCAAAGGCAACCATTTAATA+TGG | 0.291161 | 4.4:+27570518 | None:intergenic |
TAGTTTACATAGAGTGGTTC+TGG | 0.296838 | 4.4:+27569329 | None:intergenic |
GGTTGCCTTTGGGCAATTCC+TGG | 0.303363 | 4.4:-27570507 | MS.gene059514:CDS |
CCATATTAAATGGTTGCCTT+TGG | 0.320118 | 4.4:-27570518 | MS.gene059514:CDS |
GCAAATGGGCAGCAGAAAAT+TGG | 0.320664 | 4.4:-27570043 | MS.gene059514:intron |
TACATGGACTGCATGATTAC+TGG | 0.333257 | 4.4:+27571590 | None:intergenic |
TGAAGTTAAAGCCGGGTCTT+TGG | 0.346038 | 4.4:-27570272 | MS.gene059514:CDS |
CATATTAAATGGTTGCCTTT+GGG | 0.356536 | 4.4:-27570517 | MS.gene059514:CDS |
TTATTGTTAGAGAAAGCATT+TGG | 0.358097 | 4.4:-27572236 | MS.gene059514:intron |
TCAGGTTTGATGAGCTCCTT+AGG | 0.378116 | 4.4:-27571623 | MS.gene059514:CDS |
AAAGATTTCCTTCTTCTTTG+AGG | 0.389116 | 4.4:-27572347 | MS.gene059514:CDS |
TATTGTTAGAGAAAGCATTT+GGG | 0.389370 | 4.4:-27572235 | MS.gene059514:intron |
TTATTGAGGGAAAGTTCCTT+TGG | 0.396538 | 4.4:+27572191 | None:intergenic |
CACAGCCCTGTGCATGTTTG+TGG | 0.396548 | 4.4:+27570561 | None:intergenic |
ATTGACAGCAACCTGGCATC+GGG | 0.398754 | 4.4:-27570629 | MS.gene059514:intron |
GAGAAAGCATTTGGGGATGA+TGG | 0.415329 | 4.4:-27572227 | MS.gene059514:CDS |
GACCCGGCTTTAACTTCAAT+AGG | 0.423086 | 4.4:+27570277 | None:intergenic |
TTGGTTACCTTGAGAGTTGA+AGG | 0.437086 | 4.4:+27572699 | None:intergenic |
AAGATTTCCTTCTTCTTTGA+GGG | 0.437800 | 4.4:-27572346 | MS.gene059514:intron |
CCCTGTGCATGTTTGTGGTT+CGG | 0.455033 | 4.4:+27570566 | None:intergenic |
TAGATACTGTTGGCTGCAAA+TGG | 0.458033 | 4.4:-27570058 | MS.gene059514:CDS |
GATAGTTAGTTTACATAGAG+TGG | 0.460224 | 4.4:+27569323 | None:intergenic |
TATAAATAAACGAGTTATCC+TGG | 0.469410 | 4.4:+27570589 | None:intergenic |
GGGTCTTTGGTTGTCATCCA+TGG | 0.470343 | 4.4:-27570259 | MS.gene059514:CDS |
ATGAATACCCTCAAAGAAGA+AGG | 0.472672 | 4.4:+27572339 | None:intergenic |
GAACTTTCCCTCAATAAAGT+TGG | 0.479271 | 4.4:-27572185 | MS.gene059514:CDS |
TACCATGGCCAACTTTATTG+AGG | 0.480797 | 4.4:+27572177 | None:intergenic |
GAAGAAAACTTCTTGAATGC+AGG | 0.483645 | 4.4:+27571659 | None:intergenic |
TTTCAGGATCAGACGGAAAG+TGG | 0.483932 | 4.4:-27569354 | MS.gene059514:intron |
ACCATGGCCAACTTTATTGA+GGG | 0.484932 | 4.4:+27572178 | None:intergenic |
AAAATAGAGGCGGTGGAAGA+AGG | 0.486490 | 4.4:+27572517 | None:intergenic |
TTGAAGGATTCAAGCTGATC+CGG | 0.488379 | 4.4:+27572715 | None:intergenic |
TATTGACAGCAACCTGGCAT+CGG | 0.490867 | 4.4:-27570630 | MS.gene059514:intron |
GTTCCTATTGAAGTTAAAGC+CGG | 0.491121 | 4.4:-27570280 | MS.gene059514:CDS |
ACCGAACCACAAACATGCAC+AGG | 0.509362 | 4.4:-27570567 | MS.gene059514:CDS |
TACTGGTCTCTTGTAACCTA+AGG | 0.518263 | 4.4:+27571607 | None:intergenic |
GGTGGAGAAAATAGAGGCGG+TGG | 0.519274 | 4.4:+27572510 | None:intergenic |
AACATGCACAGGGCTGTGGC+TGG | 0.521401 | 4.4:-27570556 | MS.gene059514:CDS |
CACGATGGGTTTGCTTACAC+CGG | 0.549691 | 4.4:-27572734 | None:intergenic |
CTTGAATCCTTCAACTCTCA+AGG | 0.549943 | 4.4:-27572706 | MS.gene059514:intron |
ATGTACCTTAAATATATACA+TGG | 0.552780 | 4.4:+27571574 | None:intergenic |
GATAAAGAGGATGGAGCAGT+TGG | 0.552962 | 4.4:-27572554 | MS.gene059514:CDS |
AAATTGATAGCATGATAAAG+AGG | 0.555437 | 4.4:-27572567 | MS.gene059514:CDS |
CACAAACATGCACAGGGCTG+TGG | 0.556191 | 4.4:-27570560 | MS.gene059514:CDS |
TCCCTCAATAAAGTTGGCCA+TGG | 0.556630 | 4.4:-27572179 | MS.gene059514:intron |
TGATAGCATGATAAAGAGGA+TGG | 0.560483 | 4.4:-27572563 | MS.gene059514:CDS |
GGGTGAAGTAGTGCCTCACC+AGG | 0.563698 | 4.4:-27570607 | MS.gene059514:CDS |
TTCCTATTGAAGTTAAAGCC+GGG | 0.573559 | 4.4:-27570279 | MS.gene059514:CDS |
TGACAGCAACCTGGCATCGG+GGG | 0.589195 | 4.4:-27570627 | MS.gene059514:intron |
AGATTCTTCAGAGATGAAGA+TGG | 0.593662 | 4.4:-27570349 | MS.gene059514:CDS |
ATGGCAATCTTATCCACCAA+AGG | 0.607737 | 4.4:-27570240 | MS.gene059514:intron |
AAGATGGTGTCAAATTTGAT+CGG | 0.610693 | 4.4:-27570333 | MS.gene059514:CDS |
AGATACTGTTGGCTGCAAAT+GGG | 0.618414 | 4.4:-27570057 | MS.gene059514:CDS |
AAGGCAACCATTTAATATGG+TGG | 0.618923 | 4.4:+27570521 | None:intergenic |
TTGCACGTGGTAGATACTGT+TGG | 0.622851 | 4.4:-27570068 | MS.gene059514:CDS |
TTTGGTGGATAAGATTGCCA+TGG | 0.624104 | 4.4:+27570242 | None:intergenic |
CCGAACCACAAACATGCACA+GGG | 0.624383 | 4.4:-27570566 | MS.gene059514:CDS |
ATGGATGACAACCAAAGACC+CGG | 0.637824 | 4.4:+27570261 | None:intergenic |
TGGTAACTTAAAGCAGCCAA+AGG | 0.650430 | 4.4:-27572207 | MS.gene059514:CDS |
ATTGTTAGAGAAAGCATTTG+GGG | 0.650933 | 4.4:-27572234 | MS.gene059514:intron |
TTGACAGCAACCTGGCATCG+GGG | 0.657122 | 4.4:-27570628 | MS.gene059514:intron |
TTTGGTGGAGAAAATAGAGG+CGG | 0.659579 | 4.4:+27572507 | None:intergenic |
ATAAACGAGTTATCCTGGTG+AGG | 0.674544 | 4.4:+27570594 | None:intergenic |
GAGATCCAGGAATTGCCCAA+AGG | 0.691404 | 4.4:+27570502 | None:intergenic |
ACATGCATACAGCTTGCACG+TGG | 0.710583 | 4.4:-27570081 | MS.gene059514:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATCTTCATATAAAAAAAAT+GGG | + | chr4.4:27571052-27571071 | None:intergenic | 10.0% |
!! | TTATCTTCATATAAAAAAAA+TGG | + | chr4.4:27571053-27571072 | None:intergenic | 10.0% |
!! | AAACTTAAATAATGAAAAGT+AGG | + | chr4.4:27569617-27569636 | None:intergenic | 15.0% |
!! | ATATTATGTGTATTTGAATT+AGG | - | chr4.4:27569918-27569937 | MS.gene059514:intron | 15.0% |
!! | CATTAAAGAAAATTATATGA+AGG | + | chr4.4:27572413-27572432 | None:intergenic | 15.0% |
!! | TCAAATACACATAATATTAA+AGG | + | chr4.4:27569915-27569934 | None:intergenic | 15.0% |
!!! | AGATATGTTAAAGTTTTATA+TGG | - | chr4.4:27572180-27572199 | MS.gene059514:CDS | 15.0% |
!!! | CTTCATATAATTTTCTTTAA+TGG | - | chr4.4:27572411-27572430 | MS.gene059514:intron | 15.0% |
!!! | GATATAATCTAGAAATATTT+TGG | - | chr4.4:27570982-27571001 | MS.gene059514:intron | 15.0% |
!!! | TCAATAAAAATTTTGTAATC+TGG | + | chr4.4:27571414-27571433 | None:intergenic | 15.0% |
!!! | TCATAAAAAATCAATCTTTT+TGG | - | chr4.4:27569738-27569757 | MS.gene059514:intron | 15.0% |
!!! | TGCATTATTTTTTAGTTTTA+TGG | - | chr4.4:27572436-27572455 | MS.gene059514:intron | 15.0% |
!! | ATGTACCTTAAATATATACA+TGG | + | chr4.4:27570487-27570506 | None:intergenic | 20.0% |
!!! | AAATCTTTTTGATCATAAGA+TGG | + | chr4.4:27571757-27571776 | None:intergenic | 20.0% |
!!! | AAGTTAAGAATGAATTTTGA+AGG | + | chr4.4:27571909-27571928 | None:intergenic | 20.0% |
!!! | AATCTAGAAATATTTTGGAT+TGG | - | chr4.4:27570987-27571006 | MS.gene059514:intron | 20.0% |
!!! | ATTCTATCAATTTTCATTTC+AGG | - | chr4.4:27572688-27572707 | MS.gene059514:intron | 20.0% |
!!! | CTATTTTTCTTAGTTTGTAT+TGG | - | chr4.4:27570241-27570260 | MS.gene059514:CDS | 20.0% |
!!! | TTATCTTCTGTTTTATTGTA+TGG | - | chr4.4:27571663-27571682 | MS.gene059514:CDS | 20.0% |
! | AAAGATATATATCACAGACA+TGG | - | chr4.4:27571302-27571321 | MS.gene059514:intron | 25.0% |
! | AAAGTTTCCATGTATTAAAC+CGG | + | chr4.4:27570809-27570828 | None:intergenic | 25.0% |
! | AAGTAATTAAGTAACTAACC+TGG | + | chr4.4:27569579-27569598 | None:intergenic | 25.0% |
! | AATGAAAAGTAGGAGATAAA+GGG | + | chr4.4:27569607-27569626 | None:intergenic | 25.0% |
! | AGTTATTGTAACCATGAATT+CGG | + | chr4.4:27570537-27570556 | None:intergenic | 25.0% |
! | CTTCATATAAAAAAAATGGG+CGG | + | chr4.4:27571049-27571068 | None:intergenic | 25.0% |
! | TAAAGTAAGGATACATTATC+AGG | + | chr4.4:27571863-27571882 | None:intergenic | 25.0% |
! | TAATGAAAAGTAGGAGATAA+AGG | + | chr4.4:27569608-27569627 | None:intergenic | 25.0% |
! | TATAAATAAACGAGTTATCC+TGG | + | chr4.4:27571472-27571491 | None:intergenic | 25.0% |
! | TATATGGCCATATAAAACTA+AGG | - | chr4.4:27572196-27572215 | MS.gene059514:CDS | 25.0% |
!! | AAATTGATAGCATGATAAAG+AGG | - | chr4.4:27569491-27569510 | MS.gene059514:intron | 25.0% |
!! | GTTTAATACATGGAAACTTT+TGG | - | chr4.4:27570809-27570828 | MS.gene059514:intron | 25.0% |
!! | TTGAATCTAACTTTTCCTTT+TGG | - | chr4.4:27570328-27570347 | MS.gene059514:CDS | 25.0% |
!!! | ACTTAATTTGTTCTCTGATT+GGG | - | chr4.4:27570680-27570699 | MS.gene059514:intron | 25.0% |
!!! | AGATTCTCCTTAGTTTTATA+TGG | + | chr4.4:27572206-27572225 | None:intergenic | 25.0% |
!!! | CAATGTTGTTTTTGTTTTTC+TGG | - | chr4.4:27570614-27570633 | MS.gene059514:CDS | 25.0% |
!!! | CTTTTAAAATTGCCATATGA+TGG | - | chr4.4:27571344-27571363 | MS.gene059514:intron | 25.0% |
!!! | GAATTATTTTAGCAAACCTT+TGG | + | chr4.4:27571837-27571856 | None:intergenic | 25.0% |
!!! | TACTTAATTTGTTCTCTGAT+TGG | - | chr4.4:27570679-27570698 | MS.gene059514:intron | 25.0% |
!!! | TAGTTTGTATTGGTTTGTTT+GGG | - | chr4.4:27570251-27570270 | MS.gene059514:CDS | 25.0% |
!!! | TATTGAATCGTTTTCTAGTA+AGG | - | chr4.4:27569465-27569484 | MS.gene059514:intron | 25.0% |
!!! | TATTGTTAGAGAAAGCATTT+GGG | - | chr4.4:27569823-27569842 | MS.gene059514:intron | 25.0% |
!!! | TCTTTAATTTGCAATCAAAC+TGG | - | chr4.4:27570745-27570764 | MS.gene059514:intron | 25.0% |
!!! | TTAGTTTGTATTGGTTTGTT+TGG | - | chr4.4:27570250-27570269 | MS.gene059514:CDS | 25.0% |
!!! | TTATTGTTAGAGAAAGCATT+TGG | - | chr4.4:27569822-27569841 | MS.gene059514:intron | 25.0% |
AAAGATTTCCTTCTTCTTTG+AGG | - | chr4.4:27569711-27569730 | MS.gene059514:intron | 30.0% | |
AAGATTTCCTTCTTCTTTGA+GGG | - | chr4.4:27569712-27569731 | MS.gene059514:intron | 30.0% | |
AAGTTATCCTGGAAAGTTTA+TGG | - | chr4.4:27570085-27570104 | MS.gene059514:CDS | 30.0% | |
ACACATAATATTAAAGGCAG+AGG | + | chr4.4:27569909-27569928 | None:intergenic | 30.0% | |
ATATGATGAGAGAAGTGAAA+GGG | + | chr4.4:27569390-27569409 | None:intergenic | 30.0% | |
CATATTAAATGGTTGCCTTT+GGG | - | chr4.4:27571541-27571560 | MS.gene059514:intron | 30.0% | |
CATTGATGCATGATTGTAAA+AGG | + | chr4.4:27571098-27571117 | None:intergenic | 30.0% | |
GCAGTCCATGTATATATTTA+AGG | - | chr4.4:27570479-27570498 | MS.gene059514:intron | 30.0% | |
GTTTGGATTGACTAATTTGA+GGG | + | chr4.4:27570177-27570196 | None:intergenic | 30.0% | |
TAACAACATATATGCCACTA+AGG | + | chr4.4:27570869-27570888 | None:intergenic | 30.0% | |
TAAGGAGAATCTTGTCTTAA+GGG | - | chr4.4:27572214-27572233 | MS.gene059514:CDS | 30.0% | |
TACTAAGATACTCCATCATA+TGG | + | chr4.4:27571359-27571378 | None:intergenic | 30.0% | |
TACTTTATAGCATAGAAGGA+AGG | - | chr4.4:27571876-27571895 | MS.gene059514:intron | 30.0% | |
TAGTGTTCCTTAAATCATGA+TGG | - | chr4.4:27572479-27572498 | MS.gene059514:intron | 30.0% | |
TATATGATGAGAGAAGTGAA+AGG | + | chr4.4:27569391-27569410 | None:intergenic | 30.0% | |
TCCTTACTTTATAGCATAGA+AGG | - | chr4.4:27571872-27571891 | MS.gene059514:intron | 30.0% | |
TCCTTCTATGCTATAAAGTA+AGG | + | chr4.4:27571876-27571895 | None:intergenic | 30.0% | |
TGTTTGGATTGACTAATTTG+AGG | + | chr4.4:27570178-27570197 | None:intergenic | 30.0% | |
TTTCCAAAATAGCACTAGTT+TGG | - | chr4.4:27572575-27572594 | MS.gene059514:CDS | 30.0% | |
! | AACTAGTCTGTATAATCTGA+TGG | - | chr4.4:27570952-27570971 | MS.gene059514:intron | 30.0% |
! | AAGAAGACAAGATTTTGGAT+AGG | - | chr4.4:27572252-27572271 | MS.gene059514:intron | 30.0% |
! | AAGATGGTGTCAAATTTGAT+CGG | - | chr4.4:27571725-27571744 | MS.gene059514:intron | 30.0% |
! | AATCTAACTTTTCCTTTTGG+TGG | - | chr4.4:27570331-27570350 | MS.gene059514:CDS | 30.0% |
! | AATTTTTATTGACAGCAACC+TGG | - | chr4.4:27571422-27571441 | MS.gene059514:intron | 30.0% |
! | ATTTTCATTTCAGGATCAGA+CGG | - | chr4.4:27572697-27572716 | MS.gene059514:intron | 30.0% |
! | CGTTTTCCTAAACAAACTAA+GGG | + | chr4.4:27570202-27570221 | None:intergenic | 30.0% |
! | CTGTATACTTTTCTGATTGA+TGG | - | chr4.4:27571208-27571227 | MS.gene059514:intron | 30.0% |
! | GTAACGTTTTTCTTTCTTTC+TGG | - | chr4.4:27571585-27571604 | MS.gene059514:CDS | 30.0% |
! | GTATGAAGAAGACAAGATTT+TGG | - | chr4.4:27572247-27572266 | MS.gene059514:intron | 30.0% |
! | GTTATTTCAACATTGCAGTT+TGG | - | chr4.4:27571009-27571028 | MS.gene059514:intron | 30.0% |
! | TATTTGAATTAGGCTCTGAT+TGG | - | chr4.4:27569928-27569947 | MS.gene059514:intron | 30.0% |
! | TTTTGATCATAAGATGGTGA+TGG | + | chr4.4:27571751-27571770 | None:intergenic | 30.0% |
!! | AATTAAAGAAGTATCCACAC+AGG | + | chr4.4:27570734-27570753 | None:intergenic | 30.0% |
!! | ATTGTTAGAGAAAGCATTTG+GGG | - | chr4.4:27569824-27569843 | MS.gene059514:intron | 30.0% |
!! | GTTGTTTTCATAAGTTATCC+TGG | - | chr4.4:27570074-27570093 | MS.gene059514:CDS | 30.0% |
!! | TAAGTAACTAACCTGGTTTT+TGG | + | chr4.4:27569572-27569591 | None:intergenic | 30.0% |
!! | TATTATGCCGGTTTAATACA+TGG | - | chr4.4:27570799-27570818 | MS.gene059514:intron | 30.0% |
!! | TATTGGTTTGTTTGGGATTT+GGG | - | chr4.4:27570258-27570277 | MS.gene059514:CDS | 30.0% |
!! | TTTCTGGTTTATTTGTTACC+TGG | - | chr4.4:27571601-27571620 | MS.gene059514:CDS | 30.0% |
!!! | GTTGTTTTTGTTTTTCTGGA+GGG | - | chr4.4:27570618-27570637 | MS.gene059514:CDS | 30.0% |
!!! | TATCCAAACTAGTGCTATTT+TGG | + | chr4.4:27572581-27572600 | None:intergenic | 30.0% |
!!! | TCTTAACTTTTTTTCCTGTG+TGG | - | chr4.4:27571920-27571939 | MS.gene059514:intron | 30.0% |
!!! | TGTTGTTTTTGTTTTTCTGG+AGG | - | chr4.4:27570617-27570636 | MS.gene059514:CDS | 30.0% |
!!! | TTATTTTAGCAAACCTTTGG+TGG | + | chr4.4:27571834-27571853 | None:intergenic | 30.0% |
!!! | TTGTTTTTGTTATACGAACG+AGG | - | chr4.4:27572512-27572531 | MS.gene059514:CDS | 30.0% |
!!! | TTGTTTTTGTTTTTCTGGAG+GGG | - | chr4.4:27570619-27570638 | MS.gene059514:CDS | 30.0% |
AAGAAATTCAAGCAAGGCAT+AGG | + | chr4.4:27572365-27572384 | None:intergenic | 35.0% | |
AAGGAGAATCTTGTCTTAAG+GGG | - | chr4.4:27572215-27572234 | MS.gene059514:CDS | 35.0% | |
AAGGCAACCATTTAATATGG+TGG | + | chr4.4:27571540-27571559 | None:intergenic | 35.0% | |
AATCTTGTCTTAAGGGGTTA+GGG | - | chr4.4:27572221-27572240 | MS.gene059514:CDS | 35.0% | |
AATTGGTGAGTTTGGATCAT+AGG | - | chr4.4:27572032-27572051 | MS.gene059514:intron | 35.0% | |
AGATTCTTCAGAGATGAAGA+TGG | - | chr4.4:27571709-27571728 | MS.gene059514:intron | 35.0% | |
AGTCGAAGTTCAAATAATCC+AGG | + | chr4.4:27571622-27571641 | None:intergenic | 35.0% | |
ATGAAGGCAGAGAACTAAAT+TGG | + | chr4.4:27572397-27572416 | None:intergenic | 35.0% | |
ATGAATACCCTCAAAGAAGA+AGG | + | chr4.4:27569722-27569741 | None:intergenic | 35.0% | |
ATTCAATCATATGCATGCAC+AGG | - | chr4.4:27569433-27569452 | MS.gene059514:intron | 35.0% | |
ATTGGTGAGTTTGGATCATA+GGG | - | chr4.4:27572033-27572052 | MS.gene059514:intron | 35.0% | |
ATTGTATGGTTGTTGCAGAT+GGG | - | chr4.4:27571677-27571696 | MS.gene059514:CDS | 35.0% | |
CAAAGCAACTTTCATTAAGC+TGG | + | chr4.4:27570932-27570951 | None:intergenic | 35.0% | |
CCAAAGGCAACCATTTAATA+TGG | + | chr4.4:27571543-27571562 | None:intergenic | 35.0% | |
CCATATTAAATGGTTGCCTT+TGG | - | chr4.4:27571540-27571559 | MS.gene059514:intron | 35.0% | |
CTAAGGAGAATCTTGTCTTA+AGG | - | chr4.4:27572213-27572232 | MS.gene059514:CDS | 35.0% | |
GAACTTTCCCTCAATAAAGT+TGG | - | chr4.4:27569873-27569892 | MS.gene059514:intron | 35.0% | |
GAAGAAAACTTCTTGAATGC+AGG | + | chr4.4:27570402-27570421 | None:intergenic | 35.0% | |
GAAGATGCCACCATATTAAA+TGG | - | chr4.4:27571530-27571549 | MS.gene059514:intron | 35.0% | |
GTATACAGCAATACTAGCTA+CGG | + | chr4.4:27571196-27571215 | None:intergenic | 35.0% | |
GTATCCAAGAAATTCAAGCA+AGG | + | chr4.4:27572371-27572390 | None:intergenic | 35.0% | |
GTTCCTATTGAAGTTAAAGC+CGG | - | chr4.4:27571778-27571797 | MS.gene059514:intron | 35.0% | |
TAAACAAACTAAGGGCTGTT+TGG | + | chr4.4:27570194-27570213 | None:intergenic | 35.0% | |
TAAATCATGATGGCTGCAAA+AGG | - | chr4.4:27572489-27572508 | MS.gene059514:intron | 35.0% | |
TAAGGAACACTATGAACTGA+TGG | + | chr4.4:27572471-27572490 | None:intergenic | 35.0% | |
TACATGTCCATAAACTTTCC+AGG | + | chr4.4:27570095-27570114 | None:intergenic | 35.0% | |
TAGTTTACATAGAGTGGTTC+TGG | + | chr4.4:27572732-27572751 | None:intergenic | 35.0% | |
TATGCCTTGCTTGAATTTCT+TGG | - | chr4.4:27572364-27572383 | MS.gene059514:CDS | 35.0% | |
TATTGCATTCCAGTCAAAAC+AGG | + | chr4.4:27571146-27571165 | None:intergenic | 35.0% | |
TATTGTATGGTTGTTGCAGA+TGG | - | chr4.4:27571676-27571695 | MS.gene059514:CDS | 35.0% | |
TGATAGCATGATAAAGAGGA+TGG | - | chr4.4:27569495-27569514 | MS.gene059514:intron | 35.0% | |
TGTGCATGCATATGATTGAA+TGG | + | chr4.4:27569434-27569453 | None:intergenic | 35.0% | |
TTATTGAGGGAAAGTTCCTT+TGG | + | chr4.4:27569870-27569889 | None:intergenic | 35.0% | |
TTCCTATTGAAGTTAAAGCC+GGG | - | chr4.4:27571779-27571798 | MS.gene059514:intron | 35.0% | |
TTTGCAGCCATCATGATTTA+AGG | + | chr4.4:27572489-27572508 | None:intergenic | 35.0% | |
! | GCGTTTTCCTAAACAAACTA+AGG | + | chr4.4:27570203-27570222 | None:intergenic | 35.0% |
! | GGAAAACTGTGTTATTATGC+CGG | - | chr4.4:27570787-27570806 | MS.gene059514:intron | 35.0% |
! | GTTTTCAGTTTCCGAATTCA+TGG | - | chr4.4:27570523-27570542 | MS.gene059514:CDS | 35.0% |
! | TATTTTCTCCACCAAAAACC+AGG | - | chr4.4:27569558-27569577 | MS.gene059514:intron | 35.0% |
! | TCTGGTTATGATAATGATCG+CGG | + | chr4.4:27571396-27571415 | None:intergenic | 35.0% |
!! | AAACAGCCCTTAGTTTGTTT+AGG | - | chr4.4:27570193-27570212 | MS.gene059514:intron | 35.0% |
!! | GAAGTTTTCTTCTTCTGAGA+AGG | - | chr4.4:27570410-27570429 | MS.gene059514:intron | 35.0% |
!! | GTATTGGTTTGTTTGGGATT+TGG | - | chr4.4:27570257-27570276 | MS.gene059514:CDS | 35.0% |
!!! | AACTTTTTTTCCTGTGTGGA+TGG | - | chr4.4:27571924-27571943 | MS.gene059514:intron | 35.0% |
!!! | GTTTTTGGTGGAGAAAATAG+AGG | + | chr4.4:27569557-27569576 | None:intergenic | 35.0% |
ACCATGGCCAACTTTATTGA+GGG | + | chr4.4:27569883-27569902 | None:intergenic | 40.0% | |
ATAAACGAGTTATCCTGGTG+AGG | + | chr4.4:27571467-27571486 | None:intergenic | 40.0% | |
ATGGCAATCTTATCCACCAA+AGG | - | chr4.4:27571818-27571837 | MS.gene059514:intron | 40.0% | |
CAGCAGAAAATTGGTGAGTT+TGG | - | chr4.4:27572024-27572043 | MS.gene059514:intron | 40.0% | |
CTTGAATCCTTCAACTCTCA+AGG | - | chr4.4:27569352-27569371 | MS.gene059514:intron | 40.0% | |
GAATCTTGTCTTAAGGGGTT+AGG | - | chr4.4:27572220-27572239 | MS.gene059514:CDS | 40.0% | |
GTGTTAGCAAAAGTCAACCA+AGG | + | chr4.4:27572665-27572684 | None:intergenic | 40.0% | |
TACCATGGCCAACTTTATTG+AGG | + | chr4.4:27569884-27569903 | None:intergenic | 40.0% | |
TGGTAACTTAAAGCAGCCAA+AGG | - | chr4.4:27569851-27569870 | MS.gene059514:intron | 40.0% | |
TTAGCAAAAGTCAACCAAGG+AGG | + | chr4.4:27572662-27572681 | None:intergenic | 40.0% | |
TTGAAGGATTCAAGCTGATC+CGG | + | chr4.4:27569346-27569365 | None:intergenic | 40.0% | |
TTGGTTACCTTGAGAGTTGA+AGG | + | chr4.4:27569362-27569381 | None:intergenic | 40.0% | |
TTTGGTGGAGAAAATAGAGG+CGG | + | chr4.4:27569554-27569573 | None:intergenic | 40.0% | |
! | AGATACTGTTGGCTGCAAAT+GGG | - | chr4.4:27572001-27572020 | MS.gene059514:intron | 40.0% |
! | CATGTCTCGATTTTGTAGAC+TGG | + | chr4.4:27571962-27571981 | None:intergenic | 40.0% |
! | TACATGGACTGCATGATTAC+TGG | + | chr4.4:27570471-27570490 | None:intergenic | 40.0% |
! | TACTGGTCTCTTGTAACCTA+AGG | + | chr4.4:27570454-27570473 | None:intergenic | 40.0% |
! | TAGATACTGTTGGCTGCAAA+TGG | - | chr4.4:27572000-27572019 | MS.gene059514:intron | 40.0% |
! | TTTGGTGGATAAGATTGCCA+TGG | + | chr4.4:27571819-27571838 | None:intergenic | 40.0% |
!! | AACTTTTCCTTTTGGTGGAC+TGG | - | chr4.4:27570336-27570355 | MS.gene059514:CDS | 40.0% |
!! | GTAACTAACCTGGTTTTTGG+TGG | + | chr4.4:27569569-27569588 | None:intergenic | 40.0% |
!!! | ACGTTACTTTTGTGAGATCC+AGG | + | chr4.4:27571572-27571591 | None:intergenic | 40.0% |
!!! | ACTTTTCCTTTTGGTGGACT+GGG | - | chr4.4:27570337-27570356 | MS.gene059514:CDS | 40.0% |
AAAACGCGTGCAAGATAGTG+GGG | - | chr4.4:27570216-27570235 | MS.gene059514:intron | 45.0% | |
AAAATAGAGGCGGTGGAAGA+AGG | + | chr4.4:27569544-27569563 | None:intergenic | 45.0% | |
AACAGTCTCACCAGTGCTTA+TGG | - | chr4.4:27570142-27570161 | MS.gene059514:intron | 45.0% | |
ACCAGGTGAAGTCAACTACA+AGG | + | chr4.4:27572294-27572313 | None:intergenic | 45.0% | |
ATGGATGACAACCAAAGACC+CGG | + | chr4.4:27571800-27571819 | None:intergenic | 45.0% | |
CAATCAGTACACTACCTCCT+TGG | - | chr4.4:27572645-27572664 | MS.gene059514:intron | 45.0% | |
CCAGGTGAAGTCAACTACAA+GGG | + | chr4.4:27572293-27572312 | None:intergenic | 45.0% | |
GAAAACGCGTGCAAGATAGT+GGG | - | chr4.4:27570215-27570234 | MS.gene059514:intron | 45.0% | |
GATAAAGAGGATGGAGCAGT+TGG | - | chr4.4:27569504-27569523 | MS.gene059514:intron | 45.0% | |
GATGAGAGAAGTGAAAGGGT+TGG | + | chr4.4:27569386-27569405 | None:intergenic | 45.0% | |
GCAAATGGGCAGCAGAAAAT+TGG | - | chr4.4:27572015-27572034 | MS.gene059514:intron | 45.0% | |
GCATTCCAGTCAAAACAGGT+TGG | + | chr4.4:27571142-27571161 | None:intergenic | 45.0% | |
GGAGAAGGGGTTGTATGATT+TGG | - | chr4.4:27570640-27570659 | MS.gene059514:intron | 45.0% | |
GGTGTGTGATTGAATCTGCT+TGG | - | chr4.4:27570766-27570785 | MS.gene059514:intron | 45.0% | |
GTATCTACTGCCATAAGCAC+TGG | + | chr4.4:27570155-27570174 | None:intergenic | 45.0% | |
TATTGACAGCAACCTGGCAT+CGG | - | chr4.4:27571428-27571447 | MS.gene059514:intron | 45.0% | |
TCAGGTTTGATGAGCTCCTT+AGG | - | chr4.4:27570435-27570454 | MS.gene059514:intron | 45.0% | |
TCCACACAGGTAACAGCATT+CGG | + | chr4.4:27570721-27570740 | None:intergenic | 45.0% | |
TCCCTCAATAAAGTTGGCCA+TGG | - | chr4.4:27569879-27569898 | MS.gene059514:intron | 45.0% | |
TGAAGTTAAAGCCGGGTCTT+TGG | - | chr4.4:27571786-27571805 | MS.gene059514:intron | 45.0% | |
TTAAAGGCAGAGGCTTACCA+TGG | + | chr4.4:27569899-27569918 | None:intergenic | 45.0% | |
TTGCACGTGGTAGATACTGT+TGG | - | chr4.4:27571990-27572009 | MS.gene059514:intron | 45.0% | |
TTTCAGGATCAGACGGAAAG+TGG | - | chr4.4:27572704-27572723 | MS.gene059514:intron | 45.0% | |
! | AGACTGTTTGCGAGAGCATA+CGG | + | chr4.4:27570130-27570149 | None:intergenic | 45.0% |
! | GACCCGGCTTTAACTTCAAT+AGG | + | chr4.4:27571784-27571803 | None:intergenic | 45.0% |
! | TCTTCTTCTGAGAAGGCTTC+AGG | - | chr4.4:27570417-27570436 | MS.gene059514:intron | 45.0% |
! | TTCCAGTCAAAACAGGTTGG+AGG | + | chr4.4:27571139-27571158 | None:intergenic | 45.0% |
!! | GAGAAAGCATTTGGGGATGA+TGG | - | chr4.4:27569831-27569850 | MS.gene059514:intron | 45.0% |
!! | GAGAAGTGAAAGGGTTGGTT+TGG | + | chr4.4:27569381-27569400 | None:intergenic | 45.0% |
!! | TGTTTTTCTGGAGGGGAGAA+GGG | - | chr4.4:27570626-27570645 | MS.gene059514:intron | 45.0% |
!! | TTGTTTTTCTGGAGGGGAGA+AGG | - | chr4.4:27570625-27570644 | MS.gene059514:intron | 45.0% |
ACAGGTAACAGCATTCGGGT+GGG | + | chr4.4:27570716-27570735 | None:intergenic | 50.0% | |
ACATGCATACAGCTTGCACG+TGG | - | chr4.4:27571977-27571996 | MS.gene059514:intron | 50.0% | |
ACCGAACCACAAACATGCAC+AGG | - | chr4.4:27571491-27571510 | MS.gene059514:intron | 50.0% | |
AGCACAAGTCTTTCCTCACC+AGG | + | chr4.4:27572311-27572330 | None:intergenic | 50.0% | |
ATTGACAGCAACCTGGCATC+GGG | - | chr4.4:27571429-27571448 | MS.gene059514:intron | 50.0% | |
CACAATCCCAGTCCACCAAA+AGG | + | chr4.4:27570346-27570365 | None:intergenic | 50.0% | |
CCACACAGGTAACAGCATTC+GGG | + | chr4.4:27570720-27570739 | None:intergenic | 50.0% | |
CCACTAAGGATGAACGACAC+AGG | + | chr4.4:27570855-27570874 | None:intergenic | 50.0% | |
CCCTGTGCATGTTTGTGGTT+CGG | + | chr4.4:27571495-27571514 | None:intergenic | 50.0% | |
CCGAACCACAAACATGCACA+GGG | - | chr4.4:27571492-27571511 | MS.gene059514:intron | 50.0% | |
GAGATCCAGGAATTGCCCAA+AGG | + | chr4.4:27571559-27571578 | None:intergenic | 50.0% | |
GGAAAACGCGTGCAAGATAG+TGG | - | chr4.4:27570214-27570233 | MS.gene059514:intron | 50.0% | |
GGGTCTTTGGTTGTCATCCA+TGG | - | chr4.4:27571799-27571818 | MS.gene059514:intron | 50.0% | |
TTCAAAGCTGCCATCCACAC+AGG | + | chr4.4:27571937-27571956 | None:intergenic | 50.0% | |
! | CCCTTGTAGTTGACTTCACC+TGG | - | chr4.4:27572290-27572309 | MS.gene059514:intron | 50.0% |
! | CCTGTGTCGTTCATCCTTAG+TGG | - | chr4.4:27570852-27570871 | MS.gene059514:intron | 50.0% |
! | GTAGTTGACTTCACCTGGTG+AGG | - | chr4.4:27572295-27572314 | MS.gene059514:intron | 50.0% |
! | GTCAAAACAGGTTGGAGGCT+TGG | + | chr4.4:27571134-27571153 | None:intergenic | 50.0% |
!! | GTTTTTCTGGAGGGGAGAAG+GGG | - | chr4.4:27570627-27570646 | MS.gene059514:intron | 50.0% |
!!! | AGCCTCCAACCTGTTTTGAC+TGG | - | chr4.4:27571134-27571153 | MS.gene059514:intron | 50.0% |
CACAAACATGCACAGGGCTG+TGG | - | chr4.4:27571498-27571517 | MS.gene059514:intron | 55.0% | |
CACAGCCCTGTGCATGTTTG+TGG | + | chr4.4:27571500-27571519 | None:intergenic | 55.0% | |
CACAGGTAACAGCATTCGGG+TGG | + | chr4.4:27570717-27570736 | None:intergenic | 55.0% | |
CAGGTAACAGCATTCGGGTG+GGG | + | chr4.4:27570715-27570734 | None:intergenic | 55.0% | |
CCCGAATGCTGTTACCTGTG+TGG | - | chr4.4:27570717-27570736 | MS.gene059514:intron | 55.0% | |
GGTGGAGAAAATAGAGGCGG+TGG | + | chr4.4:27569551-27569570 | None:intergenic | 55.0% | |
GGTTGCCTTTGGGCAATTCC+TGG | - | chr4.4:27571551-27571570 | MS.gene059514:intron | 55.0% | |
TTGACAGCAACCTGGCATCG+GGG | - | chr4.4:27571430-27571449 | MS.gene059514:intron | 55.0% | |
AACATGCACAGGGCTGTGGC+TGG | - | chr4.4:27571502-27571521 | MS.gene059514:intron | 60.0% | |
ACTACTTCACCCCCGATGCC+AGG | + | chr4.4:27571443-27571462 | None:intergenic | 60.0% | |
GGGTGAAGTAGTGCCTCACC+AGG | - | chr4.4:27571451-27571470 | MS.gene059514:intron | 60.0% | |
! | TGACAGCAACCTGGCATCGG+GGG | - | chr4.4:27571431-27571450 | MS.gene059514:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 27569328 | 27572752 | 27569328 | ID=MS.gene059514 |
chr4.4 | mRNA | 27569328 | 27572752 | 27569328 | ID=MS.gene059514.t1;Parent=MS.gene059514 |
chr4.4 | exon | 27572707 | 27572752 | 27572707 | ID=MS.gene059514.t1.exon1;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27572707 | 27572752 | 27572707 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27572501 | 27572625 | 27572501 | ID=MS.gene059514.t1.exon2;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27572501 | 27572625 | 27572501 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27572347 | 27572407 | 27572347 | ID=MS.gene059514.t1.exon3;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27572347 | 27572407 | 27572347 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27572180 | 27572248 | 27572180 | ID=MS.gene059514.t1.exon4;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27572180 | 27572248 | 27572180 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27571580 | 27571698 | 27571580 | ID=MS.gene059514.t1.exon5;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27571580 | 27571698 | 27571580 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27570496 | 27570643 | 27570496 | ID=MS.gene059514.t1.exon6;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27570496 | 27570643 | 27570496 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27570241 | 27570385 | 27570241 | ID=MS.gene059514.t1.exon7;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27570241 | 27570385 | 27570241 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27570044 | 27570130 | 27570044 | ID=MS.gene059514.t1.exon8;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27570044 | 27570130 | 27570044 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
chr4.4 | exon | 27569328 | 27569370 | 27569328 | ID=MS.gene059514.t1.exon9;Parent=MS.gene059514.t1 |
chr4.4 | CDS | 27569328 | 27569370 | 27569328 | ID=cds.MS.gene059514.t1;Parent=MS.gene059514.t1 |
Gene Sequence |
Protein sequence |