AlfalfaGEDB | MS.gene56502

M. sativa cultivar XinJiangDaYe / MS.gene56502

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56502.t1	XP_003607772.1	95.4	388	14	2	1	384	1	388	2.70E-199	704.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56502.t1	Q9ZQ70	44.3	490	144	16	11	384	36	512	2.1e-83	310.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56502.t1	G7JGC0	95.4	388	14	2	1	384	1	388	1.9e-199	704.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene56502.t1	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050148	MS.gene56502	0.848911	4.53E-60	-1.69E-46
MS.gene050149	MS.gene56502	0.828184	1.04E-54	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56502.t1	MTR_4g082580	95.361	388	14	2	1	384	1	388	0.0	761
MS.gene56502.t1	MTR_5g042920	55.056	445	113	15	2	384	13	432	3.27e-138	401
MS.gene56502.t1	MTR_7g011820	41.057	492	167	15	11	384	33	519	2.18e-101	310
MS.gene56502.t1	MTR_3g056100	53.252	246	81	7	136	351	91	332	9.67e-78	246
MS.gene56502.t1	MTR_3g056100	53.252	246	81	7	136	351	235	476	6.11e-77	248
MS.gene56502.t1	MTR_5g094430	50.198	253	93	4	126	346	48	299	1.95e-76	242
MS.gene56502.t1	MTR_5g094430	36.232	138	77	3	144	271	230	366	5.62e-14	73.2
MS.gene56502.t1	MTR_5g094430	50.198	253	93	4	126	346	70	321	2.11e-76	243
MS.gene56502.t1	MTR_5g094430	36.232	138	77	3	144	271	252	388	4.94e-14	73.6
MS.gene56502.t1	MTR_7g071120	42.899	345	133	9	64	374	98	412	3.03e-76	244

Showing 1 to 10 of 166 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56502.t1	AT1G13960	43.878	490	143	14	12	383	37	512	2.13e-103	315
MS.gene56502.t1	AT2G03340	50.789	380	120	14	59	384	146	512	3.22e-103	314
MS.gene56502.t1	AT1G13960	48.787	371	121	11	64	383	7	359	6.01e-93	283
MS.gene56502.t1	AT3G01080	41.686	439	184	15	1	384	38	459	1.62e-83	262
MS.gene56502.t1	AT3G01080	41.247	417	179	14	1	384	38	421	1.21e-77	246
MS.gene56502.t1	AT5G07100	43.750	288	127	5	67	339	29	296	1.05e-72	229
MS.gene56502.t1	AT5G07100	48.750	80	40	1	128	207	219	297	3.23e-15	76.3
MS.gene56502.t1	AT5G07100	38.947	95	47	1	263	346	92	186	5.39e-14	72.4
MS.gene56502.t1	AT5G07100	53.589	209	81	2	131	339	11	203	1.72e-72	226
MS.gene56502.t1	AT5G07100	56.250	64	28	0	144	207	141	204	3.20e-15	74.7

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

Find 96 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGTGATGTGGATCTCT+TGG	0.410616	4.2:+27297514	MS.gene56502:CDS
AAGGGCTGGATTCAGGAGTT+TGG	0.376159	4.2:-27297450	None:intergenic
AAGTGATGTGGATCTCTTGG+AGG	0.597649	4.2:+27297517	MS.gene56502:CDS
AAGTTGGAAAGCAAAGTCAT+GGG	0.630381	4.2:-27295442	None:intergenic
AAGTTGTGAATGGTTGGAGG+TGG	0.597067	4.2:+27295379	None:intergenic
AATGGAGAGTGGCCTTCAGG+TGG	0.546609	4.2:+27295403	MS.gene56502:CDS
ACAAGTGACAGTGAGGAAGA+AGG	0.529857	4.2:+27297089	MS.gene56502:CDS
ACAGTCCTATGTGAAAGGGC+TGG	0.559923	4.2:-27297464	None:intergenic
ACGACGACGGCTACAACTGG+AGG	0.636486	4.2:+27296853	MS.gene56502:CDS
ACGTTGGATGTGGAGCATGG+AGG	0.754990	4.2:+27295517	MS.gene56502:CDS

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGTAACTAAGCATTTCTG+AGG	-	chr4.2:27297926-27297945	None:intergenic	30.0%
AATTTCAAGGTCAAGAATGT+TGG	+	chr4.2:27297839-27297858	MS.gene56502:intron	30.0%
AGTATTTATTGCTCACGAAA+AGG	+	chr4.2:27295927-27295946	MS.gene56502:intron	30.0%
ATATGTAATCACCTTGGATA+TGG	-	chr4.2:27297590-27297609	None:intergenic	30.0%
ATGTAACTAAGCATTTCTGA+GGG	-	chr4.2:27297925-27297944	None:intergenic	30.0%
GCATTCTTGTATCATAATGT+AGG	+	chr4.2:27298036-27298055	MS.gene56502:intron	30.0%
TATGTAATCACCTTGGATAT+GGG	-	chr4.2:27297589-27297608	None:intergenic	30.0%
TATGTTGTCAATACAGCTTT+AGG	-	chr4.2:27298128-27298147	None:intergenic	30.0%
TTAACCAGCCAAATAAATAG+TGG	-	chr4.2:27296566-27296585	None:intergenic	30.0%
TTAATTTCATCGAGCTTAAG+GGG	-	chr4.2:27295698-27295717	None:intergenic	30.0%

Showing 1 to 10 of 167 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	27295388	27298322	27295388	ID=MS.gene56502
chr4.2	mRNA	27295388	27298322	27295388	ID=MS.gene56502.t1;Parent=MS.gene56502
chr4.2	exon	27295388	27295603	27295388	ID=MS.gene56502.t1.exon1;Parent=MS.gene56502.t1
chr4.2	CDS	27295388	27295603	27295388	ID=cds.MS.gene56502.t1;Parent=MS.gene56502.t1
chr4.2	exon	27296642	27297156	27296642	ID=MS.gene56502.t1.exon2;Parent=MS.gene56502.t1
chr4.2	CDS	27296642	27297156	27296642	ID=cds.MS.gene56502.t1;Parent=MS.gene56502.t1
chr4.2	exon	27297439	27297597	27297439	ID=MS.gene56502.t1.exon3;Parent=MS.gene56502.t1
chr4.2	CDS	27297439	27297597	27297439	ID=cds.MS.gene56502.t1;Parent=MS.gene56502.t1
chr4.2	exon	27298058	27298322	27298058	ID=MS.gene56502.t1.exon4;Parent=MS.gene56502.t1
chr4.2	CDS	27298058	27298322	27298058	ID=cds.MS.gene56502.t1;Parent=MS.gene56502.t1

Gene Sequence

>MS.gene56502

ATGGTTGGAGGTGGAAATGGAGAGTGGCCTTCAGGTGGGGGGTTTAGTCCTGGTCCCATGACTTTGCTTTCCAACTTGTTTGGTGACAACGATGACTGCAAGTCTTTCTCGGAGCTCCTCGCCGGCGACACGTTGGATGTGGAGCATGGAGGAGGAGGAGGAGGAAGAGGTGGTGGTGGCTTGTCTCCGTTGGCCATGTTCACTTCTCCACCTCAGGTAATATCCTTCAACTCATTCTTAACTATTGCTTGTCTTTGTTTCATTTTTTGCTTCCATAGAGTCAAGTCAACGGTAATCCACCACATGACCCCTTAAGCTCGATGAAATTAAAAAGTTACACCTATCTCATTCTCTAAATATAGGACTGATTAAAACTCATAATAATTTTTCTTAAAAAAAAAAAAAAAAAAACTAACAAGAATTTTCCTGAAAAAAATTCGTAGTTGTATTATTTTTGTTAATAATTAAAAAGTATATTGGTTGGTTTTTTAAGTGTACAATTTCCAAGAAAGATATCACTCATTTTTATTTTTTATTATAGTATTTATTGCTCACGAAAAGGAGGTAATTAAGAGTGATTTAACAAATAAAAAATTAATTCAATTAATTTTTTTCGAAAAAGTGTTATAAAAAAATTAAGAATTAAGTAAATTTTTCAAAAGTATTTTAAGAAAAAGTGTTATAAACGTTCTCCTAAAAAAAGGAATAAACATATGAATTTTTTGCAAAAAAAAAACATATGGATTTTAATGGTAGATAAAATCTTTAGAATAAATTCAAATGTTAAATAAATTTTGTCTATAAAGTATCGGTATCCGACCAAACTCAAAGATACCTAAGAATTTTTGAATTTATTCAAAAAAAATTACTTAAGTATTTAGTGAACTGAAAAACAATAGTACTTGCTTTATGTAATTATAGTCATTCAATCTTCTTACAAAAGAAGGTACTTGATCTCAAGTTTCATTTTGGAGTCTAAATGATCAAGTGCTTTCTGGCTACTACTATATATGCTTCAATTAGGATAAGGCATGCACATTTGATTAGCTAAGTTAGGAGTTACTTCACATCTGATTGGAATTGGAATATTAAACAAGGATGAATGAAATACACGAAATCAAAAGATACCTTGGAAGTTTGGATTAAATTAAATTAAGTGATGCAGCAAAATTCAACCACTATTTATTTGGCTGGTTAACATAATCATTCTAAATTTGAATTGAAGTATTTTTTGTTTCCTTATTCTCCCAACAGCAAGCAGGAGCACAAGCCTACTCAAATGCTCATGTCCAATCTGAACATCCATTTTCTGCATCATTAGTACCCAACAGTACCTCATTGACACAAGTTCCATCAATAACATTCAATAACATTGCACAACAGCTGATACCAAACTCTGTTGAGTATTCTTCTAACTCAGAACAAAGATTACACAAGTCTTCTTCTGTGAATGTTGACAAGGCTAACGACGACGGCTACAACTGGAGGAAGTATGGACAGAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAGTGCACACATCCAAGCTGTCTTGTGACAAAAAAAGTTGAACGCGATCCTGTAGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACATTCATCAACGCCCACGTCCTAGCAAGCTCACAAACGACAATTCAAGCGTGCAACAAGTTTTGTCAGGAACAAGTGACAGTGAGGAAGAAGGAGATCATGAAACTGAAGTAGATTATGAACCTGGTCTCAAGAGAAGGTAAAGGGTTAAAAGTTCGTAAAACTGTTCTTGTTACGATTAATCTATTAGTTTTGAGATTAATTTTGATGCACCGTTGGTGTAATTCTGTCAATCAATCACAAACCATCATTTGTATGACTTTTAAGGTAGATATGATTAAAATTAAATATTTTTAATAACCAAACAGCTATGAATTATGATTGATCGACAATATAAAAGGTATTTACACTATCGATACATATCAATCAAATAATGCATTTAGTTTTATGTGACGATGTTAGGAGTTTTATGATTCTGCAGAAAAACAGAAGCCAAACTCCTGAATCCAGCCCTTTCACATAGGACTGTCTCAAAGCCTAAAATCATTGTGCAAACAACAAGTGATGTGGATCTCTTGGAGGATGGATATAGATGGCGCAAATACGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGTGATTACATATTTACATCTACTTAGTTATATAGGGTCGAACAATTTAGTCCCTAAAGTTGTATCACTAATTTACTTGAGCAGCAAAAATGTATCACAAATTTTGTGTCTGAAGTTGCAGGAGTTGAGCAATTTAATTTAGTCTTTGAAACAAACGAAACTTTGAAATGATTCATGAAATTGAAAATCTTTCAATAACATTAGTCCACACATTCAGGACAATTTTAGTGACTAAACTCTATAATTTCAAGGTCAAGAATGTTGGTTCACTCTAACTGTTGATGACCATTAGGATTGTCTACTAGAGCTTTCAAAAAACTTTGTTCCCTCAGAAATGCTTAGTTACATTCATCATATTCAGATTATGCTACATAGTAAAATCACAGTATACTTATAGCATACAGACTTGAGATCCATGTTCTAGAAAAGATAGTGATGTGCATTCTTGTATCATAATGTAGGAGCTATTACAAATGCACAACTCCGGGTTGCAATGTTCGGAAGCATGTTGAGAGGGTTTCAACGGATCCTAAAGCTGTATTGACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAACAGTCATAACCTTGCTAGCAATAATAGTGCATCACTGCTAAAATCACAAAATGAGATGCAGAATTTCAACAGAAGGGGTCAACATCAGCCTTCAGCAGTGGCACATCTAAGATTGAAGGAAGAGCATATATAA

Protein sequence

>MS.gene56502.t1

MVGGGNGEWPSGGGFSPGPMTLLSNLFGDNDDCKSFSELLAGDTLDVEHGGGGGGRGGGGLSPLAMFTSPPQQAGAQAYSNAHVQSEHPFSASLVPNSTSLTQVPSITFNNIAQQLIPNSVEYSSNSEQRLHKSSSVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCLVTKKVERDPVDGHVTAIIYKGEHIHQRPRPSKLTNDNSSVQQVLSGTSDSEEEGDHETEVDYEPGLKRRKTEAKLLNPALSHRTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVLTTYEGKHNHDVPAAKTNSHNLASNNSASLLKSQNEMQNFNRRGQHQPSAVAHLRLKEEHI