AlfalfaGEDB | MS.gene050149

M. sativa cultivar XinJiangDaYe / MS.gene050149

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050149.t1	XP_024640239.1	86.5	207	25	2	2	206	1	206	3.00E-96	361.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050149.t1	Q9SKK8	33.1	175	99	8	32	194	43	211	4.6e-13	76.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050149.t1	G7JXF0	86.5	207	25	2	2	206	1	206	2.2e-96	361.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050148	MS.gene050149	0.969114	1.19E-129	-1.69E-46
MS.gene050149	MS.gene050161	0.834036	3.78E-56	-1.69E-46
MS.gene050149	MS.gene050961	0.815644	8.32E-52	-1.69E-46
MS.gene050149	MS.gene05861	0.817831	2.69E-52	-1.69E-46
MS.gene050149	MS.gene05862	0.800796	1.22E-48	-1.69E-46
MS.gene050149	MS.gene05969	0.819625	1.05E-52	-1.69E-46
MS.gene050149	MS.gene063690	0.803845	2.87E-49	-1.69E-46
MS.gene050149	MS.gene067567	0.803327	3.68E-49	-1.69E-46
MS.gene050149	MS.gene072560	0.812034	5.19E-51	-1.69E-46
MS.gene050149	MS.gene09747	0.974423	3.95E-138	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050149.t1	MTR_5g013030	88.889	207	20	2	2	206	1	206	1.58e-117	334
MS.gene050149.t1	MTR_8g027745	30.488	164	99	5	30	185	33	189	5.54e-15	72.8
MS.gene050149.t1	MTR_3g091200	32.044	181	106	8	28	199	43	215	6.50e-15	72.8
MS.gene050149.t1	MTR_4g073230	32.593	135	77	4	1	124	8	139	1.52e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050149.t1	AT5G53110	32.338	201	108	8	27	204	39	234	6.59e-18	81.3
MS.gene050149.t1	AT2G25410	32.955	176	100	8	31	194	42	211	2.13e-16	77.0
MS.gene050149.t1	AT2G46495	28.655	171	102	8	29	185	35	199	1.52e-13	68.6
MS.gene050149.t1	AT2G46495	28.655	171	102	8	29	185	35	199	1.57e-13	68.6
MS.gene050149.t1	AT5G36001	29.560	159	94	8	29	185	41	183	4.68e-12	63.2
MS.gene050149.t1	AT5G36001	29.560	159	94	8	29	185	41	183	2.10e-11	62.4

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Find 35 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTTGTGGAGCAATTG+AGG	0.638737	5.4:-6618244	None:intergenic
AACTAGGCATAGGAACTTCA+GGG	0.534743	5.4:-6618331	None:intergenic
AAGAAGAGTGAATTCATCAT+TGG	0.384353	5.4:-6617885	None:intergenic
AAGCTCAAAACCAGAAAGAG+TGG	0.602365	5.4:-6618033	None:intergenic
AATACCGTTGCAGTTAACAG+AGG	0.663218	5.4:-6617940	None:intergenic
ACCATATGATGGAAAATGAA+TGG	0.555827	5.4:-6618078	None:intergenic
ACGGTGTAAAGGTGAGGTTA+AGG	0.543625	5.4:-6618187	None:intergenic
ACTATCAAATCACCATATGA+TGG	0.503242	5.4:-6618089	None:intergenic
AGAACGTAATAGTATTGGAA+CGG	0.607440	5.4:-6618206	None:intergenic
AGACTGTTGTCTGAAATATA+AGG	0.324770	5.4:-6618398	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATCAAATCACCATATGA+TGG	-	chr5.4:6618092-6618111	None:intergenic	30.0%
CACTATCCATTTCACATAAA+GGG	+	chr5.4:6617978-6617997	MS.gene050149:CDS	30.0%
TATATTTCAGACAACAGTCT+TGG	+	chr5.4:6618401-6618420	MS.gene050149:CDS	30.0%
TCACTATCCATTTCACATAA+AGG	+	chr5.4:6617977-6617996	MS.gene050149:CDS	30.0%
GAAGATGAAAACCAAGAAGA+GGG	-	chr5.4:6617916-6617935	None:intergenic	35.0%
GAATCTGAGAAAGCAAAGAA+TGG	+	chr5.4:6618449-6618468	MS.gene050149:CDS	35.0%
TATGATGATACCACTCTTTC+TGG	+	chr5.4:6618023-6618042	MS.gene050149:CDS	35.0%
TGAAATGGATAGTGAATGTC+AGG	-	chr5.4:6617972-6617991	None:intergenic	35.0%
TGTTGACCCTTTATGTGAAA+TGG	-	chr5.4:6617987-6618006	None:intergenic	35.0%
AACTAGGCATAGGAACTTCA+GGG	-	chr5.4:6618334-6618353	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	6617888	6618508	6617888	ID=MS.gene050149
chr5.4	mRNA	6617888	6618508	6617888	ID=MS.gene050149.t1;Parent=MS.gene050149
chr5.4	exon	6617888	6618508	6617888	ID=MS.gene050149.t1.exon1;Parent=MS.gene050149.t1
chr5.4	CDS	6617888	6618508	6617888	ID=cds.MS.gene050149.t1;Parent=MS.gene050149.t1

Gene Sequence

>MS.gene050149

ATGATGAATTCACTCTTCTTTCTCACCCTCTTCTTGGTTTTCATCTTCCAAACCTCTGTTAACTGCAACGGTATTGCTGGTCCTGACATTCACTATCCATTTCACATAAAGGGTCAACAGCAACAACAACAAGAGTATGATGATACCACTCTTTCTGGTTTTGAGCTTCTTCGCAAAGACAACATCACCACCATTCATTTTCCATCATATGGTGATTTGATAGTCAAGTCCATTTCCTATGACACCAAAAAGATTGATCTTCTTGATCCAAAAAACTGTGTCCACAGAGTCTTTCTCAACCTTAACCTCACCTTTACACCGTTCCAATACTATTACGTTCTTAAAAACTTCACATACCTCAATTGCTCCACAAGACTTTCACAAACAAAATTCATTGAAGTTCCATGTTTAAGTGATTCAAGTTATCATGTTTACACAGTTGACCCTGAAGTTCCTATGCCTAGTTCATGTAAAAAAGTCAAAACCATTGCTATTCCTTTCAAATATAGCCCTTATATTTCAGACAACAGTCTTGGTCTTAGATTAACATGGGACTTGCGTGAATCTGAGAAAGCAAAGAATGGAACAAGACTAGAGATTCTCACACAGCACGCAATACAG

Protein sequence

>MS.gene050149.t1

MMNSLFFLTLFLVFIFQTSVNCNGIAGPDIHYPFHIKGQQQQQQEYDDTTLSGFELLRKDNITTIHFPSYGDLIVKSISYDTKKIDLLDPKNCVHRVFLNLNLTFTPFQYYYVLKNFTYLNCSTRLSQTKFIEVPCLSDSSYHVYTVDPEVPMPSSCKKVKTIAIPFKYSPYISDNSLGLRLTWDLRESEKAKNGTRLEILTQHAIQ