Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56530.t1 | PON34059.1 | 61.2 | 201 | 68 | 5 | 1 | 192 | 366 | 565 | 1.90E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56530.t1 | O94417 | 39.8 | 118 | 48 | 1 | 75 | 192 | 206 | 300 | 1.9e-13 | 77.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56530.t1 | A0A2P5ABZ4 | 61.2 | 201 | 68 | 5 | 1 | 192 | 366 | 565 | 1.4e-57 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052358 | MS.gene56530 | -0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene052361 | MS.gene56530 | -0.803811 | 2.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56530.t1 | MTR_8g030840 | 67.692 | 195 | 45 | 2 | 1 | 192 | 346 | 525 | 1.09e-83 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56530.t1 | AT1G31870 | 53.807 | 197 | 71 | 4 | 1 | 192 | 374 | 555 | 5.19e-60 | 196 |
| MS.gene56530.t1 | AT1G31870 | 53.807 | 197 | 71 | 4 | 1 | 192 | 374 | 555 | 5.19e-60 | 196 |
Find 49 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCACTGCGTTTCTTATC+TGG | 0.247015 | 4.4:+30509711 | MS.gene56530:CDS |
| GCCTTATCCCATATCGATTA+GGG | 0.298324 | 4.4:-30511962 | None:intergenic |
| AAAACAGAAAGTAGTCAAAA+AGG | 0.340080 | 4.4:+30509673 | MS.gene56530:CDS |
| TGACTTTAAGTGTTCCTCTT+TGG | 0.342247 | 4.4:-30509651 | None:intergenic |
| ACCTTTACTAAATGTTTCAT+AGG | 0.355940 | 4.4:-30511733 | None:intergenic |
| CTCTTCAACCAGCTGTGATC+TGG | 0.363715 | 4.4:-30511924 | None:intergenic |
| TTCTGCAATTTATTAAGTTC+AGG | 0.364688 | 4.4:-30511688 | None:intergenic |
| TGCAGAAGGAGAAGGTACTA+TGG | 0.381597 | 4.4:+30511704 | MS.gene56530:CDS |
| GGCCTTATCCCATATCGATT+AGG | 0.397775 | 4.4:-30511963 | None:intergenic |
| AGAGCCTGACCTTCCGAACT+TGG | 0.414914 | 4.4:+30511860 | MS.gene56530:CDS |
| CCTTTGTTATCACGAAATAC+AGG | 0.426571 | 4.4:-30509337 | None:intergenic |
| GTATACCTGGTCCGTGCAAA+AGG | 0.446709 | 4.4:-30510417 | None:intergenic |
| GCGCCGTGCCCACTGATGCT+CGG | 0.447075 | 4.4:-30509310 | None:intergenic |
| CGCCGTGCCCACTGATGCTC+GGG | 0.452069 | 4.4:-30509309 | None:intergenic |
| GAGCCTGACCTTCCGAACTT+GGG | 0.455564 | 4.4:+30511861 | MS.gene56530:CDS |
| GGATAAGGCCGGGACGACAC+TGG | 0.471920 | 4.4:+30511976 | MS.gene56530:CDS |
| AGTGCTGCACAAAATACCTT+TGG | 0.479892 | 4.4:-30509696 | None:intergenic |
| CCCCTAATCGATATGGGATA+AGG | 0.486802 | 4.4:+30511961 | MS.gene56530:CDS |
| AAGTTCGGAAGGTCAGGCTC+TGG | 0.502945 | 4.4:-30511858 | None:intergenic |
| GATAAGGCCGGGACGACACT+GGG | 0.506196 | 4.4:+30511977 | MS.gene56530:CDS |
| AAAAGAACTAGAAGATGAGA+AGG | 0.518213 | 4.4:+30510389 | MS.gene56530:CDS |
| GAGACAAGCTGAAGAGAAAG+AGG | 0.520542 | 4.4:+30512167 | MS.gene56530:CDS |
| AGCCTGACCTTCCGAACTTG+GGG | 0.530476 | 4.4:+30511862 | MS.gene56530:CDS |
| ATTGAAATAGATTGTAGCAA+GGG | 0.542028 | 4.4:+30510333 | MS.gene56530:CDS |
| TCCTATGAAACATTTAGTAA+AGG | 0.547545 | 4.4:+30511732 | MS.gene56530:CDS |
| AAGATATTCCAGATCACAGC+TGG | 0.549487 | 4.4:+30511916 | MS.gene56530:CDS |
| TAATCGATATGGGATAAGGC+CGG | 0.549589 | 4.4:+30511965 | MS.gene56530:CDS |
| ACACCATCCCAGTGTCGTCC+CGG | 0.550677 | 4.4:-30511984 | None:intergenic |
| CAGATCACAGCTGGTTGAAG+AGG | 0.552603 | 4.4:+30511925 | MS.gene56530:CDS |
| CAGATGGACCCGAGCATCAG+TGG | 0.555622 | 4.4:+30509301 | None:intergenic |
| AATCGATATGGGATAAGGCC+GGG | 0.564665 | 4.4:+30511966 | MS.gene56530:CDS |
| GCAGAAGGAGAAGGTACTAT+GGG | 0.566961 | 4.4:+30511705 | MS.gene56530:CDS |
| GCAAGGGCTTGACTCAAAAG+TGG | 0.567176 | 4.4:+30510349 | MS.gene56530:CDS |
| TAATAAATTGCAGAAGGAGA+AGG | 0.576609 | 4.4:+30511696 | MS.gene56530:CDS |
| CTGTGATCTGGAATATCTTG+AGG | 0.579188 | 4.4:-30511912 | None:intergenic |
| GATGGTGTCGATCGCAGTAA+TGG | 0.580754 | 4.4:+30511999 | MS.gene56530:CDS |
| GACCCGAGCATCAGTGGGCA+CGG | 0.580960 | 4.4:+30509307 | MS.gene56530:CDS |
| TGAACTTAATAAATTGCAGA+AGG | 0.587762 | 4.4:+30511690 | MS.gene56530:CDS |
| AGATCACAGCTGGTTGAAGA+GGG | 0.601625 | 4.4:+30511926 | MS.gene56530:CDS |
| AAGAGAAAGAGGCTTATCTC+CGG | 0.607781 | 4.4:+30512178 | MS.gene56530:CDS |
| AATTGAAATAGATTGTAGCA+AGG | 0.616455 | 4.4:+30510332 | MS.gene56530:CDS |
| CCTGTATTTCGTGATAACAA+AGG | 0.628064 | 4.4:+30509337 | MS.gene56530:CDS |
| AGATGGACCCGAGCATCAGT+GGG | 0.630466 | 4.4:+30509302 | None:intergenic |
| AGGACGACGCGTTACCAAAG+AGG | 0.631726 | 4.4:+30509637 | MS.gene56530:intron |
| AGGCCGGGACGACACTGGGA+TGG | 0.633533 | 4.4:+30511981 | MS.gene56530:CDS |
| CTTATCCCATATCGATTAGG+GGG | 0.645050 | 4.4:-30511960 | None:intergenic |
| GACTCAAAAGTGGAAAGCCG+AGG | 0.652702 | 4.4:+30510359 | MS.gene56530:CDS |
| GCCTGACCTTCCGAACTTGG+GGG | 0.661087 | 4.4:+30511863 | MS.gene56530:CDS |
| CCTTATCCCATATCGATTAG+GGG | 0.662538 | 4.4:-30511961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTCATTTTTTAGAAAAAA+TGG | + | chr4.4:30511012-30511031 | MS.gene56530:intron | 15.0% |
| !!! | AGGAAAAAATAGATTTTTTT+TGG | - | chr4.4:30510826-30510845 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTGATTTTTTTAA+AGG | - | chr4.4:30510846-30510865 | None:intergenic | 15.0% |
| !!! | TAGAAAAAATGGATTTTTAT+GGG | + | chr4.4:30511023-30511042 | MS.gene56530:intron | 15.0% |
| !!! | TTAGAAAAAATGGATTTTTA+TGG | + | chr4.4:30511022-30511041 | MS.gene56530:intron | 15.0% |
| !! | AAAATCCAAGTATAAAAATC+TGG | - | chr4.4:30512040-30512059 | None:intergenic | 20.0% |
| !! | AACATTTCTCATTATAATAC+AGG | + | chr4.4:30512065-30512084 | MS.gene56530:intron | 20.0% |
| !! | AAGTTACACTATATTCTATA+TGG | - | chr4.4:30509800-30509819 | None:intergenic | 20.0% |
| !! | ACATTTCTCATTATAATACA+GGG | + | chr4.4:30512066-30512085 | MS.gene56530:intron | 20.0% |
| !! | AGTAAAATCTTACTTCAAAA+TGG | + | chr4.4:30511346-30511365 | MS.gene56530:intron | 20.0% |
| !! | ATATTTGTTTCACAAATGAA+TGG | + | chr4.4:30510729-30510748 | MS.gene56530:intron | 20.0% |
| !! | GAAAAATCACTAAACAAATA+TGG | - | chr4.4:30510032-30510051 | None:intergenic | 20.0% |
| !! | TAATTGACATGTAAAAACAT+TGG | - | chr4.4:30511817-30511836 | None:intergenic | 20.0% |
| !! | TTGATAGATTAATTTCTCAT+AGG | - | chr4.4:30510767-30510786 | None:intergenic | 20.0% |
| !!! | AGTAAGATTTTACTAAAAAG+TGG | - | chr4.4:30511340-30511359 | None:intergenic | 20.0% |
| !!! | ATCTATTTTTTTCAACAACA+AGG | + | chr4.4:30510967-30510986 | MS.gene56530:intron | 20.0% |
| !!! | TCATGTTTTCTTAAGAAAAA+TGG | + | chr4.4:30510275-30510294 | MS.gene56530:intron | 20.0% |
| !!! | TCATTTTTAAGTGTTTGTTT+TGG | + | chr4.4:30510864-30510883 | MS.gene56530:intron | 20.0% |
| ! | AAAAAAGTTGACACTCATTA+TGG | - | chr4.4:30511465-30511484 | None:intergenic | 25.0% |
| ! | AAAACAGAAAGTAGTCAAAA+AGG | + | chr4.4:30509673-30509692 | MS.gene56530:CDS | 25.0% |
| ! | AAAATAATAGACTTGGAAGT+TGG | - | chr4.4:30511400-30511419 | None:intergenic | 25.0% |
| ! | AACAAATGCAACATAAGATA+GGG | - | chr4.4:30511649-30511668 | None:intergenic | 25.0% |
| ! | AATAGCTGTTATATTTGTTC+AGG | + | chr4.4:30511253-30511272 | MS.gene56530:intron | 25.0% |
| ! | AATCACTAAGCAAATAAAGA+TGG | - | chr4.4:30509920-30509939 | None:intergenic | 25.0% |
| ! | AATTGAAATAGATTGTAGCA+AGG | + | chr4.4:30510332-30510351 | MS.gene56530:CDS | 25.0% |
| ! | ACCTTTACTAAATGTTTCAT+AGG | - | chr4.4:30511736-30511755 | None:intergenic | 25.0% |
| ! | ATTGAAATAGATTGTAGCAA+GGG | + | chr4.4:30510333-30510352 | MS.gene56530:CDS | 25.0% |
| ! | GAGGAAAATAAAAAGAGAAA+TGG | + | chr4.4:30509490-30509509 | MS.gene56530:intron | 25.0% |
| ! | TAGAATCATGTATCTTTACA+AGG | - | chr4.4:30509870-30509889 | None:intergenic | 25.0% |
| ! | TATAAACCAATTTACACAGT+TGG | - | chr4.4:30510712-30510731 | None:intergenic | 25.0% |
| ! | TATACTTATATTACCTCTAG+AGG | + | chr4.4:30510107-30510126 | MS.gene56530:intron | 25.0% |
| ! | TATCCTTGATAAACCTAATA+TGG | + | chr4.4:30510616-30510635 | MS.gene56530:intron | 25.0% |
| ! | TCCTAAAATGAAAAGCTATT+AGG | + | chr4.4:30510928-30510947 | MS.gene56530:intron | 25.0% |
| ! | TCCTATGAAACATTTAGTAA+AGG | + | chr4.4:30511732-30511751 | MS.gene56530:CDS | 25.0% |
| ! | TGAACTTAATAAATTGCAGA+AGG | + | chr4.4:30511690-30511709 | MS.gene56530:CDS | 25.0% |
| ! | TTCATATTTCAATACAGCAT+AGG | - | chr4.4:30509948-30509967 | None:intergenic | 25.0% |
| ! | TTCTGCAATTTATTAAGTTC+AGG | - | chr4.4:30511691-30511710 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | - | chr4.4:30510932-30510951 | None:intergenic | 25.0% |
| !! | TTATTGTTATGCTTTTGTCT+GGG | + | chr4.4:30511304-30511323 | MS.gene56530:intron | 25.0% |
| !!! | TATTTTTTTCAACAACAAGG+AGG | + | chr4.4:30510970-30510989 | MS.gene56530:intron | 25.0% |
| AAAAGAACTAGAAGATGAGA+AGG | + | chr4.4:30510389-30510408 | MS.gene56530:CDS | 30.0% | |
| AGAGCTGAAGTCAATAATTT+AGG | - | chr4.4:30512099-30512118 | None:intergenic | 30.0% | |
| CAACAAATGCAACATAAGAT+AGG | - | chr4.4:30511650-30511669 | None:intergenic | 30.0% | |
| CAGGTTCAAAATAATAGACT+TGG | - | chr4.4:30511407-30511426 | None:intergenic | 30.0% | |
| CTACCATATTAGGTTTATCA+AGG | - | chr4.4:30510622-30510641 | None:intergenic | 30.0% | |
| TAATAAATTGCAGAAGGAGA+AGG | + | chr4.4:30511696-30511715 | MS.gene56530:CDS | 30.0% | |
| TTACTAAAAAGTGGAACTGA+GGG | - | chr4.4:30511331-30511350 | None:intergenic | 30.0% | |
| TTCATACTTCAATACAGCAT+AGG | - | chr4.4:30510057-30510076 | None:intergenic | 30.0% | |
| TTTACTAAAAAGTGGAACTG+AGG | - | chr4.4:30511332-30511351 | None:intergenic | 30.0% | |
| ! | AAAATGGCAAGTTGAGTTAT+TGG | + | chr4.4:30510291-30510310 | MS.gene56530:intron | 30.0% |
| ! | ATCAGCCAGATTTTTATACT+TGG | + | chr4.4:30512032-30512051 | MS.gene56530:intron | 30.0% |
| ! | ATCTATCAACTTGCTTGTTA+AGG | + | chr4.4:30510778-30510797 | MS.gene56530:intron | 30.0% |
| ! | ATTTTGTAGCTTTCCATTTG+GGG | + | chr4.4:30509539-30509558 | MS.gene56530:intron | 30.0% |
| ! | CATTTTGTAGCTTTCCATTT+GGG | + | chr4.4:30509538-30509557 | MS.gene56530:intron | 30.0% |
| ! | GTTATTGTTATGCTTTTGTC+TGG | + | chr4.4:30511303-30511322 | MS.gene56530:intron | 30.0% |
| ! | TCTATCAACTTGCTTGTTAA+GGG | + | chr4.4:30510779-30510798 | MS.gene56530:intron | 30.0% |
| !!! | AATCTCTAGAACTACTCTTT+TGG | + | chr4.4:30510550-30510569 | MS.gene56530:intron | 30.0% |
| AAAGTAGTCAAAAAGGCCAA+AGG | + | chr4.4:30509680-30509699 | MS.gene56530:CDS | 35.0% | |
| AACGGTAAACAATGTTTAGC+AGG | - | chr4.4:30511426-30511445 | None:intergenic | 35.0% | |
| AAGTTGACACTCATTATGGA+TGG | - | chr4.4:30511461-30511480 | None:intergenic | 35.0% | |
| AGATGACTGAAAGTCTAGTA+TGG | - | chr4.4:30510587-30510606 | None:intergenic | 35.0% | |
| ATCTACTCACACGATAAACT+CGG | - | chr4.4:30511588-30511607 | None:intergenic | 35.0% | |
| CCTGTATTTCGTGATAACAA+AGG | + | chr4.4:30509337-30509356 | MS.gene56530:CDS | 35.0% | |
| TACTAAAAAGTGGAACTGAG+GGG | - | chr4.4:30511330-30511349 | None:intergenic | 35.0% | |
| TAGTTGTGCAGTTATACAGT+TGG | + | chr4.4:30509515-30509534 | MS.gene56530:intron | 35.0% | |
| TGACTTTAAGTGTTCCTCTT+TGG | - | chr4.4:30509654-30509673 | None:intergenic | 35.0% | |
| TGCAATGCAACTCTAATTGT+TGG | + | chr4.4:30511758-30511777 | MS.gene56530:intron | 35.0% | |
| TGGAAGTTGGAAGAAAGTTA+TGG | - | chr4.4:30511387-30511406 | None:intergenic | 35.0% | |
| TGGATTACGAAAAATCTACC+CGG | - | chr4.4:30511187-30511206 | None:intergenic | 35.0% | |
| TGTTGGACACTTACAATGAA+GGG | + | chr4.4:30511775-30511794 | MS.gene56530:intron | 35.0% | |
| TGTTTCATGCACAACTATGT+TGG | + | chr4.4:30509823-30509842 | MS.gene56530:intron | 35.0% | |
| TTATTGCAGGCTACCATATT+AGG | - | chr4.4:30510632-30510651 | None:intergenic | 35.0% | |
| TTGTTGGACACTTACAATGA+AGG | + | chr4.4:30511774-30511793 | MS.gene56530:intron | 35.0% | |
| ! | AAAGCCTTATCCAACTAAGT+GGG | - | chr4.4:30510224-30510243 | None:intergenic | 35.0% |
| ! | ACATTTTCCTTCTGTATACC+TGG | - | chr4.4:30510433-30510452 | None:intergenic | 35.0% |
| ! | CCTTTGTTATCACGAAATAC+AGG | - | chr4.4:30509340-30509359 | None:intergenic | 35.0% |
| ! | GCATTTTGTAGCTTTCCATT+TGG | + | chr4.4:30509537-30509556 | MS.gene56530:intron | 35.0% |
| ! | TAGTTCTTTTTGCTTAGCCT+CGG | - | chr4.4:30510379-30510398 | None:intergenic | 35.0% |
| ! | TCAATCAAGCTGAATTTTGC+AGG | + | chr4.4:30509617-30509636 | MS.gene56530:intron | 35.0% |
| !! | ACTCTTTTAAGTCAACGAAG+TGG | - | chr4.4:30511207-30511226 | None:intergenic | 35.0% |
| !! | AGAGAGTGCAACTTTTTCTT+TGG | + | chr4.4:30509563-30509582 | MS.gene56530:intron | 35.0% |
| !! | GAGAGTGCAACTTTTTCTTT+GGG | + | chr4.4:30509564-30509583 | MS.gene56530:intron | 35.0% |
| AAAGTTGTGTTGTGGTCATG+TGG | + | chr4.4:30510457-30510476 | MS.gene56530:intron | 40.0% | |
| AAGATATTCCAGATCACAGC+TGG | + | chr4.4:30511916-30511935 | MS.gene56530:CDS | 40.0% | |
| AAGGCTGCTAAGGAGAATTA+GGG | - | chr4.4:30511156-30511175 | None:intergenic | 40.0% | |
| AGTGCTGCACAAAATACCTT+TGG | - | chr4.4:30509699-30509718 | None:intergenic | 40.0% | |
| ATGACCACAACACAACTTTC+TGG | - | chr4.4:30510456-30510475 | None:intergenic | 40.0% | |
| ATGTCCAGAAAGTTGTGTTG+TGG | + | chr4.4:30510449-30510468 | MS.gene56530:intron | 40.0% | |
| GGATTACGAAAAATCTACCC+GGG | - | chr4.4:30511186-30511205 | None:intergenic | 40.0% | |
| TAATCGATATGGGATAAGGC+CGG | + | chr4.4:30511965-30511984 | MS.gene56530:CDS | 40.0% | |
| TGACACTCATTATGGATGGA+GGG | - | chr4.4:30511457-30511476 | None:intergenic | 40.0% | |
| TTCTCGCTTCAATACAGCAT+AGG | - | chr4.4:30510169-30510188 | None:intergenic | 40.0% | |
| TTGACACTCATTATGGATGG+AGG | - | chr4.4:30511458-30511477 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCAACTAAGTG+GGG | - | chr4.4:30510223-30510242 | None:intergenic | 40.0% |
| ! | CAAAGCCTTATCCAACTAAG+TGG | - | chr4.4:30510225-30510244 | None:intergenic | 40.0% |
| ! | CCTTATCCCATATCGATTAG+GGG | - | chr4.4:30511964-30511983 | None:intergenic | 40.0% |
| ! | CGTTAAGCTCTAGTTATTGC+AGG | - | chr4.4:30510645-30510664 | None:intergenic | 40.0% |
| ! | CTGTGATCTGGAATATCTTG+AGG | - | chr4.4:30511915-30511934 | None:intergenic | 40.0% |
| ! | CTTATCCCATATCGATTAGG+GGG | - | chr4.4:30511963-30511982 | None:intergenic | 40.0% |
| ! | GCCTTATCCCATATCGATTA+GGG | - | chr4.4:30511965-30511984 | None:intergenic | 40.0% |
| ! | TATGTTTCTGTCCAGTCTGT+TGG | + | chr4.4:30509385-30509404 | MS.gene56530:intron | 40.0% |
| !! | AAAGGCATGGAGTTTTGTGT+GGG | + | chr4.4:30509448-30509467 | MS.gene56530:intron | 40.0% |
| !! | TGTTAAGGGTGCGTTTGTTT+TGG | + | chr4.4:30510793-30510812 | MS.gene56530:intron | 40.0% |
| !! | TTTGTGTGGGTATTGAAGGA+GGG | + | chr4.4:30509461-30509480 | MS.gene56530:intron | 40.0% |
| !!! | CTCGGTGAATTTTGAAACCT+TGG | + | chr4.4:30510686-30510705 | MS.gene56530:intron | 40.0% |
| !!! | GAGTTTTGTGTGGGTATTGA+AGG | + | chr4.4:30509457-30509476 | MS.gene56530:intron | 40.0% |
| !!! | TTTTGTGTGGGTATTGAAGG+AGG | + | chr4.4:30509460-30509479 | MS.gene56530:intron | 40.0% |
| AAGCTCCCCCTAATCGATAT+GGG | + | chr4.4:30511955-30511974 | MS.gene56530:CDS | 45.0% | |
| AATCGATATGGGATAAGGCC+GGG | + | chr4.4:30511966-30511985 | MS.gene56530:CDS | 45.0% | |
| AGATCACAGCTGGTTGAAGA+GGG | + | chr4.4:30511926-30511945 | MS.gene56530:CDS | 45.0% | |
| CATAAGATAGGGAGACGAGA+AGG | - | chr4.4:30511638-30511657 | None:intergenic | 45.0% | |
| CCAATTTACACAGTTGGCCA+AGG | - | chr4.4:30510706-30510725 | None:intergenic | 45.0% | |
| CCCCTAATCGATATGGGATA+AGG | + | chr4.4:30511961-30511980 | MS.gene56530:CDS | 45.0% | |
| CCTTGGCCAACTGTGTAAAT+TGG | + | chr4.4:30510703-30510722 | MS.gene56530:intron | 45.0% | |
| CTTATCCAACTAAGTGGGGT+CGG | - | chr4.4:30510219-30510238 | None:intergenic | 45.0% | |
| GAAAAATCTACCCGGGAACT+GGG | - | chr4.4:30511179-30511198 | None:intergenic | 45.0% | |
| GAAGGCTGCTAAGGAGAATT+AGG | - | chr4.4:30511157-30511176 | None:intergenic | 45.0% | |
| GAGACAAGCTGAAGAGAAAG+AGG | + | chr4.4:30512167-30512186 | MS.gene56530:CDS | 45.0% | |
| GATGCTTTCTTGTCCTCTAG+AGG | - | chr4.4:30510123-30510142 | None:intergenic | 45.0% | |
| TCATCACTTTCCCCCAAGTT+CGG | - | chr4.4:30511876-30511895 | None:intergenic | 45.0% | |
| TCTGTTGGATGCCTTTGTGA+CGG | + | chr4.4:30509400-30509419 | MS.gene56530:intron | 45.0% | |
| ! | ACGAGCAATTTGCTCTCACT+CGG | + | chr4.4:30510668-30510687 | MS.gene56530:intron | 45.0% |
| ! | AGAAGGACAAGCCTTTTGCA+CGG | + | chr4.4:30510406-30510425 | MS.gene56530:CDS | 45.0% |
| ! | GGCCTTATCCCATATCGATT+AGG | - | chr4.4:30511966-30511985 | None:intergenic | 45.0% |
| ! | GTCTCTTGAGAGAATGGGTT+GGG | + | chr4.4:30509423-30509442 | MS.gene56530:intron | 45.0% |
| !! | GAAAGGCATGGAGTTTTGTG+TGG | + | chr4.4:30509447-30509466 | MS.gene56530:intron | 45.0% |
| !! | GCAGAAGGAGAAGGTACTAT+GGG | + | chr4.4:30511705-30511724 | MS.gene56530:CDS | 45.0% |
| !! | TCTCTTGAGAGAATGGGTTG+GGG | + | chr4.4:30509424-30509443 | MS.gene56530:intron | 45.0% |
| !! | TGCAGAAGGAGAAGGTACTA+TGG | + | chr4.4:30511704-30511723 | MS.gene56530:CDS | 45.0% |
| !! | TTGTGTGGGTATTGAAGGAG+GGG | + | chr4.4:30509462-30509481 | MS.gene56530:intron | 45.0% |
| ACATTCCGACCCCACTTAGT+TGG | + | chr4.4:30510211-30510230 | MS.gene56530:intron | 50.0% | |
| CAGATCACAGCTGGTTGAAG+AGG | + | chr4.4:30511925-30511944 | MS.gene56530:CDS | 50.0% | |
| CCGCTCAAAACCTACAAGCA+GGG | - | chr4.4:30512124-30512143 | None:intergenic | 50.0% | |
| CGAAAAATCTACCCGGGAAC+TGG | - | chr4.4:30511180-30511199 | None:intergenic | 50.0% | |
| CGACCCCACTTAGTTGGATA+AGG | + | chr4.4:30510217-30510236 | MS.gene56530:intron | 50.0% | |
| CGCTCAAAACCTACAAGCAG+GGG | - | chr4.4:30512123-30512142 | None:intergenic | 50.0% | |
| CTCTTCAACCAGCTGTGATC+TGG | - | chr4.4:30511927-30511946 | None:intergenic | 50.0% | |
| CTGTTGGATGCCTTTGTGAC+GGG | + | chr4.4:30509401-30509420 | MS.gene56530:intron | 50.0% | |
| GAAGCTCCCCCTAATCGATA+TGG | + | chr4.4:30511954-30511973 | MS.gene56530:CDS | 50.0% | |
| GACGGGTCTCTTGAGAGAAT+GGG | + | chr4.4:30509418-30509437 | MS.gene56530:intron | 50.0% | |
| GACTCAAAAGTGGAAAGCCG+AGG | + | chr4.4:30510359-30510378 | MS.gene56530:CDS | 50.0% | |
| GCAAGGGCTTGACTCAAAAG+TGG | + | chr4.4:30510349-30510368 | MS.gene56530:CDS | 50.0% | |
| GCAGCACTGCGTTTCTTATC+TGG | + | chr4.4:30509711-30509730 | MS.gene56530:CDS | 50.0% | |
| GGTCTCTTGAGAGAATGGGT+TGG | + | chr4.4:30509422-30509441 | MS.gene56530:intron | 50.0% | |
| GTATACCTGGTCCGTGCAAA+AGG | - | chr4.4:30510420-30510439 | None:intergenic | 50.0% | |
| TATTGAAGGAGGGGTAAGGG+AGG | + | chr4.4:30509471-30509490 | MS.gene56530:intron | 50.0% | |
| TCTCAAGAGACCCGTCACAA+AGG | - | chr4.4:30509414-30509433 | None:intergenic | 50.0% | |
| ! | TGACGGGTCTCTTGAGAGAA+TGG | + | chr4.4:30509417-30509436 | MS.gene56530:intron | 50.0% |
| !! | CACAAAGGCATCCAACAGAC+TGG | - | chr4.4:30509399-30509418 | None:intergenic | 50.0% |
| !! | CTCTTGAGAGAATGGGTTGG+GGG | + | chr4.4:30509425-30509444 | MS.gene56530:intron | 50.0% |
| !! | GATGGTGTCGATCGCAGTAA+TGG | + | chr4.4:30511999-30512018 | MS.gene56530:CDS | 50.0% |
| !! | GGGTATTGAAGGAGGGGTAA+GGG | + | chr4.4:30509468-30509487 | MS.gene56530:intron | 50.0% |
| !! | TGGGTATTGAAGGAGGGGTA+AGG | + | chr4.4:30509467-30509486 | MS.gene56530:intron | 50.0% |
| !!! | CCCTGCTTGTAGGTTTTGAG+CGG | + | chr4.4:30512121-30512140 | MS.gene56530:intron | 50.0% |
| !!! | CCTGCTTGTAGGTTTTGAGC+GGG | + | chr4.4:30512122-30512141 | MS.gene56530:intron | 50.0% |
| AAGTTCGGAAGGTCAGGCTC+TGG | - | chr4.4:30511861-30511880 | None:intergenic | 55.0% | |
| AATCTACCCGGGAACTGGGA+AGG | - | chr4.4:30511175-30511194 | None:intergenic | 55.0% | |
| AGAGCCTGACCTTCCGAACT+TGG | + | chr4.4:30511860-30511879 | MS.gene56530:CDS | 55.0% | |
| AGCCTGACCTTCCGAACTTG+GGG | + | chr4.4:30511862-30511881 | MS.gene56530:CDS | 55.0% | |
| AGGACGACGCGTTACCAAAG+AGG | + | chr4.4:30509637-30509656 | MS.gene56530:intron | 55.0% | |
| CACTTTCCCCCAAGTTCGGA+AGG | - | chr4.4:30511872-30511891 | None:intergenic | 55.0% | |
| CCCGCTCAAAACCTACAAGC+AGG | - | chr4.4:30512125-30512144 | None:intergenic | 55.0% | |
| GAGCCTGACCTTCCGAACTT+GGG | + | chr4.4:30511861-30511880 | MS.gene56530:CDS | 55.0% | |
| GCACGGACCAGGTATACAGA+AGG | + | chr4.4:30510423-30510442 | MS.gene56530:intron | 55.0% | |
| GGATGGAGGGCTGACTACAA+CGG | - | chr4.4:30511444-30511463 | None:intergenic | 55.0% | |
| GTTGCACTCTCTGCCCCAAA+TGG | - | chr4.4:30509555-30509574 | None:intergenic | 55.0% | |
| TCAGCTCTTCCCCTGCTTGT+AGG | + | chr4.4:30512111-30512130 | MS.gene56530:intron | 55.0% | |
| TTAGCAGCCTTCCCAGTTCC+CGG | + | chr4.4:30511165-30511184 | MS.gene56530:intron | 55.0% | |
| ! | ACAAGCCTTTTGCACGGACC+AGG | + | chr4.4:30510412-30510431 | MS.gene56530:CDS | 55.0% |
| !! | AATGGGTTGGGGGAAAGGCA+TGG | + | chr4.4:30509435-30509454 | MS.gene56530:intron | 55.0% |
| !! | GAGAGAATGGGTTGGGGGAA+AGG | + | chr4.4:30509430-30509449 | MS.gene56530:intron | 55.0% |
| ACACCATCCCAGTGTCGTCC+CGG | - | chr4.4:30511987-30512006 | None:intergenic | 60.0% | |
| CCACTGATGCTCGGGTCCAT+CGG | - | chr4.4:30509304-30509323 | None:intergenic | 60.0% | |
| GATAAGGCCGGGACGACACT+GGG | + | chr4.4:30511977-30511996 | MS.gene56530:CDS | 60.0% | |
| GCCTGACCTTCCGAACTTGG+GGG | + | chr4.4:30511863-30511882 | MS.gene56530:CDS | 60.0% | |
| GGGAACTGGGAAGGCTGCTA+AGG | - | chr4.4:30511166-30511185 | None:intergenic | 60.0% | |
| TAGCAGCCTTCCCAGTTCCC+GGG | + | chr4.4:30511166-30511185 | MS.gene56530:intron | 60.0% | |
| TCCCCCAAGTTCGGAAGGTC+AGG | - | chr4.4:30511867-30511886 | None:intergenic | 60.0% | |
| GACCCGAGCATCAGTGGGCA+CGG | + | chr4.4:30509307-30509326 | MS.gene56530:CDS | 65.0% | |
| GGATAAGGCCGGGACGACAC+TGG | + | chr4.4:30511976-30511995 | MS.gene56530:CDS | 65.0% | |
| AGGCCGGGACGACACTGGGA+TGG | + | chr4.4:30511981-30512000 | MS.gene56530:CDS | 70.0% | |
| CGCCGTGCCCACTGATGCTC+GGG | - | chr4.4:30509312-30509331 | None:intergenic | 70.0% | |
| GCGCCGTGCCCACTGATGCT+CGG | - | chr4.4:30509313-30509332 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30509304 | 30512199 | 30509304 | ID=MS.gene56530 |
| chr4.4 | mRNA | 30509304 | 30512199 | 30509304 | ID=MS.gene56530.t1;Parent=MS.gene56530 |
| chr4.4 | exon | 30509304 | 30509358 | 30509304 | ID=MS.gene56530.t1.exon1;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30509304 | 30509358 | 30509304 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| chr4.4 | exon | 30509639 | 30509745 | 30509639 | ID=MS.gene56530.t1.exon2;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30509639 | 30509745 | 30509639 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| chr4.4 | exon | 30510330 | 30510433 | 30510330 | ID=MS.gene56530.t1.exon3;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30510330 | 30510433 | 30510330 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| chr4.4 | exon | 30511681 | 30511753 | 30511681 | ID=MS.gene56530.t1.exon4;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30511681 | 30511753 | 30511681 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| chr4.4 | exon | 30511849 | 30512020 | 30511849 | ID=MS.gene56530.t1.exon5;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30511849 | 30512020 | 30511849 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| chr4.4 | exon | 30512133 | 30512199 | 30512133 | ID=MS.gene56530.t1.exon6;Parent=MS.gene56530.t1 |
| chr4.4 | CDS | 30512133 | 30512199 | 30512133 | ID=cds.MS.gene56530.t1;Parent=MS.gene56530.t1 |
| Gene Sequence |
| Protein sequence |
