Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56802.t1 | XP_024636916.1 | 95.3 | 301 | 14 | 0 | 1 | 301 | 85 | 385 | 5.00E-161 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56802.t1 | B1AZ99 | 27.5 | 193 | 122 | 2 | 2 | 193 | 109 | 284 | 1.1e-12 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56802.t1 | A0A072UQ38 | 95.0 | 301 | 14 | 1 | 1 | 301 | 85 | 384 | 2.6e-159 | 570.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052954 | MS.gene56802 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene56802 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene56802 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene56802 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene56802 | 0.804526 | 2.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56802.t1 | MTR_4g094860 | 95.017 | 301 | 14 | 1 | 1 | 301 | 85 | 384 | 0.0 | 600 |
| MS.gene56802.t1 | MTR_4g094860 | 95.017 | 301 | 14 | 1 | 1 | 301 | 12 | 311 | 0.0 | 598 |
| MS.gene56802.t1 | MTR_4g094860 | 93.645 | 299 | 19 | 0 | 1 | 299 | 85 | 383 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56802.t1 | AT5G67170 | 55.806 | 310 | 113 | 6 | 1 | 301 | 1 | 295 | 8.74e-118 | 340 |
| MS.gene56802.t1 | AT5G67170 | 55.663 | 309 | 115 | 5 | 1 | 301 | 81 | 375 | 1.89e-116 | 340 |
| MS.gene56802.t1 | AT5G67170 | 55.663 | 309 | 115 | 5 | 1 | 301 | 81 | 375 | 1.89e-116 | 340 |
Find 62 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAGGTCAATTGTTATTA+AGG | 0.190097 | 8.2:-25419357 | MS.gene56802:intron |
| GGCTGGACATATGGAATTGC+AGG | 0.289386 | 8.2:-25420909 | MS.gene56802:CDS |
| TGGGACTTCATCTTCAATAA+AGG | 0.320750 | 8.2:+25420973 | None:intergenic |
| CACAGAAGATTCCTAGAAAC+AGG | 0.321311 | 8.2:-25418422 | MS.gene56802:intron |
| TTATAATAGTGTGCGGTTAA+AGG | 0.329056 | 8.2:-25419399 | MS.gene56802:CDS |
| CGTCACATCAACCGAAAGAT+AGG | 0.331335 | 8.2:-25419216 | MS.gene56802:CDS |
| TTAATAACAATTGACCTTGC+AGG | 0.361790 | 8.2:+25419359 | None:intergenic |
| TTCTGATTGCCTTCCTAGTC+AGG | 0.376724 | 8.2:-25418910 | MS.gene56802:CDS |
| CACGGGCAGACCCTGTTTCT+AGG | 0.382042 | 8.2:+25418411 | None:intergenic |
| GCTTGTTGTGGAACTTCGTC+GGG | 0.385216 | 8.2:-25418366 | MS.gene56802:CDS |
| TGACTCAGTGACACGTGATA+TGG | 0.389388 | 8.2:-25418040 | MS.gene56802:CDS |
| CCATGGAAAATGATGGTACT+TGG | 0.393470 | 8.2:-25420931 | MS.gene56802:CDS |
| TGGTACTTGGGCTGGACATA+TGG | 0.426343 | 8.2:-25420918 | MS.gene56802:CDS |
| TTTCTAGGTCTTATCATGAT+GGG | 0.433888 | 8.2:-25419427 | MS.gene56802:intron |
| GGGACTTCATCTTCAATAAA+GGG | 0.442480 | 8.2:+25420974 | None:intergenic |
| TCCTTCTGGAGTCAGTGGCT+TGG | 0.449320 | 8.2:+25418118 | None:intergenic |
| CTATCTTTCGGTTGATGTGA+CGG | 0.468316 | 8.2:+25419217 | None:intergenic |
| CTTGTTGCAGATTCTAGAGC+AGG | 0.469779 | 8.2:-25419003 | MS.gene56802:intron |
| TCGGTAAAGGTGGTTATGGC+TGG | 0.470813 | 8.2:-25419145 | MS.gene56802:CDS |
| CCTAGTCAGGCTAGTACTAC+TGG | 0.471988 | 8.2:-25418897 | MS.gene56802:intron |
| TTCTTACTAGCTTCAGCATA+CGG | 0.478063 | 8.2:+25419184 | None:intergenic |
| CGGGTCGGTAAAGGTGGTTA+TGG | 0.480387 | 8.2:-25419149 | MS.gene56802:CDS |
| AAGGTGGTTATGGCTGGAAG+TGG | 0.486837 | 8.2:-25419139 | MS.gene56802:CDS |
| GAAAATGATGGTACTTGGGC+TGG | 0.488681 | 8.2:-25420926 | MS.gene56802:CDS |
| AGCTTGTTGTGGAACTTCGT+CGG | 0.499481 | 8.2:-25418367 | MS.gene56802:CDS |
| CTATGCAGAACATGTTTCCT+CGG | 0.502760 | 8.2:-25420522 | MS.gene56802:intron |
| TTTGTTCCTTCTGGAGTCAG+TGG | 0.509559 | 8.2:+25418113 | None:intergenic |
| AAAGGGATTTCTGCAAAAGC+TGG | 0.509942 | 8.2:-25418078 | MS.gene56802:CDS |
| CGATGATTCTCAAGTTCACA+TGG | 0.510687 | 8.2:-25420482 | MS.gene56802:CDS |
| TTCTAGGTCTTATCATGATG+GGG | 0.513921 | 8.2:-25419426 | MS.gene56802:intron |
| CAGATTCTAGAGCAGGTGAA+TGG | 0.521237 | 8.2:-25418996 | MS.gene56802:CDS |
| GTCTGGCAATAATCATCGAA+TGG | 0.537170 | 8.2:+25420953 | None:intergenic |
| TAGTAACATATGCATCCATC+GGG | 0.537648 | 8.2:-25420867 | MS.gene56802:intron |
| TCTGGCAATAATCATCGAAT+GGG | 0.540543 | 8.2:+25420954 | None:intergenic |
| GCACAAAGAAAACATGGTAG+AGG | 0.542120 | 8.2:-25418689 | MS.gene56802:CDS |
| AAGAAATACAAAGCTTGTTG+TGG | 0.546374 | 8.2:-25418378 | MS.gene56802:CDS |
| CATAACCACCTTTACCGACC+CGG | 0.556866 | 8.2:+25419150 | None:intergenic |
| GACTCAGTGACACGTGATAT+GGG | 0.557217 | 8.2:-25418039 | MS.gene56802:CDS |
| CCAGTAGTACTAGCCTGACT+AGG | 0.558176 | 8.2:+25418897 | None:intergenic |
| TCAGCCCGGGTCGGTAAAGG+TGG | 0.561216 | 8.2:-25419155 | MS.gene56802:CDS |
| ATAACCACCTTTACCGACCC+GGG | 0.575556 | 8.2:+25419151 | None:intergenic |
| TGCCAGACCATGGAAAATGA+TGG | 0.577620 | 8.2:-25420938 | MS.gene56802:CDS |
| CGATGATTATTGCCAGACCA+TGG | 0.578237 | 8.2:-25420948 | MS.gene56802:CDS |
| ATAGTAACATATGCATCCAT+CGG | 0.583124 | 8.2:-25420868 | MS.gene56802:CDS |
| ATGTGACGGTGCTGAAAGAT+CGG | 0.584003 | 8.2:+25419231 | None:intergenic |
| TTAAAGGATGATCCTTGTGA+TGG | 0.588931 | 8.2:-25419383 | MS.gene56802:CDS |
| TAGTACTAGCCTGACTAGGA+AGG | 0.598351 | 8.2:+25418901 | None:intergenic |
| ATGGTAGAGGAGAGCAGTCA+CGG | 0.607473 | 8.2:-25418676 | MS.gene56802:CDS |
| ACCAAGCCACTGACTCCAGA+AGG | 0.611764 | 8.2:-25418119 | MS.gene56802:CDS |
| GACCTTGCAGGTCCATCACA+AGG | 0.613567 | 8.2:+25419371 | None:intergenic |
| GTCACATCAACCGAAAGATA+GGG | 0.613702 | 8.2:-25419215 | MS.gene56802:CDS |
| CACATCGCAACAAAATGACA+AGG | 0.622735 | 8.2:-25418605 | MS.gene56802:intron |
| CATGGAAAATGATGGTACTT+GGG | 0.629227 | 8.2:-25420930 | MS.gene56802:CDS |
| TGAGAAGCACAAAGAAAACA+TGG | 0.640546 | 8.2:-25418695 | MS.gene56802:CDS |
| TGCAGAACATGTTTCCTCGG+TGG | 0.667115 | 8.2:-25420519 | MS.gene56802:intron |
| AGAAACAGGGTCTGCCCGTG+CGG | 0.673016 | 8.2:-25418408 | MS.gene56802:CDS |
| GAGTTTCTAATAGCAGAACA+AGG | 0.677087 | 8.2:-25418954 | MS.gene56802:CDS |
| GGGAGCATTATAATAGTGTG+CGG | 0.690633 | 8.2:-25419406 | MS.gene56802:CDS |
| CTTGTTGTGGAACTTCGTCG+GGG | 0.699274 | 8.2:-25418365 | MS.gene56802:CDS |
| ACAGAAGATTCCTAGAAACA+GGG | 0.710528 | 8.2:-25418421 | MS.gene56802:intron |
| ATCCTTGTGATGGACCTGCA+AGG | 0.717426 | 8.2:-25419373 | MS.gene56802:CDS |
| AAATTTCTTATATACCACCG+AGG | 0.747420 | 8.2:+25420505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAACAAAATTTA+TGG | + | chr8.2:25418325-25418344 | None:intergenic | 10.0% |
| !! | AATAAATAAGGTTATATTAG+TGG | - | chr8.2:25419290-25419309 | MS.gene56802:intron | 15.0% |
| !! | TGTTTATGAATAATAATGAA+TGG | + | chr8.2:25418993-25419012 | None:intergenic | 15.0% |
| !!! | ACAATAATTAAATTTTGTCT+AGG | - | chr8.2:25418895-25418914 | MS.gene56802:intron | 15.0% |
| !!! | TTAACATTAATTTGAGAATT+AGG | + | chr8.2:25419694-25419713 | None:intergenic | 15.0% |
| !! | AATAATAATGAATGTTGCAT+TGG | - | chr8.2:25419315-25419334 | MS.gene56802:intron | 20.0% |
| !! | GTGCATATATATAACATTTA+AGG | - | chr8.2:25419464-25419483 | MS.gene56802:intron | 20.0% |
| !! | TGAATAGTTGAAATTAAAAC+AGG | + | chr8.2:25420722-25420741 | None:intergenic | 20.0% |
| !! | TGTTATATATATGCACAAAT+AGG | + | chr8.2:25419460-25419479 | None:intergenic | 20.0% |
| !! | TTAGCTGATATAATTTAGTT+AGG | - | chr8.2:25418927-25418946 | MS.gene56802:CDS | 20.0% |
| !! | TTCAAAAACTAGAATTAATC+AGG | + | chr8.2:25419746-25419765 | None:intergenic | 20.0% |
| !!! | ATACGACAATTAATTTGAAA+CGG | + | chr8.2:25419149-25419168 | None:intergenic | 20.0% |
| !!! | ATCAATTTTGATGCTTTATT+CGG | - | chr8.2:25419546-25419565 | MS.gene56802:intron | 20.0% |
| !!! | ATTTAGTTAGGTTATTTTGA+CGG | - | chr8.2:25418939-25418958 | MS.gene56802:CDS | 20.0% |
| !!! | GATATTATCATTAGTTTTTG+TGG | + | chr8.2:25420382-25420401 | None:intergenic | 20.0% |
| !!! | GATTAATTCTAGTTTTTGAA+AGG | - | chr8.2:25419746-25419765 | MS.gene56802:intron | 20.0% |
| !!! | TCAAATTAATTGTCGTATTT+TGG | - | chr8.2:25419151-25419170 | MS.gene56802:CDS | 20.0% |
| !!! | TCCAAAATAAATATTTTCAC+AGG | - | chr8.2:25420488-25420507 | MS.gene56802:CDS | 20.0% |
| ! | AACAAAAAAGATACGAAGAA+AGG | - | chr8.2:25420910-25420929 | MS.gene56802:CDS | 25.0% |
| ! | AAGTGACAATTATTATGAGA+CGG | - | chr8.2:25419381-25419400 | MS.gene56802:CDS | 25.0% |
| ! | ACAAAAAAGATACGAAGAAA+GGG | - | chr8.2:25420911-25420930 | MS.gene56802:CDS | 25.0% |
| ! | ACCCTATTAATTATAGTTAG+CGG | - | chr8.2:25419244-25419263 | MS.gene56802:intron | 25.0% |
| ! | CAGAAACAAATTACCAATTA+TGG | + | chr8.2:25420180-25420199 | None:intergenic | 25.0% |
| ! | GGAATGAACTTCAATAAATA+AGG | - | chr8.2:25419278-25419297 | MS.gene56802:intron | 25.0% |
| ! | TCCGCTAACTATAATTAATA+GGG | + | chr8.2:25419248-25419267 | None:intergenic | 25.0% |
| ! | TCTAATATTATGATCTCCTT+TGG | - | chr8.2:25420517-25420536 | MS.gene56802:CDS | 25.0% |
| !! | ATGTTGTTTATTCTGATATG+AGG | - | chr8.2:25418864-25418883 | MS.gene56802:intron | 25.0% |
| !! | ATTGTTATTAAGGTTCTTGT+TGG | - | chr8.2:25419659-25419678 | MS.gene56802:intron | 25.0% |
| !! | GCCTGTGAAAATATTTATTT+TGG | + | chr8.2:25420492-25420511 | None:intergenic | 25.0% |
| !! | GTAACTATTAGTTTCTTATC+AGG | - | chr8.2:25419100-25419119 | MS.gene56802:intron | 25.0% |
| !! | TAGGTCTTCATTTTATGATT+TGG | - | chr8.2:25418762-25418781 | MS.gene56802:intron | 25.0% |
| !!! | TCAATTTTGATGCTTTATTC+GGG | - | chr8.2:25419547-25419566 | MS.gene56802:intron | 25.0% |
| !!! | TGTAGTGTAGTTGATTTTAA+TGG | - | chr8.2:25419196-25419215 | MS.gene56802:CDS | 25.0% |
| AAATTTCTTATATACCACCG+AGG | + | chr8.2:25418504-25418523 | None:intergenic | 30.0% | |
| AACAAAACCTAAAATCGAAG+GGG | + | chr8.2:25420436-25420455 | None:intergenic | 30.0% | |
| AACAATATGATCTGAATCCT+AGG | + | chr8.2:25419038-25419057 | None:intergenic | 30.0% | |
| ACAACAAACAAAAATGCCAA+AGG | + | chr8.2:25420536-25420555 | None:intergenic | 30.0% | |
| AGAAAATAATTGTGACCACT+CGG | + | chr8.2:25420756-25420775 | None:intergenic | 30.0% | |
| AGCATCAAAATTGATATGCA+AGG | + | chr8.2:25419541-25419560 | None:intergenic | 30.0% | |
| ATAGTAACATATGCATCCAT+CGG | - | chr8.2:25418138-25418157 | MS.gene56802:intron | 30.0% | |
| ATGTGAAAACAGAGAAAAAG+TGG | - | chr8.2:25419890-25419909 | MS.gene56802:intron | 30.0% | |
| CAACAAAACCTAAAATCGAA+GGG | + | chr8.2:25420437-25420456 | None:intergenic | 30.0% | |
| CAACAAAGTTAGAGAACATT+TGG | + | chr8.2:25420824-25420843 | None:intergenic | 30.0% | |
| CTACTTAAATATCTCCACTA+TGG | + | chr8.2:25418287-25418306 | None:intergenic | 30.0% | |
| CTATGTTAATGACAATTCCT+AGG | - | chr8.2:25419018-25419037 | MS.gene56802:intron | 30.0% | |
| CTCCGCTAACTATAATTAAT+AGG | + | chr8.2:25419249-25419268 | None:intergenic | 30.0% | |
| GAGGAATTAAACATGTTCAA+GGG | + | chr8.2:25418172-25418191 | None:intergenic | 30.0% | |
| GCCTAAAAAAATAGACAACA+CGG | + | chr8.2:25418655-25418674 | None:intergenic | 30.0% | |
| GTGAAATTTCACACAATTGA+AGG | + | chr8.2:25418633-25418652 | None:intergenic | 30.0% | |
| TCAAGACAATTATTCTGAAC+TGG | + | chr8.2:25419518-25419537 | None:intergenic | 30.0% | |
| TTAATAACAATTGACCTTGC+AGG | + | chr8.2:25419650-25419669 | None:intergenic | 30.0% | |
| TTATAATAGTGTGCGGTTAA+AGG | - | chr8.2:25419607-25419626 | MS.gene56802:intron | 30.0% | |
| ! | AATACTGCATTTGAAAGCAT+AGG | + | chr8.2:25418791-25418810 | None:intergenic | 30.0% |
| ! | AGTGGTCACAATTATTTTCT+AGG | - | chr8.2:25420756-25420775 | MS.gene56802:intron | 30.0% |
| ! | CTAAGTATGTTACTTACCTA+CGG | - | chr8.2:25418597-25418616 | MS.gene56802:intron | 30.0% |
| ! | GACAATTAATTTGAAACGGA+GGG | + | chr8.2:25419145-25419164 | None:intergenic | 30.0% |
| ! | GTGGTCACAATTATTTTCTA+GGG | - | chr8.2:25420757-25420776 | MS.gene56802:intron | 30.0% |
| ! | TGCAAGGTCAATTGTTATTA+AGG | - | chr8.2:25419649-25419668 | MS.gene56802:intron | 30.0% |
| ! | TTTCTAGGTCTTATCATGAT+GGG | - | chr8.2:25419579-25419598 | MS.gene56802:intron | 30.0% |
| !! | AAGAAATACAAAGCTTGTTG+TGG | - | chr8.2:25420628-25420647 | MS.gene56802:intron | 30.0% |
| !! | TTTTCTAGGTCTTATCATGA+TGG | - | chr8.2:25419578-25419597 | MS.gene56802:intron | 30.0% |
| !!! | ACCGTGTTGTCTATTTTTTT+AGG | - | chr8.2:25418651-25418670 | MS.gene56802:CDS | 30.0% |
| !!! | TATTTCTTTTTTGAACCGCA+CGG | + | chr8.2:25420616-25420635 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCCCTTCGATTTT+AGG | - | chr8.2:25420426-25420445 | MS.gene56802:intron | 30.0% |
| AAACAGAGAAAAAGTGGAAC+AGG | - | chr8.2:25419896-25419915 | MS.gene56802:intron | 35.0% | |
| AACTCTTATCTCGAATTCCT+GGG | - | chr8.2:25420258-25420277 | MS.gene56802:intron | 35.0% | |
| ACAGAAGATTCCTAGAAACA+GGG | - | chr8.2:25420585-25420604 | MS.gene56802:intron | 35.0% | |
| ACTTACACCAGAATGAAGAT+TGG | - | chr8.2:25418255-25418274 | MS.gene56802:intron | 35.0% | |
| AGATGTGACATGAGAATACA+AGG | + | chr8.2:25418197-25418216 | None:intergenic | 35.0% | |
| ATCTTCATTCTGGTGTAAGT+AGG | + | chr8.2:25418255-25418274 | None:intergenic | 35.0% | |
| ATGTGACATGAGAATACAAG+GGG | + | chr8.2:25418195-25418214 | None:intergenic | 35.0% | |
| ATTGAAATTCACGCGCTTAT+TGG | - | chr8.2:25418456-25418475 | MS.gene56802:intron | 35.0% | |
| CATGGAAAATGATGGTACTT+GGG | - | chr8.2:25418076-25418095 | MS.gene56802:CDS | 35.0% | |
| CCAACAAAACCTAAAATCGA+AGG | + | chr8.2:25420438-25420457 | None:intergenic | 35.0% | |
| CGTAGGTAAGTAACATACTT+AGG | + | chr8.2:25418599-25418618 | None:intergenic | 35.0% | |
| CTTACACCAGAATGAAGATT+GGG | - | chr8.2:25418256-25418275 | MS.gene56802:intron | 35.0% | |
| CTTTCTGAACTGTCCATAAT+TGG | - | chr8.2:25420164-25420183 | MS.gene56802:intron | 35.0% | |
| GAGTTTCTAATAGCAGAACA+AGG | - | chr8.2:25420052-25420071 | MS.gene56802:intron | 35.0% | |
| GATGTGACATGAGAATACAA+GGG | + | chr8.2:25418196-25418215 | None:intergenic | 35.0% | |
| GGAGGAATTAAACATGTTCA+AGG | + | chr8.2:25418173-25418192 | None:intergenic | 35.0% | |
| GGGACTTCATCTTCAATAAA+GGG | + | chr8.2:25418035-25418054 | None:intergenic | 35.0% | |
| GTTTATTCTGATATGAGGTG+TGG | - | chr8.2:25418869-25418888 | MS.gene56802:intron | 35.0% | |
| TAACTCTTATCTCGAATTCC+TGG | - | chr8.2:25420257-25420276 | MS.gene56802:intron | 35.0% | |
| TAGTAACATATGCATCCATC+GGG | - | chr8.2:25418139-25418158 | MS.gene56802:intron | 35.0% | |
| TCTGGCAATAATCATCGAAT+GGG | + | chr8.2:25418055-25418074 | None:intergenic | 35.0% | |
| TGACAATTATTATGAGACGG+AGG | - | chr8.2:25419384-25419403 | MS.gene56802:CDS | 35.0% | |
| TGGGACTTCATCTTCAATAA+AGG | + | chr8.2:25418036-25418055 | None:intergenic | 35.0% | |
| TGTTCATATCTTCAACTTGC+TGG | - | chr8.2:25418732-25418751 | MS.gene56802:intron | 35.0% | |
| TTAAAGGATGATCCTTGTGA+TGG | - | chr8.2:25419623-25419642 | MS.gene56802:intron | 35.0% | |
| TTACACCAGAATGAAGATTG+GGG | - | chr8.2:25418257-25418276 | MS.gene56802:intron | 35.0% | |
| TTCACACAATTGAAGGTCTT+AGG | + | chr8.2:25418626-25418645 | None:intergenic | 35.0% | |
| ! | AGTAAGAAAACTTTTCAGCC+CGG | - | chr8.2:25419837-25419856 | MS.gene56802:intron | 35.0% |
| ! | CGACAATTAATTTGAAACGG+AGG | + | chr8.2:25419146-25419165 | None:intergenic | 35.0% |
| ! | GTTGGTGTTTAGTTTCCTTT+GGG | - | chr8.2:25420453-25420472 | MS.gene56802:intron | 35.0% |
| ! | TGAGAAGCACAAAGAAAACA+TGG | - | chr8.2:25420311-25420330 | MS.gene56802:intron | 35.0% |
| ! | TGTTGGTGTTTAGTTTCCTT+TGG | - | chr8.2:25420452-25420471 | MS.gene56802:intron | 35.0% |
| ! | TGTTTAGTTTCCTTTGGGTT+GGG | - | chr8.2:25420458-25420477 | MS.gene56802:intron | 35.0% |
| ! | TTCTAGGTCTTATCATGATG+GGG | - | chr8.2:25419580-25419599 | MS.gene56802:intron | 35.0% |
| ! | TTCTTACTAGCTTCAGCATA+CGG | + | chr8.2:25419825-25419844 | None:intergenic | 35.0% |
| ! | TTTGATGCTTTATTCGGGTA+TGG | - | chr8.2:25419552-25419571 | MS.gene56802:intron | 35.0% |
| !! | CTAGAAATTTGAGAAGCACT+TGG | + | chr8.2:25418403-25418422 | None:intergenic | 35.0% |
| !!! | ATTTCTTTTTTGAACCGCAC+GGG | + | chr8.2:25420615-25420634 | None:intergenic | 35.0% |
| !!! | CCTTCGATTTTAGGTTTTGT+TGG | - | chr8.2:25420435-25420454 | MS.gene56802:intron | 35.0% |
| !!! | CGTATCTTTTTTGTTCCTTC+TGG | + | chr8.2:25420905-25420924 | None:intergenic | 35.0% |
| AAACTACTTGAGCCACATGT+TGG | + | chr8.2:25419080-25419099 | None:intergenic | 40.0% | |
| AAAGGGATTTCTGCAAAAGC+TGG | - | chr8.2:25420928-25420947 | MS.gene56802:CDS | 40.0% | |
| AGACGGAGGAAGATCATTTA+AGG | - | chr8.2:25419398-25419417 | MS.gene56802:CDS | 40.0% | |
| CACAGAAGATTCCTAGAAAC+AGG | - | chr8.2:25420584-25420603 | MS.gene56802:intron | 40.0% | |
| CACATCGCAACAAAATGACA+AGG | - | chr8.2:25420401-25420420 | MS.gene56802:intron | 40.0% | |
| CCATGGAAAATGATGGTACT+TGG | - | chr8.2:25418075-25418094 | MS.gene56802:CDS | 40.0% | |
| CGATGATTCTCAAGTTCACA+TGG | - | chr8.2:25418524-25418543 | MS.gene56802:intron | 40.0% | |
| CTATGCAGAACATGTTTCCT+CGG | - | chr8.2:25418484-25418503 | MS.gene56802:intron | 40.0% | |
| CTTCAGATCTTACCAACATG+TGG | - | chr8.2:25419065-25419084 | MS.gene56802:intron | 40.0% | |
| GACGGAGGAAGATCATTTAA+GGG | - | chr8.2:25419399-25419418 | MS.gene56802:CDS | 40.0% | |
| GACTCCACAGTACTTACAAA+TGG | + | chr8.2:25418551-25418570 | None:intergenic | 40.0% | |
| GAGGAAGATCATTTAAGGGA+TGG | - | chr8.2:25419403-25419422 | MS.gene56802:CDS | 40.0% | |
| GCACAAAGAAAACATGGTAG+AGG | - | chr8.2:25420317-25420336 | MS.gene56802:intron | 40.0% | |
| GTCACATCAACCGAAAGATA+GGG | - | chr8.2:25419791-25419810 | MS.gene56802:intron | 40.0% | |
| GTCTGGCAATAATCATCGAA+TGG | + | chr8.2:25418056-25418075 | None:intergenic | 40.0% | |
| TAGTACTCTCTGCGATTCTA+TGG | + | chr8.2:25418832-25418851 | None:intergenic | 40.0% | |
| TAGTTAGCGGAGTAGTTAAG+TGG | - | chr8.2:25419257-25419276 | MS.gene56802:intron | 40.0% | |
| TGTGACATGAGAATACAAGG+GGG | + | chr8.2:25418194-25418213 | None:intergenic | 40.0% | |
| TTGAAACGGAGGGAGTAAAA+TGG | + | chr8.2:25419135-25419154 | None:intergenic | 40.0% | |
| ! | AGAAGCACACAAACAGAAAG+AGG | + | chr8.2:25419939-25419958 | None:intergenic | 40.0% |
| ! | CCAAGTACCATCATTTTCCA+TGG | + | chr8.2:25418078-25418097 | None:intergenic | 40.0% |
| ! | CTATCTTTCGGTTGATGTGA+CGG | + | chr8.2:25419792-25419811 | None:intergenic | 40.0% |
| ! | GTAAGAAAACTTTTCAGCCC+GGG | - | chr8.2:25419838-25419857 | MS.gene56802:intron | 40.0% |
| ! | GTGTTTAGTTTCCTTTGGGT+TGG | - | chr8.2:25420457-25420476 | MS.gene56802:intron | 40.0% |
| ! | TACCATCATTTTCCATGGTC+TGG | + | chr8.2:25418073-25418092 | None:intergenic | 40.0% |
| ! | TGGTCCATTTGTAAGTACTG+TGG | - | chr8.2:25418544-25418563 | MS.gene56802:intron | 40.0% |
| ! | TTCGGGTATGGTGTTTTTCT+AGG | - | chr8.2:25419564-25419583 | MS.gene56802:intron | 40.0% |
| !! | CTGTTTCTAGGAATCTTCTG+TGG | + | chr8.2:25420586-25420605 | None:intergenic | 40.0% |
| !! | GGGAGCATTATAATAGTGTG+CGG | - | chr8.2:25419600-25419619 | MS.gene56802:intron | 40.0% |
| !! | GGTTTTCTAGCCCTATCTTT+CGG | + | chr8.2:25419804-25419823 | None:intergenic | 40.0% |
| !! | GTTTAGTTTCCTTTGGGTTG+GGG | - | chr8.2:25420459-25420478 | MS.gene56802:intron | 40.0% |
| AAGATTGGGGTGTACCATAG+TGG | - | chr8.2:25418270-25418289 | MS.gene56802:intron | 45.0% | |
| CGAGGAAACATGTTCTGCAT+AGG | + | chr8.2:25418486-25418505 | None:intergenic | 45.0% | |
| CGATGATTATTGCCAGACCA+TGG | - | chr8.2:25418058-25418077 | MS.gene56802:CDS | 45.0% | |
| CGTCACATCAACCGAAAGAT+AGG | - | chr8.2:25419790-25419809 | MS.gene56802:intron | 45.0% | |
| CTGTGGTTAATCCCGATAGA+AGG | + | chr8.2:25420569-25420588 | None:intergenic | 45.0% | |
| GAAAATGATGGTACTTGGGC+TGG | - | chr8.2:25418080-25418099 | MS.gene56802:CDS | 45.0% | |
| GACTCAGTGACACGTGATAT+GGG | - | chr8.2:25420967-25420986 | MS.gene56802:CDS | 45.0% | |
| GTACACCCCAATCTTCATTC+TGG | + | chr8.2:25418265-25418284 | None:intergenic | 45.0% | |
| GTTAATCCCGATAGAAGGAG+CGG | + | chr8.2:25420564-25420583 | None:intergenic | 45.0% | |
| TGAAGGTCTTAGGATACCGT+AGG | + | chr8.2:25418616-25418635 | None:intergenic | 45.0% | |
| TGACTCAGTGACACGTGATA+TGG | - | chr8.2:25420966-25420985 | MS.gene56802:CDS | 45.0% | |
| TGCCAGACCATGGAAAATGA+TGG | - | chr8.2:25418068-25418087 | MS.gene56802:CDS | 45.0% | |
| TTCAGATAATGTCTGCCGAG+TGG | - | chr8.2:25420738-25420757 | MS.gene56802:intron | 45.0% | |
| TTCTGATTGCCTTCCTAGTC+AGG | - | chr8.2:25420096-25420115 | MS.gene56802:intron | 45.0% | |
| ! | ATGTGACGGTGCTGAAAGAT+CGG | + | chr8.2:25419778-25419797 | None:intergenic | 45.0% |
| ! | TAGTACTAGCCTGACTAGGA+AGG | + | chr8.2:25420108-25420127 | None:intergenic | 45.0% |
| !! | AGCTTGTTGTGGAACTTCGT+CGG | - | chr8.2:25420639-25420658 | MS.gene56802:intron | 45.0% |
| !! | CAGATTCTAGAGCAGGTGAA+TGG | - | chr8.2:25420010-25420029 | MS.gene56802:intron | 45.0% |
| !! | CTGCTCTAGAATCTGCAACA+AGG | + | chr8.2:25420005-25420024 | None:intergenic | 45.0% |
| !! | CTTGTTGCAGATTCTAGAGC+AGG | - | chr8.2:25420003-25420022 | MS.gene56802:intron | 45.0% |
| !! | TCAACTTGCTGGAAGACTCT+AGG | - | chr8.2:25418743-25418762 | MS.gene56802:intron | 45.0% |
| !! | TTTGTTCCTTCTGGAGTCAG+TGG | + | chr8.2:25420896-25420915 | None:intergenic | 45.0% |
| AAGGTGGTTATGGCTGGAAG+TGG | - | chr8.2:25419867-25419886 | MS.gene56802:intron | 50.0% | |
| ATAACCACCTTTACCGACCC+GGG | + | chr8.2:25419858-25419877 | None:intergenic | 50.0% | |
| ATGGTAGAGGAGAGCAGTCA+CGG | - | chr8.2:25420330-25420349 | MS.gene56802:intron | 50.0% | |
| CATAACCACCTTTACCGACC+CGG | + | chr8.2:25419859-25419878 | None:intergenic | 50.0% | |
| CCTAGTCAGGCTAGTACTAC+TGG | - | chr8.2:25420109-25420128 | MS.gene56802:intron | 50.0% | |
| CTCGAATTCCTGGGATCTTC+AGG | - | chr8.2:25420267-25420286 | MS.gene56802:intron | 50.0% | |
| GACATGAGAATACAAGGGGG+AGG | + | chr8.2:25418191-25418210 | None:intergenic | 50.0% | |
| GGCTGGACATATGGAATTGC+AGG | - | chr8.2:25418097-25418116 | MS.gene56802:CDS | 50.0% | |
| GTTCTTGCCGCTCCTTCTAT+CGG | - | chr8.2:25420554-25420573 | MS.gene56802:intron | 50.0% | |
| TCGGTAAAGGTGGTTATGGC+TGG | - | chr8.2:25419861-25419880 | MS.gene56802:intron | 50.0% | |
| TGCAGAACATGTTTCCTCGG+TGG | - | chr8.2:25418487-25418506 | MS.gene56802:intron | 50.0% | |
| TTCTTGCCGCTCCTTCTATC+GGG | - | chr8.2:25420555-25420574 | MS.gene56802:intron | 50.0% | |
| ! | CCAGTAGTACTAGCCTGACT+AGG | + | chr8.2:25420112-25420131 | None:intergenic | 50.0% |
| ! | CTTGTTGTGGAACTTCGTCG+GGG | - | chr8.2:25420641-25420660 | MS.gene56802:intron | 50.0% |
| ! | GAAAACTTTTCAGCCCGGGT+CGG | - | chr8.2:25419842-25419861 | MS.gene56802:intron | 50.0% |
| ! | TGGTACTTGGGCTGGACATA+TGG | - | chr8.2:25418088-25418107 | MS.gene56802:CDS | 50.0% |
| !! | ATCCTTGTGATGGACCTGCA+AGG | - | chr8.2:25419633-25419652 | MS.gene56802:intron | 50.0% |
| !! | GCTTGTTGTGGAACTTCGTC+GGG | - | chr8.2:25420640-25420659 | MS.gene56802:intron | 50.0% |
| CATCGCAACCTGAAGATCCC+AGG | + | chr8.2:25420278-25420297 | None:intergenic | 55.0% | |
| CGGGTCGGTAAAGGTGGTTA+TGG | - | chr8.2:25419857-25419876 | MS.gene56802:intron | 55.0% | |
| GACCTTGCAGGTCCATCACA+AGG | + | chr8.2:25419638-25419657 | None:intergenic | 55.0% | |
| GGATCACTTCCCCAACCCAA+AGG | + | chr8.2:25420471-25420490 | None:intergenic | 55.0% | |
| TTCAAGGGCTACTCACCCGA+TGG | + | chr8.2:25418157-25418176 | None:intergenic | 55.0% | |
| ! | TTTTCAGCCCGGGTCGGTAA+AGG | - | chr8.2:25419848-25419867 | MS.gene56802:intron | 55.0% |
| !! | ACCAAGCCACTGACTCCAGA+AGG | - | chr8.2:25420887-25420906 | MS.gene56802:CDS | 55.0% |
| !! | TCCTTCTGGAGTCAGTGGCT+TGG | + | chr8.2:25420891-25420910 | None:intergenic | 55.0% |
| AGAAACAGGGTCTGCCCGTG+CGG | - | chr8.2:25420598-25420617 | MS.gene56802:intron | 60.0% | |
| ! | CACGGGCAGACCCTGTTTCT+AGG | + | chr8.2:25420598-25420617 | None:intergenic | 60.0% |
| TCAGCCCGGGTCGGTAAAGG+TGG | - | chr8.2:25419851-25419870 | MS.gene56802:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 25418023 | 25421005 | 25418023 | ID=MS.gene56802 |
| chr8.2 | mRNA | 25418023 | 25421005 | 25418023 | ID=MS.gene56802.t1;Parent=MS.gene56802 |
| chr8.2 | exon | 25420868 | 25421005 | 25420868 | ID=MS.gene56802.t1.exon1;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25420868 | 25421005 | 25420868 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25420475 | 25420536 | 25420475 | ID=MS.gene56802.t1.exon2;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25420475 | 25420536 | 25420475 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25419358 | 25419442 | 25419358 | ID=MS.gene56802.t1.exon3;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25419358 | 25419442 | 25419358 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25419111 | 25419260 | 25419111 | ID=MS.gene56802.t1.exon4;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25419111 | 25419260 | 25419111 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25418898 | 25419015 | 25418898 | ID=MS.gene56802.t1.exon5;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25418898 | 25419015 | 25418898 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25418606 | 25418739 | 25418606 | ID=MS.gene56802.t1.exon6;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25418606 | 25418739 | 25418606 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25418342 | 25418439 | 25418342 | ID=MS.gene56802.t1.exon7;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25418342 | 25418439 | 25418342 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| chr8.2 | exon | 25418023 | 25418143 | 25418023 | ID=MS.gene56802.t1.exon8;Parent=MS.gene56802.t1 |
| chr8.2 | CDS | 25418023 | 25418143 | 25418023 | ID=cds.MS.gene56802.t1;Parent=MS.gene56802.t1 |
| Gene Sequence |
| Protein sequence |
