AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052954


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052954.t1 MTR_4g012850 98.026 304 6 0 1 304 1 304 0.0 615
MS.gene052954.t1 MTR_2g102010 61.409 298 111 3 1 295 1 297 1.70e-125 360
MS.gene052954.t1 MTR_8g066975 36.207 290 167 6 14 288 6 292 3.69e-47 160
MS.gene052954.t1 MTR_5g030530 33.333 294 170 8 14 288 6 292 9.61e-41 144
MS.gene052954.t1 MTR_5g030530 30.198 202 117 9 107 292 6 199 1.04e-11 64.7
MS.gene052954.t1 MTR_4g088545 27.090 299 202 5 8 292 4 300 4.49e-31 118
MS.gene052954.t1 MTR_8g096050 27.798 277 191 5 14 286 225 496 4.40e-27 110
MS.gene052954.t1 MTR_8g096050 30.102 196 115 8 11 194 317 502 3.45e-13 70.1
MS.gene052954.t1 MTR_7g084400 26.950 282 184 5 14 286 211 479 2.33e-26 108
MS.gene052954.t1 MTR_3g098460 25.784 287 204 4 5 286 192 474 4.66e-26 107
MS.gene052954.t1 MTR_4g057850 33.962 265 152 10 17 267 23 278 1.68e-25 103
MS.gene052954.t1 MTR_4g057850 29.208 202 112 7 97 284 10 194 1.18e-11 64.7
MS.gene052954.t1 MTR_4g088545 27.869 244 161 4 8 237 4 246 1.07e-24 100
MS.gene052954.t1 MTR_4g088545 25.904 166 117 2 126 286 28 192 1.16e-13 70.1
MS.gene052954.t1 MTR_1g097890 29.433 282 164 8 17 292 52 304 4.44e-24 100
MS.gene052954.t1 MTR_8g092080 30.714 280 156 11 22 292 55 305 7.41e-24 99.4
MS.gene052954.t1 MTR_3g104600 28.197 305 185 9 14 292 33 329 5.17e-23 97.4
MS.gene052954.t1 MTR_8g027975 32.212 208 126 6 101 296 37 241 7.34e-23 97.4
MS.gene052954.t1 MTR_8g027975 24.606 317 207 9 5 292 40 353 2.26e-18 84.7
MS.gene052954.t1 MTR_4g088545 27.411 197 133 3 8 195 4 199 2.69e-22 93.6
MS.gene052954.t1 MTR_4g088545 25.904 166 117 2 126 286 28 192 1.03e-13 69.7
MS.gene052954.t1 MTR_7g109135 28.231 294 182 10 22 295 25 309 3.53e-22 94.7
MS.gene052954.t1 MTR_7g109135 32.124 193 122 6 110 297 22 210 8.28e-16 77.0
MS.gene052954.t1 MTR_8g098240 30.769 273 172 7 18 286 322 581 5.04e-22 96.7
MS.gene052954.t1 MTR_8g098240 27.746 173 118 5 22 191 416 584 1.67e-11 65.1
MS.gene052954.t1 MTR_5g009500 32.178 202 122 6 97 286 20 218 5.71e-22 94.7
MS.gene052954.t1 MTR_5g009500 25.407 307 197 10 14 292 36 338 2.97e-17 81.3
MS.gene052954.t1 MTR_6g034515 26.950 282 183 7 31 302 82 350 1.53e-21 93.6
MS.gene052954.t1 MTR_1g090330 26.070 257 169 7 31 273 29 278 2.82e-19 86.7
MS.gene052954.t1 MTR_1g090330 30.114 176 115 2 126 296 30 202 6.89e-19 85.5
MS.gene052954.t1 MTR_4g114320 24.055 291 212 4 8 296 115 398 4.15e-19 87.0
MS.gene052954.t1 MTR_8g086070 26.054 261 176 6 4 259 15 263 7.29e-19 85.5
MS.gene052954.t1 MTR_1g012030 25.347 288 204 6 8 292 131 410 9.18e-19 86.3
MS.gene052954.t1 MTR_1g012030 27.835 194 128 4 111 304 140 321 2.25e-17 82.4
MS.gene052954.t1 MTR_3g107510 26.471 204 137 4 104 304 117 310 1.85e-18 85.1
MS.gene052954.t1 MTR_3g107510 22.759 290 217 4 8 296 114 397 4.64e-18 84.0
MS.gene052954.t1 MTR_7g109135 26.871 294 179 10 22 295 25 302 6.35e-18 82.8
MS.gene052954.t1 MTR_7g109135 28.796 191 124 6 110 297 22 203 6.69e-11 62.4
MS.gene052954.t1 MTR_5g055410 25.979 281 176 7 32 292 37 305 7.31e-18 83.2
MS.gene052954.t1 MTR_5g055410 32.065 184 116 5 123 302 34 212 4.10e-15 75.1
MS.gene052954.t1 MTR_1g087840 27.273 275 180 7 32 292 35 303 1.66e-17 81.6
MS.gene052954.t1 MTR_1g087840 31.351 185 119 4 123 302 32 213 5.79e-14 71.6
MS.gene052954.t1 MTR_6g015860 24.503 302 200 11 25 303 21 317 1.72e-17 81.6
MS.gene052954.t1 MTR_6g091800 25.397 315 195 9 1 292 9 306 2.99e-17 80.9
MS.gene052954.t1 MTR_6g091800 30.097 206 121 7 97 286 5 203 1.16e-16 79.3
MS.gene052954.t1 MTR_6g091800 29.798 198 117 6 104 286 13 203 5.22e-17 79.7
MS.gene052954.t1 MTR_6g091800 27.143 280 158 10 1 256 9 266 5.65e-17 79.7
MS.gene052954.t1 MTR_6g091800 30.097 206 121 7 97 286 5 203 5.61e-17 79.3
MS.gene052954.t1 MTR_6g091800 27.059 255 149 8 1 235 9 246 8.89e-15 73.2
MS.gene052954.t1 MTR_7g109135 27.500 240 156 7 65 295 1 231 1.71e-16 77.8
MS.gene052954.t1 MTR_7g064980 29.825 171 110 3 125 286 40 209 2.00e-16 78.6
MS.gene052954.t1 MTR_7g064980 31.383 188 115 5 15 194 133 314 4.77e-16 77.4
MS.gene052954.t1 MTR_6g091800 30.481 187 107 7 97 267 5 184 2.42e-16 76.3
MS.gene052954.t1 MTR_5g073040 28.829 222 141 5 74 292 5 212 2.69e-16 78.6
MS.gene052954.t1 MTR_5g073040 27.413 259 169 6 17 266 40 288 1.63e-13 70.5
MS.gene052954.t1 MTR_8g019480 24.422 303 194 6 31 298 48 350 4.97e-16 77.8
MS.gene052954.t1 MTR_7g084400 28.571 196 125 6 96 286 194 379 6.36e-16 78.2
MS.gene052954.t1 MTR_7g084400 25.561 223 147 5 14 227 205 417 3.28e-15 75.9
MS.gene052954.t1 MTR_5g081910 26.490 302 165 12 31 286 23 313 3.83e-15 75.1
MS.gene052954.t1 MTR_3g100570 23.151 311 195 9 22 295 9 312 4.70e-15 74.7
MS.gene052954.t1 MTR_7g109135 28.261 184 115 6 121 295 35 210 6.33e-15 72.8
MS.gene052954.t1 MTR_4g018750 24.172 302 193 8 11 291 10 296 1.14e-14 73.6
MS.gene052954.t1 MTR_3g025800 27.331 311 192 8 14 294 26 332 1.64e-14 73.6
MS.gene052954.t1 MTR_6g091800 23.615 343 190 11 1 292 9 330 2.32e-14 72.8
MS.gene052954.t1 MTR_6g091800 24.522 314 173 10 1 267 9 305 2.56e-14 72.4
MS.gene052954.t1 MTR_7g015870 23.077 299 201 10 18 296 29 318 2.94e-14 72.4
MS.gene052954.t1 MTR_7g015870 23.985 271 177 10 18 268 25 286 3.41e-14 72.4
MS.gene052954.t1 MTR_4g018750 28.235 170 112 4 126 286 31 199 4.11e-14 71.6
MS.gene052954.t1 MTR_4g018750 24.907 269 166 8 11 258 10 263 2.50e-13 69.3
MS.gene052954.t1 MTR_2g436930 23.708 329 199 8 4 292 8 324 4.17e-14 72.0
MS.gene052954.t1 MTR_8g076760 34.659 176 89 8 124 286 28 190 4.35e-14 72.0
MS.gene052954.t1 MTR_8g076760 26.923 286 176 10 31 292 29 305 6.31e-14 71.2
MS.gene052954.t1 MTR_7g066690 23.311 296 195 7 16 292 17 299 5.46e-14 71.6
MS.gene052954.t1 MTR_6g034145 31.757 148 82 4 154 286 6 149 6.24e-14 70.9
MS.gene052954.t1 MTR_6g034145 24.615 260 164 7 53 292 5 252 1.73e-12 66.6
MS.gene052954.t1 MTR_4g005330 23.000 300 204 5 6 286 56 347 8.20e-14 71.6
MS.gene052954.t1 MTR_1g088995 28.740 254 157 9 31 273 48 288 1.30e-13 70.5
MS.gene052954.t1 MTR_2g098070 29.927 137 92 2 150 286 214 346 2.31e-13 70.1
MS.gene052954.t1 MTR_5g032420 22.857 315 195 8 22 292 9 319 2.83e-13 69.7
MS.gene052954.t1 MTR_3g462140 30.409 171 108 4 126 286 31 200 4.11e-13 68.9
MS.gene052954.t1 MTR_2g032610 23.827 277 185 7 31 287 44 314 1.18e-12 67.8
MS.gene052954.t1 MTR_4g119770 25.381 197 127 4 112 291 16 209 1.79e-12 66.6
MS.gene052954.t1 MTR_8g068890 22.330 309 197 7 22 292 9 312 1.97e-12 67.0
MS.gene052954.t1 MTR_8g068890 27.317 205 116 5 113 286 5 207 9.75e-12 65.1
MS.gene052954.t1 MTR_4g119770 22.956 318 189 8 24 292 15 325 2.02e-12 67.0
MS.gene052954.t1 MTR_5g081150 28.402 169 109 4 101 258 21 188 2.54e-12 65.9
MS.gene052954.t1 MTR_5g081150 28.402 169 109 4 101 258 21 188 4.37e-12 65.5
MS.gene052954.t1 MTR_5g081150 28.402 169 109 4 101 258 21 188 5.49e-12 65.9
MS.gene052954.t1 MTR_5g081150 31.915 188 114 5 15 194 140 321 3.26e-11 63.5
MS.gene052954.t1 MTR_8g036880 29.927 137 92 2 150 286 251 383 8.89e-12 65.5
MS.gene052954.t1 MTR_3g028590 27.673 159 106 3 133 286 223 377 1.20e-11 65.1
MS.gene052954.t1 MTR_3g028590 27.673 159 106 3 133 286 219 373 1.26e-11 65.1
MS.gene052954.t1 MTR_1g095780 26.299 308 182 13 6 299 515 791 2.26e-11 64.7
MS.gene052954.t1 MTR_2g436930 25.806 155 98 3 155 292 80 234 2.79e-11 62.8
MS.gene052954.t1 MTR_8g107270 24.180 244 165 6 53 286 65 298 6.63e-11 62.4
MS.gene052954.t1 MTR_8g086070 25.654 191 131 4 4 192 15 196 7.85e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052954.t1 AT1G79900 70.169 295 79 2 1 295 1 286 5.55e-142 402
MS.gene052954.t1 AT5G46800 34.237 295 169 7 14 288 6 295 3.64e-42 147
MS.gene052954.t1 AT5G46800 28.846 208 129 7 105 297 4 207 2.17e-11 63.9
MS.gene052954.t1 AT5G46800 34.237 295 169 7 14 288 6 295 3.64e-42 147
MS.gene052954.t1 AT5G46800 28.846 208 129 7 105 297 4 207 2.17e-11 63.9
MS.gene052954.t1 AT5G46800 34.237 295 169 7 14 288 6 295 3.64e-42 147
MS.gene052954.t1 AT5G46800 28.846 208 129 7 105 297 4 207 2.17e-11 63.9
MS.gene052954.t1 AT2G33820 26.962 293 198 5 14 292 16 306 2.16e-35 130
MS.gene052954.t1 AT2G33820 26.578 301 197 7 14 292 16 314 3.84e-33 124
MS.gene052954.t1 AT1G34065 29.329 283 169 7 14 292 73 328 4.33e-26 105
MS.gene052954.t1 AT1G34065 29.329 283 169 7 14 292 80 335 5.38e-26 105
MS.gene052954.t1 AT2G33820 26.667 225 155 4 76 292 3 225 1.41e-25 102
MS.gene052954.t1 AT4G11440 32.028 281 172 9 14 286 328 597 5.10e-25 105
MS.gene052954.t1 AT4G11440 32.028 281 172 9 14 286 328 597 5.10e-25 105
MS.gene052954.t1 AT4G39460 28.966 290 179 8 16 303 58 322 6.73e-25 102
MS.gene052954.t1 AT4G39460 28.966 290 179 8 16 303 58 322 6.73e-25 102
MS.gene052954.t1 AT4G39460 28.966 290 179 8 16 303 58 322 6.73e-25 102
MS.gene052954.t1 AT5G19760 26.667 300 192 7 14 304 16 296 1.94e-24 100
MS.gene052954.t1 AT5G01340 30.976 297 178 11 17 294 18 306 4.98e-24 99.8
MS.gene052954.t1 AT5G01340 29.767 215 120 7 97 297 5 202 2.08e-12 67.0
MS.gene052954.t1 AT2G33820 25.641 234 157 5 14 231 16 248 4.55e-23 96.3
MS.gene052954.t1 AT1G25380 28.417 278 174 7 32 292 37 306 5.18e-23 97.8
MS.gene052954.t1 AT1G25380 28.417 278 174 7 32 292 37 306 5.18e-23 97.8
MS.gene052954.t1 AT4G01100 32.889 225 132 8 88 297 12 232 1.17e-22 96.7
MS.gene052954.t1 AT4G01100 23.899 318 208 8 5 292 31 344 2.28e-19 87.4
MS.gene052954.t1 AT4G01100 30.962 239 132 8 88 297 12 246 4.85e-22 95.1
MS.gene052954.t1 AT4G01100 22.936 327 204 8 5 287 31 353 9.10e-19 85.9
MS.gene052954.t1 AT4G01100 34.444 180 109 5 124 297 6 182 1.07e-20 90.5
MS.gene052954.t1 AT4G01100 24.126 286 183 8 32 287 8 289 1.25e-17 82.0
MS.gene052954.t1 AT3G20240 25.246 305 191 5 6 286 42 333 1.72e-20 90.5
MS.gene052954.t1 AT5G42130 27.719 285 176 10 32 302 134 402 2.07e-20 90.9
MS.gene052954.t1 AT4G32400 23.793 290 214 4 8 296 106 389 2.13e-20 90.9
MS.gene052954.t1 AT2G47490 28.975 283 170 10 32 295 33 303 3.23e-20 89.4
MS.gene052954.t1 AT1G74240 28.803 309 186 8 14 295 34 335 6.38e-20 89.4
MS.gene052954.t1 AT1G14140 25.098 255 175 6 31 273 31 281 8.54e-20 88.2
MS.gene052954.t1 AT1G14140 27.830 212 141 6 94 296 1 209 3.11e-15 75.1
MS.gene052954.t1 AT5G51050 25.175 286 204 6 5 286 210 489 1.65e-19 89.0
MS.gene052954.t1 AT5G61810 26.199 271 177 8 5 267 52 307 8.04e-19 85.9
MS.gene052954.t1 AT5G61810 28.796 191 119 7 11 194 152 332 3.39e-11 63.5
MS.gene052954.t1 AT4G26180 25.510 294 193 9 13 287 18 304 2.86e-18 84.0
MS.gene052954.t1 AT4G26180 29.744 195 121 4 104 286 15 205 4.33e-16 77.8
MS.gene052954.t1 AT5G61810 26.199 271 177 8 5 267 195 450 3.76e-18 84.7
MS.gene052954.t1 AT5G61810 28.796 191 119 7 11 194 295 475 4.09e-11 63.9
MS.gene052954.t1 AT4G26180 26.374 273 175 9 14 267 19 284 3.83e-18 83.2
MS.gene052954.t1 AT4G26180 29.744 195 121 4 104 286 15 205 2.16e-16 78.2
MS.gene052954.t1 AT4G03115 28.395 243 155 8 31 266 53 283 9.22e-18 82.4
MS.gene052954.t1 AT4G03115 27.500 200 132 6 103 299 29 218 9.57e-13 68.2
MS.gene052954.t1 AT4G03115 28.395 243 155 8 31 266 85 315 1.24e-17 82.4
MS.gene052954.t1 AT4G03115 27.500 200 132 6 103 299 61 250 1.23e-12 67.8
MS.gene052954.t1 AT1G72820 25.392 319 195 9 16 297 31 343 3.35e-17 81.3
MS.gene052954.t1 AT1G72820 25.392 319 195 9 16 297 31 343 3.35e-17 81.3
MS.gene052954.t1 AT3G54110 25.912 274 169 9 14 267 13 272 4.28e-17 80.5
MS.gene052954.t1 AT3G54110 30.319 188 108 5 126 304 31 204 8.80e-15 73.9
MS.gene052954.t1 AT1G74240 28.082 292 176 8 31 295 3 287 5.47e-17 80.1
MS.gene052954.t1 AT5G66380 27.667 300 181 11 18 292 12 300 3.17e-16 78.2
MS.gene052954.t1 AT1G14560 25.180 278 179 8 32 286 43 314 4.37e-16 77.8
MS.gene052954.t1 AT1G14560 27.684 177 110 4 124 286 41 213 2.95e-11 63.9
MS.gene052954.t1 AT2G37890 29.082 196 130 5 6 194 139 332 4.46e-16 77.8
MS.gene052954.t1 AT2G37890 24.503 302 193 8 14 292 43 332 2.41e-15 75.9
MS.gene052954.t1 AT2G37890 31.250 192 117 8 105 286 41 227 6.84e-15 74.3
MS.gene052954.t1 AT5G58970 25.000 308 190 10 2 286 3 292 4.53e-16 77.4
MS.gene052954.t1 AT1G14560 25.869 259 163 8 32 267 43 295 6.75e-16 77.0
MS.gene052954.t1 AT3G55640 27.869 183 124 3 111 286 39 220 7.67e-16 76.3
MS.gene052954.t1 AT3G55640 27.869 183 124 3 111 286 39 220 7.67e-16 76.3
MS.gene052954.t1 AT4G24570 25.253 297 176 8 14 273 4 291 1.37e-15 76.3
MS.gene052954.t1 AT4G24570 27.805 205 110 6 117 286 9 210 2.39e-12 67.0
MS.gene052954.t1 AT3G53940 29.787 188 114 4 111 286 74 255 1.75e-15 75.5
MS.gene052954.t1 AT4G03115 28.111 217 142 6 52 266 8 212 2.18e-15 74.7
MS.gene052954.t1 AT3G55640 27.869 183 124 3 111 286 39 220 2.26e-15 75.9
MS.gene052954.t1 AT3G55640 30.769 195 129 4 1 191 130 322 3.68e-15 75.1
MS.gene052954.t1 AT3G55640 27.869 183 124 3 111 286 39 220 2.26e-15 75.9
MS.gene052954.t1 AT3G55640 30.769 195 129 4 1 191 130 322 3.68e-15 75.1
MS.gene052954.t1 AT4G03115 28.111 217 142 6 52 266 16 220 2.40e-15 74.7
MS.gene052954.t1 AT3G53940 29.947 187 119 5 15 194 179 360 3.26e-15 75.5
MS.gene052954.t1 AT3G53940 29.787 188 114 4 111 286 74 255 3.62e-15 75.5
MS.gene052954.t1 AT5G07320 24.364 275 195 5 14 286 207 470 4.79e-14 72.8
MS.gene052954.t1 AT5G07320 29.167 168 109 4 125 292 224 381 1.33e-12 68.2
MS.gene052954.t1 AT5G07320 26.178 191 124 5 11 194 296 476 1.37e-12 68.2
MS.gene052954.t1 AT1G07030 27.962 211 140 5 94 302 25 225 5.42e-14 71.6
MS.gene052954.t1 AT1G07030 26.148 283 175 9 2 266 24 290 3.63e-11 63.5
MS.gene052954.t1 AT5G58970 28.723 188 112 5 126 304 32 206 6.61e-14 70.9
MS.gene052954.t1 AT1G14560 26.667 195 120 5 111 286 26 216 1.69e-13 69.3
MS.gene052954.t1 AT5G13490 29.375 160 103 3 133 286 214 369 1.75e-13 70.9
MS.gene052954.t1 AT5G13490 29.375 160 103 3 133 286 214 369 1.75e-13 70.9
MS.gene052954.t1 AT5G09470 28.662 157 106 2 134 286 77 231 2.91e-13 69.7
MS.gene052954.t1 AT5G09470 24.891 229 163 5 48 273 91 313 9.58e-12 65.1
MS.gene052954.t1 AT4G03115 27.500 200 132 6 103 299 29 218 3.77e-13 68.2
MS.gene052954.t1 AT4G03115 27.500 200 132 6 103 299 29 218 4.17e-13 67.8
MS.gene052954.t1 AT5G15640 23.297 279 182 9 14 268 18 288 5.45e-13 68.9
MS.gene052954.t1 AT5G15640 23.297 279 182 9 14 268 25 295 6.53e-13 68.6
MS.gene052954.t1 AT2G39970 23.311 296 184 8 31 286 23 315 7.33e-13 68.6
MS.gene052954.t1 AT2G46320 25.000 228 124 6 110 290 25 252 2.00e-12 67.4
MS.gene052954.t1 AT2G30160 27.473 182 123 3 111 292 43 215 2.12e-12 67.0
MS.gene052954.t1 AT2G46320 29.452 146 95 3 153 290 8 153 2.27e-12 65.9
MS.gene052954.t1 AT2G46320 29.452 146 95 3 153 290 8 153 3.19e-12 65.9
MS.gene052954.t1 AT2G46320 29.452 146 95 3 153 290 8 153 3.19e-12 65.9
MS.gene052954.t1 AT2G46320 29.452 146 95 3 153 290 8 153 3.19e-12 65.9
MS.gene052954.t1 AT5G48970 25.238 210 139 4 110 304 22 228 4.72e-12 66.2
MS.gene052954.t1 AT5G48970 23.913 322 184 9 23 292 22 334 2.98e-11 63.9
MS.gene052954.t1 AT2G22500 23.052 308 197 8 22 295 9 310 8.76e-12 65.1
MS.gene052954.t1 AT5G56450 23.116 199 139 5 111 296 35 232 1.51e-11 64.7
MS.gene052954.t1 AT3G21390 26.882 186 124 4 117 291 26 210 1.82e-11 64.3
MS.gene052954.t1 AT3G21390 23.676 321 189 10 14 287 14 325 2.19e-11 64.3
MS.gene052954.t1 AT3G21390 26.882 186 124 4 117 291 48 232 2.39e-11 64.3
MS.gene052954.t1 AT3G21390 23.676 321 189 10 14 287 36 347 2.55e-11 63.9
MS.gene052954.t1 AT3G51870 23.792 269 184 7 36 302 120 369 2.90e-11 63.9
MS.gene052954.t1 AT5G64970 27.222 180 107 5 32 191 120 295 5.49e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGCTGGTATAATTTC+TGG 0.229075 4.1:-83568929 MS.gene052954:CDS
GTAAGGATAGAATGGATTTC+TGG 0.274280 4.1:-83569006 None:intergenic
TGGTAAAAGCAGAACCATTT+TGG 0.292335 4.1:+83568864 None:intergenic
GAATTTGTGGCTGGTGGATT+TGG 0.305163 4.1:-83568953 MS.gene052954:CDS
CTTTAGACAACATTTGTCTA+AGG 0.317894 4.1:+83568840 None:intergenic
TATAATTTCTGGTTATCCTT+TGG 0.324296 4.1:-83568918 MS.gene052954:CDS
CAACAAAGTGGTGGCCAAAA+TGG 0.330381 4.1:-83568878 MS.gene052954:CDS
GAGTTTCTTGCAAGTAGTTC+AGG 0.334182 4.1:-83568980 MS.gene052954:CDS
CCTGTGTTGTGGCGCGGTTT+AGG 0.358076 4.1:-83566749 MS.gene052954:CDS
CTCGTCTTCACAACATCAAA+AGG 0.383330 4.1:+83566854 None:intergenic
ACCTAATGCAACACTCTTGT+AGG 0.402333 4.1:+83567216 None:intergenic
GGTGGATTTGGAGGCACTGC+TGG 0.406098 4.1:-83568941 MS.gene052954:CDS
GCCAGAGCATTTGTTGTGAA+TGG 0.409963 4.1:-83566716 MS.gene052954:CDS
ACAAACCAGTCAAAAGAATC+TGG 0.411503 4.1:-83567115 MS.gene052954:CDS
AGACAAATGTTGTCTAAAGA+AGG 0.414361 4.1:-83568836 MS.gene052954:CDS
TTGGTGTCTGGAGGATTAGC+GGG 0.424572 4.1:-83566902 MS.gene052954:CDS
CGCGGCATATATCGAGGACT+TGG 0.435598 4.1:-83567043 MS.gene052954:CDS
GAGTGTTGCATTAGGTGGAA+TGG 0.441365 4.1:-83567209 MS.gene052954:CDS
TTGTTCTCTGTACCGTGGCA+TGG 0.444165 4.1:-83568810 MS.gene052954:CDS
TTGAATACTATGTTGGTGTC+TGG 0.453435 4.1:-83566914 MS.gene052954:CDS
TAGTTCAGGTAGAGAATTTG+TGG 0.458521 4.1:-83568966 MS.gene052954:CDS
CAATGAAAACGTTCAAATGC+AGG 0.490208 4.1:-83566648 MS.gene052954:CDS
AGTGTTGCATTAGGTGGAAT+GGG 0.491775 4.1:-83567208 MS.gene052954:CDS
TCCTACAAGAGTGTTGCATT+AGG 0.492774 4.1:-83567217 MS.gene052954:CDS
TGTTCTCTGTACCGTGGCAT+GGG 0.499665 4.1:-83568809 MS.gene052954:CDS
TGAAAAGTAACTGATGCTAA+TGG 0.501788 4.1:+83568782 None:intergenic
ACGAAAAGCGTTAGAGAAGA+AGG 0.501977 4.1:-83566776 MS.gene052954:CDS
GGTAGAGAATTTGTGGCTGG+TGG 0.502758 4.1:-83568959 MS.gene052954:CDS
AGAAAGTTTGAATACTATGT+TGG 0.504957 4.1:-83566921 MS.gene052954:CDS
GTTGGTGTCTGGAGGATTAG+CGG 0.505819 4.1:-83566903 MS.gene052954:CDS
AAACATATGCAGTTCTCTCA+AGG 0.505854 4.1:-83567276 MS.gene052954:CDS
AAGTTTATTGCTTTCACCAG+TGG 0.509839 4.1:-83567170 MS.gene052954:CDS
ACCATTCACAACAAATGCTC+TGG 0.512219 4.1:+83566715 None:intergenic
CCTAAACCGCGCCACAACAC+AGG 0.527341 4.1:+83566749 None:intergenic
GAACTACTTGCAAGAAACTC+TGG 0.529528 4.1:+83568983 None:intergenic
AGACAACATTTGTCTAAGGA+TGG 0.534626 4.1:+83568844 None:intergenic
GGATCTTTAGCAGAATCAGA+TGG 0.534644 4.1:+83567244 None:intergenic
TACAAGAGTGTTGCATTAGG+TGG 0.540128 4.1:-83567214 MS.gene052954:CDS
TTTGTGGCTGGTGGATTTGG+AGG 0.542646 4.1:-83568950 MS.gene052954:CDS
TCAGGTAGAGAATTTGTGGC+TGG 0.550186 4.1:-83568962 MS.gene052954:CDS
GCATTAGGTGGAATGGGCAC+AGG 0.562056 4.1:-83567202 MS.gene052954:CDS
ATGAGGGATATACCTTCTCA+TGG 0.567380 4.1:-83567010 MS.gene052954:CDS
GACTTGGCATCACTATAATG+AGG 0.581438 4.1:-83567027 MS.gene052954:CDS
CTAAACCGCGCCACAACACA+GGG 0.586443 4.1:+83566750 None:intergenic
AACATATGCAGTTCTCTCAA+GGG 0.587290 4.1:-83567275 MS.gene052954:CDS
TCGTCTTCACAACATCAAAA+GGG 0.593439 4.1:+83566855 None:intergenic
AATGCAACACTCTTGTAGGA+TGG 0.603898 4.1:+83567220 None:intergenic
GGATACCCTGTGTTGTGGCG+CGG 0.610153 4.1:-83566755 MS.gene052954:CDS
TGGTGTCTGGAGGATTAGCG+GGG 0.610871 4.1:-83566901 MS.gene052954:CDS
GATCTTTAGCAGAATCAGAT+GGG 0.611273 4.1:+83567245 None:intergenic
AATACTATGTTGGTGTCTGG+AGG 0.616080 4.1:-83566911 MS.gene052954:CDS
CCTTCTGCTATAAAATACAA+AGG 0.619453 4.1:-83566815 MS.gene052954:CDS
AAGAAGGATACCCTGTGTTG+TGG 0.621789 4.1:-83566760 MS.gene052954:CDS
CTAATGGTGCACCCATGCCA+CGG 0.621860 4.1:+83568798 None:intergenic
TTAGGTGGAATGGGCACAGG+AGG 0.622016 4.1:-83567199 MS.gene052954:CDS
TCTGGACATATGAATACATG+AGG 0.629048 4.1:-83566979 MS.gene052954:CDS
GCAACACTCTTGTAGGATGG+AGG 0.631532 4.1:+83567223 None:intergenic
ACTTGGCATCACTATAATGA+GGG 0.646915 4.1:-83567026 MS.gene052954:CDS
CTTAGAATCAGACAACAAAG+TGG 0.668062 4.1:-83568890 MS.gene052954:CDS
TGGAGAAAAGAGGGTTTGCG+CGG 0.668379 4.1:-83567061 MS.gene052954:CDS
AGAATCAGACAACAAAGTGG+TGG 0.674748 4.1:-83568887 MS.gene052954:CDS
CTGATTCTAAGAGTATCCAA+AGG 0.682126 4.1:+83568902 None:intergenic
GGTTTGCGCGGCATATATCG+AGG 0.692095 4.1:-83567049 MS.gene052954:CDS
CTGGACATATGAATACATGA+GGG 0.692763 4.1:-83566978 MS.gene052954:CDS
GTGGCGCGGTTTAGGAACTG+CGG 0.716540 4.1:-83566741 MS.gene052954:CDS
GGTGTCTGGAGGATTAGCGG+GGG 0.720060 4.1:-83566900 MS.gene052954:CDS
CTGCTTATGAGATTACACTG+AGG 0.757246 4.1:-83566682 MS.gene052954:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAATATTATTTGC+TGG + chr4.1:83567868-83567887 None:intergenic 10.0%
!! AATAATATTTATAATTTCCT+AGG - chr4.1:83567871-83567890 MS.gene052954:intron 10.0%
!!! TTTTTTATAGATAAACAAAA+TGG + chr4.1:83567691-83567710 None:intergenic 10.0%
!! ATTGTTTAGATAAAAAGATT+AGG - chr4.1:83567437-83567456 MS.gene052954:intron 15.0%
!!! TAATTAGTGCTTTTTTTATT+TGG - chr4.1:83567332-83567351 MS.gene052954:intron 15.0%
!! ACGAAAATTGTCTAAATATT+TGG - chr4.1:83568160-83568179 MS.gene052954:intron 20.0%
!! AGAAACAAGAAAGATTAAAA+TGG + chr4.1:83567021-83567040 None:intergenic 20.0%
!! AGTAAAATACCAAAATTGTT+AGG - chr4.1:83567597-83567616 MS.gene052954:intron 20.0%
!! ATATTTAATATTGCTTGAGT+TGG + chr4.1:83567488-83567507 None:intergenic 20.0%
!! ATGGTATGATTTATCATTTA+TGG - chr4.1:83566946-83566965 MS.gene052954:CDS 20.0%
!! TAAAAGTAGCTAAAAACATA+TGG - chr4.1:83568551-83568570 MS.gene052954:intron 20.0%
!!! ATTTGTTTATCTTCGTTTTT+CGG - chr4.1:83568311-83568330 MS.gene052954:intron 20.0%
!!! GAGTTTTTTCTCTATATTTT+TGG + chr4.1:83567734-83567753 None:intergenic 20.0%
! AAAAACATATGGAGAAAAGA+GGG - chr4.1:83568562-83568581 MS.gene052954:intron 25.0%
! AAATACCAAAATTGTTAGGT+TGG - chr4.1:83567601-83567620 MS.gene052954:intron 25.0%
! AGAAAGTTTGAATACTATGT+TGG - chr4.1:83568711-83568730 MS.gene052954:intron 25.0%
! AGATAAAAAGATTAGGATCA+GGG - chr4.1:83567444-83567463 MS.gene052954:intron 25.0%
! AGTGAGAAGAAAAAAAATAG+TGG - chr4.1:83567263-83567282 MS.gene052954:CDS 25.0%
! CACTTTAATATCTCATATGA+AGG + chr4.1:83568265-83568284 None:intergenic 25.0%
! TAAAAACATATGGAGAAAAG+AGG - chr4.1:83568561-83568580 MS.gene052954:intron 25.0%
! TAGATAAAAAGATTAGGATC+AGG - chr4.1:83567443-83567462 MS.gene052954:intron 25.0%
! TATTGCAACAATCAAAGAAA+TGG - chr4.1:83568086-83568105 MS.gene052954:intron 25.0%
! TCTCATATGAAGGAATAATA+TGG + chr4.1:83568255-83568274 None:intergenic 25.0%
! TGAAATAGAATTGATCTATG+TGG + chr4.1:83568195-83568214 None:intergenic 25.0%
!!! ATGTTTTTAGCTACTTTTAC+AGG + chr4.1:83568550-83568569 None:intergenic 25.0%
!!! TATAATTTCTGGTTATCCTT+TGG - chr4.1:83566714-83566733 MS.gene052954:CDS 25.0%
!!! TCTCTATATTTTTGGTGAAA+AGG + chr4.1:83567726-83567745 None:intergenic 25.0%
AAAACTCTACAACTGTTACA+TGG - chr4.1:83567747-83567766 MS.gene052954:intron 30.0%
AAACTCTACAACTGTTACAT+GGG - chr4.1:83567748-83567767 MS.gene052954:intron 30.0%
AAATTCATACACACAAATGC+AGG + chr4.1:83567656-83567675 None:intergenic 30.0%
ACAAACTTCATGTGTAGATA+AGG + chr4.1:83568024-83568043 None:intergenic 30.0%
AGACAAATGTTGTCTAAAGA+AGG - chr4.1:83566796-83566815 MS.gene052954:CDS 30.0%
ATAAGAATCGATTGTGATTG+TGG - chr4.1:83567294-83567313 MS.gene052954:CDS 30.0%
ATCTGGTACAAATCATCAAT+TGG - chr4.1:83566988-83567007 MS.gene052954:CDS 30.0%
ATTCATGAAAGAGATGACAA+AGG + chr4.1:83567181-83567200 None:intergenic 30.0%
CCTTCTGCTATAAAATACAA+AGG - chr4.1:83568817-83568836 MS.gene052954:CDS 30.0%
CTTTAGACAACATTTGTCTA+AGG + chr4.1:83566795-83566814 None:intergenic 30.0%
TAAGAATCGATTGTGATTGT+GGG - chr4.1:83567295-83567314 MS.gene052954:CDS 30.0%
TAATTCAATGTCTAAGGATG+AGG - chr4.1:83567782-83567801 MS.gene052954:intron 30.0%
TATCTACACATGAAGTTTGT+GGG - chr4.1:83568024-83568043 MS.gene052954:intron 30.0%
TCTGGTACAAATCATCAATT+GGG - chr4.1:83566989-83567008 MS.gene052954:CDS 30.0%
TGAAAAGTAACTGATGCTAA+TGG + chr4.1:83566853-83566872 None:intergenic 30.0%
TGTCATCTCTTTCATGAATT+TGG - chr4.1:83567182-83567201 MS.gene052954:CDS 30.0%
TTATCTACACATGAAGTTTG+TGG - chr4.1:83568023-83568042 MS.gene052954:intron 30.0%
! AACAGTGCTTTTGTATATTC+TGG - chr4.1:83567956-83567975 MS.gene052954:intron 30.0%
! ACAGTGCTTTTGTATATTCT+GGG - chr4.1:83567957-83567976 MS.gene052954:intron 30.0%
! CCTTTGTATTTTATAGCAGA+AGG + chr4.1:83568820-83568839 None:intergenic 30.0%
! TAAATATTTTCACATGAGCC+AGG - chr4.1:83567501-83567520 MS.gene052954:intron 30.0%
!! AATCTCTGATGGATTCAATT+TGG - chr4.1:83567232-83567251 MS.gene052954:CDS 30.0%
!! ATATTGCTTGAGTTGGAAAA+AGG + chr4.1:83567481-83567500 None:intergenic 30.0%
!! GTTTTGATGCATCTTTGATT+TGG + chr4.1:83567900-83567919 None:intergenic 30.0%
!! TTCATGAATTTGGTTTGTGA+AGG - chr4.1:83567192-83567211 MS.gene052954:CDS 30.0%
!!! ATTAGCATCAGTTACTTTTC+AGG - chr4.1:83566852-83566871 MS.gene052954:CDS 30.0%
AAACATATGCAGTTCTCTCA+AGG - chr4.1:83568356-83568375 MS.gene052954:intron 35.0%
AACATATGCAGTTCTCTCAA+GGG - chr4.1:83568357-83568376 MS.gene052954:intron 35.0%
AAGAATCGATTGTGATTGTG+GGG - chr4.1:83567296-83567315 MS.gene052954:intron 35.0%
AAGTTTATTGCTTTCACCAG+TGG - chr4.1:83568462-83568481 MS.gene052954:intron 35.0%
AATAGCCTTTGAATGCCTTA+TGG + chr4.1:83568070-83568089 None:intergenic 35.0%
ACAAACCAGTCAAAAGAATC+TGG - chr4.1:83568517-83568536 MS.gene052954:intron 35.0%
ACAAGAGAGAAAAGTCTACA+AGG - chr4.1:83567562-83567581 MS.gene052954:intron 35.0%
ACTTGGCATCACTATAATGA+GGG - chr4.1:83568606-83568625 MS.gene052954:intron 35.0%
AGACAACATTTGTCTAAGGA+TGG + chr4.1:83566791-83566810 None:intergenic 35.0%
CAATGAAAACGTTCAAATGC+AGG - chr4.1:83568984-83569003 MS.gene052954:CDS 35.0%
CACTGTTCATGTCATTGTAT+TGG + chr4.1:83567943-83567962 None:intergenic 35.0%
CAGAAGTAAAAACCATGAGA+AGG + chr4.1:83568637-83568656 None:intergenic 35.0%
CATCATCACAAATTTGCAGT+TGG - chr4.1:83567056-83567075 MS.gene052954:CDS 35.0%
CTGGACATATGAATACATGA+GGG - chr4.1:83568654-83568673 MS.gene052954:intron 35.0%
CTTAGAATCAGACAACAAAG+TGG - chr4.1:83566742-83566761 MS.gene052954:CDS 35.0%
GATCTTTAGCAGAATCAGAT+GGG + chr4.1:83568390-83568409 None:intergenic 35.0%
GATGTTCTTTGAATCTCTGA+TGG - chr4.1:83567221-83567240 MS.gene052954:CDS 35.0%
GGCATGTAATTCAATGTCTA+AGG - chr4.1:83567776-83567795 MS.gene052954:intron 35.0%
GTCTAACTGTTTGCATATCA+GGG + chr4.1:83567544-83567563 None:intergenic 35.0%
TAGTTCAGGTAGAGAATTTG+TGG - chr4.1:83566666-83566685 MS.gene052954:CDS 35.0%
TATGGATGGGAACAAACATA+AGG - chr4.1:83567980-83567999 MS.gene052954:intron 35.0%
TCGTCTTCACAACATCAAAA+GGG + chr4.1:83568780-83568799 None:intergenic 35.0%
TCTAACTGTTTGCATATCAG+GGG + chr4.1:83567543-83567562 None:intergenic 35.0%
TCTGGACATATGAATACATG+AGG - chr4.1:83568653-83568672 MS.gene052954:intron 35.0%
TGTATATTCTGGGTATGGAT+GGG - chr4.1:83567967-83567986 MS.gene052954:intron 35.0%
TGTCTAACTGTTTGCATATC+AGG + chr4.1:83567545-83567564 None:intergenic 35.0%
TTGTATATTCTGGGTATGGA+TGG - chr4.1:83567966-83567985 MS.gene052954:intron 35.0%
! ATGTCATTGTATTGGTAGGT+GGG + chr4.1:83567935-83567954 None:intergenic 35.0%
! CTTCTCATGGTTTTTACTTC+TGG - chr4.1:83568635-83568654 MS.gene052954:intron 35.0%
! GCTTTTGTATATTCTGGGTA+TGG - chr4.1:83567962-83567981 MS.gene052954:intron 35.0%
! GTTCATGTCATTGTATTGGT+AGG + chr4.1:83567939-83567958 None:intergenic 35.0%
! TATAGCCATAAGGCATTCAA+AGG - chr4.1:83568062-83568081 MS.gene052954:intron 35.0%
! TGGTAAAAGCAGAACCATTT+TGG + chr4.1:83566771-83566790 None:intergenic 35.0%
! TTGAATACTATGTTGGTGTC+TGG - chr4.1:83568718-83568737 MS.gene052954:intron 35.0%
! TTGTTCCAGATTCTTTTGAC+TGG + chr4.1:83568525-83568544 None:intergenic 35.0%
!! CTGATTCTAAGAGTATCCAA+AGG + chr4.1:83566733-83566752 None:intergenic 35.0%
!! TGTTTATCTTCGTTTTTCGG+TGG - chr4.1:83568314-83568333 MS.gene052954:intron 35.0%
AATGCAACACTCTTGTAGGA+TGG + chr4.1:83568415-83568434 None:intergenic 40.0%
ACAACTGTTACATGGGCATA+TGG - chr4.1:83567755-83567774 MS.gene052954:intron 40.0%
ACCATTCACAACAAATGCTC+TGG + chr4.1:83568920-83568939 None:intergenic 40.0%
ACCTAATGCAACACTCTTGT+AGG + chr4.1:83568419-83568438 None:intergenic 40.0%
AGAATCAGACAACAAAGTGG+TGG - chr4.1:83566745-83566764 MS.gene052954:CDS 40.0%
AGTGTTGCATTAGGTGGAAT+GGG - chr4.1:83568424-83568443 MS.gene052954:intron 40.0%
ATACACACAAATGCAGGTGT+CGG + chr4.1:83567650-83567669 None:intergenic 40.0%
ATGAGGGAAAAATTGCATCC+AGG - chr4.1:83568670-83568689 MS.gene052954:intron 40.0%
ATGAGGGATATACCTTCTCA+TGG - chr4.1:83568622-83568641 MS.gene052954:intron 40.0%
CATCCAGGTTGTAGAAAAAG+TGG - chr4.1:83568685-83568704 MS.gene052954:intron 40.0%
CTCGTCTTCACAACATCAAA+AGG + chr4.1:83568781-83568800 None:intergenic 40.0%
CTGCTTATGAGATTACACTG+AGG - chr4.1:83568950-83568969 MS.gene052954:CDS 40.0%
GAACTACTTGCAAGAAACTC+TGG + chr4.1:83566652-83566671 None:intergenic 40.0%
GACTTGGCATCACTATAATG+AGG - chr4.1:83568605-83568624 MS.gene052954:intron 40.0%
GAGTTTCTTGCAAGTAGTTC+AGG - chr4.1:83566652-83566671 MS.gene052954:CDS 40.0%
GGATCTTTAGCAGAATCAGA+TGG + chr4.1:83568391-83568410 None:intergenic 40.0%
TCAACATGATGTTGCATGTG+TGG - chr4.1:83567138-83567157 MS.gene052954:CDS 40.0%
! AATACTATGTTGGTGTCTGG+AGG - chr4.1:83568721-83568740 MS.gene052954:intron 40.0%
! CATGTCATTGTATTGGTAGG+TGG + chr4.1:83567936-83567955 None:intergenic 40.0%
! GACGTCCAACCTAACAATTT+TGG + chr4.1:83567609-83567628 None:intergenic 40.0%
! GTTGATAAGATCGTTCGATC+TGG - chr4.1:83566971-83566990 MS.gene052954:CDS 40.0%
!! ACGAAAAGCGTTAGAGAAGA+AGG - chr4.1:83568856-83568875 MS.gene052954:CDS 40.0%
!! CATCTTTGATTTGGCATCCT+AGG + chr4.1:83567891-83567910 None:intergenic 40.0%
!! CGAATTTTGATCAACTCCAC+TGG + chr4.1:83568481-83568500 None:intergenic 40.0%
!! TACAAGAGTGTTGCATTAGG+TGG - chr4.1:83568418-83568437 MS.gene052954:intron 40.0%
!! TCCTACAAGAGTGTTGCATT+AGG - chr4.1:83568415-83568434 MS.gene052954:intron 40.0%
!!! TGACCACTTTTTCTACAACC+TGG + chr4.1:83568691-83568710 None:intergenic 40.0%
AAGAAGGATACCCTGTGTTG+TGG - chr4.1:83568872-83568891 MS.gene052954:CDS 45.0%
CAACAAAGTGGTGGCCAAAA+TGG - chr4.1:83566754-83566773 MS.gene052954:CDS 45.0%
CGCTCATAGCACTTAATCGA+TGG - chr4.1:83566927-83566946 MS.gene052954:CDS 45.0%
CTGGGTCATGTATAGCCATA+AGG - chr4.1:83568052-83568071 MS.gene052954:intron 45.0%
GCAGTTGGATTCACGTGAAT+TGG - chr4.1:83567071-83567090 MS.gene052954:CDS 45.0%
GGCACTGCTGGTATAATTTC+TGG - chr4.1:83566703-83566722 MS.gene052954:CDS 45.0%
TACACACAAATGCAGGTGTC+GGG + chr4.1:83567649-83567668 None:intergenic 45.0%
TATGGCTATACATGACCCAG+TGG + chr4.1:83568052-83568071 None:intergenic 45.0%
TCAGGTAGAGAATTTGTGGC+TGG - chr4.1:83566670-83566689 MS.gene052954:CDS 45.0%
! ATTTTCACATGAGCCAGGTG+CGG - chr4.1:83567506-83567525 MS.gene052954:intron 45.0%
! GAGTGTTGCATTAGGTGGAA+TGG - chr4.1:83568423-83568442 MS.gene052954:intron 45.0%
! GGTTTTTGTTCTCTGTACCG+TGG - chr4.1:83566817-83566836 MS.gene052954:CDS 45.0%
!! GAATTTGTGGCTGGTGGATT+TGG - chr4.1:83566679-83566698 MS.gene052954:CDS 45.0%
!! GCCAGAGCATTTGTTGTGAA+TGG - chr4.1:83568916-83568935 MS.gene052954:CDS 45.0%
!! ACAAATATAAAATTAATAAA+AGG + chr4.1:83567387-83567406 None:intergenic 5.0%
!!! TAATATTAATTTTTTAGATT+TGG - chr4.1:83567095-83567114 MS.gene052954:CDS 5.0%
GCAACACTCTTGTAGGATGG+AGG + chr4.1:83568412-83568431 None:intergenic 50.0%
GGTAGAGAATTTGTGGCTGG+TGG - chr4.1:83566673-83566692 MS.gene052954:CDS 50.0%
TGGAGAAAAGAGGGTTTGCG+CGG - chr4.1:83568571-83568590 MS.gene052954:intron 50.0%
TGTTCTCTGTACCGTGGCAT+GGG - chr4.1:83566823-83566842 MS.gene052954:CDS 50.0%
TTGTTCTCTGTACCGTGGCA+TGG - chr4.1:83566822-83566841 MS.gene052954:CDS 50.0%
! ACACACAAATGCAGGTGTCG+GGG + chr4.1:83567648-83567667 None:intergenic 50.0%
! ATGAAGTTTGTGGGTGCCAC+TGG - chr4.1:83568033-83568052 MS.gene052954:intron 50.0%
! GTTGGTGTCTGGAGGATTAG+CGG - chr4.1:83568729-83568748 MS.gene052954:intron 50.0%
! TTGGTGTCTGGAGGATTAGC+GGG - chr4.1:83568730-83568749 MS.gene052954:intron 50.0%
! TTTTCGGTGGCAGAATGCTG+TGG - chr4.1:83568327-83568346 MS.gene052954:intron 50.0%
!! TGAAGTTTGTGGGTGCCACT+GGG - chr4.1:83568034-83568053 MS.gene052954:intron 50.0%
!! TTTGTGGCTGGTGGATTTGG+AGG - chr4.1:83566682-83566701 MS.gene052954:CDS 50.0%
CGCGGCATATATCGAGGACT+TGG - chr4.1:83568589-83568608 MS.gene052954:intron 55.0%
CTAAACCGCGCCACAACACA+GGG + chr4.1:83568885-83568904 None:intergenic 55.0%
CTAATGGTGCACCCATGCCA+CGG + chr4.1:83566837-83566856 None:intergenic 55.0%
GCATTAGGTGGAATGGGCAC+AGG - chr4.1:83568430-83568449 MS.gene052954:intron 55.0%
GGTTTGCGCGGCATATATCG+AGG - chr4.1:83568583-83568602 MS.gene052954:intron 55.0%
TTAGGTGGAATGGGCACAGG+AGG - chr4.1:83568433-83568452 MS.gene052954:intron 55.0%
! TGGTGTCTGGAGGATTAGCG+GGG - chr4.1:83568731-83568750 MS.gene052954:intron 55.0%
ATTAGCGGGGGTAGCGAGCT+GGG - chr4.1:83568744-83568763 MS.gene052954:intron 60.0%
CCTAAACCGCGCCACAACAC+AGG + chr4.1:83568886-83568905 None:intergenic 60.0%
CCTGTGTTGTGGCGCGGTTT+AGG - chr4.1:83568883-83568902 MS.gene052954:CDS 60.0%
GGATACCCTGTGTTGTGGCG+CGG - chr4.1:83568877-83568896 MS.gene052954:CDS 60.0%
GGATTCAGATCCACCGCACC+TGG + chr4.1:83567522-83567541 None:intergenic 60.0%
GTGGCGCGGTTTAGGAACTG+CGG - chr4.1:83568891-83568910 MS.gene052954:CDS 60.0%
TTCACATGAGCCAGGTGCGG+TGG - chr4.1:83567509-83567528 MS.gene052954:intron 60.0%
! GGTGTCTGGAGGATTAGCGG+GGG - chr4.1:83568732-83568751 MS.gene052954:intron 60.0%
!! GGTGGATTTGGAGGCACTGC+TGG - chr4.1:83566691-83566710 MS.gene052954:CDS 60.0%
GATTAGCGGGGGTAGCGAGC+TGG - chr4.1:83568743-83568762 MS.gene052954:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 83566637 83569017 83566637 ID=MS.gene052954
chr4.1 mRNA 83566637 83569017 83566637 ID=MS.gene052954.t1;Parent=MS.gene052954
chr4.1 exon 83568781 83569017 83568781 ID=MS.gene052954.t1.exon1;Parent=MS.gene052954.t1
chr4.1 CDS 83568781 83569017 83568781 ID=cds.MS.gene052954.t1;Parent=MS.gene052954.t1
chr4.1 exon 83566637 83567314 83566637 ID=MS.gene052954.t1.exon2;Parent=MS.gene052954.t1
chr4.1 CDS 83566637 83567314 83566637 ID=cds.MS.gene052954.t1;Parent=MS.gene052954.t1
Gene Sequence

>MS.gene052954

ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTGGCTGGTGGATTTGGAGGCACTGCTGGTATAATTTCTGGTTATCCTTTGGATACTCTTAGAATCAGACAACAAAGTGGTGGCCAAAATGGTTCTGCTTTTACCATCCTTAGACAAATGTTGTCTAAAGAAGGTTTTTGTTCTCTGTACCGTGGCATGGGTGCACCATTAGCATCAGTTACTTTTCAGGTAATTTTTTCTCTTTTTTGTATGTTAGATGATGATATAAAACTATATGATAGCGCTCATAGCACTTAATCGATGGTATGATTTATCATTTATGGACGTTGATAAGATCGTTCGATCTGGTACAAATCATCAATTGGGTTTATGCCATTTTAATCTTTCTTGTTTCTTGAGTTTAGATGCATCATCATCACAAATTTGCAGTTGGATTCACGTGAATTGGATAATATTAATTTTTTAGATTTGGTTTTTGTTATGTGTATCTTATCAACATGATGTTGCATGTGTGGATTATGTCACAAAGCATCCTTTGTCATCTCTTTCATGAATTTGGTTTGTGAAGGATTCTTGATGTTCTTTGAATCTCTGATGGATTCAATTTGGAAGAGAAAAGTGAGAAGAAAAAAAATAGTGGCTGATATGATAAGAATCGATTGTGATTGTGGGGAATAAATTATTCTTAATTAGTGCTTTTTTTATTTGGAATATACTCATTGATAAGAATGCTTAATTCCTTTTATTAATTTTATATTTGTGTAAACTCATAGTATTAGCTTTACTTTTGAATTGTTTAGATAAAAAGATTAGGATCAGGGACTAGTTGACACCTTTTTCCAACTCAAGCAATATTAAATATTTTCACATGAGCCAGGTGCGGTGGATCTGAATCCCCTGATATGCAAACAGTTAGACAAGAGAGAAAAGTCTACAAGGTCTAACTCAACTAGTAAAATACCAAAATTGTTAGGTTGGACGTCATGATCAGAGTTCGAACCCCGACACCTGCATTTGTGTGTATGAATTTATAATGACTCTGCCATTTTGTTTATCTATAAAAAAATGAAAATAAAACCTTTTCACCAAAAATATAGAGAAAAAACTCTACAACTGTTACATGGGCATATGGCATGTAATTCAATGTCTAAGGATGAGGTCATTCAAAAAATTCATAAAAGTTGATCACTTGTGATTATGACATTAAAATTGTGTCTAGCCAGCAAATAATATTTATAATTTCCTAGGATGCCAAATCAAAGATGCATCAAAACATTTTTTGTTCACCCACCTACCAATACAATGACATGAACAGTGCTTTTGTATATTCTGGGTATGGATGGGAACAAACATAAGGTACAAAATTGACATATCACCTTATCTACACATGAAGTTTGTGGGTGCCACTGGGTCATGTATAGCCATAAGGCATTCAAAGGCTATTGCAACAATCAAAGAAATGGTCTTTGAATCAATCATTTGATGTCAATGTTCTATTGTGAAAAAATATAACTACGAAAATTGTCTAAATATTTGGATATTGCAACCACATAGATCAATTCTATTTCATTTTTTGACTCTATCATTGTTTTATTTTGTTCTTGCTCCATATTATTCCTTCATATGAGATATTAAAGTGAAACTAAAGTTCATTGTCTATCATTAATTTGTTTATCTTCGTTTTTCGGTGGCAGAATGCTGTGGTTTTTCAAACATATGCAGTTCTCTCAAGGGCATTTGACCCATCTGATTCTGCTAAAGATCCTCCATCCTACAAGAGTGTTGCATTAGGTGGAATGGGCACAGGAGGTCTTCAAAGTTTATTGCTTTCACCAGTGGAGTTGATCAAAATTCGACTTCAGCTGCAAAACACAAACCAGTCAAAAGAATCTGGAACAACTCCTGTAAAAGTAGCTAAAAACATATGGAGAAAAGAGGGTTTGCGCGGCATATATCGAGGACTTGGCATCACTATAATGAGGGATATACCTTCTCATGGTTTTTACTTCTGGACATATGAATACATGAGGGAAAAATTGCATCCAGGTTGTAGAAAAAGTGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCGGGGGTAGCGAGCTGGGTTTGTTGCTACCCTTTTGATGTTGTGAAGACGAGACTACAAGCTCAAACGCCTTCTGCTATAAAATACAAAGGCGTCTATGATTGCATCACGAAAAGCGTTAGAGAAGAAGGATACCCTGTGTTGTGGCGCGGTTTAGGAACTGCGGTTGCCAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAGATTACACTGAGGTTTCTGTTTAACAATGAAAACGTTCAAATGCAGGAAACAATTTAG

Protein sequence

>MS.gene052954.t1

MDFWPEFLASSSGREFVAGGFGGTAGIISGYPLDTLRIRQQSGGQNGSAFTILRQMLSKEGFCSLYRGMGAPLASVTFQNAVVFQTYAVLSRAFDPSDSAKDPPSYKSVALGGMGTGGLQSLLLSPVELIKIRLQLQNTNQSKESGTTPVKVAKNIWRKEGLRGIYRGLGITIMRDIPSHGFYFWTYEYMREKLHPGCRKSGQESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQAQTPSAIKYKGVYDCITKSVREEGYPVLWRGLGTAVARAFVVNGAVFAAYEITLRFLFNNENVQMQETI