AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56970.t1 MTR_5g016810 96.887 514 11 3 1 512 1 511 0.0 1035
MS.gene56970.t1 MTR_5g016810 95.577 520 12 4 1 512 1 517 0.0 1026
MS.gene56970.t1 MTR_4g094868 68.819 542 118 17 1 512 1 521 0.0 600
MS.gene56970.t1 MTR_4g094868 68.508 543 119 17 1 512 1 522 0.0 599
MS.gene56970.t1 MTR_4g094868 73.851 348 63 11 172 512 39 365 7.41e-159 456
MS.gene56970.t1 MTR_7g100590 70.612 245 61 2 84 328 81 314 6.83e-99 306
MS.gene56970.t1 MTR_4g061200 57.864 337 102 8 1 328 1 306 2.78e-97 300
MS.gene56970.t1 MTR_4g061200 57.864 337 102 8 1 328 1 306 2.81e-96 300
MS.gene56970.t1 MTR_2g093060 78.109 201 42 1 133 331 112 312 4.59e-94 294
MS.gene56970.t1 MTR_2g093060 78.109 201 42 1 133 331 112 312 4.76e-94 294
MS.gene56970.t1 MTR_4g061200 54.303 337 99 9 1 328 1 291 1.83e-82 261
MS.gene56970.t1 MTR_4g061200 54.303 337 99 9 1 328 1 291 1.89e-81 261
MS.gene56970.t1 MTR_2g093060 72.139 201 39 2 133 331 112 297 3.06e-79 255
MS.gene56970.t1 MTR_7g061190 76.871 147 34 0 175 321 3 149 1.07e-70 223
MS.gene56970.t1 MTR_7g061190 43.529 85 45 2 135 217 55 138 5.16e-11 61.2
MS.gene56970.t1 MTR_1g049140 42.138 318 137 10 24 328 15 298 6.27e-52 181
MS.gene56970.t1 MTR_1g049140 44.521 292 113 10 41 328 52 298 8.89e-52 179
MS.gene56970.t1 MTR_2g098180 51.075 186 80 3 133 307 150 335 3.71e-51 182
MS.gene56970.t1 MTR_4g127930 55.030 169 65 3 150 307 159 327 5.56e-51 182
MS.gene56970.t1 MTR_5g015070 54.386 171 67 3 150 309 249 419 7.05e-51 182
MS.gene56970.t1 MTR_7g080460 46.637 223 99 5 133 344 243 456 7.75e-51 184
MS.gene56970.t1 MTR_4g065370 48.469 196 87 5 125 307 137 331 2.35e-50 181
MS.gene56970.t1 MTR_4g130270 51.724 174 73 3 144 306 41 214 1.44e-49 174
MS.gene56970.t1 MTR_3g103460 54.167 168 69 3 150 309 310 477 6.15e-49 179
MS.gene56970.t1 MTR_3g103460 47.297 74 37 1 151 222 410 483 2.19e-11 66.6
MS.gene56970.t1 MTR_8g044070 50.259 193 79 4 137 315 39 228 3.22e-48 172
MS.gene56970.t1 MTR_8g044070 46.154 78 40 1 152 227 156 233 3.55e-11 65.5
MS.gene56970.t1 MTR_8g068510 52.632 171 67 4 150 309 131 298 3.97e-48 171
MS.gene56970.t1 MTR_4g097520 53.571 168 70 3 150 309 310 477 4.04e-48 176
MS.gene56970.t1 MTR_1g049140 49.558 226 86 7 40 256 34 240 7.31e-48 166
MS.gene56970.t1 MTR_1g017400 52.976 168 71 3 150 309 312 479 1.93e-47 175
MS.gene56970.t1 MTR_8g020510 53.012 166 70 3 150 307 248 413 4.21e-47 172
MS.gene56970.t1 MTR_7g009410 49.718 177 75 3 150 315 65 238 2.19e-46 166
MS.gene56970.t1 MTR_6g011490 50.000 172 72 3 154 314 65 233 2.42e-46 166
MS.gene56970.t1 MTR_8g044040 50.838 179 80 2 140 310 46 224 1.24e-43 159
MS.gene56970.t1 MTR_8g044040 46.753 77 39 2 152 226 157 233 1.53e-11 66.6
MS.gene56970.t1 MTR_8g468920 49.468 188 86 3 128 306 46 233 3.59e-42 155
MS.gene56970.t1 MTR_4g007770 48.529 204 90 5 144 339 30 226 4.62e-42 153
MS.gene56970.t1 MTR_3g090510 80.000 105 21 0 181 285 163 267 6.09e-42 154
MS.gene56970.t1 MTR_2g460730 48.387 186 83 4 134 306 26 211 1.01e-38 145
MS.gene56970.t1 MTR_5g031880 51.412 177 72 4 150 315 224 397 1.40e-38 147
MS.gene56970.t1 MTR_7g060560 76.190 105 24 1 181 285 156 259 1.05e-37 143
MS.gene56970.t1 MTR_7g055620 95.455 44 2 0 227 270 6 49 9.59e-22 97.4
MS.gene56970.t1 MTR_7g091390 42.767 159 72 4 121 269 30 179 1.04e-20 94.7
MS.gene56970.t1 MTR_1g037030 77.083 48 11 0 219 266 118 165 4.25e-18 83.6
MS.gene56970.t1 MTR_7g091390 48.387 93 44 1 177 269 3 91 5.29e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56970.t1 AT4G36920 69.540 348 55 7 1 332 1 313 6.74e-138 405
MS.gene56970.t1 AT4G36920 69.540 348 55 7 1 332 1 313 6.74e-138 405
MS.gene56970.t1 AT5G67180 59.706 340 66 8 1 333 1 276 4.65e-105 318
MS.gene56970.t1 AT5G67180 59.706 340 66 8 1 333 1 276 6.08e-105 316
MS.gene56970.t1 AT5G67180 60.191 314 58 6 1 309 1 252 4.84e-99 300
MS.gene56970.t1 AT2G28550 59.740 308 85 6 41 327 38 327 6.63e-95 296
MS.gene56970.t1 AT5G67180 57.931 290 55 6 1 285 1 228 3.60e-81 253
MS.gene56970.t1 AT2G28550 55.844 308 82 7 41 327 38 312 2.91e-80 258
MS.gene56970.t1 AT2G28550 59.091 264 69 6 41 283 38 283 1.95e-76 244
MS.gene56970.t1 AT2G28550 57.831 249 66 6 41 268 38 268 3.28e-66 215
MS.gene56970.t1 AT2G28550 57.831 249 66 6 41 268 38 268 3.28e-66 215
MS.gene56970.t1 AT5G60120 44.767 344 152 9 1 332 1 318 3.53e-63 212
MS.gene56970.t1 AT5G60120 44.767 344 152 9 1 332 1 318 3.53e-63 212
MS.gene56970.t1 AT5G60120 44.767 344 152 9 1 332 1 318 3.53e-63 212
MS.gene56970.t1 AT5G60120 41.962 367 179 9 1 355 1 345 1.77e-62 212
MS.gene56970.t1 AT5G60120 44.767 344 152 9 1 332 1 318 2.61e-62 212
MS.gene56970.t1 AT5G60120 44.767 344 152 9 1 332 1 318 3.17e-62 211
MS.gene56970.t1 AT2G28550 66.467 167 41 1 170 336 4 155 3.96e-58 194
MS.gene56970.t1 AT5G57390 43.165 278 121 7 81 332 22 288 3.72e-53 186
MS.gene56970.t1 AT5G57390 43.165 278 121 7 81 332 140 406 2.22e-52 187
MS.gene56970.t1 AT1G51190 51.053 190 80 4 129 307 168 355 8.30e-52 185
MS.gene56970.t1 AT1G72570 51.351 185 78 4 134 307 205 388 4.38e-51 180
MS.gene56970.t1 AT4G37750 45.701 221 104 4 150 354 280 500 1.71e-50 181
MS.gene56970.t1 AT4G37750 43.529 85 46 1 140 222 372 456 3.12e-11 66.2
MS.gene56970.t1 AT3G20840 48.969 194 87 4 133 315 162 354 1.42e-49 179
MS.gene56970.t1 AT5G17430 43.320 247 111 7 125 344 122 366 1.13e-48 176
MS.gene56970.t1 AT2G39250 54.404 193 58 5 141 332 96 259 1.89e-48 170
MS.gene56970.t1 AT5G17430 43.320 247 111 7 125 344 184 428 2.18e-48 176
MS.gene56970.t1 AT2G39250 76.636 107 25 0 141 247 96 202 4.62e-47 164
MS.gene56970.t1 AT3G54990 65.734 143 42 1 117 259 93 228 8.42e-44 155
MS.gene56970.t1 AT3G54320 53.488 172 69 2 150 310 62 233 9.43e-44 160
MS.gene56970.t1 AT3G54320 53.488 172 69 2 150 310 62 233 1.01e-43 160
MS.gene56970.t1 AT3G54990 58.757 177 52 3 117 293 93 248 1.21e-43 158
MS.gene56970.t1 AT5G65510 46.341 246 99 7 150 379 170 398 1.57e-43 160
MS.gene56970.t1 AT5G65510 46.341 246 99 7 150 379 228 456 3.95e-43 160
MS.gene56970.t1 AT5G65510 46.341 246 99 7 150 379 228 456 3.95e-43 160
MS.gene56970.t1 AT5G10510 50.761 197 82 5 150 332 227 422 1.24e-41 157
MS.gene56970.t1 AT5G10510 50.761 197 82 5 150 332 227 422 1.24e-41 157
MS.gene56970.t1 AT5G10510 50.761 197 82 5 150 332 250 445 2.11e-41 156
MS.gene56970.t1 AT5G10510 50.761 197 82 5 150 332 265 460 2.22e-41 157
MS.gene56970.t1 AT5G10510 50.761 197 82 5 150 332 265 460 2.22e-41 157
MS.gene56970.t1 AT1G79700 51.596 188 77 3 144 320 43 227 1.29e-39 146
MS.gene56970.t1 AT5G65510 51.825 137 55 3 150 275 170 306 2.09e-38 143
MS.gene56970.t1 AT1G16060 50.000 192 85 2 126 306 31 222 1.58e-37 141
MS.gene56970.t1 AT5G10510 48.969 194 87 5 150 332 227 419 2.37e-37 145
MS.gene56970.t1 AT5G10510 44.700 217 85 6 150 332 265 480 7.94e-35 138
MS.gene56970.t1 AT1G79700 48.936 188 72 4 144 320 43 217 1.82e-32 126
MS.gene56970.t1 AT3G54320 54.074 135 61 1 177 310 33 167 3.05e-32 127
MS.gene56970.t1 AT3G54320 54.074 135 61 1 177 310 33 167 3.05e-32 127
MS.gene56970.t1 AT1G79700 51.316 152 70 2 172 322 5 153 2.83e-28 113
MS.gene56970.t1 AT1G16060 55.147 136 60 1 172 306 17 152 7.70e-27 110
MS.gene56970.t1 AT1G79700 51.034 145 67 2 179 322 6 147 5.35e-26 106
MS.gene56970.t1 AT2G41710 44.654 159 72 3 121 269 40 192 1.70e-24 106
MS.gene56970.t1 AT2G41710 44.654 159 72 3 121 269 40 192 1.93e-24 106
MS.gene56970.t1 AT2G41710 43.293 164 72 4 121 269 40 197 2.26e-22 100
MS.gene56970.t1 AT3G54320 58.696 92 37 1 220 310 1 92 7.10e-20 90.5
MS.gene56970.t1 AT2G41710 46.667 120 50 2 160 269 112 227 1.59e-19 91.7
MS.gene56970.t1 AT1G16060 57.955 88 36 1 220 306 1 88 9.42e-18 82.4
MS.gene56970.t1 AT1G16060 57.955 88 36 1 220 306 1 88 9.42e-18 82.4
MS.gene56970.t1 AT1G16060 57.955 88 36 1 220 306 1 88 9.42e-18 82.4
MS.gene56970.t1 AT1G16060 57.955 88 36 1 220 306 1 88 9.42e-18 82.4

Find 121 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTACCAGGTATGTTTATC+TGG 0.164819 5.2:-9002267 MS.gene56970:intron
TTGTGGAAAACAAGTGTATT+TGG 0.188508 5.2:-9003096 MS.gene56970:CDS
CACAATTTGGATTTGAGTTT+GGG 0.208325 5.2:-9001903 MS.gene56970:CDS
CCATTCCGCCAATTTGATTC+AGG 0.238529 5.2:+9001798 None:intergenic
CCACAATTTGGATTTGAGTT+TGG 0.249484 5.2:-9001904 MS.gene56970:CDS
AGCAATAATAATCAAGCATT+TGG 0.287575 5.2:-9001861 MS.gene56970:CDS
ATATATGCTGGGATCAAAAT+TGG 0.291483 5.2:+9002056 None:intergenic
TAACGCTGCAGACCACAATT+TGG 0.304218 5.2:-9001916 MS.gene56970:CDS
TATGATAATGAACTTAATTC+TGG 0.336630 5.2:-9002036 MS.gene56970:intron
GAAGTTGATGTTGATGAAAA+AGG 0.344176 5.2:-9003806 MS.gene56970:CDS
AAATCTATGCATTTCATTAG+TGG 0.352170 5.2:+9001538 None:intergenic
GCTCGAATGGGTCAATTCTT+AGG 0.356813 5.2:-9002434 MS.gene56970:CDS
ACATGGCACCTGAATCAAAT+TGG 0.356848 5.2:-9001806 MS.gene56970:CDS
AGAGCTGCAATTAAGTTTAG+AGG 0.359998 5.2:-9002731 MS.gene56970:CDS
TGAGGGTGTTGTTCAATCAT+AGG 0.361856 5.2:+9001500 None:intergenic
TGTGGAAAACAAGTGTATTT+GGG 0.366345 5.2:-9003095 MS.gene56970:intron
AAGATTGATGAAGGTGAGTT+TGG 0.369328 5.2:+9001567 None:intergenic
GAAGAAGAGGGTCTTATTTG+AGG 0.370931 5.2:+9000850 None:intergenic
TTACTTATACCACATGGTTT+AGG 0.372438 5.2:+9001647 None:intergenic
GATCAACAAAAGTGGCAATC+AGG 0.378821 5.2:-9000922 MS.gene56970:CDS
ACGGTGGTGGATTCTTCTTC+CGG 0.386725 5.2:-9003593 MS.gene56970:CDS
ACCTCTATACTGAGAACTTC+TGG 0.388412 5.2:+9003439 None:intergenic
TTCAATCATAGGTAACCTAT+AGG 0.401676 5.2:+9001511 None:intergenic
ACTAATGAAATGCATAGATT+TGG 0.402036 5.2:-9001536 MS.gene56970:CDS
GGCTTTGTAAGGGATGGATA+TGG 0.410468 5.2:-9001617 MS.gene56970:CDS
GTGGATTCTTCTTCCGGTGG+TGG 0.421531 5.2:-9003587 MS.gene56970:CDS
TCTTCTTCCGGTGGTGGTGG+TGG 0.422476 5.2:-9003581 MS.gene56970:CDS
GTCGATGGGAGTCTCATATA+TGG 0.422592 5.2:-9003394 MS.gene56970:intron
AAGTTCATTATCATATATGC+TGG 0.427130 5.2:+9002044 None:intergenic
CTATATTTAGAACTTCCTCT+TGG 0.428532 5.2:+9002491 None:intergenic
GCAATAATAATCAAGCATTT+GGG 0.440075 5.2:-9001860 MS.gene56970:CDS
ACACCAACCCAATGAGCTCT+TGG 0.445124 5.2:+9003542 None:intergenic
TCTTCCGGTGGTGGTGGTGG+TGG 0.447429 5.2:-9003578 MS.gene56970:CDS
ATGTTAAATCACTTCCGATT+CGG 0.449101 5.2:+9000956 None:intergenic
GCAACTGCTGCAGCATCATC+AGG 0.454716 5.2:-9000880 MS.gene56970:CDS
GGAAAATTGTGAAGCATTTG+AGG 0.458096 5.2:+9001482 None:intergenic
AAGAGGGTCTTATTTGAGGT+GGG 0.458874 5.2:+9000854 None:intergenic
GATTCTTCTTCCGGTGGTGG+TGG 0.465665 5.2:-9003584 MS.gene56970:CDS
TGCATAGATTTGGTCCCTAT+AGG 0.465996 5.2:-9001526 MS.gene56970:CDS
GTTTCGAGCAGCAGCAGCAA+TGG 0.467071 5.2:-9000982 MS.gene56970:CDS
AGCAGCAATGGAGGCCGAAT+CGG 0.467356 5.2:-9000970 MS.gene56970:CDS
GTAACATGGATGGCTTTGTA+AGG 0.467763 5.2:-9001628 MS.gene56970:CDS
TTATGAAGAGGATTTGAAGC+AGG 0.468923 5.2:-9002675 MS.gene56970:intron
GACCCTCTTCTTCTCAAGGT+TGG 0.474676 5.2:-9000840 MS.gene56970:CDS
TTTACCAGGTATGTTTATCT+GGG 0.478888 5.2:-9002266 MS.gene56970:intron
TCAGCAATAGTTATAGAAGA+TGG 0.485881 5.2:-9003749 MS.gene56970:CDS
GAAGAGGGTCTTATTTGAGG+TGG 0.487844 5.2:+9000853 None:intergenic
TCAATCATAGGTAACCTATA+GGG 0.489373 5.2:+9001512 None:intergenic
TGTTTGTGATGCAGGGATTG+TGG 0.491977 5.2:-9003113 MS.gene56970:intron
TTTCCAAGAGCTCATTGGGT+TGG 0.496635 5.2:-9003545 MS.gene56970:CDS
TGGAAGATGGGAAGCTCGAA+TGG 0.497218 5.2:-9002447 MS.gene56970:CDS
AGTACTCACATGAAAATTTG+AGG 0.498999 5.2:+9001448 None:intergenic
CCTCTACGACTCTTCTTCAT+CGG 0.503225 5.2:+9003470 None:intergenic
ATCATCTCAGAATCCTCTAC+AGG 0.512148 5.2:+9003620 None:intergenic
ATCAACAAAAGTGGCAATCA+GGG 0.513697 5.2:-9000921 MS.gene56970:CDS
TCCAGAAGTTCTCAGTATAG+AGG 0.521024 5.2:-9003440 MS.gene56970:CDS
CAATGTCTGATCAACAAAAG+TGG 0.521031 5.2:-9000930 MS.gene56970:CDS
GTACTCACATGAAAATTTGA+GGG 0.522748 5.2:+9001449 None:intergenic
TGAATCAGAAGGGTGTTCAA+TGG 0.523804 5.2:-9003843 MS.gene56970:CDS
AGAGGAAGTTCTAAATATAG+AGG 0.528159 5.2:-9002488 MS.gene56970:CDS
ATTAATGTTGTTGTTCAAGA+GGG 0.529810 5.2:+9000784 None:intergenic
ATAAGACCCTCTTCTTCTCA+AGG 0.535452 5.2:-9000844 MS.gene56970:CDS
TATTAAATGACAGAATCATC+AGG 0.536179 5.2:-9001939 MS.gene56970:intron
CCTGAATCAAATTGGCGGAA+TGG 0.543236 5.2:-9001798 MS.gene56970:CDS
ATGGATGGCTTTGTAAGGGA+TGG 0.546373 5.2:-9001623 MS.gene56970:CDS
GTTGCTAACAAATGTGGAGG+AGG 0.549490 5.2:+9000898 None:intergenic
GTACTACGACGACAAAGCAC+TGG 0.549832 5.2:-9002518 MS.gene56970:CDS
TGAGATGATAACAACGGTGG+TGG 0.552175 5.2:-9003606 MS.gene56970:CDS
AGTTTGGTTTAGCATCCTCA+AGG 0.553750 5.2:+9001583 None:intergenic
TTGTTCAAGAGGGTCTCATG+AGG 0.554656 5.2:+9000794 None:intergenic
AAAGCAGCAATTAAATGCAA+TGG 0.555160 5.2:-9002093 MS.gene56970:CDS
CTTTGCATAAATGTGGAAGA+TGG 0.555605 5.2:-9002460 MS.gene56970:CDS
GAATCAAATTGGCGGAATGG+TGG 0.556618 5.2:-9001795 MS.gene56970:CDS
TTTACAGAAGAACAGGTCGA+TGG 0.557696 5.2:-9003409 MS.gene56970:CDS
AAGAGGGTCTCATGAGGGTG+TGG 0.558814 5.2:+9000800 None:intergenic
GATGGATCGGAAGAAGAAGA+TGG 0.559991 5.2:-9003731 MS.gene56970:CDS
CAGCCAACCTTGAGAAGAAG+AGG 0.562311 5.2:+9000837 None:intergenic
CAATATTGAAGATTATGAAG+AGG 0.562600 5.2:-9002687 MS.gene56970:CDS
GAAAATTGTGAAGCATTTGA+GGG 0.565877 5.2:+9001483 None:intergenic
TACTGAGAACTTCTGGACCT+TGG 0.566561 5.2:+9003446 None:intergenic
AATTAAGTTTAGAGGAGTAG+AGG 0.566590 5.2:-9002723 MS.gene56970:CDS
TCGAGCAGCAGCAGCAATGG+AGG 0.568082 5.2:-9000979 MS.gene56970:CDS
AATTAATGTTGTTGTTCAAG+AGG 0.570734 5.2:+9000783 None:intergenic
TTACAGAAGAACAGGTCGAT+GGG 0.571585 5.2:-9003408 MS.gene56970:CDS
AGTTCATTATCATATATGCT+GGG 0.572364 5.2:+9002045 None:intergenic
TGTTCAAGAGGGTCTCATGA+GGG 0.574371 5.2:+9000795 None:intergenic
GGTTTAGGTAGTATATTCAC+AGG 0.579088 5.2:+9001662 None:intergenic
TAACATGGATGGCTTTGTAA+GGG 0.583711 5.2:-9001627 MS.gene56970:CDS
TTTGCATAAATGTGGAAGAT+GGG 0.585453 5.2:-9002459 MS.gene56970:CDS
AATAGTTATAGAAGATGGAT+CGG 0.593835 5.2:-9003744 MS.gene56970:CDS
TCAGAAGGGTGTTCAATGGA+AGG 0.596722 5.2:-9003839 MS.gene56970:CDS
TTAGATGAGCAATTTAACAA+AGG 0.599726 5.2:-9002555 MS.gene56970:intron
GGAAGATGGGAAGCTCGAAT+GGG 0.600193 5.2:-9002446 MS.gene56970:CDS
TGAATGACTCACCTGATCAG+AGG 0.601123 5.2:-9003874 MS.gene56970:CDS
GTGGTGGATTCTTCTTCCGG+TGG 0.601398 5.2:-9003590 MS.gene56970:CDS
TGGCACCTGAATCAAATTGG+CGG 0.606044 5.2:-9001803 MS.gene56970:CDS
GAATGGTGGAATCAGACCTA+AGG 0.607230 5.2:-9001781 MS.gene56970:intron
ACCATGTGGTATAAGTAACA+TGG 0.608746 5.2:-9001642 MS.gene56970:CDS
ACACAGCACATGCAGCTGCT+CGG 0.611926 5.2:-9002883 MS.gene56970:intron
CCAAACTCAAATCCAAATTG+TGG 0.612263 5.2:+9001904 None:intergenic
TCCATGTTACTTATACCACA+TGG 0.613151 5.2:+9001641 None:intergenic
TGTCACCACTGATCAATACA+TGG 0.617546 5.2:-9001823 MS.gene56970:CDS
ACACTGAGATTGAAGCTGCA+AGG 0.619137 5.2:-9002235 MS.gene56970:intron
AATTAAATGCAATGGCAAAG+AGG 0.621562 5.2:-9002085 MS.gene56970:CDS
ACAATTTGGATTTGAGTTTG+GGG 0.624070 5.2:-9001902 MS.gene56970:CDS
AAATTTGAGGGGTGAAGATG+TGG 0.624965 5.2:+9001461 None:intergenic
AGCCAACCTTGAGAAGAAGA+GGG 0.638756 5.2:+9000838 None:intergenic
GCAGCAGTTGCTAACAAATG+TGG 0.642916 5.2:+9000892 None:intergenic
GGTGTGACTTTGCATAAATG+TGG 0.644722 5.2:-9002467 MS.gene56970:CDS
ATGGAGAGAATGAAGCCTTG+AGG 0.645373 5.2:-9001598 MS.gene56970:CDS
TGGCAACTGAAGATTGATGA+AGG 0.653404 5.2:+9001558 None:intergenic
GCAGTTGCTAACAAATGTGG+AGG 0.654906 5.2:+9000895 None:intergenic
TGTGGTATAAGTAACATGGA+TGG 0.657805 5.2:-9001638 MS.gene56970:CDS
AGAAGAGTCGTAGAGGACCA+AGG 0.658620 5.2:-9003463 MS.gene56970:CDS
TACTCACATGAAAATTTGAG+GGG 0.661433 5.2:+9001450 None:intergenic
CCGATGAAGAAGAGTCGTAG+AGG 0.674974 5.2:-9003470 MS.gene56970:CDS
CAAAGCACTGGATTTCCAAG+AGG 0.688369 5.2:-9002506 MS.gene56970:CDS
AGGTGCCATGTATTGATCAG+TGG 0.699263 5.2:+9001818 None:intergenic
TTCTGAGATGATAACAACGG+TGG 0.706902 5.2:-9003609 MS.gene56970:CDS
AATATACTACCTAAACCATG+TGG 0.721947 5.2:-9001656 MS.gene56970:CDS
GGATTCTGAGATGATAACAA+CGG 0.722167 5.2:-9003612 MS.gene56970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATCTATTTCATTTAT+AGG + chr5.2:9002369-9002388 None:intergenic 10.0%
!! ATTAATCAATAGAATAAGAT+TGG + chr5.2:9002957-9002976 None:intergenic 15.0%
!! TATACTAAATATATGTATGT+AGG + chr5.2:9001889-9001908 None:intergenic 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG - chr5.2:9001849-9001868 MS.gene56970:CDS 15.0%
!!! ATATGAATTTGAATGTTTTT+TGG - chr5.2:9001543-9001562 MS.gene56970:CDS 15.0%
!! AAAAAGAGTAGTAAGATATT+TGG - chr5.2:9000987-9001006 MS.gene56970:intron 20.0%
!! AATTACATTACATTTACCTT+AGG + chr5.2:9002920-9002939 None:intergenic 20.0%
!! ATAACTAGCTAGTTATTATT+TGG - chr5.2:9001512-9001531 MS.gene56970:CDS 20.0%
!! ATATTGTGAAGAAGATTTAA+GGG - chr5.2:9001727-9001746 MS.gene56970:intron 20.0%
!! TACTTAAAATTGTACTTGTA+TGG - chr5.2:9003321-9003340 MS.gene56970:intron 20.0%
!! TATATTGTGAAGAAGATTTA+AGG - chr5.2:9001726-9001745 MS.gene56970:intron 20.0%
!! TTGAATTGAAATGATTATGA+AGG - chr5.2:9003678-9003697 MS.gene56970:CDS 20.0%
!!! ATAATAAAAATTGATTTGGG+AGG - chr5.2:9001685-9001704 MS.gene56970:intron 20.0%
!!! ATGAATATGTTCAATTTTAG+AGG - chr5.2:9003445-9003464 MS.gene56970:CDS 20.0%
!!! TAAGATATTTGGATTTTCAA+TGG - chr5.2:9000998-9001017 MS.gene56970:intron 20.0%
!!! TAATAAAAATTGATTTGGGA+GGG - chr5.2:9001686-9001705 MS.gene56970:intron 20.0%
!!! TATGATAATGAACTTAATTC+TGG - chr5.2:9002646-9002665 MS.gene56970:intron 20.0%
! AAATCTATGCATTTCATTAG+TGG + chr5.2:9003147-9003166 None:intergenic 25.0%
! AAGTTCATTATCATATATGC+TGG + chr5.2:9002641-9002660 None:intergenic 25.0%
! AATAGTTATAGAAGATGGAT+CGG - chr5.2:9000938-9000957 MS.gene56970:CDS 25.0%
! AATATATAAAGTGCATGCTA+GGG - chr5.2:9002525-9002544 MS.gene56970:CDS 25.0%
! ACTAATGAAATGCATAGATT+TGG - chr5.2:9003146-9003165 MS.gene56970:intron 25.0%
! AGCAATAATAATCAAGCATT+TGG - chr5.2:9002821-9002840 MS.gene56970:intron 25.0%
! AGTTCATTATCATATATGCT+GGG + chr5.2:9002640-9002659 None:intergenic 25.0%
! CAATATTGAAGATTATGAAG+AGG - chr5.2:9001995-9002014 MS.gene56970:intron 25.0%
! GACAATTTCAAGATATTGAA+AGG + chr5.2:9003408-9003427 None:intergenic 25.0%
! GCAATAATAATCAAGCATTT+GGG - chr5.2:9002822-9002841 MS.gene56970:intron 25.0%
! GGGAAAACAACAAATTAAAT+TGG + chr5.2:9002494-9002513 None:intergenic 25.0%
! TAATATATAAAGTGCATGCT+AGG - chr5.2:9002524-9002543 MS.gene56970:CDS 25.0%
! TATTAAATGACAGAATCATC+AGG - chr5.2:9002743-9002762 MS.gene56970:CDS 25.0%
! TATTCATTACATTAGTCCTT+TGG + chr5.2:9003432-9003451 None:intergenic 25.0%
! TTAGATGAGCAATTTAACAA+AGG - chr5.2:9002127-9002146 MS.gene56970:intron 25.0%
! TTTGAACACTAAAACATGTT+TGG - chr5.2:9003480-9003499 MS.gene56970:CDS 25.0%
!! AAATTTTGTCAATCAGAAAC+CGG - chr5.2:9001164-9001183 MS.gene56970:intron 25.0%
!! TTAGTTTGATTCAATTTACC+AGG - chr5.2:9002402-9002421 MS.gene56970:intron 25.0%
AAAGCAGCAATTAAATGCAA+TGG - chr5.2:9002589-9002608 MS.gene56970:intron 30.0%
AATATACTACCTAAACCATG+TGG - chr5.2:9003026-9003045 MS.gene56970:intron 30.0%
AATTAAATGCAATGGCAAAG+AGG - chr5.2:9002597-9002616 MS.gene56970:intron 30.0%
AATTAAGTTTAGAGGAGTAG+AGG - chr5.2:9001959-9001978 MS.gene56970:intron 30.0%
ACATATGTGGTAGTTAAAAG+TGG - chr5.2:9001641-9001660 MS.gene56970:CDS 30.0%
AGGAAAAACTATGAATCAGA+AGG - chr5.2:9000828-9000847 MS.gene56970:CDS 30.0%
AGTACTCACATGAAAATTTG+AGG + chr5.2:9003237-9003256 None:intergenic 30.0%
ATATATGCTGGGATCAAAAT+TGG + chr5.2:9002629-9002648 None:intergenic 30.0%
ATGTTAAATCACTTCCGATT+CGG + chr5.2:9003729-9003748 None:intergenic 30.0%
ATTTACCAGGTATGTTTATC+TGG - chr5.2:9002415-9002434 MS.gene56970:intron 30.0%
GCTAGTAAAGACTATTCTTT+AGG - chr5.2:9003534-9003553 MS.gene56970:CDS 30.0%
GGAAAAACTATGAATCAGAA+GGG - chr5.2:9000829-9000848 MS.gene56970:CDS 30.0%
GTACTCACATGAAAATTTGA+GGG + chr5.2:9003236-9003255 None:intergenic 30.0%
TACTCACATGAAAATTTGAG+GGG + chr5.2:9003235-9003254 None:intergenic 30.0%
TATCTTGAAATTGTCTCCAA+AGG - chr5.2:9003413-9003432 MS.gene56970:CDS 30.0%
TCAATCATAGGTAACCTATA+GGG + chr5.2:9003173-9003192 None:intergenic 30.0%
TCAGCAATAGTTATAGAAGA+TGG - chr5.2:9000933-9000952 MS.gene56970:CDS 30.0%
TGTAAGATCAGTTACATATG+TGG - chr5.2:9001628-9001647 MS.gene56970:CDS 30.0%
TGTGGAAAACAAGTGTATTT+GGG - chr5.2:9001587-9001606 MS.gene56970:CDS 30.0%
TTACTTATACCACATGGTTT+AGG + chr5.2:9003038-9003057 None:intergenic 30.0%
TTCAATCATAGGTAACCTAT+AGG + chr5.2:9003174-9003193 None:intergenic 30.0%
TTGTGGAAAACAAGTGTATT+TGG - chr5.2:9001586-9001605 MS.gene56970:CDS 30.0%
TTTACCAGGTATGTTTATCT+GGG - chr5.2:9002416-9002435 MS.gene56970:intron 30.0%
TTTGCATAAATGTGGAAGAT+GGG - chr5.2:9002223-9002242 MS.gene56970:intron 30.0%
! ACAATTTGGATTTGAGTTTG+GGG - chr5.2:9002780-9002799 MS.gene56970:intron 30.0%
! CACAATTTGGATTTGAGTTT+GGG - chr5.2:9002779-9002798 MS.gene56970:intron 30.0%
! CTATATTTAGAACTTCCTCT+TGG + chr5.2:9002194-9002213 None:intergenic 30.0%
! GAAAATTGTGAAGCATTTGA+GGG + chr5.2:9003202-9003221 None:intergenic 30.0%
! GATGTTGATGAAAAAGGAAA+AGG - chr5.2:9000882-9000901 MS.gene56970:CDS 30.0%
!! AGACTATTCTTTAGGACTAT+AGG - chr5.2:9003542-9003561 MS.gene56970:CDS 30.0%
!! AGAGGAAGTTCTAAATATAG+AGG - chr5.2:9002194-9002213 MS.gene56970:intron 30.0%
!! GAAGTTGATGTTGATGAAAA+AGG - chr5.2:9000876-9000895 MS.gene56970:CDS 30.0%
!! GCGATTCTTTAAAATATACC+TGG + chr5.2:9003509-9003528 None:intergenic 30.0%
!! TTGTGGCTCATTTTGTTTAA+GGG - chr5.2:9002558-9002577 MS.gene56970:intron 30.0%
!! TTTGTGGCTCATTTTGTTTA+AGG - chr5.2:9002557-9002576 MS.gene56970:intron 30.0%
!!! GCTAGGGTTTTAAATTTTTG+TGG - chr5.2:9002541-9002560 MS.gene56970:CDS 30.0%
!!! GTTACTTTTTACAGAAGAAC+AGG - chr5.2:9001266-9001285 MS.gene56970:intron 30.0%
!!! TACTTTCTCTTTTAGCTCAT+TGG - chr5.2:9003267-9003286 MS.gene56970:intron 30.0%
AAGATTGATGAAGGTGAGTT+TGG + chr5.2:9003118-9003137 None:intergenic 35.0%
ACCATGTGGTATAAGTAACA+TGG - chr5.2:9003040-9003059 MS.gene56970:intron 35.0%
ACGTGCGATATATCTATGTT+AGG - chr5.2:9001417-9001436 MS.gene56970:intron 35.0%
AGAGCTGCAATTAAGTTTAG+AGG - chr5.2:9001951-9001970 MS.gene56970:intron 35.0%
ATCAACAAAAGTGGCAATCA+GGG - chr5.2:9003761-9003780 MS.gene56970:CDS 35.0%
ATTTCAAACCTGCATTGCAT+TGG - chr5.2:9003611-9003630 MS.gene56970:CDS 35.0%
CAATGTCTGATCAACAAAAG+TGG - chr5.2:9003752-9003771 MS.gene56970:CDS 35.0%
CCAAACTCAAATCCAAATTG+TGG + chr5.2:9002781-9002800 None:intergenic 35.0%
CTAAAACATGTTTGGATTCC+AGG - chr5.2:9003488-9003507 MS.gene56970:CDS 35.0%
CTTTGCATAAATGTGGAAGA+TGG - chr5.2:9002222-9002241 MS.gene56970:intron 35.0%
GGTTTAGGTAGTATATTCAC+AGG + chr5.2:9003023-9003042 None:intergenic 35.0%
TATTCACAGGCTGAATTTCA+AGG + chr5.2:9003010-9003029 None:intergenic 35.0%
TGTGGTATAAGTAACATGGA+TGG - chr5.2:9003044-9003063 MS.gene56970:intron 35.0%
TTAAGGGATAACTGATGAGA+TGG - chr5.2:9001743-9001762 MS.gene56970:intron 35.0%
TTGTCTGGGTAAATTTGTGT+AGG - chr5.2:9001768-9001787 MS.gene56970:intron 35.0%
! AGCTTCAACTATTTTACCAC+CGG + chr5.2:9001186-9001205 None:intergenic 35.0%
! ATTTGAAGCAGGTGAGTTAT+GGG - chr5.2:9002018-9002037 MS.gene56970:intron 35.0%
! CCACAATTTGGATTTGAGTT+TGG - chr5.2:9002778-9002797 MS.gene56970:intron 35.0%
! GATGAAAAAGGAAAAGGTGT+TGG - chr5.2:9000888-9000907 MS.gene56970:CDS 35.0%
! GGAAAATTGTGAAGCATTTG+AGG + chr5.2:9003203-9003222 None:intergenic 35.0%
! TCATAGTTTTTCCTCTGATC+AGG + chr5.2:9000822-9000841 None:intergenic 35.0%
! TCCATGTTACTTATACCACA+TGG + chr5.2:9003044-9003063 None:intergenic 35.0%
! TTATGAAGAGGATTTGAAGC+AGG - chr5.2:9002007-9002026 MS.gene56970:intron 35.0%
! TTCTTTTCCAAGAGCTCATT+GGG - chr5.2:9001133-9001152 MS.gene56970:intron 35.0%
!! GGATTCTGAGATGATAACAA+CGG - chr5.2:9001070-9001089 MS.gene56970:intron 35.0%
!! TAACATGGATGGCTTTGTAA+GGG - chr5.2:9003055-9003074 MS.gene56970:intron 35.0%
!!! TAGACAGTTTTTTCCTGTAG+AGG - chr5.2:9001049-9001068 MS.gene56970:intron 35.0%
!!! TTGGTTTTGTTTGTGATGCA+GGG - chr5.2:9001562-9001581 MS.gene56970:CDS 35.0%
!!! TTTGGTTTTGTTTGTGATGC+AGG - chr5.2:9001561-9001580 MS.gene56970:CDS 35.0%
AAAAACTGTCTAGTGACAGG+TGG + chr5.2:9001041-9001060 None:intergenic 40.0%
AAATTTGAGGGGTGAAGATG+TGG + chr5.2:9003224-9003243 None:intergenic 40.0%
ACATGGCACCTGAATCAAAT+TGG - chr5.2:9002876-9002895 MS.gene56970:intron 40.0%
ACCTCTATACTGAGAACTTC+TGG + chr5.2:9001246-9001265 None:intergenic 40.0%
ATAAGACCCTCTTCTTCTCA+AGG - chr5.2:9003838-9003857 MS.gene56970:CDS 40.0%
ATAGACACGTCTGATCTTAG+AGG + chr5.2:9001353-9001372 None:intergenic 40.0%
ATCATCTCAGAATCCTCTAC+AGG + chr5.2:9001065-9001084 None:intergenic 40.0%
CAAACCCAGATAAACATACC+TGG + chr5.2:9002423-9002442 None:intergenic 40.0%
GATCAACAAAAGTGGCAATC+AGG - chr5.2:9003760-9003779 MS.gene56970:CDS 40.0%
GGAAAAAACTGTCTAGTGAC+AGG + chr5.2:9001044-9001063 None:intergenic 40.0%
GGTGTGACTTTGCATAAATG+TGG - chr5.2:9002215-9002234 MS.gene56970:intron 40.0%
TCCAGAAGTTCTCAGTATAG+AGG - chr5.2:9001242-9001261 MS.gene56970:intron 40.0%
TCTGGGTAAATTTGTGTAGG+TGG - chr5.2:9001771-9001790 MS.gene56970:intron 40.0%
TGGCAACTGAAGATTGATGA+AGG + chr5.2:9003127-9003146 None:intergenic 40.0%
TGTCACCACTGATCAATACA+TGG - chr5.2:9002859-9002878 MS.gene56970:intron 40.0%
TTACAGAAGAACAGGTCGAT+GGG - chr5.2:9001274-9001293 MS.gene56970:intron 40.0%
TTCGTGCTTCAGAGGTAATA+TGG + chr5.2:9001328-9001347 None:intergenic 40.0%
TTTACAGAAGAACAGGTCGA+TGG - chr5.2:9001273-9001292 MS.gene56970:intron 40.0%
! AAGGTTGGCTGCAGAAAAAT+GGG - chr5.2:9003857-9003876 MS.gene56970:CDS 40.0%
! AGTTTGGTTTAGCATCCTCA+AGG + chr5.2:9003102-9003121 None:intergenic 40.0%
! CTTCTTTTCCAAGAGCTCAT+TGG - chr5.2:9001132-9001151 MS.gene56970:intron 40.0%
! GATTTGAAGCAGGTGAGTTA+TGG - chr5.2:9002017-9002036 MS.gene56970:intron 40.0%
! TGCATAGATTTGGTCCCTAT+AGG - chr5.2:9003156-9003175 MS.gene56970:intron 40.0%
! TTTGAAGCAGGTGAGTTATG+GGG - chr5.2:9002019-9002038 MS.gene56970:intron 40.0%
! TTTTGTCAATCAGAAACCGG+TGG - chr5.2:9001167-9001186 MS.gene56970:intron 40.0%
!! AAGAGGGTCTTATTTGAGGT+GGG + chr5.2:9003831-9003850 None:intergenic 40.0%
!! GAAGAAGAGGGTCTTATTTG+AGG + chr5.2:9003835-9003854 None:intergenic 40.0%
!! GTAACATGGATGGCTTTGTA+AGG - chr5.2:9003054-9003073 MS.gene56970:intron 40.0%
!! TGAATCAGAAGGGTGTTCAA+TGG - chr5.2:9000839-9000858 MS.gene56970:CDS 40.0%
!! TGAGGGTGTTGTTCAATCAT+AGG + chr5.2:9003185-9003204 None:intergenic 40.0%
!! TTCTGAGATGATAACAACGG+TGG - chr5.2:9001073-9001092 MS.gene56970:intron 40.0%
!!! ACTGATGAGATGGTTTTGTC+TGG - chr5.2:9001753-9001772 MS.gene56970:intron 40.0%
!!! CTGATGAGATGGTTTTGTCT+GGG - chr5.2:9001754-9001773 MS.gene56970:intron 40.0%
ACACTGAGATTGAAGCTGCA+AGG - chr5.2:9002447-9002466 MS.gene56970:CDS 45.0%
AGCCAACCTTGAGAAGAAGA+GGG + chr5.2:9003847-9003866 None:intergenic 45.0%
ATGGAGAGAATGAAGCCTTG+AGG - chr5.2:9003084-9003103 MS.gene56970:intron 45.0%
CAATCTTGCCAATGCAATGC+AGG + chr5.2:9003622-9003641 None:intergenic 45.0%
CCATTCCGCCAATTTGATTC+AGG + chr5.2:9002887-9002906 None:intergenic 45.0%
CCTCTACGACTCTTCTTCAT+CGG + chr5.2:9001215-9001234 None:intergenic 45.0%
CCTGAATCAAATTGGCGGAA+TGG - chr5.2:9002884-9002903 MS.gene56970:CDS 45.0%
GAATCAAATTGGCGGAATGG+TGG - chr5.2:9002887-9002906 MS.gene56970:CDS 45.0%
GATGGATCGGAAGAAGAAGA+TGG - chr5.2:9000951-9000970 MS.gene56970:CDS 45.0%
GCAGCAGTTGCTAACAAATG+TGG + chr5.2:9003793-9003812 None:intergenic 45.0%
GCAGTTGCTAACAAATGTGG+AGG + chr5.2:9003790-9003809 None:intergenic 45.0%
GCTCGAATGGGTCAATTCTT+AGG - chr5.2:9002248-9002267 MS.gene56970:CDS 45.0%
GTCGATGGGAGTCTCATATA+TGG - chr5.2:9001288-9001307 MS.gene56970:intron 45.0%
GTTGCTAACAAATGTGGAGG+AGG + chr5.2:9003787-9003806 None:intergenic 45.0%
TAACGCTGCAGACCACAATT+TGG - chr5.2:9002766-9002785 MS.gene56970:intron 45.0%
TACTGAGAACTTCTGGACCT+TGG + chr5.2:9001239-9001258 None:intergenic 45.0%
TGAATGACTCACCTGATCAG+AGG - chr5.2:9000808-9000827 MS.gene56970:CDS 45.0%
TGAGATGATAACAACGGTGG+TGG - chr5.2:9001076-9001095 MS.gene56970:intron 45.0%
TGGCACCTGAATCAAATTGG+CGG - chr5.2:9002879-9002898 MS.gene56970:intron 45.0%
TGTTTGTGATGCAGGGATTG+TGG - chr5.2:9001569-9001588 MS.gene56970:CDS 45.0%
TTTCCAAGAGCTCATTGGGT+TGG - chr5.2:9001137-9001156 MS.gene56970:intron 45.0%
! AGGTGCCATGTATTGATCAG+TGG + chr5.2:9002867-9002886 None:intergenic 45.0%
! CAAGGTTGGCTGCAGAAAAA+TGG - chr5.2:9003856-9003875 MS.gene56970:CDS 45.0%
! GAATGGTGGAATCAGACCTA+AGG - chr5.2:9002901-9002920 MS.gene56970:intron 45.0%
! GGCTTTGTAAGGGATGGATA+TGG - chr5.2:9003065-9003084 MS.gene56970:intron 45.0%
!! AATTGATTTGGGAGGGAGAC+AGG - chr5.2:9001693-9001712 MS.gene56970:intron 45.0%
!! ATGGATGGCTTTGTAAGGGA+TGG - chr5.2:9003059-9003078 MS.gene56970:intron 45.0%
!! CAAAGCACTGGATTTCCAAG+AGG - chr5.2:9002176-9002195 MS.gene56970:intron 45.0%
!! GAAGAGGGTCTTATTTGAGG+TGG + chr5.2:9003832-9003851 None:intergenic 45.0%
!! TAGAGGTATTCGTGCTTCAG+AGG + chr5.2:9001336-9001355 None:intergenic 45.0%
!! TCAGAAGGGTGTTCAATGGA+AGG - chr5.2:9000843-9000862 MS.gene56970:CDS 45.0%
!! AATAATTAATTAAAAACTAT+AGG + chr5.2:9002075-9002094 None:intergenic 5.0%
!! TTATATATTATTAATTGAAA+GGG + chr5.2:9002514-9002533 None:intergenic 5.0%
!! TTTAATAATAAAAATTGATT+TGG - chr5.2:9001681-9001700 MS.gene56970:intron 5.0%
!! TTTATATATTATTAATTGAA+AGG + chr5.2:9002515-9002534 None:intergenic 5.0%
!!! AGTATATATAATAAATTTTT+TGG - chr5.2:9001903-9001922 MS.gene56970:CDS 5.0%
!!! TTAATAATAAAAATTGATTT+GGG - chr5.2:9001682-9001701 MS.gene56970:intron 5.0%
ACACCAACCCAATGAGCTCT+TGG + chr5.2:9001143-9001162 None:intergenic 50.0%
AGAAGAGTCGTAGAGGACCA+AGG - chr5.2:9001219-9001238 MS.gene56970:intron 50.0%
CAGCCAACCTTGAGAAGAAG+AGG + chr5.2:9003848-9003867 None:intergenic 50.0%
CCGATGAAGAAGAGTCGTAG+AGG - chr5.2:9001212-9001231 MS.gene56970:intron 50.0%
GACCCTCTTCTTCTCAAGGT+TGG - chr5.2:9003842-9003861 MS.gene56970:CDS 50.0%
GGAAGATGGGAAGCTCGAAT+GGG - chr5.2:9002236-9002255 MS.gene56970:CDS 50.0%
GTACTACGACGACAAAGCAC+TGG - chr5.2:9002164-9002183 MS.gene56970:intron 50.0%
TGGAAGATGGGAAGCTCGAA+TGG - chr5.2:9002235-9002254 MS.gene56970:intron 50.0%
!! ACGGTGGTGGATTCTTCTTC+CGG - chr5.2:9001089-9001108 MS.gene56970:intron 50.0%
AAGAGGGTCTCATGAGGGTG+TGG + chr5.2:9003885-9003904 None:intergenic 55.0%
ACACAGCACATGCAGCTGCT+CGG - chr5.2:9001799-9001818 MS.gene56970:CDS 55.0%
AGCAGCAATGGAGGCCGAAT+CGG - chr5.2:9003712-9003731 MS.gene56970:CDS 55.0%
GCAACTGCTGCAGCATCATC+AGG - chr5.2:9003802-9003821 MS.gene56970:CDS 55.0%
GTGGATTCTTCTTCCGGTGG+TGG - chr5.2:9001095-9001114 MS.gene56970:intron 55.0%
GTTTCGAGCAGCAGCAGCAA+TGG - chr5.2:9003700-9003719 MS.gene56970:CDS 55.0%
! GATTCTTCTTCCGGTGGTGG+TGG - chr5.2:9001098-9001117 MS.gene56970:intron 55.0%
!! GTGGTGGATTCTTCTTCCGG+TGG - chr5.2:9001092-9001111 MS.gene56970:intron 55.0%
ACTTCCACCACCACCACCAC+CGG + chr5.2:9001111-9001130 None:intergenic 60.0%
TCGAGCAGCAGCAGCAATGG+AGG - chr5.2:9003703-9003722 MS.gene56970:CDS 60.0%
!! TCTTCTTCCGGTGGTGGTGG+TGG - chr5.2:9001101-9001120 MS.gene56970:intron 60.0%
!! TCTTCCGGTGGTGGTGGTGG+TGG - chr5.2:9001104-9001123 MS.gene56970:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 9000798 9003906 9000798 ID=MS.gene56970
chr5.2 mRNA 9000798 9003906 9000798 ID=MS.gene56970.t1;Parent=MS.gene56970
chr5.2 exon 9003395 9003906 9003395 ID=MS.gene56970.t1.exon1;Parent=MS.gene56970.t1
chr5.2 CDS 9003395 9003906 9003395 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9003096 9003121 9003096 ID=MS.gene56970.t1.exon2;Parent=MS.gene56970.t1
chr5.2 CDS 9003096 9003121 9003096 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9002884 9002914 9002884 ID=MS.gene56970.t1.exon3;Parent=MS.gene56970.t1
chr5.2 CDS 9002884 9002914 9002884 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9002676 9002763 9002676 ID=MS.gene56970.t1.exon4;Parent=MS.gene56970.t1
chr5.2 CDS 9002676 9002763 9002676 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9002428 9002573 9002428 ID=MS.gene56970.t1.exon5;Parent=MS.gene56970.t1
chr5.2 CDS 9002428 9002573 9002428 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9002236 9002280 9002236 ID=MS.gene56970.t1.exon6;Parent=MS.gene56970.t1
chr5.2 CDS 9002236 9002280 9002236 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9002037 9002125 9002037 ID=MS.gene56970.t1.exon7;Parent=MS.gene56970.t1
chr5.2 CDS 9002037 9002125 9002037 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9001782 9001948 9001782 ID=MS.gene56970.t1.exon8;Parent=MS.gene56970.t1
chr5.2 CDS 9001782 9001948 9001782 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9001457 9001684 9001457 ID=MS.gene56970.t1.exon9;Parent=MS.gene56970.t1
chr5.2 CDS 9001457 9001684 9001457 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
chr5.2 exon 9000798 9001004 9000798 ID=MS.gene56970.t1.exon10;Parent=MS.gene56970.t1
chr5.2 CDS 9000798 9001004 9000798 ID=cds.MS.gene56970.t1;Parent=MS.gene56970.t1
Gene Sequence

>MS.gene56970

ATGTGGGATCTGAATGACTCACCTGATCAGAGGAAAAACTATGAATCAGAAGGGTGTTCAATGGAAGGTGATGAAGTTGAAGTTGATGTTGATGAAAAAGGAAAAGGTGTTGGATCTGTTTCAAATTCAAGTTCATCAGCAATAGTTATAGAAGATGGATCGGAAGAAGAAGATGGTAACATGATGAAGAAAAAGAGTAGTAAGATATTTGGATTTTCAATGGATGATAGTAGTGAGTGTCCACCTGTCACTAGACAGTTTTTTCCTGTAGAGGATTCTGAGATGATAACAACGGTGGTGGATTCTTCTTCCGGTGGTGGTGGTGGTGGAAGTTCTTCTTTTCCAAGAGCTCATTGGGTTGGTGTAAAATTTTGTCAATCAGAAACCGGTGGTAAAATAGTTGAAGCTTCACAACCGATGAAGAAGAGTCGTAGAGGACCAAGGTCCAGAAGTTCTCAGTATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGTTAGTATATTTTTTCCATATTACCTCTGAAGCACGAATACCTCTAAGATCAGACGTGTCTATGTGTCAGACACACTTGATGTCTGAATTCATTTTTTCAGATTATCACGTGCGATATATCTATGTTAGGATTGTGTCTGATGTTCGTGTCTGTGCTTCATAATAGTTAATAAATTATCAATAAATCTACAAAATTGAAAAAATAACTAGCTAGTTATTATTTGGTCATGAAAATATGAATTTGAATGTTTTTTGGTTTTGTTTGTGATGCAGGGATTGTGGAAAACAAGTGTATTTGGGTAAGTATTAATATTTTGATGTAAGATCAGTTACATATGTGGTAGTTAAAAGTGGCTAAAAAATTTGTTTTTTTTAATAATAAAAATTGATTTGGGAGGGAGACAGGAAGTAGTATATATATTGTGAAGAAGATTTAAGGGATAACTGATGAGATGGTTTTGTCTGGGTAAATTTGTGTAGGTGGATTTGACACAGCACATGCAGCTGCTCGGTGAGTCATCATTAATTTGATTCATATAAAATTTCATTCATTCTTTTATGGTAAAAATATACATACCTACATACATATATTTAGTATATATAATAAATTTTTTGGTGTTTCTATACTCAGTGCATATGATAGAGCTGCAATTAAGTTTAGAGGAGTAGAGGCTGATATAAATTTCAATATTGAAGATTATGAAGAGGATTTGAAGCAGGTGAGTTATGGGGAAGAATATTTTGAAAAATGTTTATTTATATCCTATAGTTTTTAATTAATTATTACTAATTTTTTTGTATCTTGAATTTTTGTGATTTAGATGAGCAATTTAACAAAGGAAGAATTTGTGCATGTACTACGACGACAAAGCACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTGACTTTGCATAAATGTGGAAGATGGGAAGCTCGAATGGGTCAATTCTTAGGAAAAAAGTATACATTTATATATCTCTTCTACTATAATTCTCATTTATTATATACTGTATTATTTTCTAAATGTTTGTTCATGCTGTTTTTATGTACCTATAAATGAAATAGATAATAAAAATTTAATTAGATTAGTTTGATTCAATTTACCAGGTATGTTTATCTGGGTTTGTTTGACACTGAGATTGAAGCTGCAAGGTATTATTGCTTTACTTTATTACCAATTTAATTTGTTGTTTTCCCTTTCAATTAATAATATATAAAGTGCATGCTAGGGTTTTAAATTTTTGTGGCTCATTTTGTTTAAGGGCATATGATAAAGCAGCAATTAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGGTAAGCACTTTCTAATTGTTTACATTTTAATTTTAATTATTCAATCACTTATACTTAGTTAATAATTAAATGCATTATTAAATGACAGAATCATCAGGTAACGCTGCAGACCACAATTTGGATTTGAGTTTGGGGAATTCAAGTTCTAAATGTAGCAATAATAATCAAGCATTTGGGAATCACAACACAAATGTCACCACTGATCAATACATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAGACCTAAGGTAAATGTAATGTAATTTAATTTAATATAGTCCAATCTTATTCTATTGATTAATTTTTCTTAATTAATCACAATTTAAATTTTACCTTGAAATTCAGCCTGTGAATATACTACCTAAACCATGTGGTATAAGTAACATGGATGGCTTTGTAAGGGATGGATATGGAGAGAATGAAGCCTTGAGGATGCTAAACCAAACTCACCTTCATCAATCTTCAGTTGCCACTAATGAAATGCATAGATTTGGTCCCTATAGGTTACCTATGATTGAACAACACCCTCAAATGCTTCACAATTTTCCACATCTTCACCCCTCAAATTTTCATGTGAGTACTTTTCTTCAATTACTTTCTCTTTTAGCTCATTGGTACTTGTTTTTTTTTACTCAAGTTCAGTTAGTACTTAAAATTGTACTTGTATGGTTGTGCAATTTAATTTTGTTTATTAATGCAATTTCAAATGATCATGATATTACTCAATGATCCTTTCAATATCTTGAAATTGTCTCCAAAGGACTAATGTAATGAATATGTTCAATTTTAGAGGTTAAATAGTAAATTTGAACACTAAAACATGTTTGGATTCCAGGTATATTTTAAAGAATCGCAGTGAGCTAGTAAAGACTATTCTTTAGGACTATAGGAATTTTAACAAAAATCAGTCATTGAAATTTTGTCAAATTCATCGTGATTTCAAACCTGCATTGCATTGGCAAGATTGAATTATTTTGTTAATTATGTGAATTGTTTTAATTTGTTGAATTGAAATGATTATGAAGGTTTCGAGCAGCAGCAGCAATGGAGGCCGAATCGGAAGTGATTTAACATTATCAATGTCTGATCAACAAAAGTGGCAATCAGGGCCTCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACCCTCATGAGACCCTCTTGA
Protein sequence

>MS.gene56970.t1

MWDLNDSPDQRKNYESEGCSMEGDEVEVDVDEKGKGVGSVSNSSSSAIVIEDGSEEEDGNMMKKKSSKIFGFSMDDSSECPPVTRQFFPVEDSEMITTVVDSSSGGGGGGSSSFPRAHWVGVKFCQSETGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKCSNNNQAFGNHNTNVTTDQYMAPESNWRNGGIRPKPVNILPKPCGISNMDGFVRDGYGENEALRMLNQTHLHQSSVATNEMHRFGPYRLPMIEQHPQMLHNFPHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQSGPPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS