Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56989.t1 | XP_024640279.1 | 95.9 | 1086 | 43 | 1 | 1 | 1086 | 1 | 1084 | 0.00E+00 | 2073.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56989.t1 | P93028 | 82.9 | 1025 | 175 | 0 | 62 | 1086 | 56 | 1080 | 0.0e+00 | 1764.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56989.t1 | A0A396HXC5 | 95.9 | 1086 | 43 | 1 | 1 | 1086 | 1 | 1084 | 0.0e+00 | 2073.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene006731 | MS.gene56989 | PPI |
MS.gene070758 | MS.gene56989 | PPI |
MS.gene070761 | MS.gene56989 | PPI |
MS.gene045436 | MS.gene56989 | PPI |
MS.gene070760 | MS.gene56989 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56989.t1 | MTR_5g072480 | 97.882 | 1086 | 20 | 1 | 1 | 1086 | 97 | 1179 | 0.0 | 2198 |
MS.gene56989.t1 | MTR_5g072480 | 97.882 | 1086 | 20 | 1 | 1 | 1086 | 98 | 1180 | 0.0 | 2198 |
MS.gene56989.t1 | MTR_5g072480 | 98.763 | 970 | 12 | 0 | 117 | 1086 | 27 | 996 | 0.0 | 1996 |
MS.gene56989.t1 | MTR_5g057095 | 85.390 | 705 | 58 | 3 | 287 | 991 | 1 | 660 | 0.0 | 1196 |
MS.gene56989.t1 | MTR_8g037355 | 40.761 | 184 | 101 | 2 | 496 | 679 | 6 | 181 | 2.47e-34 | 141 |
MS.gene56989.t1 | MTR_4g131690 | 32.850 | 207 | 111 | 7 | 489 | 678 | 37 | 232 | 1.95e-22 | 102 |
MS.gene56989.t1 | MTR_5g093580 | 28.571 | 168 | 108 | 5 | 468 | 632 | 57 | 215 | 1.17e-13 | 75.1 |
MS.gene56989.t1 | MTR_8g096740 | 34.395 | 157 | 97 | 3 | 83 | 233 | 15 | 171 | 1.67e-13 | 73.2 |
MS.gene56989.t1 | MTR_8g096740 | 34.395 | 157 | 97 | 3 | 83 | 233 | 71 | 227 | 2.96e-13 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56989.t1 | AT5G06460 | 81.915 | 1034 | 185 | 1 | 54 | 1085 | 43 | 1076 | 0.0 | 1797 |
MS.gene56989.t1 | AT2G30110 | 83.497 | 1018 | 168 | 0 | 69 | 1086 | 63 | 1080 | 0.0 | 1795 |
MS.gene56989.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 3.57e-33 | 137 |
MS.gene56989.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 4.54e-33 | 137 |
MS.gene56989.t1 | AT2G21470 | 39.474 | 190 | 107 | 2 | 490 | 679 | 4 | 185 | 7.31e-33 | 137 |
MS.gene56989.t1 | AT5G19180 | 31.100 | 209 | 116 | 7 | 487 | 678 | 34 | 231 | 2.90e-21 | 99.0 |
MS.gene56989.t1 | AT5G19180 | 30.918 | 207 | 115 | 7 | 489 | 678 | 36 | 231 | 3.00e-21 | 98.2 |
MS.gene56989.t1 | AT5G50680 | 33.121 | 157 | 99 | 2 | 83 | 233 | 13 | 169 | 6.77e-14 | 74.7 |
MS.gene56989.t1 | AT5G50580 | 33.121 | 157 | 99 | 2 | 83 | 233 | 13 | 169 | 6.77e-14 | 74.7 |
MS.gene56989.t1 | AT5G50680 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 7.19e-14 | 74.3 |
MS.gene56989.t1 | AT5G50580 | 32.704 | 159 | 97 | 3 | 83 | 233 | 13 | 169 | 7.19e-14 | 74.3 |
MS.gene56989.t1 | AT4G24940 | 31.210 | 157 | 102 | 2 | 83 | 233 | 13 | 169 | 7.17e-13 | 71.6 |
MS.gene56989.t1 | AT5G55130 | 31.447 | 159 | 90 | 5 | 480 | 632 | 71 | 216 | 7.09e-12 | 69.7 |
Find 262 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTTCATCCACTGTTTC+AGG | 0.145935 | 5.1:-55611574 | MS.gene56989:intron |
CAGATTCAAGAAGTGGTTTC+TGG | 0.150804 | 5.1:+55610360 | None:intergenic |
TTTAAAGAATCTTGCCTTAA+TGG | 0.185243 | 5.1:-55610684 | MS.gene56989:CDS |
GCATCGTAACGACTATTTAT+TGG | 0.188335 | 5.1:+55610797 | None:intergenic |
CTTGATTGGCTGAAGGAAAA+AGG | 0.223345 | 5.1:-55608898 | MS.gene56989:CDS |
CCTTCGCTAACTCTCTTTCT+TGG | 0.229281 | 5.1:+55616084 | None:intergenic |
GCGAGTAGCGTTCTTGTTTC+CGG | 0.235689 | 5.1:-55615790 | MS.gene56989:CDS |
CAGAAACCACTTCTTGAATC+TGG | 0.245740 | 5.1:-55610359 | MS.gene56989:CDS |
TGATGAGAGACTTGAGTTTC+AGG | 0.248535 | 5.1:-55612114 | MS.gene56989:CDS |
TCTATCGCCAGTAATATTAA+TGG | 0.258312 | 5.1:-55611738 | MS.gene56989:CDS |
ACAACTTCTGCCAACTTCAT+AGG | 0.264036 | 5.1:+55609663 | None:intergenic |
TTTATTAAAACTGAAGTTAG+AGG | 0.276986 | 5.1:-55612266 | MS.gene56989:CDS |
GTTCAAAACCTTTGGTTGTT+TGG | 0.277118 | 5.1:+55611935 | None:intergenic |
ATGTGTTTCATGATACCTTT+TGG | 0.278407 | 5.1:-55610460 | MS.gene56989:CDS |
GCCTTCAGCTTGTCAACTTC+AGG | 0.281009 | 5.1:+55609180 | None:intergenic |
GAAATTAGAAAGTTGTTCTT+TGG | 0.281989 | 5.1:+55614276 | None:intergenic |
TTTGATTGCGGCGTCGAGTA+TGG | 0.282748 | 5.1:-55615905 | MS.gene56989:CDS |
TGCTCAGGCACGGGATAATT+TGG | 0.285244 | 5.1:-55610087 | MS.gene56989:CDS |
TAAGTTCCCATTAATATTAC+TGG | 0.285590 | 5.1:+55611731 | None:intergenic |
AAAGTGTTTGTTGTTGGTTC+TGG | 0.291089 | 5.1:-55610725 | MS.gene56989:CDS |
AACAGCTCAACGGAAATAAA+TGG | 0.294987 | 5.1:+55608672 | None:intergenic |
CTCTTCCGTGATTGGAATAT+TGG | 0.300320 | 5.1:-55610581 | MS.gene56989:CDS |
AGAACAACTTTCTAATTTCC+AGG | 0.301087 | 5.1:-55614272 | MS.gene56989:intron |
AAGATTTGAGTTGGACTGTT+TGG | 0.301288 | 5.1:-55608963 | MS.gene56989:CDS |
AACTATGGTGCATATGAAAA+AGG | 0.303743 | 5.1:-55611975 | MS.gene56989:CDS |
TTAAAGAATCTTGCCTTAAT+GGG | 0.306714 | 5.1:-55610683 | MS.gene56989:CDS |
CGAGTAGCGTTCTTGTTTCC+GGG | 0.312828 | 5.1:-55615789 | MS.gene56989:CDS |
TGATGCTTGATGACCTTTGC+CGG | 0.329314 | 5.1:+55608985 | None:intergenic |
GGCCACTGGCCTTGTCTGTC+TGG | 0.330511 | 5.1:-55609106 | MS.gene56989:CDS |
TGTTGTTGGTTCTGGTGCAC+TGG | 0.338371 | 5.1:-55610717 | MS.gene56989:CDS |
TCATTGAGTGCTTCCCTTAG+AGG | 0.339380 | 5.1:+55611906 | None:intergenic |
TTGGTATCCCTACCCCTGAC+TGG | 0.344953 | 5.1:-55609695 | MS.gene56989:CDS |
CACATCGGTGCTTGTTTCTC+AGG | 0.346856 | 5.1:+55610260 | None:intergenic |
TTCCATGGCTGAGCCAGTTC+CGG | 0.347480 | 5.1:-55609004 | MS.gene56989:CDS |
AGATTTGAGTTGGACTGTTT+GGG | 0.350155 | 5.1:-55608962 | MS.gene56989:CDS |
GGCTTCTGTCAGTAAGCTTC+AGG | 0.352053 | 5.1:-55614344 | MS.gene56989:CDS |
GTTGTGTTCTCCGAAGTTCA+TGG | 0.352599 | 5.1:-55612080 | MS.gene56989:CDS |
GGCAGTTCCTCTTCCGTGAT+TGG | 0.352745 | 5.1:-55610589 | MS.gene56989:CDS |
TGATGATCTAATTGTTAAGT+TGG | 0.354367 | 5.1:-55609532 | MS.gene56989:CDS |
AACCCTATGGCTGCCATGTT+TGG | 0.355017 | 5.1:-55611636 | MS.gene56989:CDS |
GCAAAGAATCTTATTCTTGC+TGG | 0.359597 | 5.1:-55614469 | MS.gene56989:CDS |
CAAATCTGCAACCAGGCTTC+AGG | 0.360479 | 5.1:-55609497 | MS.gene56989:CDS |
CTGAAGGCCAAGTTTATTGC+TGG | 0.364675 | 5.1:-55609165 | MS.gene56989:CDS |
CTCTCAGGGAGCTTCTTGAT+TGG | 0.364777 | 5.1:-55608912 | MS.gene56989:CDS |
TTGATGACCTTTGCCGGAAC+TGG | 0.366564 | 5.1:+55608991 | None:intergenic |
GCGGCGTCGAGTATGGCTTT+TGG | 0.370489 | 5.1:-55615898 | MS.gene56989:CDS |
TTCATATGCACCATAGTTTG+TGG | 0.370748 | 5.1:+55611980 | None:intergenic |
CTATCGCCAGTAATATTAAT+GGG | 0.371055 | 5.1:-55611737 | MS.gene56989:CDS |
CTTCTACAGCAATTTGCCTT+TGG | 0.378864 | 5.1:-55611675 | MS.gene56989:CDS |
TCCTTCTTTGGCTGAAAGTC+AGG | 0.379261 | 5.1:+55609624 | None:intergenic |
TCTACTGCATCTAGCATTCC+AGG | 0.380310 | 5.1:-55611835 | MS.gene56989:CDS |
CTTCTTGAATCTGGAACTCT+TGG | 0.385963 | 5.1:-55610350 | MS.gene56989:CDS |
GTTTCCGGGATGCGAGGACT+TGG | 0.393100 | 5.1:-55615775 | MS.gene56989:CDS |
TCCACAAGAAACTCCCATTA+AGG | 0.397211 | 5.1:+55610670 | None:intergenic |
AGCAGGCAGCTTGCTGTGTA+TGG | 0.400305 | 5.1:-55615838 | MS.gene56989:CDS |
CGTTTCGGTGCAGACCAAAA+TGG | 0.402314 | 5.1:+55609804 | None:intergenic |
GAAGAAGACACCACAAACTA+TGG | 0.406363 | 5.1:-55611990 | MS.gene56989:CDS |
TAGAGGCTGCCATCAGAAAC+TGG | 0.408365 | 5.1:+55609736 | None:intergenic |
GATAAGTTCATTTCTGAGAT+AGG | 0.408784 | 5.1:-55611807 | MS.gene56989:CDS |
TACCATATGGACGTGATAGC+TGG | 0.413160 | 5.1:-55609237 | MS.gene56989:CDS |
AAGTATGCATTTACTTCAGC+TGG | 0.413743 | 5.1:+55610155 | None:intergenic |
CTAAGTTGGCAAAGGTGTTT+CGG | 0.417033 | 5.1:+55609040 | None:intergenic |
GGCAAATTGCTGTAGAAGCT+TGG | 0.417666 | 5.1:+55611680 | None:intergenic |
TTGGGCTCGATCTGAGTTTG+AGG | 0.418168 | 5.1:-55610195 | MS.gene56989:CDS |
TCTGGAGTTGTACAAAGCTT+TGG | 0.419529 | 5.1:-55609088 | MS.gene56989:CDS |
GGTTTGAAGTTCAAAACCTT+TGG | 0.419591 | 5.1:+55611927 | None:intergenic |
ACATTGACCACTGCTTGACT+TGG | 0.423197 | 5.1:-55610214 | MS.gene56989:CDS |
GCAGTTGAGGTTGCAATCGC+TGG | 0.425831 | 5.1:+55609132 | None:intergenic |
ATGAAGGGACTGTAGAGTTA+TGG | 0.426761 | 5.1:-55614423 | MS.gene56989:CDS |
TGAAGGGACTGTAGAGTTAT+GGG | 0.430566 | 5.1:-55614422 | MS.gene56989:CDS |
GTTGTTGGTTCTGGTGCACT+GGG | 0.430831 | 5.1:-55610716 | MS.gene56989:CDS |
CTAGTACTGGAGCTCCATTT+TGG | 0.431384 | 5.1:-55609818 | MS.gene56989:CDS |
ATACTACGCGCAGAAACATT+TGG | 0.432473 | 5.1:-55609714 | MS.gene56989:CDS |
TTAGGTGGGGAATGACCATC+TGG | 0.432952 | 5.1:+55610312 | None:intergenic |
GAGGTTGTCAAAGCATGCTC+TGG | 0.433486 | 5.1:-55611597 | MS.gene56989:CDS |
GTATGAAGGGATTTCCATCT+TGG | 0.433617 | 5.1:+55608765 | None:intergenic |
GCAAATTGCTGTAGAAGCTT+GGG | 0.434219 | 5.1:+55611681 | None:intergenic |
TCTCAGAAATGAACTTATCC+AGG | 0.437517 | 5.1:+55611811 | None:intergenic |
AGCAATTTGCCTTTGGTGCT+AGG | 0.439721 | 5.1:-55611668 | MS.gene56989:CDS |
CAGCAACTGTGGACTTCGCC+TGG | 0.443178 | 5.1:+55610558 | None:intergenic |
AGTGGACGAGGGAACCGTTT+CGG | 0.444508 | 5.1:+55609789 | None:intergenic |
GCCTTAATGGGAGTTTCTTG+TGG | 0.450723 | 5.1:-55610671 | MS.gene56989:CDS |
ATAGGCCGCTTCCCCGTCGC+TGG | 0.451628 | 5.1:-55611789 | MS.gene56989:CDS |
TAAAAGACAATCCTACTCTC+AGG | 0.451668 | 5.1:-55608927 | MS.gene56989:CDS |
GGAGCGCGTTCTTGAATGCT+TGG | 0.453147 | 5.1:-55610066 | MS.gene56989:CDS |
TGGGCTCGATCTGAGTTTGA+GGG | 0.454796 | 5.1:-55610194 | MS.gene56989:CDS |
TCTGTAACCTTGCACGATGA+AGG | 0.460758 | 5.1:-55614439 | MS.gene56989:CDS |
CCGTGATTGGAATATTGGCC+AGG | 0.460888 | 5.1:-55610576 | MS.gene56989:CDS |
CAACTTCTGCCAACTTCATA+GGG | 0.461246 | 5.1:+55609664 | None:intergenic |
GATGCTAAAGTGTTTGTTGT+TGG | 0.462634 | 5.1:-55610731 | MS.gene56989:CDS |
CGAGGACTTGGTGCTGAGAT+TGG | 0.465948 | 5.1:-55615763 | MS.gene56989:intron |
GCCATGTTTGGTGGAATTGT+AGG | 0.467732 | 5.1:-55611624 | MS.gene56989:CDS |
GAGCTTCAATATTCAGTTGA+GGG | 0.468390 | 5.1:+55610513 | None:intergenic |
TCCATCCGCTCTTTGTGCCT+AGG | 0.470744 | 5.1:+55608820 | None:intergenic |
CGACGCCGCAATCAAATTCC+CGG | 0.471003 | 5.1:+55615912 | None:intergenic |
GCAATTTGCCTTTGGTGCTA+GGG | 0.471795 | 5.1:-55611667 | MS.gene56989:CDS |
AAAGAGAGGCAGTGCTAAGT+TGG | 0.472731 | 5.1:+55609026 | None:intergenic |
TCTTCCTCTGAACCAGCGAC+GGG | 0.473013 | 5.1:+55611777 | None:intergenic |
AGTAATATTAATGGGAACTT+AGG | 0.473212 | 5.1:-55611729 | MS.gene56989:CDS |
GACGGAGAGGAACCACATAC+TGG | 0.474327 | 5.1:-55612188 | MS.gene56989:CDS |
GAAACATGCTATTGAAAAGC+AGG | 0.474711 | 5.1:+55608842 | None:intergenic |
GGAAATAAATGGATACTTGA+GGG | 0.475547 | 5.1:+55608683 | None:intergenic |
GAGGAGAACTGCAGTGGACG+AGG | 0.475825 | 5.1:+55609777 | None:intergenic |
TATACCTTCTCAAACTGGAT+TGG | 0.476277 | 5.1:+55609468 | None:intergenic |
ATTGGCTTCATCCTGAAGCC+TGG | 0.476395 | 5.1:+55609486 | None:intergenic |
AAATGAACTTATCCAGGGCC+TGG | 0.478545 | 5.1:+55611817 | None:intergenic |
GAGGATGCTGCAACTAGTAC+TGG | 0.479266 | 5.1:-55609831 | MS.gene56989:CDS |
GAAGTGGTTTCTGGAAATAC+AGG | 0.480601 | 5.1:+55610369 | None:intergenic |
CGCTGGTGATGCTCAGGCAC+GGG | 0.482562 | 5.1:-55610096 | MS.gene56989:CDS |
TTGATGAGGATCTGCATAGC+AGG | 0.483115 | 5.1:-55615855 | MS.gene56989:CDS |
TTTGAACTTCAAACCTCTAA+GGG | 0.484104 | 5.1:-55611919 | MS.gene56989:CDS |
GCCCAGCTATCACGTCCATA+TGG | 0.486722 | 5.1:+55609235 | None:intergenic |
TGATGATACAAACTACCATA+TGG | 0.487832 | 5.1:-55609250 | MS.gene56989:CDS |
ATCAGAAACTGGAGATGACT+TGG | 0.488848 | 5.1:+55609747 | None:intergenic |
CACAGAAGCAGTAGAGAGAC+TGG | 0.489594 | 5.1:+55609572 | None:intergenic |
TCAAGCATCAAGATTTGAGT+TGG | 0.490518 | 5.1:-55608972 | MS.gene56989:CDS |
CAGTCTCTCTACTGCTTCTG+TGG | 0.491243 | 5.1:-55609571 | MS.gene56989:CDS |
GGAGTTTCTTGTGGAGGTCA+AGG | 0.491274 | 5.1:-55610662 | MS.gene56989:CDS |
GCATCTAGCATTCCAGGCCC+TGG | 0.491544 | 5.1:-55611829 | MS.gene56989:CDS |
CAAGCAAACATACTTAAGTC+TGG | 0.492461 | 5.1:+55610001 | None:intergenic |
CCCCACCTAACAGAAAACTA+TGG | 0.494247 | 5.1:-55610299 | MS.gene56989:CDS |
AGCAAGGGATATTGCCAAGA+TGG | 0.494470 | 5.1:-55608779 | MS.gene56989:CDS |
GAAGAACGCTGGTGATGCTC+AGG | 0.496933 | 5.1:-55610102 | MS.gene56989:CDS |
TAGAGAAGAGTAACTTAAGC+AGG | 0.497531 | 5.1:-55610610 | MS.gene56989:CDS |
CAACTCAGGTTCGGTTAAGA+AGG | 0.499392 | 5.1:-55616007 | MS.gene56989:CDS |
ATTAGTATATTCACTTGGGT+TGG | 0.501780 | 5.1:+55610130 | None:intergenic |
TTTACTGTTGTTGATGTTGA+CGG | 0.502308 | 5.1:-55612206 | MS.gene56989:CDS |
CCACCAAACATGGCAGCCAT+AGG | 0.502484 | 5.1:+55611633 | None:intergenic |
TGTTTCTGCGCGTAGTATAG+AGG | 0.504143 | 5.1:+55609719 | None:intergenic |
GTACTAGTTGCAGCATCCTC+AGG | 0.507340 | 5.1:+55609834 | None:intergenic |
TTACTGTTGCTGTTGTTGAT+CGG | 0.509874 | 5.1:+55616042 | None:intergenic |
AGAGTTCCAGATTCAAGAAG+TGG | 0.510671 | 5.1:+55610353 | None:intergenic |
TTCGGTTAAGAAGGCGCGGA+TGG | 0.513188 | 5.1:-55615998 | MS.gene56989:CDS |
ACCTCAACTGCTATGGCCAC+TGG | 0.513534 | 5.1:-55609120 | MS.gene56989:CDS |
TTTCTCAGGTGGATCTCTTG+AGG | 0.516110 | 5.1:+55610274 | None:intergenic |
GGCTGAGCCAGTTCCGGCAA+AGG | 0.516192 | 5.1:-55608998 | MS.gene56989:CDS |
CCTATGGCTGCCATGTTTGG+TGG | 0.517240 | 5.1:-55611633 | MS.gene56989:CDS |
TTTAAATCATTAGGATGCAA+TGG | 0.518509 | 5.1:+55610821 | None:intergenic |
CTGAACCAGCGACGGGGAAG+CGG | 0.519190 | 5.1:+55611784 | None:intergenic |
GAACTTAGGTGATGGAAGGT+TGG | 0.522752 | 5.1:-55611715 | MS.gene56989:CDS |
TCGCTAAGAAGAAATTCGCC+TGG | 0.524799 | 5.1:+55611882 | None:intergenic |
CATTGACCACTGCTTGACTT+GGG | 0.525222 | 5.1:-55610213 | MS.gene56989:CDS |
GTTGGACTGTTTGGGACAGA+TGG | 0.525287 | 5.1:-55608954 | MS.gene56989:CDS |
AGCAGGGTTGTCATTGCTGA+TGG | 0.525509 | 5.1:+55612154 | None:intergenic |
TCTATGTGACGACGGTATGA+AGG | 0.525866 | 5.1:+55608751 | None:intergenic |
AGGGAAGCACTCAATGATCC+AGG | 0.528850 | 5.1:-55611900 | MS.gene56989:CDS |
TGGTATCCCTACCCCTGACT+GGG | 0.529089 | 5.1:-55609694 | MS.gene56989:CDS |
CTTCCCCGTCGCTGGTTCAG+AGG | 0.532088 | 5.1:-55611781 | MS.gene56989:CDS |
GACGCAATTATTCCAGTATG+TGG | 0.534184 | 5.1:+55612176 | None:intergenic |
TTGCATTAGTATATTCACTT+GGG | 0.538332 | 5.1:+55610126 | None:intergenic |
TGTACAAAGCTTTGGATGGA+GGG | 0.538756 | 5.1:-55609080 | MS.gene56989:CDS |
CGGAAATAAATGGATACTTG+AGG | 0.538825 | 5.1:+55608682 | None:intergenic |
GGCAGCTTGCTGTGTATGGT+AGG | 0.539353 | 5.1:-55615834 | MS.gene56989:CDS |
ATTGCATTAGTATATTCACT+TGG | 0.541152 | 5.1:+55610125 | None:intergenic |
GCCAGTGGCCATAGCAGTTG+AGG | 0.541357 | 5.1:+55609119 | None:intergenic |
ACCTGACTTTCAGCCAAAGA+AGG | 0.541490 | 5.1:-55609625 | MS.gene56989:CDS |
ATGGGAACTTAGGTGATGGA+AGG | 0.543924 | 5.1:-55611719 | MS.gene56989:CDS |
TGAAGGCCAAGTTTATTGCT+GGG | 0.544977 | 5.1:-55609164 | MS.gene56989:CDS |
AGCACCAAGTCCTCGCATCC+CGG | 0.545712 | 5.1:+55615771 | None:intergenic |
ACCATATGGACGTGATAGCT+GGG | 0.545943 | 5.1:-55609236 | MS.gene56989:CDS |
CGTTCTTGAATGCTTGGACA+AGG | 0.549794 | 5.1:-55610060 | MS.gene56989:CDS |
CAATATTCCAATCACGGAAG+AGG | 0.549876 | 5.1:+55610582 | None:intergenic |
AACATACTTAAGTCTGGCCC+AGG | 0.550964 | 5.1:+55610007 | None:intergenic |
TTAATGGGAGTTTCTTGTGG+AGG | 0.551450 | 5.1:-55610668 | MS.gene56989:CDS |
TGCCGGAACTGGCTCAGCCA+TGG | 0.552669 | 5.1:+55609002 | None:intergenic |
AGCTTTCTCAAGACTGACTT+CGG | 0.552709 | 5.1:+55612334 | None:intergenic |
CTCTTTCATACCATGAACTT+CGG | 0.552721 | 5.1:+55612070 | None:intergenic |
GATCCGCCCAGCAATAAACT+TGG | 0.553499 | 5.1:+55609158 | None:intergenic |
ATCTTCCTCTGAACCAGCGA+CGG | 0.553654 | 5.1:+55611776 | None:intergenic |
AATGCTTATAGTATTTCTTG+TGG | 0.555880 | 5.1:-55608871 | MS.gene56989:CDS |
CTGTAACCTTGCACGATGAA+GGG | 0.556726 | 5.1:-55614438 | MS.gene56989:CDS |
ATTAATGGGAACTTAGGTGA+TGG | 0.556937 | 5.1:-55611723 | MS.gene56989:CDS |
TCCTACAATTCCACCAAACA+TGG | 0.558580 | 5.1:+55611623 | None:intergenic |
CACCAAACATGGCAGCCATA+GGG | 0.558852 | 5.1:+55611634 | None:intergenic |
TACAGTCCCTTCATCGTGCA+AGG | 0.559502 | 5.1:+55614432 | None:intergenic |
GGATGGAGGGCACAAACTTG+AGG | 0.559895 | 5.1:-55609067 | MS.gene56989:CDS |
GATTGCAACCTCAACTGCTA+TGG | 0.560816 | 5.1:-55609127 | MS.gene56989:CDS |
ATCGGTGCTTGTTTCTCAGG+TGG | 0.560877 | 5.1:+55610263 | None:intergenic |
TAACAGTAACAACTCAGGTT+CGG | 0.560943 | 5.1:-55616016 | MS.gene56989:CDS |
TTGTACAAAGCTTTGGATGG+AGG | 0.561407 | 5.1:-55609081 | MS.gene56989:CDS |
GAGTTGTACAAAGCTTTGGA+TGG | 0.564658 | 5.1:-55609084 | MS.gene56989:CDS |
GGAGCTTCTTGATTGGCTGA+AGG | 0.564907 | 5.1:-55608905 | MS.gene56989:CDS |
GATCCTCATCAATCTCCTGC+GGG | 0.565030 | 5.1:+55615866 | None:intergenic |
CAATACTGCCCTAGCACCAA+AGG | 0.568311 | 5.1:+55611659 | None:intergenic |
TTGTTAAGTTGGAGAGATTG+CGG | 0.569445 | 5.1:-55609521 | MS.gene56989:CDS |
ATATCAAATACCTGAAACAG+TGG | 0.571836 | 5.1:+55611564 | None:intergenic |
ACGCTGGTGATGCTCAGGCA+CGG | 0.571857 | 5.1:-55610097 | MS.gene56989:CDS |
TCAACGCAAGATACTACAGC+AGG | 0.572004 | 5.1:+55612137 | None:intergenic |
CTGGAGATGACTTGGATCAG+AGG | 0.578510 | 5.1:+55609755 | None:intergenic |
GAGTTTCTTGTGGAGGTCAA+GGG | 0.579278 | 5.1:-55610661 | MS.gene56989:CDS |
CTATGTGACGACGGTATGAA+GGG | 0.583308 | 5.1:+55608752 | None:intergenic |
GGCGATAACAGTAACAGTAC+CGG | 0.583723 | 5.1:-55615931 | MS.gene56989:CDS |
AGGTTGTCAAAGCATGCTCT+GGG | 0.583903 | 5.1:-55611596 | MS.gene56989:CDS |
AAAAGACAATCCTACTCTCA+GGG | 0.588461 | 5.1:-55608926 | MS.gene56989:CDS |
AGGCAGTGCTAAGTTGGCAA+AGG | 0.588629 | 5.1:+55609032 | None:intergenic |
AAGTCATCTCCAGTTTCTGA+TGG | 0.589571 | 5.1:-55609745 | MS.gene56989:CDS |
TCCTAGGCACAAAGAGCGGA+TGG | 0.590716 | 5.1:-55608821 | MS.gene56989:CDS |
AAAAGTTGTAGATTTAGCAA+GGG | 0.591947 | 5.1:-55608794 | MS.gene56989:CDS |
GAGAGACTTGAGTTTCAGGA+TGG | 0.593512 | 5.1:-55612110 | MS.gene56989:CDS |
TCGGTTAAGAAGGCGCGGAT+GGG | 0.595970 | 5.1:-55615997 | MS.gene56989:CDS |
CCTGGCCAATATTCCAATCA+CGG | 0.596475 | 5.1:+55610576 | None:intergenic |
TGGTGGAATTGTAGGACAAG+AGG | 0.596531 | 5.1:-55611616 | MS.gene56989:CDS |
GCAGCTTGCTGTGTATGGTA+GGG | 0.598555 | 5.1:-55615833 | MS.gene56989:CDS |
CACACAGGCCAAACAACCAA+AGG | 0.598610 | 5.1:-55611943 | MS.gene56989:CDS |
TCGTCACATAGATGTTGTTG+TGG | 0.599771 | 5.1:-55608740 | MS.gene56989:CDS |
TTAGGATGCAATGGTTCTGT+CGG | 0.600075 | 5.1:+55610830 | None:intergenic |
AACAGTAACAGTAACAACTC+AGG | 0.601183 | 5.1:-55616021 | MS.gene56989:CDS |
AGCTAAATGCAATACCCAGA+TGG | 0.602057 | 5.1:-55610327 | MS.gene56989:CDS |
AGAGCTTCAATATTCAGTTG+AGG | 0.602807 | 5.1:+55610512 | None:intergenic |
ATGCTAGATGCAGTAGAGGT+GGG | 0.606083 | 5.1:+55611841 | None:intergenic |
TCAAGAAGCTCCCTGAGAGT+AGG | 0.607687 | 5.1:+55608916 | None:intergenic |
AATGCTAGATGCAGTAGAGG+TGG | 0.608189 | 5.1:+55611840 | None:intergenic |
TAGGGCAGTATTGAACCCTA+TGG | 0.608225 | 5.1:-55611649 | MS.gene56989:CDS |
TGTATGGTAGGGAGACTATG+AGG | 0.608486 | 5.1:-55615822 | MS.gene56989:CDS |
AGATGTTGTTGTGGCTTGTG+AGG | 0.611793 | 5.1:-55608731 | MS.gene56989:CDS |
GTTCTTGTTTCCGGGATGCG+AGG | 0.612931 | 5.1:-55615781 | MS.gene56989:CDS |
TCCTGAAGTTGACAAGCTGA+AGG | 0.613866 | 5.1:-55609181 | MS.gene56989:CDS |
CTCAGAAATGAACTTATCCA+GGG | 0.613872 | 5.1:+55611812 | None:intergenic |
GGTATGAAAGAGTTGAATGA+CGG | 0.614542 | 5.1:-55612059 | MS.gene56989:CDS |
CCAAGAAAGAGAGTTAGCGA+AGG | 0.614686 | 5.1:-55616084 | MS.gene56989:CDS |
TGGAATGCTAGATGCAGTAG+AGG | 0.618576 | 5.1:+55611837 | None:intergenic |
AGCAGCTGTTGCAGCAACTG+TGG | 0.622684 | 5.1:+55610547 | None:intergenic |
AGATCCTCATCAATCTCCTG+CGG | 0.623454 | 5.1:+55615865 | None:intergenic |
GTAATTGCGTGCTCTCATGT+TGG | 0.625010 | 5.1:+55609209 | None:intergenic |
GACAAGAGTTTCAGTAGCGG+CGG | 0.626725 | 5.1:-55615952 | MS.gene56989:CDS |
TCAGAGGAGGAGAACTGCAG+TGG | 0.627364 | 5.1:+55609771 | None:intergenic |
ACTAATGCAATGAAGAACGC+TGG | 0.628383 | 5.1:-55610113 | MS.gene56989:CDS |
TTGCGGTCAAATCTGCAACC+AGG | 0.628501 | 5.1:-55609504 | MS.gene56989:CDS |
ATCGAGCCCAAGTCAAGCAG+TGG | 0.639227 | 5.1:+55610207 | None:intergenic |
GAAGCCAATCCAGTTTGAGA+AGG | 0.640400 | 5.1:-55609472 | MS.gene56989:intron |
AAAAGGTGGTATTGTCACAC+AGG | 0.640867 | 5.1:-55611958 | MS.gene56989:CDS |
TATAAGCTAACTGCTTCACT+CGG | 0.644091 | 5.1:+55609862 | None:intergenic |
AGGAGAACTGCAGTGGACGA+GGG | 0.645043 | 5.1:+55609778 | None:intergenic |
CAGTACCGGGAATTTGATTG+CGG | 0.646358 | 5.1:-55615917 | MS.gene56989:CDS |
GCGATAACAGTAACAGTACC+GGG | 0.648141 | 5.1:-55615930 | MS.gene56989:CDS |
TTTCAGTTTCAGAGCTAACA+CGG | 0.652120 | 5.1:+55610483 | None:intergenic |
TGTCAAGCTTAGTACAAGCA+CGG | 0.654017 | 5.1:+55614309 | None:intergenic |
AGGCCCAAAATCACAAAACA+CGG | 0.655204 | 5.1:+55612232 | None:intergenic |
GAGATGACTTGGATCAGAGG+AGG | 0.659455 | 5.1:+55609758 | None:intergenic |
GGCTCAGCCATGGAAAAGAG+AGG | 0.660682 | 5.1:+55609012 | None:intergenic |
CAACAACATCTATGTGACGA+CGG | 0.662935 | 5.1:+55608743 | None:intergenic |
TGTGAATGCAAGACTATACG+TGG | 0.663201 | 5.1:-55610402 | MS.gene56989:CDS |
AATGAATGCACGGTACACAT+CGG | 0.665103 | 5.1:+55610245 | None:intergenic |
CAGGTTCGGTTAAGAAGGCG+CGG | 0.667374 | 5.1:-55616002 | MS.gene56989:CDS |
CAATAGGAGGCTGATGACTG+TGG | 0.671941 | 5.1:+55612291 | None:intergenic |
ACATCAACAACAGTAAACTC+AGG | 0.672812 | 5.1:+55612212 | None:intergenic |
AAGCAGTGGTCAATGTTGTG+TGG | 0.675358 | 5.1:+55610221 | None:intergenic |
TGTACAACTCCAGACAGACA+AGG | 0.675587 | 5.1:+55609097 | None:intergenic |
TGTTTCCTAGGCACAAAGAG+CGG | 0.681256 | 5.1:-55608825 | MS.gene56989:CDS |
CTTCCTCTGAACCAGCGACG+GGG | 0.682309 | 5.1:+55611778 | None:intergenic |
TAGGTGGGGAATGACCATCT+GGG | 0.685278 | 5.1:+55610313 | None:intergenic |
CTCCAGACAGACAAGGCCAG+TGG | 0.687437 | 5.1:+55609104 | None:intergenic |
CTTGGACAAGGAGAAGTGTG+AGG | 0.693103 | 5.1:-55610048 | MS.gene56989:CDS |
TAACCCGCAGGAGATTGATG+AGG | 0.693992 | 5.1:-55615869 | MS.gene56989:CDS |
GAACTTCGGAGAACACAACA+AGG | 0.697668 | 5.1:+55612084 | None:intergenic |
AGGCCAAGTTTATTGCTGGG+CGG | 0.703125 | 5.1:-55609161 | MS.gene56989:CDS |
TGTTGTTGATGTTGACGGAG+AGG | 0.708009 | 5.1:-55612201 | MS.gene56989:CDS |
CAACGCAAGATACTACAGCA+GGG | 0.714305 | 5.1:+55612138 | None:intergenic |
AGTGACAAGAGTTTCAGTAG+CGG | 0.717098 | 5.1:-55615955 | MS.gene56989:CDS |
GTTGTGTGGAAATGAATGCA+CGG | 0.719285 | 5.1:+55610235 | None:intergenic |
TTGTTGGTTCTGGTGCACTG+GGG | 0.742108 | 5.1:-55610715 | MS.gene56989:CDS |
ATGGTAGGGAGACTATGAGG+AGG | 0.751101 | 5.1:-55615819 | MS.gene56989:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 55608678 | 55616112 | 55608678 | ID=MS.gene56989 |
chr5.1 | mRNA | 55608678 | 55616112 | 55608678 | ID=MS.gene56989.t1;Parent=MS.gene56989 |
chr5.1 | exon | 55615764 | 55616112 | 55615764 | ID=MS.gene56989.t1.exon1;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55615764 | 55616112 | 55615764 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
chr5.1 | exon | 55614273 | 55614490 | 55614273 | ID=MS.gene56989.t1.exon2;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55614273 | 55614490 | 55614273 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
chr5.1 | exon | 55611575 | 55612369 | 55611575 | ID=MS.gene56989.t1.exon3;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55611575 | 55612369 | 55611575 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
chr5.1 | exon | 55610014 | 55610882 | 55610014 | ID=MS.gene56989.t1.exon4;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55610014 | 55610882 | 55610014 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
chr5.1 | exon | 55609473 | 55609905 | 55609473 | ID=MS.gene56989.t1.exon5;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55609473 | 55609905 | 55609473 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
chr5.1 | exon | 55608678 | 55609274 | 55608678 | ID=MS.gene56989.t1.exon6;Parent=MS.gene56989.t1 |
chr5.1 | CDS | 55608678 | 55609274 | 55608678 | ID=cds.MS.gene56989.t1;Parent=MS.gene56989.t1 |
Gene Sequence |
Protein sequence |