Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57024.t1 | XP_003615694.1 | 95.9 | 370 | 13 | 1 | 1 | 368 | 22 | 391 | 4.20E-218 | 766.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57024.t1 | P48625 | 80.9 | 362 | 65 | 1 | 5 | 362 | 13 | 374 | 1.6e-186 | 653.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57024.t1 | G7JZI3 | 95.9 | 370 | 13 | 1 | 1 | 368 | 22 | 391 | 3.0e-218 | 766.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04984 | MS.gene57024 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene57024 | 0.823245 | 1.54E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene57024 | 0.823677 | 1.22E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene57024 | 0.802215 | 6.23E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57024.t1 | MTR_5g071170 | 95.946 | 370 | 13 | 1 | 1 | 368 | 22 | 391 | 0.0 | 736 |
| MS.gene57024.t1 | MTR_3g464330 | 75.758 | 363 | 88 | 0 | 3 | 365 | 17 | 379 | 0.0 | 568 |
| MS.gene57024.t1 | MTR_7g068780 | 71.510 | 351 | 100 | 0 | 12 | 362 | 89 | 439 | 0.0 | 557 |
| MS.gene57024.t1 | MTR_4g015630 | 72.650 | 351 | 96 | 0 | 12 | 362 | 83 | 433 | 0.0 | 536 |
| MS.gene57024.t1 | MTR_7g068780 | 68.924 | 251 | 78 | 0 | 12 | 262 | 89 | 339 | 1.04e-131 | 380 |
| MS.gene57024.t1 | MTR_1g054035 | 37.805 | 328 | 186 | 5 | 9 | 320 | 20 | 345 | 5.15e-70 | 224 |
| MS.gene57024.t1 | MTR_7g093200 | 39.634 | 328 | 177 | 8 | 15 | 324 | 75 | 399 | 7.62e-69 | 223 |
| MS.gene57024.t1 | MTR_1g111880 | 36.527 | 334 | 181 | 7 | 3 | 321 | 11 | 328 | 3.25e-59 | 196 |
| MS.gene57024.t1 | MTR_4g130980 | 26.959 | 319 | 217 | 9 | 8 | 322 | 91 | 397 | 2.15e-30 | 120 |
| MS.gene57024.t1 | MTR_2g460790 | 27.397 | 365 | 229 | 12 | 8 | 361 | 92 | 431 | 3.11e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57024.t1 | AT5G05580 | 70.986 | 355 | 103 | 0 | 11 | 365 | 79 | 433 | 0.0 | 558 |
| MS.gene57024.t1 | AT3G11170 | 70.308 | 357 | 106 | 0 | 9 | 365 | 84 | 440 | 0.0 | 552 |
| MS.gene57024.t1 | AT2G29980 | 70.986 | 355 | 103 | 0 | 9 | 363 | 22 | 376 | 0.0 | 531 |
| MS.gene57024.t1 | AT5G05580 | 71.667 | 300 | 85 | 0 | 11 | 310 | 79 | 378 | 1.07e-168 | 476 |
| MS.gene57024.t1 | AT2G29980 | 70.079 | 254 | 76 | 0 | 9 | 262 | 22 | 275 | 8.94e-128 | 369 |
| MS.gene57024.t1 | AT3G12120 | 39.077 | 325 | 176 | 9 | 15 | 321 | 25 | 345 | 7.92e-69 | 221 |
| MS.gene57024.t1 | AT3G12120 | 39.077 | 325 | 176 | 9 | 15 | 321 | 25 | 345 | 7.92e-69 | 221 |
| MS.gene57024.t1 | AT4G30950 | 27.329 | 322 | 208 | 10 | 7 | 319 | 91 | 395 | 2.19e-28 | 115 |
Find 78 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTTGAGTTATGTTCTT+AGG | 0.111843 | 5.1:-54891638 | MS.gene57024:CDS |
| CTCTTCAAGGCACAATGTTT+TGG | 0.195045 | 5.1:-54891539 | MS.gene57024:CDS |
| GTTTGCATATCCAATTTATT+TGG | 0.197044 | 5.1:-54890836 | MS.gene57024:intron |
| CTAATATCTGCTATCTTAAA+TGG | 0.243193 | 5.1:+54891702 | None:intergenic |
| AACTTTATGGAGTTCCCTAT+TGG | 0.279302 | 5.1:-54890534 | MS.gene57024:CDS |
| TTCTTAACCCAACAATGTTT+TGG | 0.291986 | 5.1:+54891669 | None:intergenic |
| TGAAAGTAACTTTACCCAAT+AGG | 0.348461 | 5.1:+54890519 | None:intergenic |
| AAGTATTTAATTAGATGAAA+TGG | 0.351127 | 5.1:+54889782 | None:intergenic |
| CCTTGAAGAGGCCAATAAAT+TGG | 0.355834 | 5.1:+54891552 | None:intergenic |
| CTGCTATTCCAAAACATTGT+TGG | 0.356456 | 5.1:-54891677 | MS.gene57024:CDS |
| AAGCTTCTCAGATAGTTCTT+TGG | 0.357997 | 5.1:-54891352 | MS.gene57024:CDS |
| TGCTATTCCAAAACATTGTT+GGG | 0.363640 | 5.1:-54891676 | MS.gene57024:CDS |
| ACTTTATGGAGTTCCCTATT+GGG | 0.371967 | 5.1:-54890533 | MS.gene57024:intron |
| CCAATTTATTGGCCTCTTCA+AGG | 0.375978 | 5.1:-54891552 | MS.gene57024:CDS |
| GGGTGAGAACAAGTCGCTAT+AGG | 0.376935 | 5.1:+54890657 | None:intergenic |
| AGTAGAAGTCCTGGAAAATC+AGG | 0.381452 | 5.1:-54890694 | MS.gene57024:CDS |
| GAATTGAGGAATGCAAAATA+TGG | 0.383781 | 5.1:+54891313 | None:intergenic |
| ATCTTTGAGTTATGTTCTTA+GGG | 0.388238 | 5.1:-54891637 | MS.gene57024:CDS |
| ACAACAGTTGATCGTGACTA+TGG | 0.390768 | 5.1:-54890098 | MS.gene57024:CDS |
| TTCTTTGGTGAATAACTTTG+TGG | 0.401476 | 5.1:-54891337 | MS.gene57024:CDS |
| GTTGGTAGTTGCTGCATTGA+TGG | 0.420417 | 5.1:-54891610 | MS.gene57024:CDS |
| GGTGAGAACAAGTCGCTATA+GGG | 0.420549 | 5.1:+54890658 | None:intergenic |
| GAAAGTAACTTTACCCAATA+GGG | 0.437664 | 5.1:+54890520 | None:intergenic |
| CTTATTCATTGTGCTTCTTG+TGG | 0.443124 | 5.1:+54889684 | None:intergenic |
| CTGCAACTCGGTTTGATAGC+TGG | 0.459516 | 5.1:-54891584 | MS.gene57024:CDS |
| AGGTGATAATGAGGAATTTG+AGG | 0.460595 | 5.1:+54890020 | None:intergenic |
| TGACGGTTTCAACAGTTTGT+TGG | 0.468344 | 5.1:-54890618 | MS.gene57024:CDS |
| ATTATCTTAGTTGACAGAAA+AGG | 0.475863 | 5.1:-54890917 | MS.gene57024:intron |
| GTCACATACTTGCACCATCA+TGG | 0.478383 | 5.1:-54890301 | MS.gene57024:CDS |
| CACTAGGGTCAAATTCACTA+TGG | 0.482540 | 5.1:+54891733 | None:intergenic |
| TTAAATGGTGGAGGAGCACT+AGG | 0.483704 | 5.1:+54891717 | None:intergenic |
| TCTTTGGTGAATAACTTTGT+GGG | 0.492978 | 5.1:-54891336 | MS.gene57024:CDS |
| GGATATGCAAACAATGGTAA+AGG | 0.503671 | 5.1:+54890847 | None:intergenic |
| AACTATCTGAGAAGCTTCCA+TGG | 0.506224 | 5.1:+54891358 | None:intergenic |
| GGTGATAATGAGGAATTTGA+GGG | 0.507016 | 5.1:+54890021 | None:intergenic |
| TTCACTCACCATCCATGGTA+TGG | 0.511103 | 5.1:+54891285 | None:intergenic |
| TCAATTCTTGTTCCATACCA+TGG | 0.512241 | 5.1:-54891297 | MS.gene57024:CDS |
| TTAATTAGATGAAATGGAAG+TGG | 0.519942 | 5.1:+54889788 | None:intergenic |
| CATCCTTCTCAACATTCCCA+TGG | 0.520258 | 5.1:+54891104 | None:intergenic |
| TTTCAGTGGAGTAGAAGTCC+TGG | 0.522116 | 5.1:-54890703 | MS.gene57024:intron |
| ACTATGGTTGTAGCCACCAT+TGG | 0.526256 | 5.1:+54891749 | None:intergenic |
| TCATTATCACCTTGTTGAAG+CGG | 0.530017 | 5.1:-54890009 | MS.gene57024:intron |
| TTGTGCTTCTTGTGGAGCTG+AGG | 0.530462 | 5.1:+54889692 | None:intergenic |
| TTCTTGTTCCATACCATGGA+TGG | 0.533434 | 5.1:-54891293 | MS.gene57024:intron |
| TTATGTTCTTAGGGATGTGT+TGG | 0.534219 | 5.1:-54891628 | MS.gene57024:CDS |
| TAAAGTTTGAGAATTAAAAG+TGG | 0.537680 | 5.1:+54890550 | None:intergenic |
| CAAAACATTGTGCCTTGAAG+AGG | 0.537908 | 5.1:+54891540 | None:intergenic |
| CATTGATGGTAGCTGCAACT+CGG | 0.542877 | 5.1:-54891596 | MS.gene57024:CDS |
| CAGTTGATCGTGACTATGGT+TGG | 0.558183 | 5.1:-54890094 | MS.gene57024:CDS |
| TCTGCTATCTTAAATGGTGG+AGG | 0.559855 | 5.1:+54891708 | None:intergenic |
| GAAACAATGGTTGTAACCAA+TGG | 0.561552 | 5.1:-54891765 | None:intergenic |
| AAAACACATCATCAAAACCA+TGG | 0.564668 | 5.1:-54891121 | MS.gene57024:CDS |
| ACTATTTCACTCACCATCCA+TGG | 0.564737 | 5.1:+54891280 | None:intergenic |
| AATAACATTCATCATGACAT+TGG | 0.566954 | 5.1:-54890068 | MS.gene57024:CDS |
| AAACCATGGGAATGTTGAGA+AGG | 0.567280 | 5.1:-54891107 | MS.gene57024:CDS |
| GATCACTTCGTAAGTGACAC+TGG | 0.567578 | 5.1:-54889740 | MS.gene57024:CDS |
| CAGGAATGGAGTTATCTAAG+AGG | 0.574831 | 5.1:-54890128 | MS.gene57024:CDS |
| TGTTGAGAAGGATGAGTCAT+GGG | 0.576329 | 5.1:-54891095 | MS.gene57024:CDS |
| ATGTTGAGAAGGATGAGTCA+TGG | 0.582381 | 5.1:-54891096 | MS.gene57024:CDS |
| GCTTCAACAAGGTGATAATG+AGG | 0.594371 | 5.1:+54890011 | None:intergenic |
| AAACACATCATCAAAACCAT+GGG | 0.596737 | 5.1:-54891120 | MS.gene57024:CDS |
| TTTACCTTGCCACGGTACCA+TGG | 0.598110 | 5.1:+54890262 | None:intergenic |
| TAAAAGTGGACTAGTTGTGA+AGG | 0.605181 | 5.1:+54890564 | None:intergenic |
| TAAATTGGATATGCAAACAA+TGG | 0.608374 | 5.1:+54890841 | None:intergenic |
| ATTGTTGGGTTAAGAACACA+TGG | 0.614576 | 5.1:-54891662 | MS.gene57024:CDS |
| GAATGGAGTTATCTAAGAGG+TGG | 0.617906 | 5.1:-54890125 | MS.gene57024:CDS |
| ATATCTGCTATCTTAAATGG+TGG | 0.622664 | 5.1:+54891705 | None:intergenic |
| ACAATGGTTGTAACCAATGG+TGG | 0.624372 | 5.1:-54891762 | MS.gene57024:CDS |
| ATTACCATGGTACCGTGGCA+AGG | 0.629596 | 5.1:-54890266 | MS.gene57024:intron |
| CAATGAGAGAAAAGAAGTGA+CGG | 0.642724 | 5.1:-54890635 | MS.gene57024:CDS |
| TTTGTTTGGAATAGTGGCCA+TGG | 0.643837 | 5.1:-54891375 | MS.gene57024:intron |
| GTAGAAGTCCTGGAAAATCA+GGG | 0.649940 | 5.1:-54890693 | MS.gene57024:CDS |
| ATGGTATGGAACAAGAATTG+AGG | 0.651980 | 5.1:+54891299 | None:intergenic |
| AAGTAATTACCGCTTCAACA+AGG | 0.661057 | 5.1:+54890000 | None:intergenic |
| ATTTCTGCGTGTAACCATGA+TGG | 0.688984 | 5.1:+54890287 | None:intergenic |
| CAGAAATTACCATGGTACCG+TGG | 0.699527 | 5.1:-54890271 | MS.gene57024:CDS |
| TAAATGGTGGAGGAGCACTA+GGG | 0.705178 | 5.1:+54891718 | None:intergenic |
| GTTACACGCAGAAATTACCA+TGG | 0.733077 | 5.1:-54890279 | MS.gene57024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATCATTTATAAGA+CGG | + | chr5.1:54891077-54891096 | None:intergenic | 10.0% |
| !!! | GTTCATAATATTTTTTTTTT+TGG | - | chr5.1:54890500-54890519 | MS.gene57024:intron | 10.0% |
| !! | AAGTATTTAATTAGATGAAA+TGG | + | chr5.1:54891665-54891684 | None:intergenic | 15.0% |
| !!! | TTCATTTTTAAATGCATTTT+TGG | - | chr5.1:54890944-54890963 | MS.gene57024:intron | 15.0% |
| !! | AAAAAACTCACCAAATAAAT+TGG | + | chr5.1:54890621-54890640 | None:intergenic | 20.0% |
| !! | AATTGTTTATGTGCATAATT+AGG | - | chr5.1:54891236-54891255 | MS.gene57024:intron | 20.0% |
| !! | ATAAACAATTGAATGATTGA+AGG | + | chr5.1:54891226-54891245 | None:intergenic | 20.0% |
| !! | TAAAGTTTGAGAATTAAAAG+TGG | + | chr5.1:54890897-54890916 | None:intergenic | 20.0% |
| !!! | CTTTTAATTCTCAAACTTTA+TGG | - | chr5.1:54890897-54890916 | MS.gene57024:CDS | 20.0% |
| !!! | TATTATATGCATAGTTTTTG+TGG | - | chr5.1:54890426-54890445 | MS.gene57024:intron | 20.0% |
| !!! | TTTGCTTTAATGAATTTTTC+AGG | - | chr5.1:54890288-54890307 | MS.gene57024:CDS | 20.0% |
| ! | AACATCAATAAATCACATAC+TGG | + | chr5.1:54890377-54890396 | None:intergenic | 25.0% |
| ! | AATAACATTCATCATGACAT+TGG | - | chr5.1:54891376-54891395 | MS.gene57024:intron | 25.0% |
| ! | ATTATCTTAGTTGACAGAAA+AGG | - | chr5.1:54890527-54890546 | MS.gene57024:intron | 25.0% |
| ! | CTAATATCTGCTATCTTAAA+TGG | + | chr5.1:54889745-54889764 | None:intergenic | 25.0% |
| ! | GTTAATGTTATGACATACTA+TGG | - | chr5.1:54890006-54890025 | MS.gene57024:intron | 25.0% |
| ! | GTTTCGATAAACGATAAATT+TGG | + | chr5.1:54891053-54891072 | None:intergenic | 25.0% |
| ! | GTTTGCATATCCAATTTATT+TGG | - | chr5.1:54890608-54890627 | MS.gene57024:CDS | 25.0% |
| ! | TAAATTGGATATGCAAACAA+TGG | + | chr5.1:54890606-54890625 | None:intergenic | 25.0% |
| ! | TTAATTAGATGAAATGGAAG+TGG | + | chr5.1:54891659-54891678 | None:intergenic | 25.0% |
| ! | TTGGTTAGAGAACTAAAAAT+AGG | + | chr5.1:54891489-54891508 | None:intergenic | 25.0% |
| !! | ATCTTTGAGTTATGTTCTTA+GGG | - | chr5.1:54889807-54889826 | MS.gene57024:CDS | 25.0% |
| !!! | ATTATATTTTTACCTTGCCA+CGG | + | chr5.1:54891193-54891212 | None:intergenic | 25.0% |
| !!! | GTAAACATTGATGTTTTGTT+TGG | - | chr5.1:54890055-54890074 | MS.gene57024:CDS | 25.0% |
| AAAACACATCATCAAAACCA+TGG | - | chr5.1:54890323-54890342 | MS.gene57024:CDS | 30.0% | |
| AAACACATCATCAAAACCAT+GGG | - | chr5.1:54890324-54890343 | MS.gene57024:CDS | 30.0% | |
| ATATCTGCTATCTTAAATGG+TGG | + | chr5.1:54889742-54889761 | None:intergenic | 30.0% | |
| GAAAGTAACTTTACCCAATA+GGG | + | chr5.1:54890927-54890946 | None:intergenic | 30.0% | |
| GAATTGAGGAATGCAAAATA+TGG | + | chr5.1:54890134-54890153 | None:intergenic | 30.0% | |
| TCTTTGGTGAATAACTTTGT+GGG | - | chr5.1:54890108-54890127 | MS.gene57024:CDS | 30.0% | |
| TGAAAGTAACTTTACCCAAT+AGG | + | chr5.1:54890928-54890947 | None:intergenic | 30.0% | |
| TGCTATTCCAAAACATTGTT+GGG | - | chr5.1:54889768-54889787 | MS.gene57024:CDS | 30.0% | |
| TGTCATGTTTAATGTTTCAG+TGG | - | chr5.1:54890727-54890746 | MS.gene57024:intron | 30.0% | |
| TTCTTTGGTGAATAACTTTG+TGG | - | chr5.1:54890107-54890126 | MS.gene57024:CDS | 30.0% | |
| TTTGCCATGAAACAAAAACA+TGG | + | chr5.1:54890235-54890254 | None:intergenic | 30.0% | |
| ! | AAAGCAGCAAAACCAATTTT+TGG | - | chr5.1:54891602-54891621 | MS.gene57024:CDS | 30.0% |
| ! | GATCTTTGAGTTATGTTCTT+AGG | - | chr5.1:54889806-54889825 | MS.gene57024:CDS | 30.0% |
| ! | TTCTTAACCCAACAATGTTT+TGG | + | chr5.1:54889778-54889797 | None:intergenic | 30.0% |
| ! | TTTTGGGCAATTTTTGTTCT+TGG | - | chr5.1:54889922-54889941 | MS.gene57024:intron | 30.0% |
| ! | TTTTTGTTCTTGGACATGAT+TGG | - | chr5.1:54889932-54889951 | MS.gene57024:intron | 30.0% |
| !! | TTGTCCATGTTTTTGTTTCA+TGG | - | chr5.1:54890228-54890247 | MS.gene57024:intron | 30.0% |
| !!! | GGTATTTTTGGCCAATTTAT+TGG | - | chr5.1:54889881-54889900 | MS.gene57024:intron | 30.0% |
| !!! | TGATGTTTTGTTTGGAATAG+TGG | - | chr5.1:54890063-54890082 | MS.gene57024:CDS | 30.0% |
| AACTTTATGGAGTTCCCTAT+TGG | - | chr5.1:54890910-54890929 | MS.gene57024:CDS | 35.0% | |
| AAGCTTCTCAGATAGTTCTT+TGG | - | chr5.1:54890092-54890111 | MS.gene57024:CDS | 35.0% | |
| AAGTAATTACCGCTTCAACA+AGG | + | chr5.1:54891447-54891466 | None:intergenic | 35.0% | |
| ACTCACTCATGTGTACAATT+TGG | - | chr5.1:54891293-54891312 | MS.gene57024:intron | 35.0% | |
| ACTTTATGGAGTTCCCTATT+GGG | - | chr5.1:54890911-54890930 | MS.gene57024:intron | 35.0% | |
| ATCAGACTCAACAAGATTTG+AGG | + | chr5.1:54891272-54891291 | None:intergenic | 35.0% | |
| ATGGTATGGAACAAGAATTG+AGG | + | chr5.1:54890148-54890167 | None:intergenic | 35.0% | |
| ATTGTTGGGTTAAGAACACA+TGG | - | chr5.1:54889782-54889801 | MS.gene57024:CDS | 35.0% | |
| CAATGAGAGAAAAGAAGTGA+CGG | - | chr5.1:54890809-54890828 | MS.gene57024:intron | 35.0% | |
| CATCTTACGTAAGAAATGAC+TGG | + | chr5.1:54891525-54891544 | None:intergenic | 35.0% | |
| CGGTAATAGTCTCCAAAAAT+TGG | + | chr5.1:54891617-54891636 | None:intergenic | 35.0% | |
| CTGCTATTCCAAAACATTGT+TGG | - | chr5.1:54889767-54889786 | MS.gene57024:CDS | 35.0% | |
| GGATATGCAAACAATGGTAA+AGG | + | chr5.1:54890600-54890619 | None:intergenic | 35.0% | |
| GTTGAAGCGGTAATTACTTA+CGG | - | chr5.1:54891448-54891467 | MS.gene57024:intron | 35.0% | |
| TCAAAAACACGGGTAAGTTT+AGG | + | chr5.1:54891569-54891588 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCATACCA+TGG | - | chr5.1:54890147-54890166 | MS.gene57024:intron | 35.0% | |
| TCATTATCACCTTGTTGAAG+CGG | - | chr5.1:54891435-54891454 | MS.gene57024:intron | 35.0% | |
| TCTGCAATGAGTCAAAAACA+CGG | + | chr5.1:54891580-54891599 | None:intergenic | 35.0% | |
| TTATGTTCTTAGGGATGTGT+TGG | - | chr5.1:54889816-54889835 | MS.gene57024:CDS | 35.0% | |
| ! | AACTGCAGATTTTTGTCATG+TGG | - | chr5.1:54891111-54891130 | MS.gene57024:CDS | 35.0% |
| ! | AGGTGATAATGAGGAATTTG+AGG | + | chr5.1:54891427-54891446 | None:intergenic | 35.0% |
| ! | GGTGATAATGAGGAATTTGA+GGG | + | chr5.1:54891426-54891445 | None:intergenic | 35.0% |
| ! | GTCACTTCTTTTCTCTCATT+GGG | + | chr5.1:54890810-54890829 | None:intergenic | 35.0% |
| ! | TCTTCAAGGCACAATGTTTT+GGG | - | chr5.1:54889906-54889925 | MS.gene57024:intron | 35.0% |
| !! | GGTTTGATAGCTGGTATTTT+TGG | - | chr5.1:54889869-54889888 | MS.gene57024:intron | 35.0% |
| !! | TAAAAGTGGACTAGTTGTGA+AGG | + | chr5.1:54890883-54890902 | None:intergenic | 35.0% |
| !!! | GTGATGATTTTTCTGGTTCA+CGG | + | chr5.1:54891637-54891656 | None:intergenic | 35.0% |
| AAACCATGGGAATGTTGAGA+AGG | - | chr5.1:54890337-54890356 | MS.gene57024:intron | 40.0% | |
| AACTATCTGAGAAGCTTCCA+TGG | + | chr5.1:54890089-54890108 | None:intergenic | 40.0% | |
| ACAACAGTTGATCGTGACTA+TGG | - | chr5.1:54891346-54891365 | MS.gene57024:CDS | 40.0% | |
| ACTATTTCACTCACCATCCA+TGG | + | chr5.1:54890167-54890186 | None:intergenic | 40.0% | |
| ACTCATGTGTACAATTTGGC+AGG | - | chr5.1:54891297-54891316 | MS.gene57024:CDS | 40.0% | |
| ACTTCATTGTTCCCCTTTGT+TGG | + | chr5.1:54890459-54890478 | None:intergenic | 40.0% | |
| AGTAGAAGTCCTGGAAAATC+AGG | - | chr5.1:54890750-54890769 | MS.gene57024:intron | 40.0% | |
| AGTTCTCTAACCAATGTCTC+AGG | - | chr5.1:54891495-54891514 | MS.gene57024:intron | 40.0% | |
| ATGTTGAGAAGGATGAGTCA+TGG | - | chr5.1:54890348-54890367 | MS.gene57024:intron | 40.0% | |
| ATTTCTGCGTGTAACCATGA+TGG | + | chr5.1:54891160-54891179 | None:intergenic | 40.0% | |
| CAAAACATTGTGCCTTGAAG+AGG | + | chr5.1:54889907-54889926 | None:intergenic | 40.0% | |
| CACTAGGGTCAAATTCACTA+TGG | + | chr5.1:54889714-54889733 | None:intergenic | 40.0% | |
| CAGGAATGGAGTTATCTAAG+AGG | - | chr5.1:54891316-54891335 | MS.gene57024:CDS | 40.0% | |
| CCTTGAAGAGGCCAATAAAT+TGG | + | chr5.1:54889895-54889914 | None:intergenic | 40.0% | |
| CTGCAATGAGTCAAAAACAC+GGG | + | chr5.1:54891579-54891598 | None:intergenic | 40.0% | |
| CTTCATTGTTCCCCTTTGTT+GGG | + | chr5.1:54890458-54890477 | None:intergenic | 40.0% | |
| GAATGGAGTTATCTAAGAGG+TGG | - | chr5.1:54891319-54891338 | MS.gene57024:CDS | 40.0% | |
| GTAGAAGTCCTGGAAAATCA+GGG | - | chr5.1:54890751-54890770 | MS.gene57024:intron | 40.0% | |
| GTTACACGCAGAAATTACCA+TGG | - | chr5.1:54891165-54891184 | MS.gene57024:intron | 40.0% | |
| TCTGCTATCTTAAATGGTGG+AGG | + | chr5.1:54889739-54889758 | None:intergenic | 40.0% | |
| TGACGGTTTCAACAGTTTGT+TGG | - | chr5.1:54890826-54890845 | MS.gene57024:intron | 40.0% | |
| TGTGGTTTAGTCCCAACAAA+GGG | - | chr5.1:54890444-54890463 | MS.gene57024:intron | 40.0% | |
| TGTGTACAATTTGGCAGGAA+TGG | - | chr5.1:54891302-54891321 | MS.gene57024:CDS | 40.0% | |
| TGTTGAGAAGGATGAGTCAT+GGG | - | chr5.1:54890349-54890368 | MS.gene57024:intron | 40.0% | |
| TTCTTGTTCCATACCATGGA+TGG | - | chr5.1:54890151-54890170 | MS.gene57024:intron | 40.0% | |
| TTGTGGTTTAGTCCCAACAA+AGG | - | chr5.1:54890443-54890462 | MS.gene57024:intron | 40.0% | |
| ! | CCAATTTATTGGCCTCTTCA+AGG | - | chr5.1:54889892-54889911 | MS.gene57024:intron | 40.0% |
| ! | CGTCACTTCTTTTCTCTCAT+TGG | + | chr5.1:54890811-54890830 | None:intergenic | 40.0% |
| ! | CTCTTCAAGGCACAATGTTT+TGG | - | chr5.1:54889905-54889924 | MS.gene57024:intron | 40.0% |
| ! | GCAGATTTTTGTCATGTGGT+TGG | - | chr5.1:54891115-54891134 | MS.gene57024:CDS | 40.0% |
| ! | GCTTCAACAAGGTGATAATG+AGG | + | chr5.1:54891436-54891455 | None:intergenic | 40.0% |
| ! | TTTGTTTGGAATAGTGGCCA+TGG | - | chr5.1:54890069-54890088 | MS.gene57024:CDS | 40.0% |
| !! | GGAAGTGGTGATGATTTTTC+TGG | + | chr5.1:54891644-54891663 | None:intergenic | 40.0% |
| ACTATGGTTGTAGCCACCAT+TGG | + | chr5.1:54889698-54889717 | None:intergenic | 45.0% | |
| CAGAAATTACCATGGTACCG+TGG | - | chr5.1:54891173-54891192 | MS.gene57024:intron | 45.0% | |
| CAGTTGATCGTGACTATGGT+TGG | - | chr5.1:54891350-54891369 | MS.gene57024:CDS | 45.0% | |
| CATCCTTCTCAACATTCCCA+TGG | + | chr5.1:54890343-54890362 | None:intergenic | 45.0% | |
| GATCACTTCGTAAGTGACAC+TGG | - | chr5.1:54891704-54891723 | MS.gene57024:CDS | 45.0% | |
| GGTGAGAACAAGTCGCTATA+GGG | + | chr5.1:54890789-54890808 | None:intergenic | 45.0% | |
| GTCACATACTTGCACCATCA+TGG | - | chr5.1:54891143-54891162 | MS.gene57024:intron | 45.0% | |
| GTGGTTTAGTCCCAACAAAG+GGG | - | chr5.1:54890445-54890464 | MS.gene57024:intron | 45.0% | |
| TTCACTCACCATCCATGGTA+TGG | + | chr5.1:54890162-54890181 | None:intergenic | 45.0% | |
| TTTCAGTGGAGTAGAAGTCC+TGG | - | chr5.1:54890741-54890760 | MS.gene57024:intron | 45.0% | |
| ! | AAGTGTGACCCTGATTTTCC+AGG | + | chr5.1:54890762-54890781 | None:intergenic | 45.0% |
| ! | CATTGATGGTAGCTGCAACT+CGG | - | chr5.1:54889848-54889867 | MS.gene57024:CDS | 45.0% |
| !! | GTTGGTAGTTGCTGCATTGA+TGG | - | chr5.1:54889834-54889853 | MS.gene57024:CDS | 45.0% |
| !! | TAAATGGTGGAGGAGCACTA+GGG | + | chr5.1:54889729-54889748 | None:intergenic | 45.0% |
| !! | TTAAATGGTGGAGGAGCACT+AGG | + | chr5.1:54889730-54889749 | None:intergenic | 45.0% |
| ATTACCATGGTACCGTGGCA+AGG | - | chr5.1:54891178-54891197 | MS.gene57024:intron | 50.0% | |
| GACTGGTGATCCTGAGACAT+TGG | + | chr5.1:54891508-54891527 | None:intergenic | 50.0% | |
| GGGTGAGAACAAGTCGCTAT+AGG | + | chr5.1:54890790-54890809 | None:intergenic | 50.0% | |
| TTGTGCTTCTTGTGGAGCTG+AGG | + | chr5.1:54891755-54891774 | None:intergenic | 50.0% | |
| TTTACCTTGCCACGGTACCA+TGG | + | chr5.1:54891185-54891204 | None:intergenic | 50.0% | |
| ! | CTGCAACTCGGTTTGATAGC+TGG | - | chr5.1:54889860-54889879 | MS.gene57024:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54889685 | 54891781 | 54889685 | ID=MS.gene57024 |
| chr5.1 | mRNA | 54889685 | 54891781 | 54889685 | ID=MS.gene57024.t1;Parent=MS.gene57024 |
| chr5.1 | exon | 54891513 | 54891781 | 54891513 | ID=MS.gene57024.t1.exon1;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54891513 | 54891781 | 54891513 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54891294 | 54891383 | 54891294 | ID=MS.gene57024.t1.exon2;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54891294 | 54891383 | 54891294 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54891090 | 54891156 | 54891090 | ID=MS.gene57024.t1.exon3;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54891090 | 54891156 | 54891090 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54890837 | 54890929 | 54890837 | ID=MS.gene57024.t1.exon4;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54890837 | 54890929 | 54890837 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54890534 | 54890719 | 54890534 | ID=MS.gene57024.t1.exon5;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54890534 | 54890719 | 54890534 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54890267 | 54890347 | 54890267 | ID=MS.gene57024.t1.exon6;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54890267 | 54890347 | 54890267 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54890010 | 54890147 | 54890010 | ID=MS.gene57024.t1.exon7;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54890010 | 54890147 | 54890010 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| chr5.1 | exon | 54889685 | 54889867 | 54889685 | ID=MS.gene57024.t1.exon8;Parent=MS.gene57024.t1 |
| chr5.1 | CDS | 54889685 | 54889867 | 54889685 | ID=cds.MS.gene57024.t1;Parent=MS.gene57024.t1 |
| Gene Sequence |
| Protein sequence |
