AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57152

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57152.t1 MTR_6g008690 97.970 542 10 1 1 542 1 541 0.0 1088
MS.gene57152.t1 MTR_0294s0020 37.616 537 302 7 12 537 36 550 4.70e-126 380
MS.gene57152.t1 MTR_4g033315 38.148 540 303 7 12 540 36 555 2.38e-125 379
MS.gene57152.t1 MTR_4g033310 38.148 540 303 7 12 540 36 555 2.38e-125 379
MS.gene57152.t1 MTR_4g033325 37.430 537 303 9 12 537 36 550 1.69e-124 376
MS.gene57152.t1 MTR_3g005010 37.893 541 295 9 12 540 35 546 3.51e-124 375
MS.gene57152.t1 MTR_4g033330 37.358 530 298 7 4 519 24 533 2.55e-118 360
MS.gene57152.t1 MTR_4g019580 34.901 553 311 10 16 542 45 574 6.86e-114 350
MS.gene57152.t1 MTR_8g038880 35.420 559 306 14 12 542 25 556 1.64e-113 348
MS.gene57152.t1 MTR_4g033375 38.478 473 272 6 13 480 38 496 3.56e-113 345
MS.gene57152.t1 MTR_4g033395 38.477 486 260 9 12 482 37 498 3.88e-113 345
MS.gene57152.t1 MTR_4g015080 36.166 553 304 9 13 537 40 571 6.79e-111 342
MS.gene57152.t1 MTR_7g065080 34.358 553 308 10 12 538 36 559 2.28e-110 341
MS.gene57152.t1 MTR_3g014790 35.929 565 306 13 5 541 15 551 6.30e-110 339
MS.gene57152.t1 MTR_3g069500 35.556 540 293 10 24 538 52 561 1.92e-109 338
MS.gene57152.t1 MTR_4g033325 37.418 457 253 9 92 537 18 452 1.38e-108 332
MS.gene57152.t1 MTR_4g033325 38.372 430 232 9 119 537 19 426 4.10e-108 330
MS.gene57152.t1 MTR_4g033385 37.945 477 252 11 77 537 5 453 1.09e-107 330
MS.gene57152.t1 MTR_7g067010 34.539 553 313 11 13 537 30 561 1.13e-107 333
MS.gene57152.t1 MTR_3g069420 34.120 551 312 12 16 538 43 570 2.69e-106 330
MS.gene57152.t1 MTR_3g072300 35.145 552 319 9 12 540 29 564 6.35e-106 329
MS.gene57152.t1 MTR_3g069440 35.018 554 309 11 13 538 39 569 5.52e-104 324
MS.gene57152.t1 MTR_4g033310 35.283 530 268 9 12 540 36 491 4.83e-99 308
MS.gene57152.t1 MTR_3g462710 32.194 556 327 10 13 538 30 565 6.97e-98 308
MS.gene57152.t1 MTR_7g065080 34.331 501 274 10 64 538 1 472 7.64e-98 306
MS.gene57152.t1 MTR_7g098040 32.332 566 321 11 6 536 34 572 8.52e-98 309
MS.gene57152.t1 MTR_7g098200 31.860 543 333 8 12 536 34 557 1.72e-96 305
MS.gene57152.t1 MTR_7g098230 32.657 542 318 11 23 536 42 564 7.52e-96 303
MS.gene57152.t1 MTR_7g098160 33.095 559 326 13 6 536 33 571 9.32e-96 303
MS.gene57152.t1 MTR_7g098200 32.007 553 329 10 12 536 34 567 3.09e-95 302
MS.gene57152.t1 MTR_1g075440 32.028 562 329 14 12 542 33 572 8.37e-94 298
MS.gene57152.t1 MTR_3g112460 32.537 544 313 13 23 540 39 554 1.21e-91 292
MS.gene57152.t1 MTR_7g098090 31.986 569 324 13 6 536 33 576 1.23e-91 293
MS.gene57152.t1 MTR_7g098180 31.560 564 328 11 12 541 36 575 1.40e-91 293
MS.gene57152.t1 MTR_1g041835 33.096 562 322 15 12 542 32 570 2.58e-91 291
MS.gene57152.t1 MTR_1g041815 33.452 562 320 15 12 542 32 570 3.11e-91 291
MS.gene57152.t1 MTR_3g112470 32.169 544 315 13 23 540 39 554 9.39e-89 284
MS.gene57152.t1 MTR_1g041875 31.485 559 322 14 12 539 34 562 7.35e-88 282
MS.gene57152.t1 MTR_7g098220 31.569 548 326 11 24 542 3 530 1.86e-86 278
MS.gene57152.t1 MTR_7g098220 31.272 566 339 12 6 542 30 574 2.18e-86 279
MS.gene57152.t1 MTR_7g010820 31.900 558 319 9 15 534 34 568 7.39e-84 272
MS.gene57152.t1 MTR_1g042310 30.088 565 336 14 12 542 31 570 7.24e-83 270
MS.gene57152.t1 MTR_4g098800 31.598 557 318 11 16 536 45 574 3.51e-82 268
MS.gene57152.t1 MTR_7g088825 30.220 546 327 10 24 536 39 563 4.48e-82 268
MS.gene57152.t1 MTR_5g012270 32.904 544 324 11 23 539 45 574 1.50e-81 266
MS.gene57152.t1 MTR_4g098800 31.598 557 318 11 16 536 110 639 1.63e-81 268
MS.gene57152.t1 MTR_5g038060 30.319 564 317 10 24 541 48 581 1.67e-81 266
MS.gene57152.t1 MTR_1g042310 30.199 553 327 14 24 542 6 533 4.83e-81 264
MS.gene57152.t1 MTR_4g101380 30.796 578 316 8 12 539 32 575 4.86e-81 265
MS.gene57152.t1 MTR_1g041885 31.429 525 299 14 27 520 2 496 1.36e-80 262
MS.gene57152.t1 MTR_5g012290 32.374 556 311 14 23 539 43 572 1.36e-80 263
MS.gene57152.t1 MTR_3g462710 32.222 450 263 8 111 538 27 456 1.55e-80 259
MS.gene57152.t1 MTR_8g469310 31.541 558 327 11 4 527 25 561 6.16e-80 261
MS.gene57152.t1 MTR_1g042310 30.000 550 326 14 27 542 2 526 1.88e-79 259
MS.gene57152.t1 MTR_5g055000 29.690 549 345 8 24 542 35 572 3.25e-79 259
MS.gene57152.t1 MTR_7g098200 32.584 445 266 9 107 536 28 453 9.43e-79 256
MS.gene57152.t1 MTR_7g005930 28.210 553 353 11 6 534 34 566 7.87e-77 253
MS.gene57152.t1 MTR_5g014150 29.735 565 338 12 6 534 44 585 3.46e-76 252
MS.gene57152.t1 MTR_3g112450 31.181 542 320 10 23 537 39 554 1.23e-75 250
MS.gene57152.t1 MTR_4g107670 30.139 574 344 12 4 541 23 575 2.33e-75 249
MS.gene57152.t1 MTR_1g116930 29.433 547 334 12 16 534 32 554 2.53e-75 249
MS.gene57152.t1 MTR_7g088790 29.174 545 332 10 24 535 46 569 4.76e-74 247
MS.gene57152.t1 MTR_5g038380 30.347 547 327 12 16 527 37 564 1.03e-73 245
MS.gene57152.t1 MTR_4g107580 29.928 558 330 11 24 541 41 577 6.30e-73 243
MS.gene57152.t1 MTR_4g107510 28.388 546 339 11 24 534 53 581 2.13e-72 242
MS.gene57152.t1 MTR_4g107530 30.521 557 330 15 24 542 50 587 5.37e-72 241
MS.gene57152.t1 MTR_7g088820 29.908 545 328 11 24 535 42 565 9.02e-71 238
MS.gene57152.t1 MTR_8g469470 28.098 573 321 11 23 540 48 584 1.03e-69 234
MS.gene57152.t1 MTR_4g114340 30.601 549 335 10 16 539 33 560 1.29e-69 234
MS.gene57152.t1 MTR_2g005130 28.675 551 345 11 11 540 44 567 8.80e-69 232
MS.gene57152.t1 MTR_5g038190 28.312 551 334 12 23 535 40 567 9.92e-69 232
MS.gene57152.t1 MTR_7g098150 31.197 468 265 10 6 441 33 475 2.36e-68 228
MS.gene57152.t1 MTR_8g469480 27.568 555 338 10 24 538 55 585 3.26e-68 231
MS.gene57152.t1 MTR_8g103233 29.872 549 327 14 24 539 34 557 9.91e-68 229
MS.gene57152.t1 MTR_2g017750 26.620 571 359 10 12 540 39 591 1.09e-67 229
MS.gene57152.t1 MTR_7g013270 26.950 564 357 14 1 534 85 623 7.54e-66 226
MS.gene57152.t1 MTR_7g088820 29.615 520 312 11 49 535 5 503 1.02e-64 220
MS.gene57152.t1 MTR_1g085090 29.032 558 353 12 5 542 17 551 1.09e-63 219
MS.gene57152.t1 MTR_5g085850 28.092 566 312 13 24 541 47 565 2.60e-63 218
MS.gene57152.t1 MTR_1g026740 28.029 553 339 13 16 534 26 553 5.16e-63 216
MS.gene57152.t1 MTR_8g087780 26.151 543 307 9 22 506 36 542 1.15e-62 216
MS.gene57152.t1 MTR_7g111260 29.114 553 359 10 5 542 17 551 2.40e-62 215
MS.gene57152.t1 MTR_8g087810 27.390 544 297 11 26 506 35 543 2.52e-62 215
MS.gene57152.t1 MTR_2g101650 27.951 576 352 16 5 542 20 570 5.83e-62 214
MS.gene57152.t1 MTR_3g100980 28.042 567 348 12 8 541 15 554 7.66e-62 213
MS.gene57152.t1 MTR_0236s0050 29.679 529 314 15 35 538 1 496 3.67e-61 209
MS.gene57152.t1 MTR_1g009200 27.455 550 347 11 16 534 36 564 4.57e-61 211
MS.gene57152.t1 MTR_4g011280 28.292 562 334 16 16 538 41 572 8.22e-61 211
MS.gene57152.t1 MTR_1g026750 28.885 547 342 11 16 534 27 554 2.63e-60 209
MS.gene57152.t1 MTR_7g088820 30.752 452 269 10 107 535 25 455 7.63e-60 206
MS.gene57152.t1 MTR_4g107610 28.080 552 326 14 24 534 48 569 1.43e-59 208
MS.gene57152.t1 MTR_2g101590 27.465 568 358 16 5 538 21 568 2.63e-59 207
MS.gene57152.t1 MTR_1g057460 28.652 534 323 15 30 538 67 567 6.01e-59 205
MS.gene57152.t1 MTR_2g101610 27.273 572 362 16 1 538 18 569 5.97e-58 204
MS.gene57152.t1 MTR_1g057460 29.400 500 295 15 64 538 30 496 9.41e-58 201
MS.gene57152.t1 MTR_3g100980 27.257 587 355 14 8 541 15 582 1.04e-57 202
MS.gene57152.t1 MTR_1g026770 28.850 565 318 14 16 534 24 550 1.10e-57 202
MS.gene57152.t1 MTR_7g006540 26.277 548 359 11 24 539 80 614 4.33e-54 193
MS.gene57152.t1 MTR_7g051880 29.400 517 304 13 35 534 53 525 4.46e-54 191
MS.gene57152.t1 MTR_7g064780 26.557 546 349 11 24 536 43 569 6.86e-54 192
MS.gene57152.t1 MTR_2g101640 26.252 579 358 16 1 538 15 565 2.77e-53 191
MS.gene57152.t1 MTR_4g123537 25.865 549 342 12 23 539 57 572 4.32e-52 187
MS.gene57152.t1 MTR_2g101560 26.279 567 368 14 1 535 18 566 1.26e-50 184
MS.gene57152.t1 MTR_4g024930 26.486 555 333 15 12 534 41 552 3.56e-49 179
MS.gene57152.t1 MTR_2g093640 25.400 563 360 10 1 536 16 545 3.25e-48 176
MS.gene57152.t1 MTR_7g098210 25.508 541 272 13 27 536 2 442 7.85e-48 172
MS.gene57152.t1 MTR_2g093160 25.187 536 344 11 27 536 41 545 9.72e-48 174
MS.gene57152.t1 MTR_2g093180 25.872 545 343 12 20 536 35 546 1.05e-47 174
MS.gene57152.t1 MTR_7g051830 28.864 537 321 14 13 534 35 525 2.28e-47 173
MS.gene57152.t1 MTR_7g052600 28.253 538 323 14 13 534 35 525 1.03e-46 171
MS.gene57152.t1 MTR_7g064800 25.180 556 342 10 24 534 43 569 1.17e-46 172
MS.gene57152.t1 MTR_1g009170 25.313 399 247 9 123 518 9 359 1.49e-34 134
MS.gene57152.t1 MTR_3g065350 37.267 161 93 2 304 464 1 153 3.08e-29 113
MS.gene57152.t1 MTR_4g033390 45.055 91 49 1 452 541 30 120 4.60e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57152.t1 AT5G14940 61.111 558 187 11 1 541 1 545 0.0 647
MS.gene57152.t1 AT3G01350 60.036 553 201 8 5 541 5 553 0.0 612
MS.gene57152.t1 AT1G22540 40.840 524 282 6 24 537 47 552 6.62e-130 390
MS.gene57152.t1 AT1G72140 38.722 532 277 11 24 536 51 552 5.62e-124 375
MS.gene57152.t1 AT1G72120 39.065 535 295 8 12 534 34 549 1.71e-122 371
MS.gene57152.t1 AT1G72125 39.400 533 276 10 24 534 46 553 5.83e-122 370
MS.gene57152.t1 AT1G72130 36.347 542 312 8 2 540 26 537 5.11e-120 364
MS.gene57152.t1 AT3G54450 36.283 565 304 14 5 541 10 546 6.16e-119 362
MS.gene57152.t1 AT1G22550 37.288 531 292 9 24 534 47 556 9.58e-114 349
MS.gene57152.t1 AT3G53960 34.403 561 306 11 12 538 42 574 3.05e-106 331
MS.gene57152.t1 AT2G37900 33.810 559 312 10 12 542 43 571 6.03e-106 329
MS.gene57152.t1 AT1G22570 36.047 516 282 12 24 515 10 501 2.01e-103 321
MS.gene57152.t1 AT1G22570 35.606 528 292 12 12 515 35 538 3.45e-103 322
MS.gene57152.t1 AT5G01180 32.562 562 324 12 13 542 31 569 9.48e-102 318
MS.gene57152.t1 AT5G01180 32.562 562 324 12 13 542 31 569 9.48e-102 318
MS.gene57152.t1 AT5G01180 32.562 562 324 12 13 542 31 569 9.48e-102 318
MS.gene57152.t1 AT2G40460 33.690 561 324 11 6 542 24 560 1.98e-101 318
MS.gene57152.t1 AT3G54140 33.214 557 320 10 13 538 30 565 6.22e-101 316
MS.gene57152.t1 AT3G54140 33.214 557 320 10 13 538 30 565 6.22e-101 316
MS.gene57152.t1 AT2G37900 33.973 521 286 10 50 542 2 492 1.44e-98 308
MS.gene57152.t1 AT1G72130 36.321 424 244 6 119 540 20 419 2.40e-98 304
MS.gene57152.t1 AT1G72130 36.321 424 244 6 119 540 20 419 2.40e-98 304
MS.gene57152.t1 AT2G02040 32.613 555 332 10 12 540 46 584 1.41e-96 305
MS.gene57152.t1 AT1G62200 33.095 559 313 8 12 537 57 587 8.33e-95 301
MS.gene57152.t1 AT2G02020 33.952 539 302 12 12 537 47 544 1.70e-93 296
MS.gene57152.t1 AT1G62200 32.180 578 322 9 12 537 57 616 2.85e-91 292
MS.gene57152.t1 AT1G62200 32.180 578 322 9 12 537 71 630 4.80e-91 292
MS.gene57152.t1 AT5G46040 30.864 567 341 10 4 539 20 566 7.66e-85 275
MS.gene57152.t1 AT2G02020 32.839 539 287 14 12 537 47 523 3.44e-82 266
MS.gene57152.t1 AT1G27040 31.618 544 330 9 14 534 2 526 4.48e-81 263
MS.gene57152.t1 AT1G27040 31.769 554 334 10 4 534 22 554 5.70e-81 264
MS.gene57152.t1 AT1G27040 31.769 554 334 10 4 534 26 558 8.45e-81 263
MS.gene57152.t1 AT5G46050 30.125 561 340 12 12 542 32 570 1.13e-80 263
MS.gene57152.t1 AT1G69850 31.046 583 337 15 4 542 24 585 3.75e-78 257
MS.gene57152.t1 AT1G69870 29.529 552 328 9 23 537 67 594 2.29e-77 256
MS.gene57152.t1 AT4G21680 30.702 570 327 13 13 540 34 577 3.18e-76 252
MS.gene57152.t1 AT2G26690 30.199 553 337 11 13 539 30 559 3.68e-76 251
MS.gene57152.t1 AT2G26690 30.387 543 329 11 23 539 7 526 5.79e-76 250
MS.gene57152.t1 AT1G32450 30.922 553 333 11 15 534 45 581 7.61e-76 251
MS.gene57152.t1 AT1G68570 29.982 547 332 10 24 537 10 538 1.81e-74 247
MS.gene57152.t1 AT2G26690 30.410 536 324 11 30 539 2 514 2.52e-74 245
MS.gene57152.t1 AT1G68570 29.616 547 334 9 24 537 40 568 3.59e-74 247
MS.gene57152.t1 AT5G19640 28.748 567 323 13 13 541 65 588 3.29e-73 244
MS.gene57152.t1 AT5G62730 28.962 549 339 11 16 539 6 528 1.07e-72 241
MS.gene57152.t1 AT5G62730 28.877 561 346 12 4 539 55 587 1.46e-72 242
MS.gene57152.t1 AT1G12110 29.239 578 319 12 13 539 33 571 2.69e-71 239
MS.gene57152.t1 AT5G46050 31.293 441 263 10 120 542 40 458 7.26e-69 229
MS.gene57152.t1 AT1G18880 27.768 551 341 11 24 537 36 566 6.51e-68 230
MS.gene57152.t1 AT1G59740 28.699 561 337 12 18 542 49 582 2.02e-66 226
MS.gene57152.t1 AT3G21670 29.380 548 322 12 24 539 46 560 7.63e-66 224
MS.gene57152.t1 AT3G16180 29.167 576 338 18 7 538 19 568 7.36e-65 222
MS.gene57152.t1 AT1G33440 26.964 560 339 12 11 534 42 567 2.20e-61 213
MS.gene57152.t1 AT1G52190 28.125 576 343 16 4 535 18 566 2.24e-61 213
MS.gene57152.t1 AT3G25260 28.053 524 328 11 19 534 33 515 1.06e-60 209
MS.gene57152.t1 AT1G27080 27.207 555 336 11 23 541 30 552 7.48e-60 208
MS.gene57152.t1 AT5G62680 25.355 564 348 10 24 541 60 596 1.43e-58 205
MS.gene57152.t1 AT1G27080 27.407 540 324 11 38 541 3 510 4.90e-57 199
MS.gene57152.t1 AT5G13400 26.703 558 347 10 24 541 81 616 5.01e-57 201
MS.gene57152.t1 AT1G69860 27.289 546 344 14 23 541 34 553 9.80e-57 199
MS.gene57152.t1 AT3G47960 25.405 555 357 11 24 541 78 612 4.48e-56 199
MS.gene57152.t1 AT3G45720 25.603 539 333 12 34 542 46 546 1.88e-54 193
MS.gene57152.t1 AT5G28470 28.257 545 342 14 24 539 34 558 4.36e-54 192
MS.gene57152.t1 AT5G11570 27.106 546 315 12 1 537 7 478 6.21e-53 187
MS.gene57152.t1 AT3G45660 26.916 535 325 14 30 536 44 540 1.79e-52 187
MS.gene57152.t1 AT3G45660 26.916 535 325 14 30 536 44 540 1.79e-52 187
MS.gene57152.t1 AT3G45660 26.916 535 325 14 30 536 65 561 3.19e-52 187
MS.gene57152.t1 AT3G45650 26.692 532 322 14 34 536 49 541 6.54e-52 186
MS.gene57152.t1 AT5G28470 28.073 545 341 15 24 539 34 556 2.95e-51 184
MS.gene57152.t1 AT3G45680 24.156 563 350 12 16 541 30 552 7.66e-51 183
MS.gene57152.t1 AT3G25280 25.898 529 345 9 16 534 30 521 1.35e-50 182
MS.gene57152.t1 AT3G45700 24.632 544 346 14 16 535 26 529 3.25e-47 173
MS.gene57152.t1 AT3G45650 25.806 558 320 16 34 536 49 567 1.03e-46 172
MS.gene57152.t1 AT3G45710 22.727 550 356 13 16 535 31 541 1.01e-44 166
MS.gene57152.t1 AT3G45690 21.550 529 311 13 34 535 45 496 2.87e-31 127
MS.gene57152.t1 AT2G38100 25.926 540 317 19 35 541 2 491 1.23e-30 125
MS.gene57152.t1 AT2G38100 25.926 540 317 19 35 541 18 507 1.93e-30 125
MS.gene57152.t1 AT2G38100 25.926 540 317 19 35 541 24 513 2.14e-30 125

Find 87 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCAATGGTGGTATTT+TGG 0.145365 6.2:-4321718 MS.gene57152:CDS
CACCTATTGCTGATGCTTAT+TGG 0.205664 6.2:-4323820 MS.gene57152:CDS
GACACATTTGGTTGGGTAAT+AGG 0.231752 6.2:-4321646 MS.gene57152:CDS
CAAAGGTGTAGCCTCAAATT+TGG 0.243808 6.2:-4323942 MS.gene57152:CDS
TGATTAAGCTATTGCCTATA+TGG 0.259511 6.2:-4320633 MS.gene57152:CDS
ACCTATTGCTGATGCTTATT+GGG 0.269588 6.2:-4323819 MS.gene57152:CDS
TTACCACAGTACATTCTTCT+TGG 0.292712 6.2:-4320241 MS.gene57152:CDS
ACACATTTGGTTGGGTAATA+GGG 0.306033 6.2:-4321645 MS.gene57152:CDS
TAACGGCATTAACAGTATTA+TGG 0.311123 6.2:+4320474 None:intergenic
AACAACCAGAAAATGCTTAT+TGG 0.321275 6.2:+4320262 None:intergenic
CTGATAACACGACAGGAAAA+AGG 0.335435 6.2:-4320421 MS.gene57152:CDS
TCTCTCTATTTAATCTCATT+AGG 0.346870 6.2:-4321853 MS.gene57152:CDS
CCCATTGTTCTCATATTCTT+CGG 0.363879 6.2:+4320163 None:intergenic
GAGAAAAGATGAGGACATTA+TGG 0.364757 6.2:+4323784 None:intergenic
AAGCATTAAGGTCATAAATA+AGG 0.365962 6.2:-4320698 MS.gene57152:CDS
TGCCACCAACAATGGCATTA+TGG 0.367205 6.2:+4323841 None:intergenic
TGTTTGTGCTGGAAGCCTAA+TGG 0.372172 6.2:-4321695 MS.gene57152:CDS
CACTTCCATAATGCCATTGT+TGG 0.382096 6.2:-4323846 MS.gene57152:CDS
CACGTTTGGATAATTACTAT+TGG 0.386424 6.2:-4320015 MS.gene57152:CDS
CGAAAACTGTGAAAGCATTA+AGG 0.391903 6.2:-4320710 MS.gene57152:CDS
CAGCAAAGATGGTTAATAGT+TGG 0.392002 6.2:-4323877 MS.gene57152:CDS
GTTTGTGCTGGAAGCCTAAT+GGG 0.410630 6.2:-4321694 MS.gene57152:CDS
TTAATCATAACCTTTACATT+TGG 0.412053 6.2:+4320649 None:intergenic
TGGTATCTTCTTATAATGGC+TGG 0.414363 6.2:-4324642 None:intergenic
AATCCATCTCTACAAGCCTT+TGG 0.428240 6.2:-4321817 MS.gene57152:CDS
TCTTACATCCAAGACACATT+TGG 0.430307 6.2:-4321658 MS.gene57152:CDS
TAGATAAGTTACCAAATTTG+AGG 0.430421 6.2:+4323931 None:intergenic
AGCAAAGATGGTTAATAGTT+GGG 0.441043 6.2:-4323876 MS.gene57152:CDS
CATCCAAGACACATTTGGTT+GGG 0.442138 6.2:-4321653 MS.gene57152:CDS
CAACTCATCTGCAGCAAAGA+TGG 0.448211 6.2:-4323888 MS.gene57152:CDS
ATGAGAAGCATTGTCCATAT+AGG 0.448966 6.2:+4320619 None:intergenic
TGATATGGTCGAGGCACGTT+TGG 0.450686 6.2:-4320029 MS.gene57152:CDS
AATTCATGCATTCTCCTCAT+AGG 0.453128 6.2:-4324594 MS.gene57152:intron
ATTACTATTGGCTTCTAGCT+TGG 0.455302 6.2:-4320003 MS.gene57152:CDS
GAAGTATACACAAGTTCAAA+AGG 0.460982 6.2:-4320073 MS.gene57152:CDS
GCCCAATAAGCATCAGCAAT+AGG 0.462037 6.2:+4323818 None:intergenic
ACATGAATGTTACACCCATT+AGG 0.462461 6.2:+4321680 None:intergenic
CTATTTGAAACAGTCATTGC+AGG 0.464469 6.2:-4323983 MS.gene57152:intron
CCGAAGAATATGAGAACAAT+GGG 0.466258 6.2:-4320163 MS.gene57152:CDS
GCCTTTGGAGCTGATCAACT+TGG 0.472222 6.2:-4321802 MS.gene57152:CDS
GCATGAATTGCTGAGCCTCT+TGG 0.476082 6.2:+4324608 None:intergenic
AAGATGGTTAATAGTTGGGT+TGG 0.477748 6.2:-4323872 MS.gene57152:CDS
TGGACAATGTTATAGCACTT+TGG 0.479628 6.2:+4320494 None:intergenic
GCTCCAAAGGCTTGTAGAGA+TGG 0.488186 6.2:+4321814 None:intergenic
TTCCATAATGCCATTGTTGG+TGG 0.499004 6.2:-4323843 MS.gene57152:CDS
CACTTTGGAGTGTGGCCGGT+GGG 0.502069 6.2:+4320509 None:intergenic
TTACCCAACCAAATGTGTCT+TGG 0.508468 6.2:+4321650 None:intergenic
CTCTTAAACATGTTCGTGAA+AGG 0.511777 6.2:+4321511 None:intergenic
TGCTATACCTGCGATTTCGA+TGG 0.512758 6.2:-4321620 MS.gene57152:CDS
ACATCCAAGACACATTTGGT+TGG 0.514558 6.2:-4321654 MS.gene57152:CDS
GAAATGAAACGCCTTGCTAT+CGG 0.516183 6.2:-4320325 MS.gene57152:CDS
ACCAAGTTGATCAGCTCCAA+AGG 0.526037 6.2:+4321801 None:intergenic
AACTTATCTAACTGATGTTG+TGG 0.535055 6.2:-4323918 MS.gene57152:CDS
GTGTCTGCTACCAAATGTAA+AGG 0.535911 6.2:-4320659 MS.gene57152:CDS
TCATTTGTCGACCGATAGCA+AGG 0.538648 6.2:+4320314 None:intergenic
GTGATGCAAAGGATGGGAAT+CGG 0.543695 6.2:-4320391 MS.gene57152:CDS
TATAAACGTGATGCAAAGGA+TGG 0.549790 6.2:-4320398 MS.gene57152:CDS
CAACAGCACTAGCAAGATCA+TGG 0.549961 6.2:-4321918 MS.gene57152:CDS
ATAGAGAGGTTTGCATTCAA+AGG 0.550568 6.2:-4323959 MS.gene57152:CDS
TGTTATAGCACTTTGGAGTG+TGG 0.558276 6.2:+4320501 None:intergenic
TATTTAATCTCATTAGGCCA+AGG 0.562331 6.2:-4321847 MS.gene57152:CDS
ACACATAGAATTTACCTATG+AGG 0.562483 6.2:+4324580 None:intergenic
ATAGCACTTTGGAGTGTGGC+CGG 0.564600 6.2:+4320505 None:intergenic
GTTCAAAAGGAACTCCAAGT+TGG 0.566715 6.2:-4320060 MS.gene57152:CDS
AAGGTATAAACGTGATGCAA+AGG 0.571082 6.2:-4320402 MS.gene57152:CDS
ATGACAATGAAGAGAAACAT+AGG 0.572423 6.2:-4320547 MS.gene57152:CDS
GCACTTTGGAGTGTGGCCGG+TGG 0.580031 6.2:+4320508 None:intergenic
GAAAGAACCATCGAAATCGC+AGG 0.584602 6.2:+4321613 None:intergenic
TCCGAAGAATATGAGAACAA+TGG 0.585411 6.2:-4320164 MS.gene57152:CDS
GGTCGACAAATGAGAAGCGA+AGG 0.590088 6.2:-4320304 MS.gene57152:CDS
CGTTCAGCTGATAACACGAC+AGG 0.595310 6.2:-4320428 MS.gene57152:CDS
TTCAAATTTCAAGATCCCAC+CGG 0.597703 6.2:-4320524 MS.gene57152:CDS
TATCTTCTTATAATGGCTGG+TGG 0.599636 6.2:-4324639 None:intergenic
GCAAAGGATGGGAATCGGAA+TGG 0.602918 6.2:-4320386 MS.gene57152:CDS
CAGTCATTGCAGGTATAGAG+AGG 0.605527 6.2:-4323973 MS.gene57152:CDS
GTATCATCTGTGTTACTACA+AGG 0.608964 6.2:+4321763 None:intergenic
ATATCATCAGAAAACCAACT+TGG 0.615024 6.2:+4320046 None:intergenic
ATAAACGTGATGCAAAGGAT+GGG 0.622044 6.2:-4320397 MS.gene57152:CDS
CGTGTTATCAGCTGAACGAA+CGG 0.625279 6.2:+4320433 None:intergenic
GAGATGGATTATATCCACCT+TGG 0.625994 6.2:+4321830 None:intergenic
GCAATAGGTGCCACCAACAA+TGG 0.628514 6.2:+4323833 None:intergenic
TTAATCTCATTAGGCCAAGG+TGG 0.638847 6.2:-4321844 MS.gene57152:CDS
TTGGTAGAGTAATTTCACAA+TGG 0.651611 6.2:+4321461 None:intergenic
CATAACATAGAGAAAAGATG+AGG 0.677023 6.2:+4323775 None:intergenic
AATCATAGCGATGATTATCG+CGG 0.703876 6.2:-4320356 MS.gene57152:CDS
CTGGTGGACAGAAAACCAAG+AGG 0.752478 6.2:-4324623 MS.gene57152:CDS
ATACCAAGAAGAATGTACTG+TGG 0.754580 6.2:+4320238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTATTTATAGTTTA+TGG - chr6.2:4323183-4323202 MS.gene57152:intron 10.0%
!! AATTACTATTTATAGTTTAT+GGG - chr6.2:4323184-4323203 MS.gene57152:intron 10.0%
!! ATAACATAAAAAATAATAAG+TGG + chr6.2:4321898-4321917 None:intergenic 10.0%
!! TAACTTTATAGAAATATATT+TGG - chr6.2:4320872-4320891 MS.gene57152:intron 10.0%
!!! TTTTTTAATCAAAATTTAGA+TGG + chr6.2:4321618-4321637 None:intergenic 10.0%
!! AAAAATAAATGGAATAATCT+TGG + chr6.2:4321309-4321328 None:intergenic 15.0%
!! ACATAATTTAGTGTAATTAT+AGG - chr6.2:4322249-4322268 MS.gene57152:intron 15.0%
!! GTATATACTATATATAAAGT+AGG + chr6.2:4321414-4321433 None:intergenic 15.0%
!! TAGAATATCATAAATCAAAA+GGG + chr6.2:4320505-4320524 None:intergenic 15.0%
!! TGTAAATATGTAAATACAAA+AGG + chr6.2:4320840-4320859 None:intergenic 15.0%
!!! ATTTATTTTTTCCTTGTTTT+TGG - chr6.2:4320547-4320566 MS.gene57152:CDS 15.0%
!!! TGAAATTTTTATAATCATAG+AGG + chr6.2:4321846-4321865 None:intergenic 15.0%
!!! TTTTTTAGAATGTATAGAAA+CGG + chr6.2:4322469-4322488 None:intergenic 15.0%
!! AAATATGTAAATACAAAAGG+AGG + chr6.2:4320837-4320856 None:intergenic 20.0%
!! AACAGTATAGTTAATAGATA+AGG - chr6.2:4321812-4321831 MS.gene57152:CDS 20.0%
!! AATACTATAGTATTAGCATT+AGG - chr6.2:4321234-4321253 MS.gene57152:intron 20.0%
!! AATATGTAAATACAAAAGGA+GGG + chr6.2:4320836-4320855 None:intergenic 20.0%
!! AATGACTTAGATGATTAAAA+AGG + chr6.2:4323231-4323250 None:intergenic 20.0%
!! AGCAAATTTCATATTATCAA+TGG + chr6.2:4320184-4320203 None:intergenic 20.0%
!! ATGCAAGAATAATAGAATAT+TGG + chr6.2:4320481-4320500 None:intergenic 20.0%
!! CGTAGACAATAATAATAAAT+TGG + chr6.2:4321686-4321705 None:intergenic 20.0%
!! CTATACTATAACAAACTTAA+TGG + chr6.2:4321264-4321283 None:intergenic 20.0%
!! CTATAGTATTTGTATAAAGT+AGG + chr6.2:4321224-4321243 None:intergenic 20.0%
!! GTAGAATATCATAAATCAAA+AGG + chr6.2:4320506-4320525 None:intergenic 20.0%
!! TGGTTTCATATCTATATAAT+TGG + chr6.2:4321995-4322014 None:intergenic 20.0%
!! TTAGAGAAAAATATCACAAA+TGG + chr6.2:4320129-4320148 None:intergenic 20.0%
!!! ATTTATTTTTCTTGTGAAAC+AGG - chr6.2:4323799-4323818 MS.gene57152:CDS 20.0%
!!! GTTTCTATACATTCTAAAAA+AGG - chr6.2:4322468-4322487 MS.gene57152:intron 20.0%
!!! TATTATATCCTTTTAGCATA+TGG + chr6.2:4321932-4321951 None:intergenic 20.0%
!!! TGATATTTTGTACACATATT+TGG - chr6.2:4321006-4321025 MS.gene57152:intron 20.0%
!!! TTCAAGTTTCAAACTTATTA+GGG - chr6.2:4320038-4320057 MS.gene57152:CDS 20.0%
!!! TTTCAAGTTTCAAACTTATT+AGG - chr6.2:4320037-4320056 MS.gene57152:CDS 20.0%
! AACTCAAAATTCTCTTTGTT+TGG + chr6.2:4322049-4322068 None:intergenic 25.0%
! AAGCATTAAGGTCATAAATA+AGG - chr6.2:4323857-4323876 MS.gene57152:CDS 25.0%
! AATTAGGTTAAACAATATGG+CGG + chr6.2:4323590-4323609 None:intergenic 25.0%
! AATTCAAATCCATTCAATTG+CGG + chr6.2:4320306-4320325 None:intergenic 25.0%
! ATAAAAACTCTGTCGTATAA+CGG + chr6.2:4324101-4324120 None:intergenic 25.0%
! CAGAATTAGGTTAAACAATA+TGG + chr6.2:4323593-4323612 None:intergenic 25.0%
! CATATATGCTTAAATATGAG+TGG + chr6.2:4321492-4321511 None:intergenic 25.0%
! CTGTAGTTGAATTTAATTGT+AGG - chr6.2:4320354-4320373 MS.gene57152:CDS 25.0%
! GAAGTATATATATTTGTGGA+AGG + chr6.2:4320814-4320833 None:intergenic 25.0%
! GAGTTTAAATATGTCAAAGA+CGG + chr6.2:4320946-4320965 None:intergenic 25.0%
! GATAAGGTTAAAACAACTTA+TGG - chr6.2:4322431-4322450 MS.gene57152:intron 25.0%
! TAGATAAGTTACCAAATTTG+AGG + chr6.2:4320627-4320646 None:intergenic 25.0%
! TCATATTATCAATGGAATTG+AGG + chr6.2:4320176-4320195 None:intergenic 25.0%
! TCTCTCTATTTAATCTCATT+AGG - chr6.2:4322702-4322721 MS.gene57152:intron 25.0%
! TGTACAAAATATCAGTTTAG+TGG + chr6.2:4321000-4321019 None:intergenic 25.0%
!! AAATTGTTCATTGATTGAGA+AGG + chr6.2:4321555-4321574 None:intergenic 25.0%
!! AATTGTTCATTGATTGAGAA+GGG + chr6.2:4321554-4321573 None:intergenic 25.0%
!! ACTCAAAATTCTCTTTGTTT+GGG + chr6.2:4322048-4322067 None:intergenic 25.0%
!! ATTTTCGTCTTCCATAATAT+CGG - chr6.2:4320241-4320260 MS.gene57152:CDS 25.0%
!! TATATCTGATATTTTCACAG+TGG - chr6.2:4324337-4324356 MS.gene57152:intron 25.0%
!! TATTGGTTGAATTATGACTA+TGG + chr6.2:4320464-4320483 None:intergenic 25.0%
!! TGTTTAACCTAATTCTGAAA+AGG - chr6.2:4323596-4323615 MS.gene57152:intron 25.0%
!!! AAAAAGCACTTTTCTTTCAA+TGG - chr6.2:4322826-4322845 MS.gene57152:intron 25.0%
!!! AAACAAAGAGAATTTTGAGT+TGG - chr6.2:4322048-4322067 MS.gene57152:intron 25.0%
!!! ATAGGAAACTAGTCTTTAAT+AGG - chr6.2:4320214-4320233 MS.gene57152:CDS 25.0%
!!! GGTATGCAAGAATTTTTTTA+CGG - chr6.2:4324362-4324381 MS.gene57152:intron 25.0%
!!! TAGGAAACTAGTCTTTAATA+GGG - chr6.2:4320215-4320234 MS.gene57152:CDS 25.0%
AAAAAATGTGCAGAGAATAG+AGG - chr6.2:4323470-4323489 MS.gene57152:intron 30.0%
AACAACCAGAAAATGCTTAT+TGG + chr6.2:4324296-4324315 None:intergenic 30.0%
AACTTATCTAACTGATGTTG+TGG - chr6.2:4320637-4320656 MS.gene57152:CDS 30.0%
AAGAGATACACATATGAGAT+GGG + chr6.2:4323415-4323434 None:intergenic 30.0%
AATTTAATTGTAGGCAATCG+TGG - chr6.2:4320363-4320382 MS.gene57152:CDS 30.0%
ACACATAGAATTTACCTATG+AGG + chr6.2:4319978-4319997 None:intergenic 30.0%
AGAGATCCATTAATCTTTGT+TGG - chr6.2:4321452-4321471 MS.gene57152:CDS 30.0%
AGATCATGACATCATAATCA+TGG + chr6.2:4322015-4322034 None:intergenic 30.0%
AGATTGATGCAAGTTCAATA+GGG + chr6.2:4320390-4320409 None:intergenic 30.0%
AGCAAAGATGGTTAATAGTT+GGG - chr6.2:4320679-4320698 MS.gene57152:CDS 30.0%
ATATCATCAGAAAACCAACT+TGG + chr6.2:4324512-4324531 None:intergenic 30.0%
ATGACAATGAAGAGAAACAT+AGG - chr6.2:4324008-4324027 MS.gene57152:intron 30.0%
ATTAAGCACCATATGCTAAA+AGG - chr6.2:4321921-4321940 MS.gene57152:CDS 30.0%
ATTCTCTTACCAAAAAACAC+AGG + chr6.2:4323708-4323727 None:intergenic 30.0%
CACGTTTGGATAATTACTAT+TGG - chr6.2:4324540-4324559 MS.gene57152:intron 30.0%
CAGTAACTTTCTGTTTGAAT+TGG + chr6.2:4322532-4322551 None:intergenic 30.0%
CATAACATAGAGAAAAGATG+AGG + chr6.2:4320783-4320802 None:intergenic 30.0%
CCTCAAATTATTATCTGCAT+CGG + chr6.2:4322224-4322243 None:intergenic 30.0%
CGTTAAGCATAATTCTGAAT+CGG + chr6.2:4323440-4323459 None:intergenic 30.0%
GAAGTATACACAAGTTCAAA+AGG - chr6.2:4324482-4324501 MS.gene57152:intron 30.0%
GTAAGAGAATGTGTGAAAAA+TGG - chr6.2:4323718-4323737 MS.gene57152:intron 30.0%
GTACACGTAATGAAACTTAA+AGG + chr6.2:4323278-4323297 None:intergenic 30.0%
TAACGGCATTAACAGTATTA+TGG + chr6.2:4324084-4324103 None:intergenic 30.0%
TATCATAAGCTAATCCTTGA+GGG - chr6.2:4322400-4322419 MS.gene57152:intron 30.0%
TATTTAAACTCTGTCATTCG+AGG - chr6.2:4320955-4320974 MS.gene57152:intron 30.0%
TATTTAATCTCATTAGGCCA+AGG - chr6.2:4322708-4322727 MS.gene57152:intron 30.0%
TCTTCAATGAATAATACACG+TGG - chr6.2:4321182-4321201 MS.gene57152:intron 30.0%
TGTGTATGTTGGTATCAATT+TGG + chr6.2:4321771-4321790 None:intergenic 30.0%
TTATCATAAGCTAATCCTTG+AGG - chr6.2:4322399-4322418 MS.gene57152:intron 30.0%
TTCAAATAGCACCAAAAACA+AGG + chr6.2:4320561-4320580 None:intergenic 30.0%
TTGGTAGAGTAATTTCACAA+TGG + chr6.2:4323097-4323116 None:intergenic 30.0%
! ACATTTTCAGACTTGTCATT+TGG + chr6.2:4323116-4323135 None:intergenic 30.0%
! ATCTTGTCCTTTTCAGAATT+AGG + chr6.2:4323606-4323625 None:intergenic 30.0%
! ATTGTTCATTGATTGAGAAG+GGG + chr6.2:4321553-4321572 None:intergenic 30.0%
! CTATACATTCTAAAAAAGGC+TGG - chr6.2:4322472-4322491 MS.gene57152:intron 30.0%
! CTCATCTTTTCTCTATGTTA+TGG - chr6.2:4320781-4320800 MS.gene57152:intron 30.0%
! GACAACTTTTATGTGTATGT+TGG + chr6.2:4321782-4321801 None:intergenic 30.0%
! GAGGGAAGTATATATATTTG+TGG + chr6.2:4320818-4320837 None:intergenic 30.0%
! GCAACATTTTTCACAAAACA+AGG - chr6.2:4323984-4324003 MS.gene57152:intron 30.0%
! GCATTGTATACAAGTGTTTT+CGG - chr6.2:4324419-4324438 MS.gene57152:intron 30.0%
! TAGTACCAATAAGCATTTTC+TGG - chr6.2:4324288-4324307 MS.gene57152:intron 30.0%
! TCTATCTTGATTTTCTCTAG+TGG - chr6.2:4322963-4322982 MS.gene57152:intron 30.0%
! TCTTGTGTTTTCTTCCTATA+GGG - chr6.2:4322597-4322616 MS.gene57152:intron 30.0%
! TGTTTTGTGAAAAATGTTGC+AGG + chr6.2:4323984-4324003 None:intergenic 30.0%
! TTCTTGTGTTTTCTTCCTAT+AGG - chr6.2:4322596-4322615 MS.gene57152:intron 30.0%
! TTCTTTCAATGGTGGTATTT+TGG - chr6.2:4322837-4322856 MS.gene57152:intron 30.0%
! TTTGAGTTAAAGCATATGCT+TGG - chr6.2:4320093-4320112 MS.gene57152:CDS 30.0%
!! AATTTGCTGCTGAAAAACAT+AGG - chr6.2:4320196-4320215 MS.gene57152:CDS 30.0%
!!! AAGTTGGTTTTCTGATGATA+TGG - chr6.2:4324511-4324530 MS.gene57152:intron 30.0%
AACTTCACTTCATTCTAGTG+AGG + chr6.2:4321967-4321986 None:intergenic 35.0%
AAGATGGTTAATAGTTGGGT+TGG - chr6.2:4320683-4320702 MS.gene57152:CDS 35.0%
AAGGTATAAACGTGATGCAA+AGG - chr6.2:4324153-4324172 MS.gene57152:intron 35.0%
AATCATAGCGATGATTATCG+CGG - chr6.2:4324199-4324218 MS.gene57152:intron 35.0%
AATGGAATTGAGGCTTAAGA+AGG + chr6.2:4320166-4320185 None:intergenic 35.0%
AATTCATGCATTCTCCTCAT+AGG - chr6.2:4319961-4319980 MS.gene57152:CDS 35.0%
ACACATTTGGTTGGGTAATA+GGG - chr6.2:4322910-4322929 MS.gene57152:intron 35.0%
ACATGAATGTTACACCCATT+AGG + chr6.2:4322878-4322897 None:intergenic 35.0%
ACCTATTGCTGATGCTTATT+GGG - chr6.2:4320736-4320755 MS.gene57152:CDS 35.0%
ACTTCACTTCATTCTAGTGA+GGG + chr6.2:4321966-4321985 None:intergenic 35.0%
ATAAACGTGATGCAAAGGAT+GGG - chr6.2:4324158-4324177 MS.gene57152:intron 35.0%
ATACCAAGAAGAATGTACTG+TGG + chr6.2:4324320-4324339 None:intergenic 35.0%
ATAGAGAGGTTTGCATTCAA+AGG - chr6.2:4320596-4320615 MS.gene57152:CDS 35.0%
ATCATCATACCGCAATTGAA+TGG - chr6.2:4320294-4320313 MS.gene57152:CDS 35.0%
CAAGAGATACACATATGAGA+TGG + chr6.2:4323416-4323435 None:intergenic 35.0%
CAGACTCCAACAAAGATTAA+TGG + chr6.2:4321461-4321480 None:intergenic 35.0%
CAGCAAAGATGGTTAATAGT+TGG - chr6.2:4320678-4320697 MS.gene57152:CDS 35.0%
CCCATTGTTCTCATATTCTT+CGG + chr6.2:4324395-4324414 None:intergenic 35.0%
CCGAAGAATATGAGAACAAT+GGG - chr6.2:4324392-4324411 MS.gene57152:intron 35.0%
CCGATGCAGATAATAATTTG+AGG - chr6.2:4322221-4322240 MS.gene57152:intron 35.0%
CTCTTAAACATGTTCGTGAA+AGG + chr6.2:4323047-4323066 None:intergenic 35.0%
CTTATCTTTATAAGCCCTCA+AGG + chr6.2:4322417-4322436 None:intergenic 35.0%
CTTGAGGGCTTATAAAGATA+AGG - chr6.2:4322415-4322434 MS.gene57152:intron 35.0%
GAATGTATAGAAACGGCTTA+CGG + chr6.2:4322462-4322481 None:intergenic 35.0%
GAGAAAAGATGAGGACATTA+TGG + chr6.2:4320774-4320793 None:intergenic 35.0%
GAGATTGATGCAAGTTCAAT+AGG + chr6.2:4320391-4320410 None:intergenic 35.0%
GATGAGAAATCAGTATGCAT+AGG - chr6.2:4323637-4323656 MS.gene57152:intron 35.0%
GGTCATTGTAAGTCTCATAA+CGG + chr6.2:4323754-4323773 None:intergenic 35.0%
GTCATTGTAAGTCTCATAAC+GGG + chr6.2:4323753-4323772 None:intergenic 35.0%
GTGAAATGTAGAATCTGACT+TGG + chr6.2:4321587-4321606 None:intergenic 35.0%
TAATGTCGAAGCCGATATTA+TGG + chr6.2:4320255-4320274 None:intergenic 35.0%
TACACATATGAGATGGGAAA+TGG + chr6.2:4323409-4323428 None:intergenic 35.0%
TATAAACGTGATGCAAAGGA+TGG - chr6.2:4324157-4324176 MS.gene57152:intron 35.0%
TATCTGTTATGTTACTGACG+TGG - chr6.2:4323342-4323361 MS.gene57152:intron 35.0%
TCCGAAGAATATGAGAACAA+TGG - chr6.2:4324391-4324410 MS.gene57152:intron 35.0%
TCTGCAATGACTAATATACG+TGG - chr6.2:4321372-4321391 MS.gene57152:intron 35.0%
TCTTACATCCAAGACACATT+TGG - chr6.2:4322897-4322916 MS.gene57152:intron 35.0%
TGAAAAATGTTGCAGGTTGT+TGG + chr6.2:4323977-4323996 None:intergenic 35.0%
TGGACAATGTTATAGCACTT+TGG + chr6.2:4324064-4324083 None:intergenic 35.0%
TTACCACAGTACATTCTTCT+TGG - chr6.2:4324314-4324333 MS.gene57152:intron 35.0%
TTCAAATTTCAAGATCCCAC+CGG - chr6.2:4324031-4324050 MS.gene57152:intron 35.0%
TTGTAGTTGAATTCAACTGC+AGG + chr6.2:4320330-4320349 None:intergenic 35.0%
! AAGCACTTTTCTTTCAATGG+TGG - chr6.2:4322829-4322848 MS.gene57152:intron 35.0%
! CTATTTGAAACAGTCATTGC+AGG - chr6.2:4320572-4320591 MS.gene57152:CDS 35.0%
! GTATCATCTGTGTTACTACA+AGG + chr6.2:4322795-4322814 None:intergenic 35.0%
! TATACAAGTGTTTTCGGAGT+TGG - chr6.2:4324425-4324444 MS.gene57152:intron 35.0%
! TCTGATATTTTCACAGTGGT+TGG - chr6.2:4324341-4324360 MS.gene57152:intron 35.0%
! TGTAATTATAGGTGTCGTGT+CGG - chr6.2:4322260-4322279 MS.gene57152:intron 35.0%
!! ATGAGAAGCATTGTCCATAT+AGG + chr6.2:4323939-4323958 None:intergenic 35.0%
!! ATTACTATTGGCTTCTAGCT+TGG - chr6.2:4324552-4324571 MS.gene57152:intron 35.0%
!! CGAAAACTGTGAAAGCATTA+AGG - chr6.2:4323845-4323864 MS.gene57152:CDS 35.0%
!! CTACAGTTTTTGAAGAGTTC+AGG - chr6.2:4321525-4321544 MS.gene57152:CDS 35.0%
!! CTTTTTGATGTAGCTTGCAT+AGG + chr6.2:4322106-4322125 None:intergenic 35.0%
!! TAATATCGGCTTCGACATTA+TGG - chr6.2:4320255-4320274 MS.gene57152:CDS 35.0%
!!! GTAACAAGACCTGTGTTTTT+TGG - chr6.2:4323696-4323715 MS.gene57152:intron 35.0%
AATCCATCTCTACAAGCCTT+TGG - chr6.2:4322738-4322757 MS.gene57152:intron 40.0%
ACATCCAAGACACATTTGGT+TGG - chr6.2:4322901-4322920 MS.gene57152:intron 40.0%
CAATGAATAATACACGTGGC+TGG - chr6.2:4321186-4321205 MS.gene57152:intron 40.0%
CAATGACTAATATACGTGGC+TGG - chr6.2:4321376-4321395 MS.gene57152:intron 40.0%
CACCTATTGCTGATGCTTAT+TGG - chr6.2:4320735-4320754 MS.gene57152:CDS 40.0%
CACTTCCATAATGCCATTGT+TGG - chr6.2:4320709-4320728 MS.gene57152:CDS 40.0%
CATAGGATAAGTCACCAACT+CGG - chr6.2:4323654-4323673 MS.gene57152:intron 40.0%
CATCCAAGACACATTTGGTT+GGG - chr6.2:4322902-4322921 MS.gene57152:intron 40.0%
CATGATATTGAGCAGAATCG+CGG + chr6.2:4320420-4320439 None:intergenic 40.0%
CTGATAACACGACAGGAAAA+AGG - chr6.2:4324134-4324153 MS.gene57152:intron 40.0%
GACACATTTGGTTGGGTAAT+AGG - chr6.2:4322909-4322928 MS.gene57152:intron 40.0%
GATGGGAAATGGATACTCAT+CGG + chr6.2:4323398-4323417 None:intergenic 40.0%
GTGTCTGCTACCAAATGTAA+AGG - chr6.2:4323896-4323915 MS.gene57152:CDS 40.0%
GTTCAAAAGGAACTCCAAGT+TGG - chr6.2:4324495-4324514 MS.gene57152:intron 40.0%
TATGAAGCATAGACACTCCT+CGG + chr6.2:4322328-4322347 None:intergenic 40.0%
TTAATCTCATTAGGCCAAGG+TGG - chr6.2:4322711-4322730 MS.gene57152:intron 40.0%
TTACCCAACCAAATGTGTCT+TGG + chr6.2:4322908-4322927 None:intergenic 40.0%
TTCCATAATGCCATTGTTGG+TGG - chr6.2:4320712-4320731 MS.gene57152:CDS 40.0%
TTCTGTAAGCGCTTCACTAT+AGG + chr6.2:4323775-4323794 None:intergenic 40.0%
TTGCTCATGATTGAGCACAA+TGG - chr6.2:4320068-4320087 MS.gene57152:CDS 40.0%
! CAAAGGTGTAGCCTCAAATT+TGG - chr6.2:4320613-4320632 MS.gene57152:CDS 40.0%
! GAAATGAAACGCCTTGCTAT+CGG - chr6.2:4324230-4324249 MS.gene57152:intron 40.0%
! GTTTTCTGATGATATGGTCG+AGG - chr6.2:4324517-4324536 MS.gene57152:intron 40.0%
! TTGATGTAGCTTGCATAGGA+AGG + chr6.2:4322102-4322121 None:intergenic 40.0%
!! ATGAAGCACTGACATAGACA+CGG - chr6.2:4322184-4322203 MS.gene57152:intron 40.0%
!! GAGATGGATTATATCCACCT+TGG + chr6.2:4322728-4322747 None:intergenic 40.0%
!! TGTTATAGCACTTTGGAGTG+TGG + chr6.2:4324057-4324076 None:intergenic 40.0%
!!! TGGTATTTTGGTGTTTGTGC+TGG - chr6.2:4322849-4322868 MS.gene57152:intron 40.0%
CAACAGCACTAGCAAGATCA+TGG - chr6.2:4322637-4322656 MS.gene57152:intron 45.0%
CAACTCATCTGCAGCAAAGA+TGG - chr6.2:4320667-4320686 MS.gene57152:CDS 45.0%
CAGTCATTGCAGGTATAGAG+AGG - chr6.2:4320582-4320601 MS.gene57152:CDS 45.0%
CCAACGTACGAAAATCTCAG+AGG + chr6.2:4323511-4323530 None:intergenic 45.0%
CGTGTTATCAGCTGAACGAA+CGG + chr6.2:4324125-4324144 None:intergenic 45.0%
GAAAGAACCATCGAAATCGC+AGG + chr6.2:4322945-4322964 None:intergenic 45.0%
GAATATGCTGTGTAGCCTAG+AGG + chr6.2:4323544-4323563 None:intergenic 45.0%
GCAGAGAATAGAGGAATCGA+GGG - chr6.2:4323479-4323498 MS.gene57152:intron 45.0%
GCCCAATAAGCATCAGCAAT+AGG + chr6.2:4320740-4320759 None:intergenic 45.0%
GTGATGCAAAGGATGGGAAT+CGG - chr6.2:4324164-4324183 MS.gene57152:intron 45.0%
GTTATGTTACTGACGTGGCA+TGG - chr6.2:4323347-4323366 MS.gene57152:intron 45.0%
GTTGGATGACGATTACCTCT+AGG - chr6.2:4323526-4323545 MS.gene57152:intron 45.0%
GTTTGTGCTGGAAGCCTAAT+GGG - chr6.2:4322861-4322880 MS.gene57152:intron 45.0%
TCAATGCTGCAAGTCCCTAT+AGG + chr6.2:4322614-4322633 None:intergenic 45.0%
TCATTTGTCGACCGATAGCA+AGG + chr6.2:4324244-4324263 None:intergenic 45.0%
TGACGTGATAGTAACCGAGT+TGG + chr6.2:4323671-4323690 None:intergenic 45.0%
TGCAGAGAATAGAGGAATCG+AGG - chr6.2:4323478-4323497 MS.gene57152:intron 45.0%
TGCCACCAACAATGGCATTA+TGG + chr6.2:4320717-4320736 None:intergenic 45.0%
TGCTATACCTGCGATTTCGA+TGG - chr6.2:4322935-4322954 MS.gene57152:intron 45.0%
TGTTTGTGCTGGAAGCCTAA+TGG - chr6.2:4322860-4322879 MS.gene57152:intron 45.0%
! TCACAGTTTTCGCGACAAAG+TGG + chr6.2:4323837-4323856 None:intergenic 45.0%
!! ACCAAGTTGATCAGCTCCAA+AGG + chr6.2:4322757-4322776 None:intergenic 45.0%
!!! CCTCTGAGATTTTCGTACGT+TGG - chr6.2:4323508-4323527 MS.gene57152:intron 45.0%
!! TTATAAAAAGAAAAAATAAA+TGG + chr6.2:4321320-4321339 None:intergenic 5.0%
AACAGTGAGCGAGAGAGAAG+AGG + chr6.2:4323566-4323585 None:intergenic 50.0%
ACATAGACACGGACACGACA+TGG - chr6.2:4322195-4322214 MS.gene57152:intron 50.0%
CGTTCAGCTGATAACACGAC+AGG - chr6.2:4324127-4324146 MS.gene57152:intron 50.0%
GCAAAGGATGGGAATCGGAA+TGG - chr6.2:4324169-4324188 MS.gene57152:intron 50.0%
GCATAGACACTCCTCGGATT+AGG + chr6.2:4322322-4322341 None:intergenic 50.0%
GCATGAATTGCTGAGCCTCT+TGG + chr6.2:4319950-4319969 None:intergenic 50.0%
GCTCCAAAGGCTTGTAGAGA+TGG + chr6.2:4322744-4322763 None:intergenic 50.0%
GGTCGACAAATGAGAAGCGA+AGG - chr6.2:4324251-4324270 MS.gene57152:intron 50.0%
TACTGACGTGGCATGGACAT+GGG - chr6.2:4323354-4323373 MS.gene57152:intron 50.0%
TGATATGGTCGAGGCACGTT+TGG - chr6.2:4324526-4324545 MS.gene57152:intron 50.0%
TTACTGACGTGGCATGGACA+TGG - chr6.2:4323353-4323372 MS.gene57152:intron 50.0%
! CTGGTGGACAGAAAACCAAG+AGG - chr6.2:4319932-4319951 MS.gene57152:CDS 50.0%
! GCAATAGGTGCCACCAACAA+TGG + chr6.2:4320725-4320744 None:intergenic 50.0%
!! ATAGCACTTTGGAGTGTGGC+CGG + chr6.2:4324053-4324072 None:intergenic 50.0%
!! ATGAAGCACTGACTCAGACG+CGG + chr6.2:4321729-4321748 None:intergenic 50.0%
!! GCCTTTGGAGCTGATCAACT+TGG - chr6.2:4322753-4322772 MS.gene57152:intron 50.0%
GATTAGGTGTGCCCCAGTGT+CGG + chr6.2:4322306-4322325 None:intergenic 55.0%
ACTGGGGCACACCTAATCCG+AGG - chr6.2:4322308-4322327 MS.gene57152:intron 60.0%
!! CACTTTGGAGTGTGGCCGGT+GGG + chr6.2:4324049-4324068 None:intergenic 60.0%
ACCGACGCGTGTCCGACACT+GGG - chr6.2:4322291-4322310 MS.gene57152:intron 65.0%
!! GCACTTTGGAGTGTGGCCGG+TGG + chr6.2:4324050-4324069 None:intergenic 65.0%
CACCGACGCGTGTCCGACAC+TGG - chr6.2:4322290-4322309 MS.gene57152:intron 70.0%
CCGACGCGTGTCCGACACTG+GGG - chr6.2:4322292-4322311 MS.gene57152:intron 70.0%
! CCCCAGTGTCGGACACGCGT+CGG + chr6.2:4322295-4322314 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 4319928 4324649 4319928 ID=MS.gene57152
chr6.2 mRNA 4319928 4324649 4319928 ID=MS.gene57152.t1;Parent=MS.gene57152
chr6.2 exon 4324595 4324649 4324595 ID=MS.gene57152.t1.exon1;Parent=MS.gene57152.t1
chr6.2 CDS 4324595 4324649 4324595 ID=cds.MS.gene57152.t1;Parent=MS.gene57152.t1
chr6.2 exon 4323775 4323992 4323775 ID=MS.gene57152.t1.exon2;Parent=MS.gene57152.t1
chr6.2 CDS 4323775 4323992 4323775 ID=cds.MS.gene57152.t1;Parent=MS.gene57152.t1
chr6.2 exon 4321433 4321959 4321433 ID=MS.gene57152.t1.exon3;Parent=MS.gene57152.t1
chr6.2 CDS 4321433 4321959 4321433 ID=cds.MS.gene57152.t1;Parent=MS.gene57152.t1
chr6.2 exon 4319928 4320756 4319928 ID=MS.gene57152.t1.exon4;Parent=MS.gene57152.t1
chr6.2 CDS 4319928 4320756 4319928 ID=cds.MS.gene57152.t1;Parent=MS.gene57152.t1
Gene Sequence

>MS.gene57152

ATGGCTGGTGGACAGAAAACCAAGAGGCTCAGCAATTCATGCATTCTCCTCATAGGTAAATTCTATGTGTATCTTTATATAAATATATGTTTATAATTTGTAGTAGCACTTTCAAGTTTCAAACTTATTAGGGATGAATTTTGCTCATGATTGAGCACAATGGTTTTTGAGTTAAAGCATATGCTTGGATTGAGAAAACCATTTGTGATATTTTTCTCTAACTTTATCTTAGCTTCCTTCTTAAGCCTCAATTCCATTGATAATATGAAATTTGCTGCTGAAAAACATAGGAAACTAGTCTTTAATAGGGTTTATTTTCGTCTTCCATAATATCGGCTTCGACATTATGGTTTTTGATGTATCTGCATCATCATACCGCAATTGAATGGATTTGAATTGCCTGCAGTTGAATTCAACTACAATGTACTGTAGTTGAATTTAATTGTAGGCAATCGTGGTCCCTATTGAACTTGCATCAATCTCATTTAACCGCGATTCTGCTCAATATCATGATTTAAAACTTTAGAAGAGAACCATAGTCATAATTCAACCAATATTCTATTATTCTTGCATGCCCTTTTGATTTATGATATTCTACTATATCATTCTTAGTGTAAAAATTTATTTTTTCCTTGTTTTTGGTGCTATTTGAAACAGTCATTGCAGGTATAGAGAGGTTTGCATTCAAAGGTGTAGCCTCAAATTTGGTAACTTATCTAACTGATGTTGTGGACTTAAGCAACTCATCTGCAGCAAAGATGGTTAATAGTTGGGTTGGATTCACTTCCATAATGCCATTGTTGGTGGCACCTATTGCTGATGCTTATTGGGCTAAATATTCAACCATAATGTCCTCATCTTTTCTCTATGTTATGGTGAGTCACCTTCCACAAATATATATACTTCCCTCCTTTTGTATTTACATATTTACAACATTAATTATCTAACTTTATAGAAATATATTTGGCTTCTAGCATTATTATTAACTTAAGTCAGAGTAATGATCATCTTACAACCGTCTTTGACATATTTAAACTCTGTCATTCGAGGTTATAAAATCAAATTCATACCACTAAACTGATATTTTGTACACATATTTGGCGTCTAAGTTTCAAAAACATAATTATTTTAAATTTATAGTTGATTACTTGATTGTGAAGTTAGACAATGCATTTTTATAATCATTGCAAGATCATTTCATTTTTTTTTTCTTTTGTAATAATATATTTGTTATAAAGCTTTACTCAAACTTTATCTTCAATGAATAATACACGTGGCTGGAAATTTAGCTGACCTACTTTATACAAATACTATAGTATTAGCATTAGGAAATCCATTAAGTTTGTTATAGTATAGTATTAGAATTTTCATGATTATTCCAAGATTATTCCATTTATTTTTTCTTTTTATAATATATTTGTTATAAAGCTATACTCAAACTTTATCTGCAATGACTAATATACGTGGCTGGAAATTTTGATGTCCTACTTTATATATAGTATATACTATATAGTATTTGCATTAAGAGATCCATTAATCTTTGTTGGAGTCTGAGTCATAACCACTCATATTTAAGCATATATGAGACTAAAGTTTTCTACAGTTTTTGAAGAGTTCAGGTGCCCCTTCTCAATCAATGAACAATTTGTTACTTTTCCAAGTCAGATTCTACATTTCACTAGAATATCCATCTAAATTTTGATTAAAAAATAATATTAAACTTTTTTTCATTTAATCTACAGAAGAAAATGTTTACCAATTTATTATTATTGTCTACGTGTACGTGTCAAAGTCATGTCCGCGTCTGAGTCAGTGCTTCATAATTTACAAACAACAGTAGCCAAATTGATACCAACATACACATAAAAGTTGTCACTATATCTAAACAGTATAGTTAATAGATAAGGCAATAATGCCTCTATGATTATAAAAATTTCATATCTTACTTTACTTTGAGAAAAAGTAAACCACTTATTATTTTTTATGTTATTCAATTAAGCACCATATGCTAAAAGGATATAATAATTGCAAAAATCCCTCACTAGAATGAAGTGAAGTTACTAGCCAATTATATAGATATGAAACCATGATTATGATGTCATGATCTGATATATTCACCCAAACAAAGAGAATTTTGAGTTGGTGATATCTTTCTATACATACTGTTGATACCTTCCTATGCAAGCTACATCAAAAAGTTTCATATTAGTCAAGAGCTTATAGCATTTAGTGCTCATGTATAAGTTATTTCTATCTATGAAGCACTGACATAGACACGGACACGACATGGACACCGATGCAGATAATAATTTGAGGAAATGACATAATTTAGTGTAATTATAGGTGTCGTGTCGGTGTCGAACACCGACGCGTGTCCGACACTGGGGCACACCTAATCCGAGGAGTGTCTATGCTTCATAGATTTCTATAGTCAAACATAAAACAAAGTCAAACTATATTCATATAAGATGTTATCATAAGCTAATCCTTGAGGGCTTATAAAGATAAGGTTAAAACAACTTATGGACATACCGTAAGCCGTTTCTATACATTCTAAAAAAGGCTGGCAAATGCTTACATCAGTAGATAAACTCAAATAAGCCAATTCAAACAGAAAGTTACTGTTAATTTGAATATTCAACTTTTTCTTCACTAGTCAATGACATTTTTCTTGTGTTTTCTTCCTATAGGGACTTGCAGCATTGACAACAACAGCACTAGCAAGATCATGGCATCACAAAAACAGATCAATGTCATCTTCATTTCTTTCATTATCTCTCTATTTAATCTCATTAGGCCAAGGTGGATATAATCCATCTCTACAAGCCTTTGGAGCTGATCAACTTGGTGAAGATGAAGAACTACCTTGTAGTAACACAGATGATACAAGTAGCAACAAAAAAGCACTTTTCTTTCAATGGTGGTATTTTGGTGTTTGTGCTGGAAGCCTAATGGGTGTAACATTCATGTCTTACATCCAAGACACATTTGGTTGGGTAATAGGGTTTGCTATACCTGCGATTTCGATGGTTCTTTCTATCTTGATTTTCTCTAGTGGAAGCTCTATATATTCGTATAAACAACAAGATGATGATGATGATCTTCGAGATAAGAAGCCTTTCACGAACATGTTTAAGAGTATAAAAGAATCTGCATTGAAATGCTTCCATTGTGAAATTACTCTACCAAATGACAAGTCTGAAAATGTCGAACTAGAGTAAGTTACACTTTCATACACATAAATTTACATTTACTAAATTACTATTTATAGTTTATGGGAATTTTTTTTTTTTTTGCGTTCCTTTTTAATCATCTAAGTCATTTATGTTTTTTCGTCTCACAATGATCCTTTAAGTTTCATTACGTGTACAACGTTACACTTTTTCACACATATCGTTACGAAAAAAACATATGTATCTGTTATGTTACTGACGTGGCATGGACATGGGATTGTCAGTGTCACTTATCCGATGAGTATCCATTTCCCATCTCATATGTGTATCTCTTGTCCGATTCAGAATTATGCTTAACGATTTAAGCAAAAAAAATGTGCAGAGAATAGAGGAATCGAGGGAATTTGCCTCTGAGATTTTCGTACGTTGGATGACGATTACCTCTAGGCTACACAGCATATTCCTCTTCTCTCTCGCTCACTGTTTCCGCCATATTGTTTAACCTAATTCTGAAAAGGACAAGATTACACATATGAGATGAGAAATCAGTATGCATAGGATAAGTCACCAACTCGGTTACTATCACGTCAGTAACGTAACAAGACCTGTGTTTTTTGGTAAGAGAATGTGTGAAAAATGGTTACGTGTACCCGTTATGAGACTTACAATGACCTATAGTGAAGCGCTTACAGAAAAACATTTATTTTTCTTGTGAAACAGGCTTCAAGAGAGACCACTTTGTCGCGAAAACTGTGAAAGCATTAAGGTCATAAATAAGGATTCTAAAATCAGCATGTGTCTGCTACCAAATGTAAAGGTTATGATTAAGCTATTGCCTATATGGACAATGCTTCTCATGTTTGCAGTGATTTTCCAACAACCTGCAACATTTTTCACAAAACAAGGCATGACAATGAAGAGAAACATAGGTTCAAATTTCAAGATCCCACCGGCCACACTCCAAAGTGCTATAACATTGTCCATAATACTGTTAATGCCGTTATACGACAGAGTTTTTATACCGTTCGTTCAGCTGATAACACGACAGGAAAAAGGTATAAACGTGATGCAAAGGATGGGAATCGGAATGGTACTCTCAATCATAGCGATGATTATCGCGGCACTAGTTGAAATGAAACGCCTTGCTATCGGTCGACAAATGAGAAGCGAAGGATTACTATCAGAAATAGTACCAATAAGCATTTTCTGGTTGTTACCACAGTACATTCTTCTTGGTATATCTGATATTTTCACAGTGGTTGGTATGCAAGAATTTTTTTACGGTGAAGTTCCGAAGAATATGAGAACAATGGGAATTGCATTGTATACAAGTGTTTTCGGAGTTGGAAGCTTTGTTAGTGCATTGATGATTACACTTGTTGAAGTATACACAAGTTCAAAAGGAACTCCAAGTTGGTTTTCTGATGATATGGTCGAGGCACGTTTGGATAATTACTATTGGCTTCTAGCTTGGTTAAGTTCAATTAGCTTATTGTTGTATACACTATTGTGTAAATATTACTATAATAAGAGTGAATCAGATAGTTAA
Protein sequence

>MS.gene57152.t1

MAGGQKTKRLSNSCILLIVIAGIERFAFKGVASNLVTYLTDVVDLSNSSAAKMVNSWVGFTSIMPLLVAPIADAYWAKYSTIMSSSFLYVMGLAALTTTALARSWHHKNRSMSSSFLSLSLYLISLGQGGYNPSLQAFGADQLGEDEELPCSNTDDTSSNKKALFFQWWYFGVCAGSLMGVTFMSYIQDTFGWVIGFAIPAISMVLSILIFSSGSSIYSYKQQDDDDDLRDKKPFTNMFKSIKESALKCFHCEITLPNDKSENVELELQERPLCRENCESIKVINKDSKISMCLLPNVKVMIKLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITLSIILLMPLYDRVFIPFVQLITRQEKGINVMQRMGIGMVLSIIAMIIAALVEMKRLAIGRQMRSEGLLSEIVPISIFWLLPQYILLGISDIFTVVGMQEFFYGEVPKNMRTMGIALYTSVFGVGSFVSALMITLVEVYTSSKGTPSWFSDDMVEARLDNYYWLLAWLSSISLLLYTLLCKYYYNKSESDS